Citrus Sinensis ID: 010816

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500
Protein Sequence
MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG
Secondary Structure (PSIPRED)
ccccccccccEEEEEEcccccEEcccccccccccHHHHHHHHHHHHccccccEEEEEEccccEEEcccccccccccccccEEEEEEEcccEEEEEcccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEccccccccccccccccccEEEEEEccccccccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEccccccEEEEEccccEEEcccccEEEEEEccccEEEEccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEccccccccccccEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEcccccEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEcccccEEEEEEccccEEEEccccEEEEEEcccccEEEEcccccEEEEEccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEHEEEcccccccEEEEEEccccccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEEcccEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccccccccccEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEcc
Coil and Loop (DISEMBL)
meietettNNVMClltdpegnplgapmyfpqnagpqQLSQIVNKLLnneeklpyafyisdhellvPLGSYLEKHKVSVEKVLSIVYqpqavfrirpvnrcsatiAGHTEAVLSvafspdgrqlasgsgdttvrlwdlntqtpmfkctghknwVLCIAWsadgkhlvsgskagelqcwdpqtgkpsgnplsghkkwitgiswepvhlnapcrrfvsaskdgdariwDVSLRKCVICLSGHTLAVTCVKwggdgviytgsqdcTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALrtgafdhtgkqysspeEMKKAALERYNKikgnaperlvsgsddftmflwepavskqpktrmtghqqlvnhvyfspdgqwvasASFDKsiklwngttgKFVAVFRGHVGPVYQIRFELIYcfrypsnfycvvDMSCcmslyswsadsrlllsgskdstlkVWDIRTQKLkqdlpghadevfavdwspdgekvasggkDRVLKLWMG
Flexible Loop (DISEMBL)
meietettnnvMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFdhtgkqysspEEMKKAALERYNKIkgnaperlvsgsdDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVfavdwspdgekvasggkdrvlklwmg
Low Complexity Region (SEG)
MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG
Disordered region (IsUnstruct)
**********VMCLLT***********YF********LSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW**************HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD***********************************DDFTMFLWEPAV********TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS********************
Disordered Region (DISOPRED)
*******TNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG
Disordered Region (DISEMBL)
********NNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH***********KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG
Disordered Region (DISPRO)
MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	500	2.2.26 [Sep-21-2011]
Q9FLX9	473	Notchless protein homolog	yes	no	0.94	0.993	0.763	0.0
Q9NVX2	485	Notchless protein homolog	yes	no	0.94	0.969	0.554	1e-166
Q5RFF8	485	Notchless protein homolog	yes	no	0.926	0.954	0.562	1e-166
Q58D20	486	Notchless protein homolog	yes	no	0.934	0.960	0.552	1e-165
Q8VEJ4	485	Notchless protein homolog	yes	no	0.926	0.954	0.556	1e-164
P25382	515	Ribosome assembly protein	yes	no	0.904	0.877	0.476	1e-134
O74855	502	Ribosome assembly protein	yes	no	0.894	0.890	0.443	1e-120
Q00808	1356	Vegetative incompatibilit	no	no	0.734	0.270	0.340	8e-53
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.784	0.256	0.320	5e-50
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.78	0.310	0.316	1e-48

>sp|Q9FLX9|NLE1_ARATH Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1

 Score =  806 bits (2081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/498 (76%), Positives = 432/498 (86%), Gaps = 28/498 (5%)

Query: 3   IETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHE 62
           ++T+    VMCLLTDPEG  LG+ MY PQ AGP QL+Q+VN+ L+NEE LPY+FY+SD E
Sbjct: 4   MDTDEGKTVMCLLTDPEGTHLGSAMYIPQKAGPLQLTQLVNRFLDNEEMLPYSFYVSDEE 63

Query: 63  LLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQ 122
           LLVP+G+YLEK+KVSVEKVL+IVYQ QAVFRIRPVNRCS TIAGH EAVL V+FSPDG+Q
Sbjct: 64  LLVPVGTYLEKNKVSVEKVLTIVYQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDGKQ 123

Query: 123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
           LASGSGDTTVRLWDL T+TP+F C GHKNWVL +AWS DGKHLVSGSK+GE+ CW+P+ G
Sbjct: 124 LASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKG 183

Query: 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242
           +  G+PL+GHKKWITGISWEPVHL++PCRRFV++SKDGDARIWD++L+K +ICLSGHTLA
Sbjct: 184 ELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHTLA 243

Query: 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
           VTCVKWGGDG+IYTGSQDCTIK+WETTQGKLIRELKGHGHW+NSLALSTEY LRTGAFDH
Sbjct: 244 VTCVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAFDH 303

Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
           TG+QY  P E K+ ALERYNK KG++PERLVSGSDDFTMFLWEP+VSKQPK R+TGHQQL
Sbjct: 304 TGRQY-PPNEEKQKALERYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQL 362

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422
           VNHVYFSPDG+W+ASASFDKS++LWNG TG+FV VFRGHVGPVYQ+              
Sbjct: 363 VNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQV-------------- 408

Query: 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 482
                        SWSADSRLLLSGSKDSTLK+W+IRT+KLKQDLPGHADEVFAVDWSPD
Sbjct: 409 -------------SWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPD 455

Query: 483 GEKVASGGKDRVLKLWMG 500
           GEKV SGGKDRVLKLW G
Sbjct: 456 GEKVVSGGKDRVLKLWKG 473

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NVX2|NLE1_HUMAN Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=4

 Score =  584 bits (1505), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 279/503 (55%), Positives = 349/503 (69%), Gaps = 33/503 (6%)

Query: 2   EIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDH 61
           E        ++    D  G  LG+P   P +  P +L  + N LL  E+ LP AF++ D 
Sbjct: 8   EAVARDVQRLLVQFQDEGGQLLGSPFDVPVDITPDRLQLVCNALLAQEDPLPLAFFVHDA 67

Query: 62  ELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGR 121
           E++  LG  LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+
Sbjct: 68  EIVSSLGKTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGK 127

Query: 122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181
            LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DG+ L SG K G++  WDP T
Sbjct: 128 YLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGRKLASGCKNGQILLWDPST 187

Query: 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL 241
           GK  G  L+GH KWITG+SWEP+H N  CR   S+SKDG  RIWD +  +C   L+GHT 
Sbjct: 188 GKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQ 247

Query: 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
           +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+
Sbjct: 248 SVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFE 307

Query: 302 HTGKQYS------SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355
                 +      S +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P TR
Sbjct: 308 PAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLTR 367

Query: 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415
           MTGHQ L+N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI       
Sbjct: 368 MTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI------- 420

Query: 416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF 475
                               +WSADSRLL+SGS DSTLKVWD++ QKL  DLPGHADEV+
Sbjct: 421 --------------------AWSADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADEVY 460

Query: 476 AVDWSPDGEKVASGGKDRVLKLW 498
           AVDWSPDG++VASGGKD+ L++W
Sbjct: 461 AVDWSPDGQRVASGGKDKCLRIW 483

Homo sapiens (taxid: 9606)

>sp|Q5RFF8|NLE1_PONAB Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3

 Score =  583 bits (1504), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 279/496 (56%), Positives = 348/496 (70%), Gaps = 33/496 (6%)

Query: 9   NNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLG 68
             ++    D  G  LG+P   P +  P +L  + N LL  E+ LP AF++ D E++  LG
Sbjct: 15  QRLLVQFQDEGGQLLGSPFDVPVDITPDRLQLVCNALLAQEDPLPLAFFVHDAEIISSLG 74

Query: 69  SYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSG 128
             LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+ LASGSG
Sbjct: 75  KTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSG 134

Query: 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188
           DTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP TGK  G  
Sbjct: 135 DTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRT 194

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
           L+GH KWITG+SWEP+H N  CR   S+SKDG  RIWD +  +C   L+GHT +VTC++W
Sbjct: 195 LAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTCLRW 254

Query: 249 GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308
           GGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+      +
Sbjct: 255 GGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVN 314

Query: 309 ------SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
                 S +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P TRMTGHQ L
Sbjct: 315 PQDLQGSLQELKERALSRYNLMRGQGPERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQAL 374

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422
           +N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI              
Sbjct: 375 INQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI-------------- 420

Query: 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 482
                        +WSADSRLL+SGS DSTLKVWD++ QKL  DLPGHADEV+AVDWSPD
Sbjct: 421 -------------AWSADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADEVYAVDWSPD 467

Query: 483 GEKVASGGKDRVLKLW 498
           G++VASGGKD+ L++W
Sbjct: 468 GQRVASGGKDKCLRIW 483

Pongo abelii (taxid: 9601)

>sp|Q58D20|NLE1_BOVIN Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=3

 Score =  581 bits (1497), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/500 (55%), Positives = 346/500 (69%), Gaps = 33/500 (6%)

Query: 5   TETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELL 64
           T     ++    D  G  LG+P   P +  P +L  + N LL  E+ LP AFY+ D E++
Sbjct: 12  TRDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEIV 71

Query: 65  VPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLA 124
             LG  LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+ LA
Sbjct: 72  SSLGRTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLA 131

Query: 125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184
           SGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP TGK 
Sbjct: 132 SGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQ 191

Query: 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244
            G  L+GH KWIT +SWEP+H N  CR   S+SKDG  R+WD +  +C   L+GH  +VT
Sbjct: 192 VGRALTGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERTLTGHAQSVT 251

Query: 245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD--- 301
           C++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+   
Sbjct: 252 CLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAE 311

Query: 302 ---HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
              +      S +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P  RMTG
Sbjct: 312 ASVNAQDLRGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTG 371

Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418
           HQ L+N V FSPD + +ASASFDKSIKLW+G TGK++A  RGHV  VYQI          
Sbjct: 372 HQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI---------- 421

Query: 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVD 478
                            +WSADSRLL+SGS DSTLKVWD++ QKL  DLPGHADEV+AVD
Sbjct: 422 -----------------AWSADSRLLVSGSSDSTLKVWDVKAQKLSTDLPGHADEVYAVD 464

Query: 479 WSPDGEKVASGGKDRVLKLW 498
           WSPDG++VASGGKD+ L++W
Sbjct: 465 WSPDGQRVASGGKDKCLRIW 484

Bos taurus (taxid: 9913)

>sp|Q8VEJ4|NLE1_MOUSE Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=4

 Score =  578 bits (1490), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 276/496 (55%), Positives = 346/496 (69%), Gaps = 33/496 (6%)

Query: 9   NNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLG 68
             ++    D  G  LG+P   P +  P +L  + N LL  EE LP AFY+ D E++  LG
Sbjct: 15  QRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEEPLPLAFYVHDAEIVSSLG 74

Query: 69  SYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSG 128
             LE   V  EK++ I+YQPQAVFR+R V RC++++ GH+EAV+SVAFSP G+ LASGSG
Sbjct: 75  KTLESQSVETEKIVDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSG 134

Query: 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188
           DTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP TG   G  
Sbjct: 135 DTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQVLLWDPSTGLQVGRT 194

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
           L+GH KWITG+SWEP+H+N  CR   S+SKDG  R+WD +  +C   L+GHT +VTC++W
Sbjct: 195 LTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRW 254

Query: 249 GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD------H 302
           GGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+      +
Sbjct: 255 GGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEATVN 314

Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
                 S +E+K+ A  RYN ++G  PERLVSGSDDFT+FLW PA  K+P  RMTGHQ L
Sbjct: 315 AQDLQGSLKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQAL 374

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422
           +N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI              
Sbjct: 375 INQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI-------------- 420

Query: 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 482
                        +WSADSRLL+SGS DSTLKVWD++ QKL  DLPGHADEV+AVDWSPD
Sbjct: 421 -------------AWSADSRLLVSGSSDSTLKVWDVKAQKLATDLPGHADEVYAVDWSPD 467

Query: 483 GEKVASGGKDRVLKLW 498
           G++VASGGKD+ L++W
Sbjct: 468 GQRVASGGKDKCLRIW 483

Mus musculus (taxid: 10090)

>sp|P25382|NLE1_YEAST Ribosome assembly protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSA4 PE=1 SV=3

 Score =  479 bits (1234), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/499 (47%), Positives = 328/499 (65%), Gaps = 47/499 (9%)

Query: 20  GNPLGAPMYFPQNAGPQQLSQIVNKLL-NNEEKLPYAF--YISDHELLVPL--------- 67
           G+ +G  +  P     +QL +++N+L   +++ +PY F   I   +   P+         
Sbjct: 42  GDNVGGALRVPGAISEKQLEELLNQLNGTSDDPVPYTFSCTIQGKKASDPVKTIDITDNL 101

Query: 68  -GSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP-DGRQLAS 125
             S ++    S E  ++++Y P+AVF+++PV R S+ IAGH   +L  AF+P    ++ +
Sbjct: 102 YSSLIKPGYNSTEDQITLLYTPRAVFKVKPVTRSSSAIAGHGSTILCSAFAPHTSSRMVT 161

Query: 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185
           G+GD T R+WD +TQTPM    GH NWVLC++WS DG+ + +GS    ++ WDP++G+  
Sbjct: 162 GAGDNTARIWDCDTQTPMHTLKGHYNWVLCVSWSPDGEVIATGSMDNTIRLWDPKSGQCL 221

Query: 186 GNPLSGHKKWITGISWEPVHLNAPCR--RFVSASKDGDARIWDVSLRKCVICLSGHTLAV 243
           G+ L GH KWIT +SWEP+HL  P    R  S+SKDG  +IWD   R C   +SGHT +V
Sbjct: 222 GDALRGHSKWITSLSWEPIHLVKPGSKPRLASSSKDGTIKIWDTVSRVCQYTMSGHTNSV 281

Query: 244 TCVKWGGDGVIYTGSQDCTIKVWE-TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
           +CVKWGG G++Y+GS D T++VW+  +QG+ I  LK H HWVN L+LST+YALR GAFDH
Sbjct: 282 SCVKWGGQGLLYSGSHDRTVRVWDINSQGRCINILKSHAHWVNHLSLSTDYALRIGAFDH 341

Query: 303 TGKQYSSPEEMKKAALERYNKI---KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359
           TGK+ S+PEE +K ALE Y KI    GN+ E +V+ SDD+TMFLW P  S +P  RMTGH
Sbjct: 342 TGKKPSTPEEAQKKALENYEKICKKNGNSEEMMVTASDDYTMFLWNPLKSTKPIARMTGH 401

Query: 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP 419
           Q+LVNHV FSPDG+++ SASFD SIKLW+G  GKF++ FRGHV  VYQ+           
Sbjct: 402 QKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFISTFRGHVASVYQV----------- 450

Query: 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW 479
                           +WS+D RLL+S SKD+TLKVWD+RT+KL  DLPGH DEV+ VDW
Sbjct: 451 ----------------AWSSDCRLLVSCSKDTTLKVWDVRTRKLSVDLPGHKDEVYTVDW 494

Query: 480 SPDGEKVASGGKDRVLKLW 498
           S DG++V SGGKD++++LW
Sbjct: 495 SVDGKRVCSGGKDKMVRLW 513

Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits. Forms a complex with REA1 which is essential for ATP-dependent dissociation of a group of nonribosomal factors from the pre-60S particle.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O74855|NLE1_SCHPO Ribosome assembly protein C18.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18.05c PE=3 SV=1

 Score =  433 bits (1114), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/483 (44%), Positives = 301/483 (62%), Gaps = 36/483 (7%)

Query: 25  APMYFPQNAGPQQLSQIVNKLL-NNEEKLPYAFYISDHELLVPL-----GSYLEKHKVSV 78
           A +  P N+  +QL  ++N+LL N+++ +PY F +   +  + +      S      +  
Sbjct: 45  ASLLVPGNSSVRQLEALLNQLLENSDDPVPYNFALHHEDETIEIQDNLYTSVFHNGLMKT 104

Query: 79  EKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL 137
           E  L+++Y PQAVFR+R V RC+A++ GH   ++S  FSP    +L +GSGD T RLWD 
Sbjct: 105 EDHLTLLYTPQAVFRVRAVTRCTASMNGHDGTIISAQFSPSTSSRLVTGSGDFTARLWDC 164

Query: 138 NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT 197
           +TQTP+    GH NWV C+AW+ D   + +GS    ++ WDP+ G P G+ L  H K I 
Sbjct: 165 DTQTPIATMKGHTNWVSCVAWAPDASIIATGSMDNTIRFWDPKKGSPIGDALRRHTKPIM 224

Query: 198 GISWEPVHLNAPCRRFV--SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY 255
            + W+P+HL      ++  S SKD   RIW+V LR  +  LSGHT  +TCV+WGG   IY
Sbjct: 225 ALCWQPLHLAPDSGPYLLASGSKDNTVRIWNVKLRTLLFTLSGHTAPITCVRWGGQNWIY 284

Query: 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315
           + S D TI++W+   GK +  LKGH   VN L+LSTE+ LR+GA+DHT  +  S  + ++
Sbjct: 285 SSSYDKTIRIWDAKDGKCLHILKGHAARVNHLSLSTEHVLRSGAYDHTDFKPKSFSDERR 344

Query: 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375
            A ERY      + ERLVS SDD  + LW+P  S +P T+M GHQ++VNH  FSPDG+ +
Sbjct: 345 KAKERYEACLKQSGERLVSASDDLQLILWDPQKSTKPITKMHGHQKVVNHASFSPDGRCI 404

Query: 376 ASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLY 435
           A+ASFD S++LW+G TGKF+A  RGHV  VYQ                            
Sbjct: 405 ATASFDSSVRLWDGKTGKFLATLRGHVAAVYQC--------------------------- 437

Query: 436 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 495
           +WS DSRLL+S S+D+TLKVWD+R++K+K DLPGH D+VFAVDWSPDG++VASGG D+ +
Sbjct: 438 AWSTDSRLLVSSSQDTTLKVWDVRSKKMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAV 497

Query: 496 KLW 498
           ++W
Sbjct: 498 RIW 500

Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  208 bits (530), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 139/408 (34%), Positives = 206/408 (50%), Gaps = 41/408 (10%)

Query: 98   NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
            N C+ T+ GH  +VLSVAFS DG+++ASGS D T+++WD  + T      GH   V  +A
Sbjct: 831  NACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVA 890

Query: 158  WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
            +S D + + SGS    ++ WD  +G  +   L GH   +  +++ P       +R  S S
Sbjct: 891  FSPDRERVASGSDDKTIKIWDAASGTCT-QTLEGHGGRVQSVAFSP-----DGQRVASGS 944

Query: 218  KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRE 276
             D   +IWD +   C   L GH  +V  V +  DG  + +GS D TIK+W+T  G   + 
Sbjct: 945  DDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQT 1004

Query: 277  LKGHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERY-----NKIKGNAPE 330
            L+GHG  V S+A S +   + +G+ D T K + +        LE +     + +     +
Sbjct: 1005 LEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQ 1064

Query: 331  RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
            R+ SGSDD T+ +W+ AVS      + GH   V  V FSPDGQ VAS S D +IK+W+  
Sbjct: 1065 RVASGSDDHTIKIWD-AVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAA 1123

Query: 391  TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450
            +G       GH G V+ + F                           S D + + SGS D
Sbjct: 1124 SGTCTQTLEGHGGWVHSVAF---------------------------SPDGQRVASGSID 1156

Query: 451  STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
             T+K+WD  +    Q L GH   V +V +SPDG++VASG  D+ +K+W
Sbjct: 1157 GTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIW 1204

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  199 bits (505), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 207/421 (49%), Gaps = 29/421 (6%)

Query: 100  CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
            C  T+ GHT  V SV FSPDG  LASG  D  VRLWD+++   ++   G+ +WV  + +S
Sbjct: 1066 CLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFS 1125

Query: 160  ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
             +G  L +GS    ++ WD  + K     L GH  W+  +++ P           S S D
Sbjct: 1126 PNGVTLANGSSDQIVRLWDI-SSKKCLYTLQGHTNWVNAVAFSP-----DGATLASGSGD 1179

Query: 220  GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK 278
               R+WD+S  KC+  L GHT  V  V +  DG  + +GS D T+++WE    K +   +
Sbjct: 1180 QTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQ 1239

Query: 279  GHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKAALERY----NKIKGNAP-ERL 332
            GH  WVNS+  + + + L +G+ D T + +           + +    N +  N     L
Sbjct: 1240 GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSML 1299

Query: 333  VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392
             SGS D T+ LWE + SK   T   GH   V+ V FSPDG  +AS S D++++LW+ ++G
Sbjct: 1300 ASGSGDQTVRLWEISSSKCLHT-FQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSG 1358

Query: 393  KFVAVFRGHVGPVYQIRFE---------------LIYCFRYPSNFYCVVDMSCCMSLYSW 437
            + +  F GH   V  + F                 ++        Y +   +  +    +
Sbjct: 1359 ECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVF 1418

Query: 438  SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497
            S D  LL SGS D T+++W+I + +    L GH + V +V +S DG  +ASG  D  +KL
Sbjct: 1419 SPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKL 1478

Query: 498  W 498
            W
Sbjct: 1479 W 1479

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/423 (31%), Positives = 206/423 (48%), Gaps = 33/423 (7%)

Query: 100  CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
            C  T+ GH   V SVAF PDG  LAS SGD T++LWD+   T +   TGH +WV C+A+S
Sbjct: 718  CIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFS 777

Query: 160  ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
             DG  L S +    ++ WD   GK     L  H  W+       V  +A  +   S S D
Sbjct: 778  PDGNTLASSAADHTIKLWDVSQGK-CLRTLKSHTGWV-----RSVAFSADGQTLASGSGD 831

Query: 220  GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK 278
               +IW+    +C+    GHT +V  + +  D  ++ +GS D TIK+W+      I+ L 
Sbjct: 832  RTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLH 891

Query: 279  GHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIK-----GNAPER- 331
            GH + V S+A S +   L   + D + + ++        A   Y           +P+R 
Sbjct: 892  GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAW--YGNTDWALPVAFSPDRQ 949

Query: 332  -LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
             L SGS+D T+ LW+    K   + + GH   +  + FSPD Q +ASAS D S++LWN +
Sbjct: 950  ILASGSNDKTVKLWDWQTGKYISS-LEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNIS 1008

Query: 391  TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM------SCCMSL---------Y 435
            TG+   +   H   VY + F          +  C V +       C  +L          
Sbjct: 1009 TGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGM 1068

Query: 436  SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 495
            +WS D +LL S S D ++++WD  T +    L GH++ V++  +SP+GE +A+   D+ +
Sbjct: 1069 AWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTV 1128

Query: 496  KLW 498
            K+W
Sbjct: 1129 KIW 1131

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	500
225450034	477	PREDICTED: notchless protein homolog [Vi	0.946	0.991	0.860	0.0
297736305	475	unnamed protein product [Vitis vinifera]	0.946	0.995	0.860	0.0
255553492	471	Angio-associated migratory cell protein,	0.942	1.0	0.859	0.0
449464012	478	PREDICTED: notchless protein homolog [Cu	0.946	0.989	0.852	0.0
40557601	482	notchless-like protein [Solanum chacoens	0.932	0.966	0.841	0.0
356559633	480	PREDICTED: notchless protein homolog [Gl	0.946	0.985	0.826	0.0
356499531	480	PREDICTED: notchless protein homolog [Gl	0.946	0.985	0.824	0.0
15237273	473	Notchless protein-like protein [Arabidop	0.94	0.993	0.763	0.0
297792623	472	hypothetical protein ARALYDRAFT_918330 [	0.944	1.0	0.756	0.0
115486121	480	Os11g0594200 [Oryza sativa Japonica Grou	0.924	0.962	0.762	0.0

>gi|225450034|ref|XP_002276009.1| PREDICTED: notchless protein homolog [Vitis vinifera]

 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/502 (86%), Positives = 448/502 (89%), Gaps = 29/502 (5%)

Query: 1   MEIET--ETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYI 58
           MEIE   ET  NVMC LTDPEGN LG PMY PQNA P++L QIVNKLLNNEEKLPYAFYI
Sbjct: 3   MEIEEQGETGKNVMCQLTDPEGNHLGPPMYLPQNAAPKELQQIVNKLLNNEEKLPYAFYI 62

Query: 59  SDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP 118
           SD EL+V LG+YL+K+KVSVEKVL IVYQ QAVFRIRP+NRCS+TIAGHTEAVLSVAFSP
Sbjct: 63  SDQELVVQLGTYLQKNKVSVEKVLPIVYQLQAVFRIRPINRCSSTIAGHTEAVLSVAFSP 122

Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
           DGRQLASGSGDTTVRLWDLNTQTPM+ CTGHKNWVLCIAWS DGKHLVSGSKAGELQCWD
Sbjct: 123 DGRQLASGSGDTTVRLWDLNTQTPMYTCTGHKNWVLCIAWSPDGKHLVSGSKAGELQCWD 182

Query: 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
           PQTGKPSGNPL GHKKWITGISWEPVHL APCRRFVS+SKDGDARIWDVSLRKCVICLSG
Sbjct: 183 PQTGKPSGNPLIGHKKWITGISWEPVHLRAPCRRFVSSSKDGDARIWDVSLRKCVICLSG 242

Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
           HTLAVTCVKWGGDGVIYTGSQDCTIKVWET+QGKLIRELKGHGHWVNSLALSTEY LRTG
Sbjct: 243 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETSQGKLIRELKGHGHWVNSLALSTEYVLRTG 302

Query: 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
           AFDHTGKQY+SPEEMK+ ALERY K+KGNAPERLVSGSDDFTMFLWEPA SK PKTRMTG
Sbjct: 303 AFDHTGKQYTSPEEMKEVALERYKKMKGNAPERLVSGSDDFTMFLWEPADSKHPKTRMTG 362

Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418
           HQQLVNHVYFSPDGQWVASASFDKS+KLWNGTTGKFVA FRGHVGPVYQI          
Sbjct: 363 HQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQI---------- 412

Query: 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVD 478
                            SWSADSRLLLSGSKDSTLKVWDIRT KLKQDLPGH DEVFAVD
Sbjct: 413 -----------------SWSADSRLLLSGSKDSTLKVWDIRTHKLKQDLPGHEDEVFAVD 455

Query: 479 WSPDGEKVASGGKDRVLKLWMG 500
           WSPDGEKVASGG+DRVLKLWMG
Sbjct: 456 WSPDGEKVASGGRDRVLKLWMG 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736305|emb|CBI24943.3| unnamed protein product [Vitis vinifera]

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/502 (86%), Positives = 448/502 (89%), Gaps = 29/502 (5%)

Query: 1   MEIET--ETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYI 58
           MEIE   ET  NVMC LTDPEGN LG PMY PQNA P++L QIVNKLLNNEEKLPYAFYI
Sbjct: 1   MEIEEQGETGKNVMCQLTDPEGNHLGPPMYLPQNAAPKELQQIVNKLLNNEEKLPYAFYI 60

Query: 59  SDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP 118
           SD EL+V LG+YL+K+KVSVEKVL IVYQ QAVFRIRP+NRCS+TIAGHTEAVLSVAFSP
Sbjct: 61  SDQELVVQLGTYLQKNKVSVEKVLPIVYQLQAVFRIRPINRCSSTIAGHTEAVLSVAFSP 120

Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
           DGRQLASGSGDTTVRLWDLNTQTPM+ CTGHKNWVLCIAWS DGKHLVSGSKAGELQCWD
Sbjct: 121 DGRQLASGSGDTTVRLWDLNTQTPMYTCTGHKNWVLCIAWSPDGKHLVSGSKAGELQCWD 180

Query: 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
           PQTGKPSGNPL GHKKWITGISWEPVHL APCRRFVS+SKDGDARIWDVSLRKCVICLSG
Sbjct: 181 PQTGKPSGNPLIGHKKWITGISWEPVHLRAPCRRFVSSSKDGDARIWDVSLRKCVICLSG 240

Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
           HTLAVTCVKWGGDGVIYTGSQDCTIKVWET+QGKLIRELKGHGHWVNSLALSTEY LRTG
Sbjct: 241 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETSQGKLIRELKGHGHWVNSLALSTEYVLRTG 300

Query: 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
           AFDHTGKQY+SPEEMK+ ALERY K+KGNAPERLVSGSDDFTMFLWEPA SK PKTRMTG
Sbjct: 301 AFDHTGKQYTSPEEMKEVALERYKKMKGNAPERLVSGSDDFTMFLWEPADSKHPKTRMTG 360

Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418
           HQQLVNHVYFSPDGQWVASASFDKS+KLWNGTTGKFVA FRGHVGPVYQI          
Sbjct: 361 HQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQI---------- 410

Query: 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVD 478
                            SWSADSRLLLSGSKDSTLKVWDIRT KLKQDLPGH DEVFAVD
Sbjct: 411 -----------------SWSADSRLLLSGSKDSTLKVWDIRTHKLKQDLPGHEDEVFAVD 453

Query: 479 WSPDGEKVASGGKDRVLKLWMG 500
           WSPDGEKVASGG+DRVLKLWMG
Sbjct: 454 WSPDGEKVASGGRDRVLKLWMG 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553492|ref|XP_002517787.1| Angio-associated migratory cell protein, putative [Ricinus communis] gi|223543059|gb|EEF44594.1| Angio-associated migratory cell protein, putative [Ricinus communis]

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/498 (85%), Positives = 446/498 (89%), Gaps = 27/498 (5%)

Query: 3   IETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHE 62
           +E ET NNVMC   D EG  LGAP+Y PQN+GPQQL  IVNKLLNNEEKLP++FYISD E
Sbjct: 1   MEVETVNNVMCQFADREGTALGAPLYLPQNSGPQQLQLIVNKLLNNEEKLPFSFYISDQE 60

Query: 63  LLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQ 122
           LLVPL +YL+K+KVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGH EAVLSVAFSPDGRQ
Sbjct: 61  LLVPLETYLQKNKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHAEAVLSVAFSPDGRQ 120

Query: 123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
           LASGSGDTTVRLWDL+TQTPMF CTGHKNWVLCIAWS DGK+LVSGSKAGELQCWDPQTG
Sbjct: 121 LASGSGDTTVRLWDLSTQTPMFTCTGHKNWVLCIAWSPDGKYLVSGSKAGELQCWDPQTG 180

Query: 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242
           KP GNPL GHKKWITGISWEPVHL+APCRRFVSASKDGDARIWDVSLRKCVI L+GHTLA
Sbjct: 181 KPFGNPLVGHKKWITGISWEPVHLSAPCRRFVSASKDGDARIWDVSLRKCVISLTGHTLA 240

Query: 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
           +TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY LRTGAFDH
Sbjct: 241 ITCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYVLRTGAFDH 300

Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
           TGK YSSPEEMKK ALERYNK+KGN+PERLVSGSDDFTMFLWEPAVSK PKTRMTGHQQL
Sbjct: 301 TGKTYSSPEEMKKVALERYNKMKGNSPERLVSGSDDFTMFLWEPAVSKHPKTRMTGHQQL 360

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422
           VNHVYFSPDGQWVASASFD+S+KLWNG TGKFVA FRGHVGPVYQI              
Sbjct: 361 VNHVYFSPDGQWVASASFDRSVKLWNGVTGKFVAAFRGHVGPVYQI-------------- 406

Query: 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 482
                        SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV+AVDWSPD
Sbjct: 407 -------------SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVYAVDWSPD 453

Query: 483 GEKVASGGKDRVLKLWMG 500
           GEKVASGGKDRVLKLWMG
Sbjct: 454 GEKVASGGKDRVLKLWMG 471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464012|ref|XP_004149723.1| PREDICTED: notchless protein homolog [Cucumis sativus]

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/501 (85%), Positives = 451/501 (90%), Gaps = 28/501 (5%)

Query: 1   MEIE-TETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYIS 59
           M+IE  ETTNNVM LLTDPEG PLGAPMY PQNAGPQQL Q+VNKLL+NEEKLPYAFYIS
Sbjct: 5   MDIEHRETTNNVMILLTDPEGTPLGAPMYLPQNAGPQQLQQMVNKLLSNEEKLPYAFYIS 64

Query: 60  DHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPD 119
           D EL V LG+YLEK+KVSVEKVL++VYQPQAVFRIRPV+RCSATI+GH EAVLSV+FSPD
Sbjct: 65  DQELTVSLGAYLEKNKVSVEKVLTVVYQPQAVFRIRPVSRCSATISGHAEAVLSVSFSPD 124

Query: 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179
           GRQLASGSGDTTVRLWDLNTQTP+F CTGHKNWVL IAWS DGKHLVSGSKAGEL CWDP
Sbjct: 125 GRQLASGSGDTTVRLWDLNTQTPLFTCTGHKNWVLSIAWSPDGKHLVSGSKAGELFCWDP 184

Query: 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239
            TGKP GNPL+GHKKWITGISWEP+HL+APCRRFVS+SKDGDARIWDVSL+KCVICLSGH
Sbjct: 185 LTGKPLGNPLTGHKKWITGISWEPLHLSAPCRRFVSSSKDGDARIWDVSLKKCVICLSGH 244

Query: 240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
           TLA+TCVKWGGDGVIYTGSQDCTIKVWET QGKLIRELKGHGHWVNSLALSTEY LRTGA
Sbjct: 245 TLAITCVKWGGDGVIYTGSQDCTIKVWETKQGKLIRELKGHGHWVNSLALSTEYVLRTGA 304

Query: 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359
           FDHTGKQ+SSPEEMKK ALERYNK+KG+APERLVSGSDDFTMFLWEPAVSKQPK RMTGH
Sbjct: 305 FDHTGKQFSSPEEMKKVALERYNKMKGSAPERLVSGSDDFTMFLWEPAVSKQPKIRMTGH 364

Query: 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP 419
           QQLVNHVYFSPDGQWVASASFDKS+KLWNG TGKFVA FRGHVGPVYQI           
Sbjct: 365 QQLVNHVYFSPDGQWVASASFDKSVKLWNGITGKFVAAFRGHVGPVYQI----------- 413

Query: 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW 479
                           SWSADSRLLLSGSKDSTLK+WDIRT KLK+DLPGHADEVFAVDW
Sbjct: 414 ----------------SWSADSRLLLSGSKDSTLKIWDIRTHKLKEDLPGHADEVFAVDW 457

Query: 480 SPDGEKVASGGKDRVLKLWMG 500
           SPDGEKVASGGKD+VLKLWMG
Sbjct: 458 SPDGEKVASGGKDKVLKLWMG 478

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40557601|gb|AAR88094.1| notchless-like protein [Solanum chacoense]

 Score =  867 bits (2240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/493 (84%), Positives = 444/493 (90%), Gaps = 27/493 (5%)

Query: 8   TNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPL 67
           TN+V+C L DPEGNPLGA +Y P+NA P++L+Q+VNKLL+NEEKLPYAFYISD EL+V L
Sbjct: 17  TNSVICQLADPEGNPLGAALYLPENASPKELNQVVNKLLSNEEKLPYAFYISDEELVVQL 76

Query: 68  GSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGS 127
           GSYLEK+KVSVEKVL+IVYQPQAVFRIRPV RCSATIAGHTEAVLSVAFSPDGRQLASGS
Sbjct: 77  GSYLEKNKVSVEKVLTIVYQPQAVFRIRPVTRCSATIAGHTEAVLSVAFSPDGRQLASGS 136

Query: 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187
           GDTTVRLWDLNTQTP+F C GH+NWVL +AWS DGKHLVSGSKAGEL CWD QTGKP GN
Sbjct: 137 GDTTVRLWDLNTQTPLFTCQGHRNWVLSVAWSPDGKHLVSGSKAGELICWDLQTGKPLGN 196

Query: 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247
           PL+GHKKWITGISWEPVHL+APCRRFVSASKDGDARIWDV+ RKC+ICL+GHTLA+TCVK
Sbjct: 197 PLTGHKKWITGISWEPVHLSAPCRRFVSASKDGDARIWDVTTRKCLICLTGHTLAITCVK 256

Query: 248 WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY 307
           WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY LR+GAFDHT K +
Sbjct: 257 WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYVLRSGAFDHTNKHF 316

Query: 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY 367
           +SPEEMKK ALERYNK++GNAPERLVSGSDDFTMFLWEPAVSK PKTRMTGHQQLVNHVY
Sbjct: 317 ASPEEMKKVALERYNKMRGNAPERLVSGSDDFTMFLWEPAVSKHPKTRMTGHQQLVNHVY 376

Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD 427
           FSPDGQW+ASASFDKS+KLWNGTTGKFVA FRGHVGPVYQI                   
Sbjct: 377 FSPDGQWIASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQI------------------- 417

Query: 428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA 487
                   SWSADSRLLLSGSKDSTLKVWDIRT+KLKQDLPGHADEVFAVDWSPDGEKVA
Sbjct: 418 --------SWSADSRLLLSGSKDSTLKVWDIRTKKLKQDLPGHADEVFAVDWSPDGEKVA 469

Query: 488 SGGKDRVLKLWMG 500
           SGGKDRVLKLWMG
Sbjct: 470 SGGKDRVLKLWMG 482

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559633|ref|XP_003548103.1| PREDICTED: notchless protein homolog [Glycine max]

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/507 (82%), Positives = 445/507 (87%), Gaps = 34/507 (6%)

Query: 1   MEIETET-------TNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLP 53
           ME ETET        NNVMCLLTDP+G P GAPMY PQNAGPQ L+QIVNKLLNNEEKLP
Sbjct: 1   MEAETETMVEKREIINNVMCLLTDPDGTPFGAPMYLPQNAGPQHLNQIVNKLLNNEEKLP 60

Query: 54  YAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLS 113
           YAFYIS+ ELLVPL +YL+K+KVSVEK L IV QPQA+FRIRPVNRC+ATI+GH EAVLS
Sbjct: 61  YAFYISNEELLVPLETYLQKNKVSVEKALPIVCQPQAIFRIRPVNRCTATISGHAEAVLS 120

Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
           VAFSPDG+QLASGSGDTTVR WDL TQTP++ CTGHKNWVLCIAWS DGK+LVSGSK GE
Sbjct: 121 VAFSPDGQQLASGSGDTTVRFWDLTTQTPLYTCTGHKNWVLCIAWSPDGKYLVSGSKTGE 180

Query: 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV 233
           L CWDPQTGK  GNPL GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL+KCV
Sbjct: 181 LICWDPQTGKSLGNPLIGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLKKCV 240

Query: 234 ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293
           +CLSGHTLA+TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY
Sbjct: 241 MCLSGHTLAITCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 300

Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
            LRTGAFDHTGK+YSSPEEMKK ALERY  ++GNAPERLVSGSDDFTMFLWEP ++K PK
Sbjct: 301 VLRTGAFDHTGKKYSSPEEMKKVALERYQLMRGNAPERLVSGSDDFTMFLWEPFINKHPK 360

Query: 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413
           TRMTGHQQLVNHVYFSPDGQWVASASFDKS+KLWNGTTGKFVA FRGHVGPVYQI     
Sbjct: 361 TRMTGHQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQI----- 415

Query: 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE 473
                                 SWSADSRLLLSGSKDSTLKVWDIRT+KLKQDLPGH+DE
Sbjct: 416 ----------------------SWSADSRLLLSGSKDSTLKVWDIRTRKLKQDLPGHSDE 453

Query: 474 VFAVDWSPDGEKVASGGKDRVLKLWMG 500
           VF+VDWSPDGEKVASGGKD+VLKLWMG
Sbjct: 454 VFSVDWSPDGEKVASGGKDKVLKLWMG 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499531|ref|XP_003518593.1| PREDICTED: notchless protein homolog [Glycine max]

 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/507 (82%), Positives = 440/507 (86%), Gaps = 34/507 (6%)

Query: 1   MEIETET-------TNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLP 53
           ME ETET        NNVMCLLTDP+G PLGAPMY PQNAGPQ L QIVNKLLNNEEKLP
Sbjct: 1   MEDETETMVEKREIINNVMCLLTDPDGTPLGAPMYLPQNAGPQHLIQIVNKLLNNEEKLP 60

Query: 54  YAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLS 113
           Y+FYISD ELLVPL +YL K+K SVEK L IV QPQA+FRIRPVNRC+ATI+GH EAVLS
Sbjct: 61  YSFYISDEELLVPLETYLLKNKASVEKALPIVCQPQAIFRIRPVNRCTATISGHAEAVLS 120

Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
           VAFSPDGRQLASGSGDT VR WDL TQTP++ CTGHKNWVL IAWS DGK+LVSGSK GE
Sbjct: 121 VAFSPDGRQLASGSGDTAVRFWDLTTQTPLYTCTGHKNWVLSIAWSPDGKYLVSGSKTGE 180

Query: 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV 233
           L CWDPQTGK  GNPL GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL+KCV
Sbjct: 181 LICWDPQTGKSLGNPLIGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLKKCV 240

Query: 234 ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293
           +CLSGHTLA+TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL+GHGHWVNSLALSTEY
Sbjct: 241 MCLSGHTLAITCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELRGHGHWVNSLALSTEY 300

Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
            LRTGAFDHTGKQYSSPEEMKK ALERY  ++GNAPERLVSGSDDFTMFLWEP ++K PK
Sbjct: 301 VLRTGAFDHTGKQYSSPEEMKKVALERYQAMRGNAPERLVSGSDDFTMFLWEPFINKHPK 360

Query: 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413
           TRMTGHQQLVNHVYFSPDGQWVASASFDKS+KLWNGTTGKFV  FRGHVGPVYQI     
Sbjct: 361 TRMTGHQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVTAFRGHVGPVYQI----- 415

Query: 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE 473
                                 SWSADSRLLLSGSKDSTLKVWDIRT+KLKQDLPGHADE
Sbjct: 416 ----------------------SWSADSRLLLSGSKDSTLKVWDIRTRKLKQDLPGHADE 453

Query: 474 VFAVDWSPDGEKVASGGKDRVLKLWMG 500
           VF+VDWSPDGEKVASGGKD+VLKLWMG
Sbjct: 454 VFSVDWSPDGEKVASGGKDKVLKLWMG 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237273|ref|NP_200094.1| Notchless protein-like protein [Arabidopsis thaliana] gi|75334042|sp|Q9FLX9.1|NLE1_ARATH RecName: Full=Notchless protein homolog gi|10177096|dbj|BAB10430.1| Notchless protein homolog [Arabidopsis thaliana] gi|28416555|gb|AAO42808.1| At5g52820 [Arabidopsis thaliana] gi|110742893|dbj|BAE99344.1| Notchless protein homolog [Arabidopsis thaliana] gi|332008882|gb|AED96265.1| Notchless protein-like protein [Arabidopsis thaliana]

 Score =  806 bits (2081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/498 (76%), Positives = 432/498 (86%), Gaps = 28/498 (5%)

Query: 3   IETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHE 62
           ++T+    VMCLLTDPEG  LG+ MY PQ AGP QL+Q+VN+ L+NEE LPY+FY+SD E
Sbjct: 4   MDTDEGKTVMCLLTDPEGTHLGSAMYIPQKAGPLQLTQLVNRFLDNEEMLPYSFYVSDEE 63

Query: 63  LLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQ 122
           LLVP+G+YLEK+KVSVEKVL+IVYQ QAVFRIRPVNRCS TIAGH EAVL V+FSPDG+Q
Sbjct: 64  LLVPVGTYLEKNKVSVEKVLTIVYQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDGKQ 123

Query: 123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
           LASGSGDTTVRLWDL T+TP+F C GHKNWVL +AWS DGKHLVSGSK+GE+ CW+P+ G
Sbjct: 124 LASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKG 183

Query: 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242
           +  G+PL+GHKKWITGISWEPVHL++PCRRFV++SKDGDARIWD++L+K +ICLSGHTLA
Sbjct: 184 ELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHTLA 243

Query: 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
           VTCVKWGGDG+IYTGSQDCTIK+WETTQGKLIRELKGHGHW+NSLALSTEY LRTGAFDH
Sbjct: 244 VTCVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAFDH 303

Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
           TG+QY  P E K+ ALERYNK KG++PERLVSGSDDFTMFLWEP+VSKQPK R+TGHQQL
Sbjct: 304 TGRQY-PPNEEKQKALERYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQL 362

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422
           VNHVYFSPDG+W+ASASFDKS++LWNG TG+FV VFRGHVGPVYQ+              
Sbjct: 363 VNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQV-------------- 408

Query: 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 482
                        SWSADSRLLLSGSKDSTLK+W+IRT+KLKQDLPGHADEVFAVDWSPD
Sbjct: 409 -------------SWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPD 455

Query: 483 GEKVASGGKDRVLKLWMG 500
           GEKV SGGKDRVLKLW G
Sbjct: 456 GEKVVSGGKDRVLKLWKG 473

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792623|ref|XP_002864196.1| hypothetical protein ARALYDRAFT_918330 [Arabidopsis lyrata subsp. lyrata] gi|297310031|gb|EFH40455.1| hypothetical protein ARALYDRAFT_918330 [Arabidopsis lyrata subsp. lyrata]

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/500 (75%), Positives = 433/500 (86%), Gaps = 28/500 (5%)

Query: 1   MEIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISD 60
           M ++T+    VMCLLTDPEG  LG+ MY PQNAGP QL+Q+VN+ L+NEE LPY+FY+SD
Sbjct: 1   MSMDTDEGKTVMCLLTDPEGTHLGSAMYIPQNAGPLQLTQLVNRFLDNEEMLPYSFYVSD 60

Query: 61  HELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDG 120
            ELLVP+G+YLEK+KVSVEKVL+IVYQ QAVFRIRPVNRCS TIAGH EAVL V+FSPDG
Sbjct: 61  EELLVPVGTYLEKNKVSVEKVLTIVYQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDG 120

Query: 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180
           +QLASGSGDTTVRLWDL T+TP+F C GHKNWVL +AWS DGKHLVSGSK+GE+ CW+P+
Sbjct: 121 KQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPK 180

Query: 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT 240
            G+  G+PL+GHKKWITGISWEPVHL++PCRRFV++SKDGDARIWD++L+K +ICLSGHT
Sbjct: 181 KGELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHT 240

Query: 241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300
           LAVTCV+WGGDG+IYTGSQDCTIK+WETTQGKLIRELKGHGHW+NSLALSTEY LRTGAF
Sbjct: 241 LAVTCVQWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAF 300

Query: 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ 360
           DHTG+QY  P E K+ ALERYN+ KG++PERLVSGSDDFTMFLWEP+VSKQPK R+TGHQ
Sbjct: 301 DHTGRQY-PPNEEKQKALERYNQTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQ 359

Query: 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS 420
           QLVNHVYFSPDG+W+ASASFDKS++LWNG TG+FV  FRGHVGPVYQ+            
Sbjct: 360 QLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTTFRGHVGPVYQV------------ 407

Query: 421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS 480
                          SWSADSRLLLSGSKDSTLK+W+IRT+KLKQDLPGH+DEVFAVDWS
Sbjct: 408 ---------------SWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHSDEVFAVDWS 452

Query: 481 PDGEKVASGGKDRVLKLWMG 500
           PDGEKV SGGKDRVLKLW G
Sbjct: 453 PDGEKVVSGGKDRVLKLWKG 472

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115486121|ref|NP_001068204.1| Os11g0594200 [Oryza sativa Japonica Group] gi|77551780|gb|ABA94577.1| Notchless, putative, expressed [Oryza sativa Japonica Group] gi|113645426|dbj|BAF28567.1| Os11g0594200 [Oryza sativa Japonica Group] gi|215767303|dbj|BAG99531.1| unnamed protein product [Oryza sativa Japonica Group] gi|222616248|gb|EEE52380.1| hypothetical protein OsJ_34468 [Oryza sativa Japonica Group]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/489 (76%), Positives = 413/489 (84%), Gaps = 27/489 (5%)

Query: 11  VMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSY 70
           VMC L +PEG+ LGA +Y PQN GP QL +IVN LL+NE+KLPYAFYI D EL V LG+Y
Sbjct: 18  VMCQLVNPEGDHLGAALYLPQNVGPPQLQEIVNHLLHNEDKLPYAFYIGDEELSVQLGAY 77

Query: 71  LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDT 130
           +++   +VE  L IVYQPQAVFRIRPVNRCSATIAGHTEAVL+V+FSPDGR LASGSGDT
Sbjct: 78  MQQKNANVEVTLRIVYQPQAVFRIRPVNRCSATIAGHTEAVLAVSFSPDGRCLASGSGDT 137

Query: 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS 190
           TVR WDLNTQTP+F C GHKNWVLCIAWS DG HLVSGSK+GEL  WDP+TGK  G PL+
Sbjct: 138 TVRFWDLNTQTPLFTCKGHKNWVLCIAWSPDGNHLVSGSKSGELILWDPKTGKQLGTPLT 197

Query: 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250
           GH+KWIT +SWEPVHL APCRRFVSASKDGDARIWD++ RKCVI L+GHT +VTCVKWGG
Sbjct: 198 GHRKWITAVSWEPVHLQAPCRRFVSASKDGDARIWDITTRKCVIALTGHTNSVTCVKWGG 257

Query: 251 DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310
           DG+IYTGS+DC IKVWET+QGKL++ L+GHGHWVNSLALSTEY LRTGA+DHTGK YS+ 
Sbjct: 258 DGLIYTGSEDCLIKVWETSQGKLVKTLQGHGHWVNSLALSTEYILRTGAYDHTGKTYSTA 317

Query: 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370
           +EMK+AAL RY K++GNAPERLVSGSDDFTMFLWEP +SKQPK RMTGHQ+LVNHVYFSP
Sbjct: 318 DEMKEAALARYKKMRGNAPERLVSGSDDFTMFLWEPTISKQPKARMTGHQKLVNHVYFSP 377

Query: 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSC 430
           DGQW+ASASFDKS+KLWNG TGKFVA FRGHV  VYQI                      
Sbjct: 378 DGQWLASASFDKSVKLWNGITGKFVAAFRGHVADVYQI---------------------- 415

Query: 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG 490
                SWSADSRLLLSGSKDSTLKVWDIRT KLKQDLPGHADEV+AVDWSPDGEKVASGG
Sbjct: 416 -----SWSADSRLLLSGSKDSTLKVWDIRTHKLKQDLPGHADEVYAVDWSPDGEKVASGG 470

Query: 491 KDRVLKLWM 499
           KDRVLKLWM
Sbjct: 471 KDRVLKLWM 479

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	500
TAIR|locus:2176897	473	AT5G52820 "AT5G52820" [Arabido	0.906	0.957	0.710	2.7e-187
UNIPROTKB|Q9NVX2	485	NLE1 "Notchless protein homolo	0.784	0.808	0.577	5.5e-156
RGD|1308301	487	Nle1 "notchless homolog 1 (Dro	0.816	0.837	0.557	2.4e-155
UNIPROTKB|Q58D20	486	NLE1 "Notchless protein homolo	0.814	0.837	0.554	2.4e-155
MGI|MGI:2429770	485	Nle1 "notchless homolog 1 (Dro	0.812	0.837	0.559	3.9e-155
UNIPROTKB|I3LTI2	485	NLE1 "Uncharacterized protein"	0.784	0.808	0.572	2.1e-154
UNIPROTKB|F1NII4	498	NLE1 "Uncharacterized protein"	0.808	0.811	0.553	5.1e-151
DICTYBASE|DDB_G0295761	507	nle1 "putative notchless" [Dic	0.78	0.769	0.555	1.7e-150
UNIPROTKB|F1PUU2	436	NLE1 "Uncharacterized protein"	0.72	0.825	0.592	2.8e-150
FB|FBgn0021874	488	Nle "Notchless" [Drosophila me	0.812	0.831	0.515	8.2e-115

TAIR|locus:2176897 AT5G52820 "AT5G52820" [Arabidopsis thaliana (taxid:3702)]

 Score = 1816 (644.3 bits), Expect = 2.7e-187, P = 2.7e-187
 Identities = 333/469 (71%), Positives = 389/469 (82%)

Query:     3 IETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHE 62
             ++T+    VMCLLTDPEG  LG+ MY PQ AGP QL+Q+VN+ L+NEE LPY+FY+SD E
Sbjct:     4 MDTDEGKTVMCLLTDPEGTHLGSAMYIPQKAGPLQLTQLVNRFLDNEEMLPYSFYVSDEE 63

Query:    63 LLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQ 122
             LLVP+G+YLEK+KVSVEKVL+IVYQ QAVFRIRPVNRCS TIAGH EAVL V+FSPDG+Q
Sbjct:    64 LLVPVGTYLEKNKVSVEKVLTIVYQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDGKQ 123

Query:   123 LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
             LASGSGDTTVRLWDL T+TP+F C GHKNWVL +AWS DGKHLVSGSK+GE+ CW+P+ G
Sbjct:   124 LASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKG 183

Query:   183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242
             +  G+PL+GHKKWITGISWEPVHL++PCRRFV++SKDGDARIWD++L+K +ICLSGHTLA
Sbjct:   184 ELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHTLA 243

Query:   243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
             VTCVKWGGDG+IYTGSQDCTIK+WETTQGKLIRELKGHGHW+NSLALSTEY LRTGAFDH
Sbjct:   244 VTCVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAFDH 303

Query:   303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
             TG+QY  P E K+ ALERYNK KG++PERLVSGSDDFTMFLWEP+VSKQPK R+TGHQQL
Sbjct:   304 TGRQYP-PNEEKQKALERYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQL 362

Query:   363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE----LIYCFRY 418
             VNHVYFSPDG+W+ASASFDKS++LWNG TG+FV VFRGHVGPVYQ+ +     L+     
Sbjct:   363 VNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSK 422

Query:   419 PSNF--YCVVDMSCCMSL---------YSWSADSRLLLSGSKDSTLKVW 456
              S    + +        L           WS D   ++SG KD  LK+W
Sbjct:   423 DSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLW 471

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0051604 "protein maturation" evidence=RCA

UNIPROTKB|Q9NVX2 NLE1 "Notchless protein homolog 1" [Homo sapiens (taxid:9606)]

 Score = 1261 (449.0 bits), Expect = 5.5e-156, Sum P(2) = 5.5e-156
 Identities = 230/398 (57%), Positives = 288/398 (72%)

Query:    17 DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKV 76
             D  G  LG+P   P +  P +L  + N LL  E+ LP AF++ D E++  LG  LE   V
Sbjct:    23 DEGGQLLGSPFDVPVDITPDRLQLVCNALLAQEDPLPLAFFVHDAEIVSSLGKTLESQAV 82

Query:    77 SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
               EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+ LASGSGDTTVR WD
Sbjct:    83 ETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWD 142

Query:   137 LNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
             L+T+TP F C GH++WVL I+WS DG+ L SG K G++  WDP TGK  G  L+GH KWI
Sbjct:   143 LSTETPHFTCKGHRHWVLSISWSPDGRKLASGCKNGQILLWDPSTGKQVGRTLAGHSKWI 202

Query:   197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256
             TG+SWEP+H N  CR   S+SKDG  RIWD +  +C   L+GHT +VTC++WGGDG++Y+
Sbjct:   203 TGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTCLRWGGDGLLYS 262

Query:   257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS------SP 310
              SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+      +      S 
Sbjct:   263 ASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSL 322

Query:   311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370
             +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P TRMTGHQ L+N V FSP
Sbjct:   323 QELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSP 382

Query:   371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             D + VASASFDKSIKLW+G TGK++A  RGHV  VYQI
Sbjct:   383 DSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI 420

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1308301 Nle1 "notchless homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 1256 (447.2 bits), Expect = 2.4e-155, Sum P(2) = 2.4e-155
 Identities = 233/418 (55%), Positives = 295/418 (70%)

Query:     1 MEIETETT-NNVMCLLT---DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAF 56
             +E+  E   ++V  LL    D  G  LG+P   P +  P QL  + N LL  +E LP AF
Sbjct:     5 VEVSDEAAASDVQRLLVQFQDEGGQLLGSPFDVPVDITPDQLQLVCNALLAQDEPLPLAF 64

Query:    57 YISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAF 116
             Y+ D E++  LG  LE   V  EK++ I+YQPQAVFR+R V RC++++ GH+EAV+SVAF
Sbjct:    65 YVHDAEIVSSLGKTLESQSVETEKIVDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAF 124

Query:   117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176
             SP G+ LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  
Sbjct:   125 SPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQILL 184

Query:   177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL 236
             WDP TG   G  L+GH KWITG+SWEP+H+N  CR   S+SKDG  R+WD +  +C   L
Sbjct:   185 WDPSTGTQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERIL 244

Query:   237 SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296
             +GHT +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALR
Sbjct:   245 TGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALR 304

Query:   297 TGAFD------HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350
             TGAF+      +      S +E+K+ A  RYN ++G  PERLVSGSDDFT+FLW PA  K
Sbjct:   305 TGAFEPAEATVNAQDLQGSLKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDK 364

Query:   351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             +P  RMTGHQ L+N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI
Sbjct:   365 KPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI 422

GO:0001826 "inner cell mass cell differentiation" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0007219 "Notch signaling pathway" evidence=IEA;ISO

UNIPROTKB|Q58D20 NLE1 "Notchless protein homolog 1" [Bos taurus (taxid:9913)]

 Score = 1255 (446.8 bits), Expect = 2.4e-155, Sum P(2) = 2.4e-155
 Identities = 229/413 (55%), Positives = 289/413 (69%)

Query:     2 EIETETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDH 61
             E  T     ++    D  G  LG+P   P +  P +L  + N LL  E+ LP AFY+ D 
Sbjct:     9 EAATRDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDA 68

Query:    62 ELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGR 121
             E++  LG  LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+EAV+SVAFSP G+
Sbjct:    69 EIVSSLGRTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGK 128

Query:   122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181
              LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP T
Sbjct:   129 YLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPST 188

Query:   182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL 241
             GK  G  L+GH KWIT +SWEP+H N  CR   S+SKDG  R+WD +  +C   L+GH  
Sbjct:   189 GKQVGRALTGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERTLTGHAQ 248

Query:   242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
             +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+
Sbjct:   249 SVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFE 308

Query:   302 HTGKQYS------SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355
                   +      S +E+K+ AL RYN ++G  PERLVSGSDDFT+FLW PA  K+P  R
Sbjct:   309 PAEASVNAQDLRGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLAR 368

Query:   356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             MTGHQ L+N V FSPD + +ASASFDKSIKLW+G TGK++A  RGHV  VYQI
Sbjct:   369 MTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI 421

GO:0005730 "nucleolus" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

MGI|MGI:2429770 Nle1 "notchless homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 1254 (446.5 bits), Expect = 3.9e-155, Sum P(2) = 3.9e-155
 Identities = 232/415 (55%), Positives = 292/415 (70%)

Query:     3 IETETTNNVMCLLT---DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYIS 59
             +E     +V  LL    D  G  LG+P   P +  P +L  + N LL  EE LP AFY+ 
Sbjct:     6 VEEAAAGDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEEPLPLAFYVH 65

Query:    60 DHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPD 119
             D E++  LG  LE   V  EK++ I+YQPQAVFR+R V RC++++ GH+EAV+SVAFSP 
Sbjct:    66 DAEIVSSLGKTLESQSVETEKIVDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPT 125

Query:   120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179
             G+ LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP
Sbjct:   126 GKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQVLLWDP 185

Query:   180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239
              TG   G  L+GH KWITG+SWEP+H+N  CR   S+SKDG  R+WD +  +C   L+GH
Sbjct:   186 STGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERILTGH 245

Query:   240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
             T +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGA
Sbjct:   246 TQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGA 305

Query:   300 FD------HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
             F+      +      S +E+K+ A  RYN ++G  PERLVSGSDDFT+FLW PA  K+P 
Sbjct:   306 FEPAEATVNAQDLQGSLKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPL 365

Query:   354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
              RMTGHQ L+N V FSPD + VASASFDKSIKLW+G TGK++A  RGHV  VYQI
Sbjct:   366 ARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI 420

GO:0001826 "inner cell mass cell differentiation" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IDA

UNIPROTKB|I3LTI2 NLE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1247 (444.0 bits), Expect = 2.1e-154, Sum P(2) = 2.1e-154
 Identities = 228/398 (57%), Positives = 285/398 (71%)

Query:    17 DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKV 76
             D  G  LG+P   P +  P +L  + N LL  E+ LP AFY+ D E++  LG  LE   V
Sbjct:    23 DEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEIISSLGKTLESQAV 82

Query:    77 SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
               EKVL I+YQPQAVFR+R V RC++++ GH+EAV+SVAFSP G+ LASGSGDTTVR WD
Sbjct:    83 ETEKVLDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWD 142

Query:   137 LNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
             L+T+TP F C GH++WVL I+WS DGK L SG K G++  WDP TGK  G  L+GH KWI
Sbjct:   143 LSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWI 202

Query:   197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256
             T +SWEP+H N  CR   S+SKDG  R+WD +  +C   L+GHT +VTC++WGGDG++Y+
Sbjct:   203 TALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYS 262

Query:   257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS------SP 310
              SQD TIKVW    G L R L+GHGHWVN++ALST+YALRTGAF+      +      S 
Sbjct:   263 ASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEASVNAQDLRGSL 322

Query:   311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370
             +E+K+ AL RYN ++G   ERLVSGSDDFT+FLW PA  K+P  RMTGHQ L+N V FSP
Sbjct:   323 QELKERALSRYNLVRGRGLERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSP 382

Query:   371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             D + +ASASFDKSIKLW+G TGK++A  RGHV  VYQI
Sbjct:   383 DSRIIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI 420

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

UNIPROTKB|F1NII4 NLE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1223 (435.6 bits), Expect = 5.1e-151, Sum P(2) = 5.1e-151
 Identities = 227/410 (55%), Positives = 282/410 (68%)

Query:     5 TETTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELL 64
             TE    ++    D  G PLG+P   P +  P +L  + N LL  +E +P AF+  D E++
Sbjct:    24 TEDVERLLIQFRDEAGEPLGSPFDVPVSITPDKLQLVCNALLQQDEPVPLAFFFHDAEIV 83

Query:    65 VPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLA 124
             V L   L    V  EKVL I+YQPQAVFR+R V RC++++ GHTEAV+SVAFSP G+ LA
Sbjct:    84 VSLEKTLAGQAVETEKVLDIIYQPQAVFRVRAVTRCTSSLEGHTEAVISVAFSPTGKYLA 143

Query:   125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184
             SGSGDTTVR WDL+T+TP F   GH++WVL IAWS DGK L SG K  ++  WDP TG  
Sbjct:   144 SGSGDTTVRFWDLSTETPQFTAKGHRHWVLSIAWSPDGKKLASGCKNSQIFLWDPATGNQ 203

Query:   185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244
              G  L+GH KWIT + WEP+H+N  CR   SASKDG  RIWD  + +C   L+GHT +VT
Sbjct:   204 IGRVLTGHSKWITCLCWEPLHINPECRYLASASKDGSIRIWDTLMGRCDKILTGHTQSVT 263

Query:   245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD--- 301
             CVKWGGDG++Y+ SQD TIKVW +  G L R L+GH HWVN++ALST+Y LRTGAF+   
Sbjct:   264 CVKWGGDGLLYSSSQDRTIKVWRSQDGILCRTLQGHAHWVNTMALSTDYVLRTGAFEPAE 323

Query:   302 ---HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
                +      S  E+K  A +RY+K++G  PERLVSGSDDFT+FLW PA  K+P  RMTG
Sbjct:   324 ATINPQDMSGSLAELKDKAQQRYDKVRGQGPERLVSGSDDFTLFLWRPAEDKKPLERMTG 383

Query:   359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             HQ L+N V FSPD + +ASASFDKSIKLW G TGK++   RGHV  VYQI
Sbjct:   384 HQALINQVLFSPDTRIIASASFDKSIKLWEGRTGKYLTSLRGHVSAVYQI 433

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

DICTYBASE|DDB_G0295761 nle1 "putative notchless" [Dictyostelium discoideum (taxid:44689)]

 Score = 1220 (434.5 bits), Expect = 1.7e-150, Sum P(2) = 1.7e-150
 Identities = 219/394 (55%), Positives = 292/394 (74%)

Query:    17 DPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLGSYLEKHKV 76
             D E +  G P+   QN   +QL  ++N LLNN+E+LPY+F+++D E+   L ++LE   +
Sbjct:    51 DSENDTTGPPINISQNVTTEQLQMLINSLLNNDEQLPYSFFVNDQEITNNLKNHLEG--L 108

Query:    77 SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
             S E  LSI YQPQAVFR+RPV RC+++++GHTEAVL+ AFSPDG+   S  GDTTVR+WD
Sbjct:   109 SDETTLSIYYQPQAVFRVRPVTRCASSMSGHTEAVLNCAFSPDGKGFVSVGGDTTVRIWD 168

Query:   137 LNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
             + T TP     GH NWVL +AWS D K + +    G+++ W PQTGK  G+ L GH K+I
Sbjct:   169 IYTSTPTHTLKGHTNWVLQVAWSPDSKKIATAGMEGDIRIWCPQTGKQLGSTLKGHTKFI 228

Query:   197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256
             TG+SWEP HLN  C R  S+SKD   RIWD    K ++ LSGHT++VTC+KWGG+G+IY+
Sbjct:   229 TGLSWEPFHLNPKCVRLASSSKDSTIRIWDTESCKNLMSLSGHTMSVTCLKWGGEGLIYS 288

Query:   257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316
             GSQD T++V+ TT G+L+R L GH HWVN+LAL+T+Y LRTG++DHTGK+Y + EE ++ 
Sbjct:   289 GSQDRTVRVFNTTDGRLVRVLDGHAHWVNTLALNTDYVLRTGSYDHTGKEYDTLEEAQRV 348

Query:   317 ALERYNKIKGNAP--ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW 374
             ALERYN +K  +   E L+SGSDDFT+ +W P+V+K   +R+TGHQQL+N V FSPDG++
Sbjct:   349 ALERYNDVKAKSKGMEILISGSDDFTVIMWNPSVTKTSISRLTGHQQLINLVSFSPDGRY 408

Query:   375 VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
              ASASFDKSIKLW+G +GKF+  FRGHVG VYQ+
Sbjct:   409 FASASFDKSIKLWDGQSGKFLGNFRGHVGAVYQV 442

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1PUU2 NLE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1208 (430.3 bits), Expect = 2.8e-150, Sum P(2) = 2.8e-150
 Identities = 217/366 (59%), Positives = 270/366 (73%)

Query:    49 EEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHT 108
             E+ LP AFY+ D E+   LG  LE   V  EKVL I+YQPQA+FR+R V RC++++ GH+
Sbjct:     6 EDPLPLAFYVHDAEITSSLGKTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHS 65

Query:   109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
             EAV+SVAFSP G+ LASGSGDTTVR WDL+T+TP F C GH++WVL I+WS DGK L SG
Sbjct:    66 EAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKTLASG 125

Query:   169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
              K G++  WDP TGK  G  L+GH KWITG+SWEP+H N  CR   S+SKDG  R+WD +
Sbjct:   126 CKNGQILLWDPSTGKQVGRVLAGHSKWITGLSWEPLHANPECRYMASSSKDGSVRVWDTT 185

Query:   229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288
               +C   L+GHT +VTC++WGGDG++Y+ SQD TIKVW    G L R L+GHGHWVN++A
Sbjct:   186 AGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMA 245

Query:   289 LSTEYALRTGAFDHTGKQYS------SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342
             LST+YALRTGAF+      +      S +E+K  AL RYN ++G  PERLVSGSDDFT+F
Sbjct:   246 LSTDYALRTGAFEPAEASINAQDLQGSLQELKDRALRRYNLVRGQGPERLVSGSDDFTLF 305

Query:   343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
             +W PA  K+P  RMTGHQ L+N V FSPD + +ASASFDKSIKLW+G TGK++A  RGHV
Sbjct:   306 MWSPAEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLASLRGHV 365

Query:   403 GPVYQI 408
               VYQI
Sbjct:   366 AAVYQI 371

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001826 "inner cell mass cell differentiation" evidence=IEA

FB|FBgn0021874 Nle "Notchless" [Drosophila melanogaster (taxid:7227)]

 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 214/415 (51%), Positives = 279/415 (67%)

Query:     2 EIETE---TTNNVMCLLTDPEGNPLGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYI 58
             E +TE   T + +   L    G   G P+  P     QQL  I N LL NEE  PY F++
Sbjct:    10 ETDTEQEATPHTIQARLVSDTGEEAGPPIDLPAGITTQQLGLICNALLKNEEATPYLFFV 69

Query:    59 SDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSP 118
              + E+   L   L+   V  E V+ IVYQPQAVF++RPV RC++++ GH EAV+S+ FSP
Sbjct:    70 GEDEIKKSLEDTLDLASVDTENVIDIVYQPQAVFKVRPVTRCTSSMPGHAEAVVSLNFSP 129

Query:   119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
             DG  LASGSGDTTVRLWDLNT+TP F CTGHK WVLC++W+ DGK L SG KAG +  WD
Sbjct:   130 DGAHLASGSGDTTVRLWDLNTETPHFTCTGHKQWVLCVSWAPDGKRLASGCKAGSIIIWD 189

Query:   179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
             P+TG+  G PLSGHKK I  ++WEP H +  CR+  SAS DGD RIWDV L +C++ ++G
Sbjct:   190 PETGQQKGRPLSGHKKHINCLAWEPYHRDPECRKLASASGDGDCRIWDVKLGQCLMNIAG 249

Query:   239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
             HT AVT V+WGG G+IYT S+D T+K+W    G L R   GH HWVN++ALST+Y LRTG
Sbjct:   250 HTNAVTAVRWGGAGLIYTSSKDRTVKMWRAADGILCRTFSGHAHWVNNIALSTDYVLRTG 309

Query:   299 AF----DHTGKQYS-SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
              F    D +    S S EE++++AL+RY  +  +  E LVS SDD T++LW    +K  +
Sbjct:   310 PFHPVKDRSKSHLSLSTEELQESALKRYQAVCPDEVESLVSCSDDNTLYLWRNNQNKCVE 369

Query:   354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
              RMTGHQ +VN V +SPD + +ASASFDKS++LW  + G+++A FRGHV  VY +
Sbjct:   370 -RMTGHQNVVNDVKYSPDVKLIASASFDKSVRLWRASDGQYMATFRGHVQAVYTV 423

GO:0007219 "Notch signaling pathway" evidence=ISS;TAS

GO:0005112 "Notch binding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLX9	NLE1_ARATH	No assigned EC number	0.7630	0.94	0.9936	yes	no
Q5RFF8	NLE1_PONAB	No assigned EC number	0.5625	0.926	0.9546	yes	no
Q9NVX2	NLE1_HUMAN	No assigned EC number	0.5546	0.94	0.9690	yes	no
Q8VEJ4	NLE1_MOUSE	No assigned EC number	0.5564	0.926	0.9546	yes	no
O74855	NLE1_SCHPO	No assigned EC number	0.4430	0.894	0.8904	yes	no
Q58D20	NLE1_BOVIN	No assigned EC number	0.552	0.934	0.9609	yes	no
P25382	NLE1_YEAST	No assigned EC number	0.4769	0.904	0.8776	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028735001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (477 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00038895001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (280 aa)				•	•		•		0.925
	GSVIVG00027646001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (526 aa)				•	•		•		0.875
	GSVIVG00026600001	SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (229 aa)				•	•				0.823
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•			•		0.806
	GSVIVG00019318001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotg [...] (245 aa)				•	•		•		0.796
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)			•	•				•	0.780
	GSVIVG00013990001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (900 aa)			•	•	•		•	•	0.779
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•			•		0.764
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•			•		0.762
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•			•		0.761

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	500
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-78
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-59
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-53
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-47
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-47
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-32
pfam08154	64	pfam08154, NLE, NLE (NUC135) domain	2e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-14
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-10
smart00320	40	smart00320, WD40, WD40 repeats	2e-10
smart00320	40	smart00320, WD40, WD40 repeats	8e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	7e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
smart00320	40	smart00320, WD40, WD40 repeats	4e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	4e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	5e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	5e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	7e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	9e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.002
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	0.002
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.003
pfam11768	544	pfam11768, DUF3312, Protein of unknown function (D	0.003
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  245 bits (628), Expect = 5e-78
 Identities = 126/400 (31%), Positives = 178/400 (44%), Gaps = 113/400 (28%)

Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
              T+ GHT  V  VAFSPDG+ LA+GSGD T+++WDL T   +    GH   V  +A S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 160 ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
           ADG                                                    S S D
Sbjct: 61  ADGT------------------------------------------------YLASGSSD 72

Query: 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK 278
              R+WD+   +CV  L+GHT  V+ V +  DG ++ + S+D TIKVW+   GK +  L+
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132

Query: 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338
           GH  WVNS+A           F   G                           + S S D
Sbjct: 133 GHTDWVNSVA-----------FSPDGT-------------------------FVASSSQD 156

Query: 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398
            T+ LW+   + +    +TGH   VN V FSPDG+ + S+S D +IKLW+ +TGK +   
Sbjct: 157 GTIKLWDLR-TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215

Query: 399 RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458
           RGH   V  +                           ++S D  LL SGS+D T++VWD+
Sbjct: 216 RGHENGVNSV---------------------------AFSPDGYLLASGSEDGTIRVWDL 248

Query: 459 RTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           RT +  Q L GH + V ++ WSPDG+++ASG  D  +++W
Sbjct: 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  197 bits (503), Expect = 1e-59
 Identities = 108/361 (29%), Positives = 148/361 (40%), Gaps = 113/361 (31%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
                T+ GHT  V  VA S DG  LASGS D T+RLWDL T   +   TGH ++V  +A
Sbjct: 41  GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100

Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
           +S DG  ++S S                                               S
Sbjct: 101 FSPDG-RILSSS-----------------------------------------------S 112

Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE 276
           +D   ++WDV   KC+  L GHT  V  V +  DG  + + SQD TIK+W+   GK +  
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172

Query: 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336
           L GH   VNS+           AF   G+                         +L+S S
Sbjct: 173 LTGHTGEVNSV-----------AFSPDGE-------------------------KLLSSS 196

Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
            D T+ LW+ +  K   T + GH+  VN V FSPDG  +AS S D +I++W+  TG+ V 
Sbjct: 197 SDGTIKLWDLSTGKCLGT-LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255

Query: 397 VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW 456
              GH   V  +                           +WS D + L SGS D T+++W
Sbjct: 256 TLSGHTNSVTSL---------------------------AWSPDGKRLASGSADGTIRIW 288

Query: 457 D 457
           D
Sbjct: 289 D 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  185 bits (470), Expect = 5e-53
 Identities = 131/424 (30%), Positives = 203/424 (47%), Gaps = 68/424 (16%)

Query: 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAW 158
           S  + GH +++ S+AFSPDG  L SGS D T++LWDL+    + K     H + V  +A 
Sbjct: 58  SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 159 -SADGKHLVSGSKA--GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
            S DG  ++  S +  G ++ WD  T       L GH + +T +++ P            
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL----ASG 173

Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY--TGSQDCTIKVWETTQGKL 273
           +S DG  ++WD+   K +  L+GHT  V+ + +  DG +   +GS D TI++W+ + GKL
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 274 IR-ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332
           +R  L GH   V S            +F   G                           L
Sbjct: 234 LRSTLSGHSDSVVS------------SFSPDGS-------------------------LL 256

Query: 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392
            SGS D T+ LW+   S      ++GH   V  V FSPDG+ +AS S D +++LW+  TG
Sbjct: 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316

Query: 393 KFVAVFR--GHVGPVYQIRFE----------------LIYCFRYPSNFYCVVDMSCCMSL 434
           K ++     GH GPV  + F                  ++  R       +   S  +S+
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSV 376

Query: 435 YSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 494
            S+S D R++ SGS D T+++WD+ T  L ++L GH   V ++D+SPDG+ +ASG  D  
Sbjct: 377 -SFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435

Query: 495 LKLW 498
           ++LW
Sbjct: 436 IRLW 439

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  164 bits (418), Expect = 4e-47
 Identities = 71/173 (41%), Positives = 100/173 (57%), Gaps = 7/173 (4%)

Query: 96  PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
              +C  T+ GHT+ V SVAFSPDG  +AS S D T++LWDL T   +   TGH   V  
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182

Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           +A+S DG+ L+S S  G ++ WD  TGK  G  L GH+  +  +++ P           S
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG-TLRGHENGVNSVAFSPDGYL-----LAS 236

Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267
            S+DG  R+WD+   +CV  LSGHT +VT + W  DG  + +GS D TI++W+
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  169 bits (427), Expect = 6e-47
 Identities = 107/320 (33%), Positives = 164/320 (51%), Gaps = 19/320 (5%)

Query: 91  VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCTGH 149
           ++ +    +   T+ GH+E+V S+AFSPDG+ LASGS  D T++LWDL T  P+    GH
Sbjct: 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH 197

Query: 150 KNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA 208
            + V  +A+S DG   + SGS  G ++ WD  TGK   + LSGH   +   S+ P     
Sbjct: 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV-SSFSPDG--- 253

Query: 209 PCRRFVSASKDGDARIWDV-SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
                 S S DG  R+WD+ S    +  LSGH+ +V  V +  DG ++ +GS D T+++W
Sbjct: 254 --SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Query: 267 ETTQGKLIRELK--GHGHWVNSLALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +   GKL+  L   GH   V+SL+ S +    +  G+ D T + +          LE ++
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371

Query: 323 KIKG----NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378
            +           + SGS D T+ LW+ +     +  + GH   V  + FSPDG+ +AS 
Sbjct: 372 NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR-NLDGHTSRVTSLDFSPDGKSLASG 430

Query: 379 SFDKSIKLWNGTTGKFVAVF 398
           S D +I+LW+  T      F
Sbjct: 431 SSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  128 bits (321), Expect = 3e-32
 Identities = 97/365 (26%), Positives = 156/365 (42%), Gaps = 52/365 (14%)

Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR 212
           +  ++  + G           L          S   L GH+  IT I++ P         
Sbjct: 25  LNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDG-----EL 79

Query: 213 FVSASKDGDARIWDVSLRKCVIC--LSGHTLAVTCVKW----GGDGVIYTGSQDCTIKVW 266
            +S S DG  ++WD+   + +I      H  +V+ +      G   ++ + S D T+K+W
Sbjct: 80  LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139

Query: 267 E-TTQGKLIRELKGHGHWVNSLALST--EYALRTGAFDHTGKQYSSPEEMKKAALERYN- 322
           + +T GKLIR L+GH   V SLA S   +      + D T K +        + L  +  
Sbjct: 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD 199

Query: 323 -----KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377
                    +    + SGS D T+ LW+ +  K  ++ ++GH   V    FSPDG  +AS
Sbjct: 200 PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLAS 258

Query: 378 ASFDKSIKLWN-GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436
            S D +I+LW+  ++   +    GH   V  +                           +
Sbjct: 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV---------------------------A 291

Query: 437 WSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGG-KDR 493
           +S D +LL SGS D T+++WD+ T KL     L GH   V ++ +SPDG  + SGG  D 
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351

Query: 494 VLKLW 498
            ++LW
Sbjct: 352 TIRLW 356

Length = 466

>gnl|CDD|219730 pfam08154, NLE, NLE (NUC135) domain

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 11 VMCLLTDPEGNP--LGAPMYFPQNAGPQQLSQIVNKLLNNEEKLPYAFYISDHELLVPLG 68
          V       EG+    G P   P N     LS+++N+LL NEE +P+ F I+  EL   L 
Sbjct: 2  VQVQFVTEEGDYEVPGTPFLVPTNLTRDGLSELLNQLLENEEPVPFDFLINGEELRTSLD 61

Query: 69 SYL 71
           YL
Sbjct: 62 EYL 64

This domain is located N terminal to WD40 repeats. It is found in the microtubule-associated yeast protein YTM1. Length = 64

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 77.4 bits (189), Expect = 3e-15
 Identities = 53/140 (37%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
             S T+ GH   V S++FSPDG  L SG S D T+RLWDL T  P+    GH N VL ++
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVS 377

Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
           +S DG+ + SGS  G ++ WD  TG    N L GH   +T + + P       +   S S
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRN-LDGHTSRVTSLDFSPD-----GKSLASGS 431

Query: 218 KDGDARIWDVSLRKCVICLS 237
            D   R+WD+      +  S
Sbjct: 432 SDNTIRLWDLKTSLKSVSFS 451

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 73.6 bits (179), Expect = 5e-14
 Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 26/197 (13%)

Query: 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364
           +  S   +  +      +    +             +     ++       + GH+  + 
Sbjct: 10  ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSIT 69

Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423
            + FSPDG+ + S S D +IKLW+   G K +    G                  P    
Sbjct: 70  SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDG-- 122

Query: 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPD 482
                           +S LL S S D T+K+WD+ T  KL + L GH++ V ++ +SPD
Sbjct: 123 ----------------NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD 166

Query: 483 GEKVASGG-KDRVLKLW 498
           G+ +ASG   D  +KLW
Sbjct: 167 GKLLASGSSLDGTIKLW 183

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 24/38 (63%), Positives = 27/38 (71%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
           +   T+ GHT  V SVAFSPDG  LASGS D TVR+WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 23/38 (60%), Positives = 27/38 (71%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
               T+ GHT  V SVAFSPDG+ LASGS D T++LWD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
           S +    + GH   V  V FSPDG+++AS S D +IKLW+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            +    + GH   V  V FSPDG  +AS S D ++++W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 460 TQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           + +L + L GH   V +V +SPDG+ +ASG  D  +KLW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 462 KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           KL + L GH   V +V +SPDG  +ASG  D  +++W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 139 TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
           +   +    GH   V  +A+S DGK+L SGS  G ++ WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
             +    GH   V  +A+S DG  L SGS  G ++ WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 230 RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
            K +  L GHT  VT V +  DG ++ +GS D T++VW
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 230 RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267
            + +  L GHT  VT V +  DG  + +GS D TIK+W+
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTE--YALRTGAFDHTGKQYSSPEEMKKAA 317
           +  ++VW+  + +L+ E+K H   V S+  S+     L +G+ D + K +S  + +    
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613

Query: 318 LERYNKI-----KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
           ++    I        +   L  GS D  ++ ++    K P   M GH + V++V F  D 
Sbjct: 614 IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS 672

Query: 373 QWVASASFDKSIKLWN 388
             + S+S D ++KLW+
Sbjct: 673 STLVSSSTDNTLKLWD 688

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 16/169 (9%)

Query: 107 HTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKH 164
           H + V S+ +S  D   LASGS D +V+LW +N    +       N + C+ + ++ G+ 
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRS 632

Query: 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224
           L  GS   ++  +D +  K     + GH K ++ + +            VS+S D   ++
Sbjct: 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF------VDSSTLVSSSTDNTLKL 686

Query: 225 WDVSLRKCVI------CLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVW 266
           WD+S+    I         GHT     V     DG I TGS+   + V+
Sbjct: 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY 735

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 27/67 (40%)

Query: 391 TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450
           +G+ +   +GH GPV  +                           ++S D + L SGS D
Sbjct: 1   SGELLKTLKGHTGPVTSV---------------------------AFSPDGKYLASGSDD 33

Query: 451 STLKVWD 457
            T+K+WD
Sbjct: 34  GTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 27/66 (40%)

Query: 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451
           GK +   +GH GPV  +                           ++S D  LL SGS D 
Sbjct: 1   GKLLRTLKGHTGPVTSV---------------------------AFSPDGNLLASGSDDG 33

Query: 452 TLKVWD 457
           T++VWD
Sbjct: 34  TVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226
           L GH   +T +++ P           S S DG  R+WD
Sbjct: 7   LKGHTGPVTSVAFSPDG-----NLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226
           L GH   +T +++ P       +   S S DG  ++WD
Sbjct: 8   LKGHTGPVTSVAFSPDG-----KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 40/129 (31%)

Query: 104 IAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
           + GHT ++L + F+P   + LASGS D T+R+W++       K                 
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----------------- 112

Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
                     E++  DPQ        L GHKK I+ I W P++    C    S+  D   
Sbjct: 113 ----------EIK--DPQC------ILKGHKKKISIIDWNPMNYYIMC----SSGFDSFV 150

Query: 223 RIWDVSLRK 231
            IWD+   K
Sbjct: 151 NIWDIENEK 159

Length = 568

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN------TQTPMFKCTGHKNWVLCI 156
           T+ GH++ V  V F  D   L S S D T++LWDL+       +TP+    GH N    +
Sbjct: 656 TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714

Query: 157 AWSADGKHLVSGSKAGEL 174
             S    ++ +GS+  E+
Sbjct: 715 GLSVSDGYIATGSETNEV 732

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 106 GHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH 164
           GHT+ V  V+F P     LAS   D  V +WD+     +     H + +  + W+ DG  
Sbjct: 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182

Query: 165 LVSGSKAGELQCWDPQTGK 183
           L + SK  +L   DP+ G 
Sbjct: 183 LCTTSKDKKLNIIDPRDGT 201

Length = 493

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 39/150 (26%), Positives = 56/150 (37%), Gaps = 34/150 (22%)

Query: 329 PERLVSGSDDFTMFLWE-PAVSKQ-----PKTRMTGHQQLVNHVYFSPDGQWV-ASASFD 381
           P++L + S+D T+  W  P          P   + GH + V  V F P    V ASA  D
Sbjct: 88  PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147

Query: 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS 441
             + +W+   GK V V + H   +                           SL  W+ D 
Sbjct: 148 MVVNVWDVERGKAVEVIKCHSDQI--------------------------TSL-EWNLDG 180

Query: 442 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 471
            LL + SKD  L + D R   +   +  HA
Sbjct: 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.0 bits (98), Expect = 7e-04
 Identities = 64/287 (22%), Positives = 118/287 (41%), Gaps = 40/287 (13%)

Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVK 247
           L+   K ++GI W     N+  +  V++S  +G  ++WDV+  + V  +  H   V  + 
Sbjct: 529 LASRSK-LSGICW-----NSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSID 582

Query: 248 WGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY--ALRTGAFDHT 303
           +      ++ +GS D ++K+W   QG  I  +K   + +  +   +E   +L  G+ DH 
Sbjct: 583 YSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADH- 640

Query: 304 GKQYSSPEEMKKAAL-------ERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-----KQ 351
            K Y       K  L       +  + ++      LVS S D T+ LW+ ++S     + 
Sbjct: 641 -KVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINET 699

Query: 352 PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411
           P     GH  + N V  S    ++A+ S           T +     +    PV   +F+
Sbjct: 700 PLHSFMGHTNVKNFVGLSVSDGYIATGS----------ETNEVFVYHKAFPMPVLSYKFK 749

Query: 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458
            I     P +   V D S  +S   W   S  L++ +    +K+ ++
Sbjct: 750 TI----DPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 41.6 bits (97), Expect = 9e-04
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 24/156 (15%)

Query: 122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQ 180
           Q+AS + +  V++WD+     + +   H+  V  I +S AD   L SGS  G ++ W   
Sbjct: 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606

Query: 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS------ASKDGDARIWDVSLR--KC 232
            G                I       N  C +F S      A    D +++   LR  K 
Sbjct: 607 QG--------------VSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL 652

Query: 233 VIC-LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWE 267
            +C + GH+  V+ V++     + + S D T+K+W+
Sbjct: 653 PLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWD 688

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 15/55 (27%), Positives = 31/55 (56%)

Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497
           +L S   D  + VWD+   K  + +  H+D++ +++W+ DG  + +  KD+ L +
Sbjct: 140 VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194

Length = 493

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 108 TEAVLSVAFSPDGRQLA---SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH 164
            E +LS A+SPDG++LA     SG   + + DL T     K           A+S DG  
Sbjct: 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSK 247

Query: 165 L-VSGSKAGELQ 175
           L VS SK G   
Sbjct: 248 LAVSLSKDGNPD 259

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQD-------LPGHADEVFAVDWSPDGEKV-ASGGK 491
           D + L + S+D T+  W I  + L Q+       L GH  +V  V + P    V AS G 
Sbjct: 87  DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146

Query: 492 DRVLKLW 498
           D V+ +W
Sbjct: 147 DMVVNVW 153

Length = 493

>gnl|CDD|204739 pfam11768, DUF3312, Protein of unknown function (DUF3312)

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGS 169
           V S A SPD  +L  G  D+++ L+D +   T + +     +    IAW  D   ++  +
Sbjct: 261 VCSCARSPDEEKLLLGCIDSSLVLYDEHRGVTLLAQAAVIPHL---IAWHPDSAIVLVAN 317

Query: 170 KAGELQCWD 178
           + GELQC+D
Sbjct: 318 EQGELQCFD 326

This is a eukaryotic family of uncharacterized proteins. This family shows similarity to WD40 repeat proteins. Length = 544

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 39.3 bits (91), Expect = 0.004
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 31/170 (18%)

Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV-YFSPDGQWVASASFDKSIKLWNG 389
           ++ S + +  + +W+ A S Q  T M  H++ V  + Y S D   +AS S D S+KLW+ 
Sbjct: 547 QVASSNFEGVVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605

Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
             G  +   +             I C ++PS                     R L  GS 
Sbjct: 606 NQGVSIGTIKTKAN---------ICCVQFPSE------------------SGRSLAFGSA 638

Query: 450 DSTLKVWDIRTQKLKQ-DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           D  +  +D+R  KL    + GH+  V  V +  D   + S   D  LKLW
Sbjct: 639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLW 687

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	500
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.98
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.98
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00421	493	coronin; Provisional	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
KOG0639	705	consensus Transducin-like enhancer of split protei	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.84
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.84
KOG1334	559	consensus WD40 repeat protein [General function pr	99.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.84
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG4227	609	consensus WD40 repeat protein [General function pr	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG1188	376	consensus WD40 repeat protein [General function pr	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.77
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.76
KOG2055	514	consensus WD40 repeat protein [General function pr	99.75
KOG1334	559	consensus WD40 repeat protein [General function pr	99.74
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.73
KOG1310	758	consensus WD40 repeat protein [General function pr	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.72
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.69
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.68
KOG1963	792	consensus WD40 repeat protein [General function pr	99.68
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.68
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.67
KOG1310	758	consensus WD40 repeat protein [General function pr	99.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.66
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.63
KOG0649	325	consensus WD40 repeat protein [General function pr	99.63
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.62
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.61
PRK01742	429	tolB translocation protein TolB; Provisional	99.59
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.59
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.58
PRK11028	330	6-phosphogluconolactonase; Provisional	99.58
KOG4227	609	consensus WD40 repeat protein [General function pr	99.57
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.52
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.49
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.49
PRK03629	429	tolB translocation protein TolB; Provisional	99.49
PRK02889	427	tolB translocation protein TolB; Provisional	99.48
KOG2321	703	consensus WD40 repeat protein [General function pr	99.48
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.47
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.46
PRK04922	433	tolB translocation protein TolB; Provisional	99.46
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.46
KOG2139	445	consensus WD40 repeat protein [General function pr	99.46
KOG2315	566	consensus Predicted translation initiation factor	99.45
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.44
PRK05137	435	tolB translocation protein TolB; Provisional	99.44
KOG2139	445	consensus WD40 repeat protein [General function pr	99.43
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.42
PRK03629	429	tolB translocation protein TolB; Provisional	99.41
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.41
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.38
PRK02889	427	tolB translocation protein TolB; Provisional	99.38
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.38
PRK05137	435	tolB translocation protein TolB; Provisional	99.36
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.35
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.3
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.3
KOG4547	541	consensus WD40 repeat-containing protein [General	99.29
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.28
PRK04922	433	tolB translocation protein TolB; Provisional	99.27
KOG2314	698	consensus Translation initiation factor 3, subunit	99.27
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.26
KOG4547	541	consensus WD40 repeat-containing protein [General	99.26
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.24
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.24
PF08154	65	NLE: NLE (NUC135) domain; InterPro: IPR012972 This	99.23
KOG2315	566	consensus Predicted translation initiation factor	99.21
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.2
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.17
PRK04792	448	tolB translocation protein TolB; Provisional	99.17
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.15
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.15
PRK00178	430	tolB translocation protein TolB; Provisional	99.15
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.14
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.14
PRK01029	428	tolB translocation protein TolB; Provisional	99.12
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.12
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.11
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.09
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.07
PRK00178	430	tolB translocation protein TolB; Provisional	99.03
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.03
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.01
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.0
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.99
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.98
PRK01029	428	tolB translocation protein TolB; Provisional	98.97
PRK04792	448	tolB translocation protein TolB; Provisional	98.97
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.94
KOG2321	703	consensus WD40 repeat protein [General function pr	98.92
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.91
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.89
COG4946	668	Uncharacterized protein related to the periplasmic	98.88
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.88
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.88
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.8
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.8
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.8
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.79
KOG2314	698	consensus Translation initiation factor 3, subunit	98.78
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.76
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.75
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.75
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.74
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.69
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.68
PRK04043	419	tolB translocation protein TolB; Provisional	98.67
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.67
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.64
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.63
KOG2695	425	consensus WD40 repeat protein [General function pr	98.59
KOG2695	425	consensus WD40 repeat protein [General function pr	98.57
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.57
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.55
COG4946	668	Uncharacterized protein related to the periplasmic	98.54
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.53
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.52
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.46
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.37
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.36
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.34
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.33
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.32
PRK04043	419	tolB translocation protein TolB; Provisional	98.31
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.27
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.24
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.2
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.19
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.16
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.16
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.15
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.11
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.1
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.03
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.02
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.02
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.94
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.92
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.87
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.86
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.78
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.76
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.76
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.75
KOG3621	726	consensus WD40 repeat-containing protein [General	97.69
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.65
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.61
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.58
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.55
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.51
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.48
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.41
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.38
PRK02888	635	nitrous-oxide reductase; Validated	97.26
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.25
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.09
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.09
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.04
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.04
KOG2444	238	consensus WD40 repeat protein [General function pr	97.03
PRK02888	635	nitrous-oxide reductase; Validated	96.95
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.95
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.95
KOG2444	238	consensus WD40 repeat protein [General function pr	96.89
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.84
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.84
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.78
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.75
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.72
KOG2395	644	consensus Protein involved in vacuole import and d	96.71
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.69
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.68
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.65
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.56
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.55
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.39
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.31
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.23
KOG3621	726	consensus WD40 repeat-containing protein [General	96.18
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.16
PRK13616	591	lipoprotein LpqB; Provisional	96.02
PRK13616	591	lipoprotein LpqB; Provisional	96.01
KOG2395	644	consensus Protein involved in vacuole import and d	95.97
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	95.96
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.83
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.73
PHA02713	557	hypothetical protein; Provisional	95.63
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.51
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.45
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.21
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.21
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.14
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.73
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.63
COG3391	381	Uncharacterized conserved protein [Function unknow	94.41
PHA02713	557	hypothetical protein; Provisional	94.2
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.08
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.79
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.74
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.56
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.49
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.4
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.01
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	92.83
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.68
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.61
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.52
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.17
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.04
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.03
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.9
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	91.76
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	91.73
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.24
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.15
KOG2247	615	consensus WD40 repeat-containing protein [General	90.78
PRK10115	686	protease 2; Provisional	90.5
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	90.12
COG5167	776	VID27 Protein involved in vacuole import and degra	89.65
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	89.07
PRK13684	334	Ycf48-like protein; Provisional	89.05
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.74
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	88.7
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	88.55
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.19
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.81
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.76
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	87.69
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.65
COG5167	776	VID27 Protein involved in vacuole import and degra	87.39
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	86.58
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.18
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	86.01
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	85.81
PHA03098	534	kelch-like protein; Provisional	85.18
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	84.58
KOG2377	657	consensus Uncharacterized conserved protein [Funct	84.11
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	83.81
COG3391	381	Uncharacterized conserved protein [Function unknow	81.68
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	80.4
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	80.07

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-99  Score=654.15  Aligned_cols=466  Identities=65%  Similarity=1.151  Sum_probs=451.7

Q ss_pred             CcCeEEEEEEC---CCCCcCCCcEeecCCCCHHHHHHHHHHHhcC-CCCCceeEEecCeeeecchhhhHhhcCCCeeeEE
Q 010816            7 TTNNVMCLLTD---PEGNPLGAPMYFPQNAGPQQLSQIVNKLLNN-EEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVL   82 (500)
Q Consensus         7 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (500)
                      +..++++.|..   .++.....++.+|....+.+|..++|+|+.+ ++++|+.|+..+.++..+|++.++...++.|.++
T Consensus        10 ~~~~i~~~l~~~~~d~g~~~g~~~~vp~~is~~qL~~l~n~ll~~s~dp~pysf~v~~~ei~~~l~~tL~~~~v~te~~l   89 (480)
T KOG0271|consen   10 ELVTIPLLLVSVATDTGENEGSALLVPGDISTLQLELLCNQLLGNSDDPVPYSFFVTEIEILDSLETTLEKQNVSTEDVL   89 (480)
T ss_pred             ccccchhhcccccCCcccccCCceeccccCCHHHHHHHHHHHhhcccCCcceEEEecchHHHHHHHHHHhhcccchhhee
Confidence            55677777765   4567778999999999999999999999988 8899999999999999999999999999999999


Q ss_pred             EEEEeecceEeEEecccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCC
Q 010816           83 SIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG  162 (500)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~  162 (500)
                      .+.|+|+.+|+++|..+|...+.||.++|.|++|+|+|+.||||++|.++|+||+.+..+++.+++|..+|.|++|+|||
T Consensus        90 ~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg  169 (480)
T KOG0271|consen   90 TLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG  169 (480)
T ss_pred             eEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcccc
Q 010816          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA  242 (500)
Q Consensus       163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~  242 (500)
                      +.||+|+.||+|++||+++|++....+.+|+.+|++++|.|.+...+|++++++|.||+|+|||+..++|+.++.||+.+
T Consensus       170 k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~  249 (480)
T KOG0271|consen  170 KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS  249 (480)
T ss_pred             chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816          243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (500)
Q Consensus       243 v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (500)
                      |+|+.|..+|+|++|+.|++|++|+...|++.+++++|.++|+.++.+.++.++.++|++++....+..+..+.++.+|+
T Consensus       250 VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~  329 (480)
T KOG0271|consen  250 VTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE  329 (480)
T ss_pred             eEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998888899999999999


Q ss_pred             hhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCc
Q 010816          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV  402 (500)
Q Consensus       323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~  402 (500)
                      .+-+..++++++||+|+++++|++...+.+..++.+|+..|+.+.||||++++|++|.|..|++||.++|+.+.+|+||.
T Consensus       330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv  409 (480)
T KOG0271|consen  330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV  409 (480)
T ss_pred             HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence            99888889999999999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCC
Q 010816          403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD  482 (500)
Q Consensus       403 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d  482 (500)
                      ++||++                           +|+.|.++|++||.|.++++|+++++++...++||.++|++++|+||
T Consensus       410 ~~VYqv---------------------------awsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD  462 (480)
T KOG0271|consen  410 AAVYQV---------------------------AWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD  462 (480)
T ss_pred             ceeEEE---------------------------EeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence            999998                           78999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEec
Q 010816          483 GEKVASGGKDRVLKLWM  499 (500)
Q Consensus       483 g~~l~s~~~D~~v~iW~  499 (500)
                      |+++++|+.|+.+++|.
T Consensus       463 G~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  463 GQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CceeecCCCceEEEeec
Confidence            99999999999999996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7.3e-55  Score=376.95  Aligned_cols=373  Identities=33%  Similarity=0.527  Sum_probs=311.9

Q ss_pred             cCcCeEEEEEECC--CCCcCCCcEeecCCCCHHHHHHHHHHHhcCC----CCCceeEEecCeeeecchhhhHhhcCCCee
Q 010816            6 ETTNNVMCLLTDP--EGNPLGAPMYFPQNAGPQQLSQIVNKLLNNE----EKLPYAFYISDHELLVPLGSYLEKHKVSVE   79 (500)
Q Consensus         6 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (500)
                      ...+||++.|+++  ++.+++.|+++|.+.++++|++++|+|+..+    ++.||+|++.++.|+.+|.+|+++++++.|
T Consensus         3 ~~~~qvqvrF~Tk~e~~aVpD~p~~iP~~~~r~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE   82 (423)
T KOG0313|consen    3 INSGQVQVRFFTKNEDYAVPDVPFAIPTSVERYGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSE   82 (423)
T ss_pred             CCcceEEEEEEecccccCCCCcceeccCcceEccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChh
Confidence            3468999999865  4789999999999999999999999999888    789999999999999999999999999999


Q ss_pred             eEEEEEEeecceEeEEecccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEc
Q 010816           80 KVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS  159 (500)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s  159 (500)
                      .+++|+|...    +.|+..+  .---|.+.|.++...  +++++||++||.++|||.. |+..+.+.||.++|.+++|.
T Consensus        83 ~~leIEYv~~----~~aP~pl--~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v  153 (423)
T KOG0313|consen   83 EILEIEYVEA----ITAPKPL--QCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWV  153 (423)
T ss_pred             heeEEEEEEe----cCCCCcc--ccccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEE
Confidence            9999999743    2222211  112489999999987  8899999999999999986 45667788999999988885


Q ss_pred             CC---CCEEEEEeCCCeEEEEeCCCCCcccc---cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-----
Q 010816          160 AD---GKHLVSGSKAGELQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-----  228 (500)
Q Consensus       160 ~~---~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~-----  228 (500)
                      ..   ...+++++.|.++++|..+.+.....   .-.||+..|.+++-.+     ++.+|++||.|.+++||+..     
T Consensus       154 ~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-----sgtr~~SgS~D~~lkiWs~~~~~~~  228 (423)
T KOG0313|consen  154 IKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-----SGTRFCSGSWDTMLKIWSVETDEED  228 (423)
T ss_pred             ecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-----CCCeEEeecccceeeecccCCCccc
Confidence            32   34699999999999999887753211   1249999999987554     56799999999999999932     


Q ss_pred             --------------------CCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEE
Q 010816          229 --------------------LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA  288 (500)
Q Consensus       229 --------------------~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~  288 (500)
                                          ++..+..+.||+.+|.++.|++...++++++|.+|+.||+.+++....+..         
T Consensus       229 ~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~---------  299 (423)
T KOG0313|consen  229 ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT---------  299 (423)
T ss_pred             cccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec---------
Confidence                                123466788999999999999988999999999999999988765443221         


Q ss_pred             ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEE
Q 010816          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF  368 (500)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~  368 (500)
                                                                                             ...++|+++
T Consensus       300 -----------------------------------------------------------------------~ksl~~i~~  308 (423)
T KOG0313|consen  300 -----------------------------------------------------------------------NKSLNCISY  308 (423)
T ss_pred             -----------------------------------------------------------------------CcceeEeec
Confidence                                                                                   134678999


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCc---eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEE
Q 010816          369 SPDGQWVASASFDKSIKLWNGTTGK---FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLL  444 (500)
Q Consensus       369 sp~g~~lasgs~Dg~i~lwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l  444 (500)
                      +|..++||+|+.|+.|++||.+++.   ....|.||.+.|..+                           .|+|.. .+|
T Consensus       309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv---------------------------kwsp~~~~~~  361 (423)
T KOG0313|consen  309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV---------------------------KWSPTNEFQL  361 (423)
T ss_pred             ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe---------------------------ecCCCCceEE
Confidence            9999999999999999999998753   346788999888776                           467765 578


Q ss_pred             EEEECCCcEEEEECCCcc-ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          445 LSGSKDSTLKVWDIRTQK-LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       445 ~s~s~d~~v~iwd~~~~~-~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      ++|+.|+++++||+++.+ .+..+.+|.++|++++|+. +..|+|||.|++|+|+.+
T Consensus       362 ~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  362 VSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             EEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecc
Confidence            899999999999999877 8899999999999999985 679999999999999864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.7e-50  Score=354.47  Aligned_cols=282  Identities=28%  Similarity=0.508  Sum_probs=260.7

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCC
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      |-+.+|..+.|++|++.|||||.+|.+++|+..+...+..+.||...|.++.|+|.  +..+|||+.||++++|+..+..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            66889999999999999999999999999999999888999999999999999997  5689999999999999998765


Q ss_pred             cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCe
Q 010816          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCT  262 (500)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~  262 (500)
                      .+. .+.+|...|..++|+|     +++.+++++.|.+-++||+++++.+....||...|.+++|.+||. ++||+.|..
T Consensus       253 ~l~-~l~gH~~RVs~VafHP-----sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~  326 (459)
T KOG0272|consen  253 PLQ-DLEGHLARVSRVAFHP-----SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL  326 (459)
T ss_pred             chh-hhhcchhhheeeeecC-----CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccch
Confidence            544 5889999999999987     567899999999999999999999888899999999999999986 567999999


Q ss_pred             EEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEE
Q 010816          263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (500)
Q Consensus       263 i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~  342 (500)
                      -||||+++|+++..+                                                                 
T Consensus       327 ~RvWDlRtgr~im~L-----------------------------------------------------------------  341 (459)
T KOG0272|consen  327 GRVWDLRTGRCIMFL-----------------------------------------------------------------  341 (459)
T ss_pred             hheeecccCcEEEEe-----------------------------------------------------------------
Confidence            999999998765433                                                                 


Q ss_pred             EEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCc
Q 010816          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF  422 (500)
Q Consensus       343 ~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  422 (500)
                                    .+|.+.|.+|+|+|+|..|||||.|++++|||++..+.+.++.+|..-|..|+|            
T Consensus       342 --------------~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~------------  395 (459)
T KOG0272|consen  342 --------------AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKY------------  395 (459)
T ss_pred             --------------cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEe------------
Confidence                          357778899999999999999999999999999999999999999999988865            


Q ss_pred             eeeeeccccceeeEEcC-CCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          423 YCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       423 ~~~~~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                                     +| .|.+|+++|.|++++||..++..+++.+.||.++|.+++.+||+++|+|++.|.++++|.
T Consensus       396 ---------------~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  396 ---------------SPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ---------------cccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence                           66 789999999999999999999999999999999999999999999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6e-50  Score=346.60  Aligned_cols=287  Identities=32%  Similarity=0.573  Sum_probs=256.2

Q ss_pred             eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (500)
Q Consensus       143 ~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v  222 (500)
                      ...+.||..+|.|++|+|+|+.|++|+.|.++|+||+.+..+.. ...+|..+|.+++|+|     ++..+++|+.||+|
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~-t~KgH~~WVlcvawsP-----Dgk~iASG~~dg~I  181 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF-TCKGHKNWVLCVAWSP-----DGKKIASGSKDGSI  181 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce-eecCCccEEEEEEECC-----CcchhhccccCCeE
Confidence            34567999999999999999999999999999999998876543 5789999999999998     56799999999999


Q ss_pred             EEEECCCCeEE-EEecCccccEEEEEeCCC------CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816          223 RIWDVSLRKCV-ICLSGHTLAVTCVKWGGD------GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (500)
Q Consensus       223 ~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~------~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (500)
                      ++||..+++++ ..+.+|...|++++|.|-      ..|++++.||+|+|||+..++++..+.+|..+|+|+.+-.    
T Consensus       182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG----  257 (480)
T KOG0271|consen  182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG----  257 (480)
T ss_pred             EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC----
Confidence            99999988764 578999999999999652      3699999999999999999999999999999999998753    


Q ss_pred             eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEEC------
Q 010816          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS------  369 (500)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~s------  369 (500)
                                                       ...+++||.|++|++|+... ......+.||..+|+.++.|      
T Consensus       258 ---------------------------------~gliySgS~DrtIkvw~a~d-G~~~r~lkGHahwvN~lalsTdy~LR  303 (480)
T KOG0271|consen  258 ---------------------------------EGLIYSGSQDRTIKVWRALD-GKLCRELKGHAHWVNHLALSTDYVLR  303 (480)
T ss_pred             ---------------------------------CceEEecCCCceEEEEEccc-hhHHHhhcccchheeeeeccchhhhh
Confidence                                             34789999999999999654 34566789999999999877      


Q ss_pred             -----CCCC-------------------------EEEEEeCCCcEEEEeCCC-CceEEEEeCCcccEEEEEeeeeeeecC
Q 010816          370 -----PDGQ-------------------------WVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRY  418 (500)
Q Consensus       370 -----p~g~-------------------------~lasgs~Dg~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~  418 (500)
                           |.++                         .|++||.|.++.+|+... .+++....||...|+.+          
T Consensus       304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V----------  373 (480)
T KOG0271|consen  304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHV----------  373 (480)
T ss_pred             ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeE----------
Confidence                 3343                         499999999999999765 45778889999999888          


Q ss_pred             CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                                       .||||++++|+||.|+.|++||.++|+.+..++||-+.|+.++||.|.+.|+|||.|.++++|
T Consensus       374 -----------------~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw  436 (480)
T KOG0271|consen  374 -----------------SFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVW  436 (480)
T ss_pred             -----------------EECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEE
Confidence                             569999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 010816          499 MG  500 (500)
Q Consensus       499 ~~  500 (500)
                      +.
T Consensus       437 ~V  438 (480)
T KOG0271|consen  437 DV  438 (480)
T ss_pred             Ee
Confidence            74

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.5e-47  Score=319.40  Aligned_cols=295  Identities=29%  Similarity=0.483  Sum_probs=262.6

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      .+|+||.+.|.++.|++|.++|++++.||.+.|||.-+....+.+.-...+|..++|+|.|+++|+|+.|+...||++.+
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~  128 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST  128 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence            57899999999999999999999999999999999988888877877889999999999999999999999999999864


Q ss_pred             CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCC
Q 010816          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC  261 (500)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg  261 (500)
                      ....                                  +.+        +....+.+|+..++|+.|..|+.|+|++.|.
T Consensus       129 ~d~~----------------------------------g~~--------~v~r~l~gHtgylScC~f~dD~~ilT~SGD~  166 (343)
T KOG0286|consen  129 RDAE----------------------------------GNV--------RVSRELAGHTGYLSCCRFLDDNHILTGSGDM  166 (343)
T ss_pred             cccc----------------------------------ccc--------eeeeeecCccceeEEEEEcCCCceEecCCCc
Confidence            3211                                  111        1123467999999999999999999999999


Q ss_pred             eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (500)
Q Consensus       262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v  341 (500)
                      +..+||+++|+.++.+.+|...|.+++++|.                                   .++.+++|+.|+..
T Consensus       167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~-----------------------------------~~ntFvSg~cD~~a  211 (343)
T KOG0286|consen  167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPS-----------------------------------DGNTFVSGGCDKSA  211 (343)
T ss_pred             eEEEEEcccceEEEEecCCcccEEEEecCCC-----------------------------------CCCeEEecccccce
Confidence            9999999999999999999999999998873                                   24689999999999


Q ss_pred             EEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCC
Q 010816          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN  421 (500)
Q Consensus       342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  421 (500)
                      ++||++.. ...+.+.+|+..|++|.|.|+|.-+++|+.|++.|+||++..+.+.+|.. ..                  
T Consensus       212 klWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~-~~------------------  271 (343)
T KOG0286|consen  212 KLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH-DS------------------  271 (343)
T ss_pred             eeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc-Cc------------------
Confidence            99999876 56778999999999999999999999999999999999999988887762 11                  


Q ss_pred             ceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       422 ~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                            ..+.++.++||..|++|.+|..|.++.+||.-.++....+.||..+|.+|..+|||..++|||.|.++|||.
T Consensus       272 ------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  272 ------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ------ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence                  123344557899999999999999999999999999999999999999999999999999999999999994

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.9e-44  Score=334.42  Aligned_cols=374  Identities=25%  Similarity=0.432  Sum_probs=294.4

Q ss_pred             ccccccccC-CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCC--EEEEEeCCCeE
Q 010816           98 NRCSATIAG-HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGEL  174 (500)
Q Consensus        98 ~~~~~~~~g-h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--~l~s~~~d~~i  174 (500)
                      ..+....++ |++||.-++|+|.+.+||+|+.|+.++|||+..+.+.+.++||.+.|.++.|+|+-.  .|++|..|+++
T Consensus        94 gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v  173 (775)
T KOG0319|consen   94 GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTV  173 (775)
T ss_pred             chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceE
Confidence            355566666 999999999999999999999999999999999999999999999999999999754  58999999999


Q ss_pred             EEEeCCCCCcccccccCcccceEEEEeeeeecC-----------------------------------------CCCceE
Q 010816          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN-----------------------------------------APCRRF  213 (500)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------------------------------~~~~~~  213 (500)
                      ++||++++.........|...|+++.+.+...+                                         ..+..+
T Consensus       174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~  253 (775)
T KOG0319|consen  174 RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI  253 (775)
T ss_pred             EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence            999999776544556778888888877642110                                         012356


Q ss_pred             EEEeCCCcEEEEECCCCeEE------------------------------------------------------------
Q 010816          214 VSASKDGDARIWDVSLRKCV------------------------------------------------------------  233 (500)
Q Consensus       214 ~s~s~dg~v~iwd~~~~~~~------------------------------------------------------------  233 (500)
                      +++|.+|.+++||.+.++++                                                            
T Consensus       254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG  333 (775)
T KOG0319|consen  254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG  333 (775)
T ss_pred             EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence            77777777777775443221                                                            


Q ss_pred             -------------------------EEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCC----eeEEEeecCCce
Q 010816          234 -------------------------ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG----KLIRELKGHGHW  283 (500)
Q Consensus       234 -------------------------~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~----~~~~~~~~~~~~  283 (500)
                                               ..+.||+..|.++....+| .|++|+.|.++++|.+..+    .++....+|.+.
T Consensus       334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s  413 (775)
T KOG0319|consen  334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS  413 (775)
T ss_pred             CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence                                     1124677788888733344 8999999999999976433    234566789999


Q ss_pred             EEEEEecCcc--eeeeccccCCCCCCCCHH--------HHH----HHHHH-hhhhhc-CCCCcEEEEeeCCCeEEEEcCC
Q 010816          284 VNSLALSTEY--ALRTGAFDHTGKQYSSPE--------EMK----KAALE-RYNKIK-GNAPERLVSGSDDFTMFLWEPA  347 (500)
Q Consensus       284 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~----~~~~~-~~~~~~-~~~~~~~~s~s~d~~v~~wd~~  347 (500)
                      |.+++.+..+  .+.+++.|.+.+.+.-+.        ...    ....+ -.+.+. .++...+++||.|.+.++|++.
T Consensus       414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le  493 (775)
T KOG0319|consen  414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE  493 (775)
T ss_pred             cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence            9999886543  344455554443332221        010    01111 111222 2334578999999999999987


Q ss_pred             CCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeee
Q 010816          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD  427 (500)
Q Consensus       348 ~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  427 (500)
                       .......+.||...|.||.|+|..+.+||+|.|++|+||.+.+..|+++|.||...|....                  
T Consensus       494 -~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~------------------  554 (775)
T KOG0319|consen  494 -QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS------------------  554 (775)
T ss_pred             -CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee------------------
Confidence             4455678899999999999999999999999999999999999999999999999998874                  


Q ss_pred             ccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       428 ~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                               |-.+|.+|+|++.||.++||++++.++..++.+|+++||+++-+|.+..++|||.||+|.+|.
T Consensus       555 ---------F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  555 ---------FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             ---------eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence                     457899999999999999999999999999999999999999999999999999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.6e-42  Score=310.94  Aligned_cols=388  Identities=22%  Similarity=0.398  Sum_probs=301.1

Q ss_pred             eeeEEEEEEeecceEeEEe-------------cccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010816           78 VEKVLSIVYQPQAVFRIRP-------------VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF  144 (500)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~  144 (500)
                      ...++...+.|...||+..             +-+...++..|+.-|.|+.|+|||.++||++.||.|.|||-.+++.+.
T Consensus       147 Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg  226 (603)
T KOG0318|consen  147 SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG  226 (603)
T ss_pred             ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEE
Confidence            4456777788877777632             223445677899999999999999999999999999999999999988


Q ss_pred             Eec---CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcc--cceEEEEeeeeecCCCCceEEEEeCC
Q 010816          145 KCT---GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK--KWITGISWEPVHLNAPCRRFVSASKD  219 (500)
Q Consensus       145 ~~~---~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~s~s~d  219 (500)
                      .+.   +|.+.|.+++|+||++.++++|.|.++++||+.+.+.......+.+  ....++-|.       ...+++.+.+
T Consensus       227 ~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-------kd~lItVSl~  299 (603)
T KOG0318|consen  227 ELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-------KDHLITVSLS  299 (603)
T ss_pred             EecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-------CCeEEEEEcC
Confidence            887   8999999999999999999999999999999999877654443333  344455564       2479999999


Q ss_pred             CcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEe-ecCCceEEEEEecCcceeee
Q 010816          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRT  297 (500)
Q Consensus       220 g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~  297 (500)
                      |++.+++......+..+.||+..|+++..++++ .|++|+.||.|.-||..+|..-+.. +.|...|..++.+....+.+
T Consensus       300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t  379 (603)
T KOG0318|consen  300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT  379 (603)
T ss_pred             cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence            999999999999999999999999999999987 6999999999999999887655443 56777777777766444444


Q ss_pred             ccccCCCCCC-------C---------CHHHHH--------------------------HHHH-Hhhhh-hcCCCCcEEE
Q 010816          298 GAFDHTGKQY-------S---------SPEEMK--------------------------KAAL-ERYNK-IKGNAPERLV  333 (500)
Q Consensus       298 ~~~~~~~~~~-------~---------~~~~~~--------------------------~~~~-~~~~~-~~~~~~~~~~  333 (500)
                      ..+|..-+..       .         .|....                          ...+ +.... ........++
T Consensus       380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va  459 (603)
T KOG0318|consen  380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA  459 (603)
T ss_pred             EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence            4433221110       0         000000                          0000 00000 0123356788


Q ss_pred             EeeCCCeEEEEcCCCCC-CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEE-EEeCCcccEEEEEee
Q 010816          334 SGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQIRFE  411 (500)
Q Consensus       334 s~s~d~~v~~wd~~~~~-~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~-~~~~h~~~v~~~~~~  411 (500)
                      .|+.|+.++++.+.... .....+..|...|++++||||+.+||+|...+.+.+||+.+.+... .+.-|...|.++   
T Consensus       460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~---  536 (603)
T KOG0318|consen  460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV---  536 (603)
T ss_pred             EecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE---
Confidence            99999999999986543 3445678899999999999999999999999999999999987632 334488888777   


Q ss_pred             eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc-cccccCcccCEEEEEEcCCCCEEEEEe
Q 010816          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDWSPDGEKVASGG  490 (500)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~dg~~l~s~~  490 (500)
                                              +|+|+..++|+||.|..|.||++..... +.....|...|+.|.|- |...++|.|
T Consensus       537 ------------------------aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG  591 (603)
T KOG0318|consen  537 ------------------------AWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSG  591 (603)
T ss_pred             ------------------------EeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEecc
Confidence                                    8999999999999999999999987543 33445688889999996 457899999


Q ss_pred             CCCcEEEecC
Q 010816          491 KDRVLKLWMG  500 (500)
Q Consensus       491 ~D~~v~iW~~  500 (500)
                      .|..||+|..
T Consensus       592 ~Da~iK~W~v  601 (603)
T KOG0318|consen  592 QDANIKVWNV  601 (603)
T ss_pred             CcceeEEecc
Confidence            9999999974

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-44  Score=318.16  Aligned_cols=253  Identities=31%  Similarity=0.539  Sum_probs=228.4

Q ss_pred             eEEeccc--ccccccCCcccEEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEE
Q 010816           93 RIRPVNR--CSATIAGHTEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG  168 (500)
Q Consensus        93 ~~~~~~~--~~~~~~gh~~~V~~~~~sp~--~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~  168 (500)
                      ++|....  ...+|.||++.|.++.|+|.  +..||||+.||++++|++++..++..+.+|...|..++|+|+|++|+|+
T Consensus       200 kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta  279 (459)
T KOG0272|consen  200 KVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA  279 (459)
T ss_pred             eEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec
Confidence            4444443  45678999999999999997  5689999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEe
Q 010816          169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW  248 (500)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~  248 (500)
                      +.|.+-++||++++.... ...||...|.+++|+|     ++..+++||.|..-||||++++.|+..+.||..+|.++.|
T Consensus       280 sfD~tWRlWD~~tk~ElL-~QEGHs~~v~~iaf~~-----DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~f  353 (459)
T KOG0272|consen  280 SFDSTWRLWDLETKSELL-LQEGHSKGVFSIAFQP-----DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAF  353 (459)
T ss_pred             ccccchhhcccccchhhH-hhcccccccceeEecC-----CCceeeccCccchhheeecccCcEEEEecccccceeeEeE
Confidence            999999999999987543 4689999999999987     5678999999999999999999999999999999999999


Q ss_pred             CCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816          249 GGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (500)
Q Consensus       249 ~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (500)
                      +|+|+ ++||+.|++++|||++..+.                                                      
T Consensus       354 sPNGy~lATgs~Dnt~kVWDLR~r~~------------------------------------------------------  379 (459)
T KOG0272|consen  354 SPNGYHLATGSSDNTCKVWDLRMRSE------------------------------------------------------  379 (459)
T ss_pred             CCCceEEeecCCCCcEEEeeeccccc------------------------------------------------------
Confidence            99996 88999999999999875332                                                      


Q ss_pred             CCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816          328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (500)
Q Consensus       328 ~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~  406 (500)
                                               ...+.+|.+.|+.|.|+| .|.+|+|+|+|++++||...++.+++++.||++.|.
T Consensus       380 -------------------------ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~  434 (459)
T KOG0272|consen  380 -------------------------LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI  434 (459)
T ss_pred             -------------------------ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence                                     233457888899999999 689999999999999999999999999999999998


Q ss_pred             EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD  457 (500)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd  457 (500)
                      ++                           ..++|++++++++.|+++|+|.
T Consensus       435 s~---------------------------Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  435 SL---------------------------DISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EE---------------------------EeccCCceEEEeccCceeeecc
Confidence            88                           4589999999999999999995

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-43  Score=305.69  Aligned_cols=306  Identities=29%  Similarity=0.459  Sum_probs=272.3

Q ss_pred             ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (500)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w  177 (500)
                      .++...+.||..+|+.+-|+|+...+++++.|++|++||..+++....++||++.|..++|+..|++|++++.|=.+++|
T Consensus        98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen   98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW  177 (406)
T ss_pred             CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence            34566778999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEE
Q 010816          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYT  256 (500)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t  256 (500)
                      |..+-......+.+|+..|.++.|.|..     ..+++++.|.+|+.|++.++-|++++.+|...|..+..+.||. +++
T Consensus       178 d~~~~~~c~ks~~gh~h~vS~V~f~P~g-----d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As  252 (406)
T KOG0295|consen  178 DFDTFFRCIKSLIGHEHGVSSVFFLPLG-----DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS  252 (406)
T ss_pred             eHHHHHHHHHHhcCcccceeeEEEEecC-----CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEe
Confidence            9876422234577899999999999863     5899999999999999999999999999999999999999986 667


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                      ++.|.++++|-+.++++...++.|+.+|.++++.|..+...                                -..++++
T Consensus       253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~--------------------------------i~~at~~  300 (406)
T KOG0295|consen  253 CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS--------------------------------ISEATGS  300 (406)
T ss_pred             cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc--------------------------------hhhccCC
Confidence            99999999999999988899999999999999887532100                                0011111


Q ss_pred             CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF  416 (500)
Q Consensus       337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  416 (500)
                      .                                ..++++++++.|++|++||+.+|.++.++.||...|..+        
T Consensus       301 ~--------------------------------~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~--------  340 (406)
T KOG0295|consen  301 T--------------------------------NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGV--------  340 (406)
T ss_pred             C--------------------------------CCccEEEeecccceEEEEeccCCeEEEEEecccceeeee--------
Confidence            1                                036789999999999999999999999999999999888        


Q ss_pred             cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK  496 (500)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~  496 (500)
                                         +|+|.|+||+++..|+++++||++.+++++.+..|..-|++++|+.+-.+++||+-|.+++
T Consensus       341 -------------------af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~K  401 (406)
T KOG0295|consen  341 -------------------AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVK  401 (406)
T ss_pred             -------------------EEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceee
Confidence                               5699999999999999999999999999999999999999999999999999999999999


Q ss_pred             Eec
Q 010816          497 LWM  499 (500)
Q Consensus       497 iW~  499 (500)
                      +|+
T Consensus       402 vwE  404 (406)
T KOG0295|consen  402 VWE  404 (406)
T ss_pred             eee
Confidence            997

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.5e-42  Score=297.88  Aligned_cols=329  Identities=24%  Similarity=0.399  Sum_probs=259.0

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      ...++.+|++.|++++.+|+.+++|||+.|....+|++.++.....+.+|...|+|+.|+.||.+||||+.+|.|++|+.
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~  258 (500)
                      .++..... +...-..+.=+.|+|     ....|++|+.||.+.+|.+..+...+.+.||+.+++|-.|.|+| .++++.
T Consensus       136 stg~~~~~-~~~e~~dieWl~WHp-----~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy  209 (399)
T KOG0296|consen  136 STGGEQWK-LDQEVEDIEWLKWHP-----RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY  209 (399)
T ss_pred             ccCceEEE-eecccCceEEEEecc-----cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe
Confidence            98865433 222222333344555     34689999999999999999988888999999999999999998 588999


Q ss_pred             CCCeEEEEeCCCCeeEEEeecCC-ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          259 QDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      .||+|++||+.+++.+..+.... ....++.+...                                    +..++.|+.
T Consensus       210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~------------------------------------~~~~~~g~~  253 (399)
T KOG0296|consen  210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLA------------------------------------GSTLTKGNS  253 (399)
T ss_pred             cCceEEEEecCCCceeEEecccccCcCCccccccc------------------------------------cceeEeccC
Confidence            99999999999998877765322 12222222211                                    233445555


Q ss_pred             CCeEEEEcCCCCCC-------CceeeecccCcEEEEEE---CCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816          338 DFTMFLWEPAVSKQ-------PKTRMTGHQQLVNHVYF---SPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (500)
Q Consensus       338 d~~v~~wd~~~~~~-------~~~~~~~h~~~v~~l~~---sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~  407 (500)
                      ++.+++-.....+.       ......++...+.||.+   +..=.+.|+|+.||+|.|||+.+.++-..+ .|..+|.+
T Consensus       254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~  332 (399)
T KOG0296|consen  254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTK  332 (399)
T ss_pred             CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEE
Confidence            55444433221110       11112244445555554   445678899999999999999876654443 47777877


Q ss_pred             EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEE
Q 010816          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA  487 (500)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~  487 (500)
                      +.|                           -+ ..+|++++.||.|+.||.++|+++..+.||...|++++.+|++++++
T Consensus       333 l~w---------------------------~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vv  384 (399)
T KOG0296|consen  333 LKW---------------------------LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVV  384 (399)
T ss_pred             EEE---------------------------cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEE
Confidence            754                           44 67999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEec
Q 010816          488 SGGKDRVLKLWM  499 (500)
Q Consensus       488 s~~~D~~v~iW~  499 (500)
                      |+|.|++.++++
T Consensus       385 T~s~D~~a~VF~  396 (399)
T KOG0296|consen  385 TVSDDNTALVFE  396 (399)
T ss_pred             EecCCCeEEEEe
Confidence            999999999986

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.1e-41  Score=300.15  Aligned_cols=322  Identities=28%  Similarity=0.494  Sum_probs=280.7

Q ss_pred             cCCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCC--c-----eeEE---ecC----CCCCEEEEEEcCCCCEEEEEe
Q 010816          105 AGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQ--T-----PMFK---CTG----HKNWVLCIAWSADGKHLVSGS  169 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~--~-----~~~~---~~~----h~~~v~~v~~s~~~~~l~s~~  169 (500)
                      ..|..+|.+++|+|-.. .+|+|+.|-+.++|++...  .     .+..   ..+    -+..|++++|+.+|..||+|+
T Consensus       175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~  254 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS  254 (524)
T ss_pred             ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence            34999999999999877 8999999999999998641  1     0100   111    246799999999999999999


Q ss_pred             CCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeC
Q 010816          170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG  249 (500)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~  249 (500)
                      .||.+++|+...+.  ...+..|+++|.++.|+.     .+.++++++.|+++.+||..++.+...+.-|..+-..+.|-
T Consensus       255 ~~G~~riw~~~G~l--~~tl~~HkgPI~slKWnk-----~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~  327 (524)
T KOG0273|consen  255 EDGEARIWNKDGNL--ISTLGQHKGPIFSLKWNK-----KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ  327 (524)
T ss_pred             cCcEEEEEecCchh--hhhhhccCCceEEEEEcC-----CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence            99999999975432  235788999999999975     45689999999999999999999999888888887789999


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816          250 GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (500)
Q Consensus       250 ~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (500)
                      .+..+++++.|+.|+|+.+...+++.++.+|...|.++.+.|.                                    +
T Consensus       328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t------------------------------------g  371 (524)
T KOG0273|consen  328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT------------------------------------G  371 (524)
T ss_pred             cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC------------------------------------C
Confidence            8889999999999999999988999999999999999998775                                    3


Q ss_pred             cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC---------EEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ---------WVASASFDKSIKLWNGTTGKFVAVFRG  400 (500)
Q Consensus       330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~---------~lasgs~Dg~i~lwd~~~~~~~~~~~~  400 (500)
                      ..|+++|+|++++||.... ......+.+|...|..+.|+|+|.         .|++++.|++|++||+..|.++.+|..
T Consensus       372 ~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k  450 (524)
T KOG0273|consen  372 SLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK  450 (524)
T ss_pred             ceEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc
Confidence            4689999999999998543 345667889999999999999654         799999999999999999999999999


Q ss_pred             CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEc
Q 010816          401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS  480 (500)
Q Consensus       401 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s  480 (500)
                      |..+|+++                           +|+|+|+++|+|+.||.|++|+++++++.+...+ .+.|+.|+|+
T Consensus       451 H~~pVysv---------------------------afS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn  502 (524)
T KOG0273|consen  451 HQEPVYSV---------------------------AFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWN  502 (524)
T ss_pred             CCCceEEE---------------------------EecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEc
Confidence            99999998                           5699999999999999999999999999988876 4569999999


Q ss_pred             CCCCEEEEEeCCCcEEEe
Q 010816          481 PDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       481 ~dg~~l~s~~~D~~v~iW  498 (500)
                      .+|.+|..+-.|+.+.+-
T Consensus       503 ~~G~kl~~~~sd~~vcvl  520 (524)
T KOG0273|consen  503 AAGDKLGACASDGSVCVL  520 (524)
T ss_pred             CCCCEEEEEecCCCceEE
Confidence            999999999999888764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.9e-41  Score=279.12  Aligned_cols=285  Identities=29%  Similarity=0.521  Sum_probs=235.8

Q ss_pred             cccccCCcccEEEEEEcCC-CCeEEEEeCCCcEEEEeCC-----CCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816          101 SATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLN-----TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~-----~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i  174 (500)
                      ..++.||++.|+.++..+. ...+.+++.|.++.+|++.     .+.++..++||+..|..+..++||++.++++.|+++
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l   87 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL   87 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence            3578899999999999987 5678899999999999875     366788899999999999999999999999999999


Q ss_pred             EEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc--cccEEEEEeCCCC
Q 010816          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH--TLAVTCVKWGGDG  252 (500)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~  252 (500)
                      ++||+.+|+.. +.+.+|...|.++++++     +.+++++||.|.++++|+.-. .|..++..+  ...|+|+.|+|+.
T Consensus        88 rlWDl~~g~~t-~~f~GH~~dVlsva~s~-----dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen   88 RLWDLATGEST-RRFVGHTKDVLSVAFST-----DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             EEEEecCCcEE-EEEEecCCceEEEEecC-----CCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCC
Confidence            99999998554 46899999999999876     557899999999999999754 455555443  7889999999863


Q ss_pred             ---eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816          253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (500)
Q Consensus       253 ---~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (500)
                         +|+++++|++|++||+++-+..                                                       
T Consensus       161 ~~p~Ivs~s~DktvKvWnl~~~~l~-------------------------------------------------------  185 (315)
T KOG0279|consen  161 SNPIIVSASWDKTVKVWNLRNCQLR-------------------------------------------------------  185 (315)
T ss_pred             CCcEEEEccCCceEEEEccCCcchh-------------------------------------------------------
Confidence               6889999999999998753221                                                       


Q ss_pred             cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEE
Q 010816          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR  409 (500)
Q Consensus       330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~  409 (500)
                                              ..+.||+..++.+++||||.+.++|+.||.+.+||+..++.+..+ +|...|.++ 
T Consensus       186 ------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl-  239 (315)
T KOG0279|consen  186 ------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSL-  239 (315)
T ss_pred             ------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeE-
Confidence                                    223468888999999999999999999999999999999987665 456666666 


Q ss_pred             eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC----c-----ccCEEEEEEc
Q 010816          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG----H-----ADEVFAVDWS  480 (500)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~----h-----~~~V~~l~~s  480 (500)
                                                +|+|+.-+|+.+ .+..|+|||+.++.++..+.-    .     .-.-.+++|+
T Consensus       240 --------------------------~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws  292 (315)
T KOG0279|consen  240 --------------------------CFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS  292 (315)
T ss_pred             --------------------------EecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEc
Confidence                                      568877666554 455599999999887765432    1     1123678999


Q ss_pred             CCCCEEEEEeCCCcEEEecC
Q 010816          481 PDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       481 ~dg~~l~s~~~D~~v~iW~~  500 (500)
                      +||+.|++|-.|+.|++|+.
T Consensus       293 ~dG~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  293 ADGQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             CCCcEEEeeecCCcEEEEEe
Confidence            99999999999999999973

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.7e-41  Score=284.39  Aligned_cols=286  Identities=26%  Similarity=0.538  Sum_probs=240.6

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      .+.||.+.|..+.|+|+|..||||+.|..|.+|++.. -+....+++|.+.|..+.|++|+..|++++.|++++.||.++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            4689999999999999999999999999999999654 344567889999999999999999999999999999999999


Q ss_pred             CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCC
Q 010816          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD  260 (500)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~d  260 (500)
                      |+... ...+|...|+++.  |...+  ...+.+++.|+++|+||++...+++++. ....++++.|..++ .+++|+-|
T Consensus       122 G~~~r-k~k~h~~~vNs~~--p~rrg--~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggId  195 (338)
T KOG0265|consen  122 GKRIR-KHKGHTSFVNSLD--PSRRG--PQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGID  195 (338)
T ss_pred             ceeee-hhccccceeeecC--ccccC--CeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecccc
Confidence            98765 5788999998886  43322  2467789999999999999888777653 35678899997654 57888888


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      +.|++||++.+...                                                                  
T Consensus       196 n~ikvWd~r~~d~~------------------------------------------------------------------  209 (338)
T KOG0265|consen  196 NDIKVWDLRKNDGL------------------------------------------------------------------  209 (338)
T ss_pred             CceeeeccccCcce------------------------------------------------------------------
Confidence            88888887764332                                                                  


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC----CceEEEEeCCcc--cEEEEEeeeee
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----GKFVAVFRGHVG--PVYQIRFELIY  414 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~----~~~~~~~~~h~~--~v~~~~~~~~~  414 (500)
                                   ..+.||.+.|+.++.+|+|.++.+-+.|.++++||.+.    .+++.++.+|..  ..+.+.     
T Consensus       210 -------------~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~-----  271 (338)
T KOG0265|consen  210 -------------YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK-----  271 (338)
T ss_pred             -------------EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce-----
Confidence                         33457888899999999999999999999999999874    356778877532  222222     


Q ss_pred             eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV  494 (500)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~  494 (500)
                                          .+|+|+++.+.+|+.|..+++||......+..++||.+.|.+++|+|....|.+++.|++
T Consensus       272 --------------------cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~  331 (338)
T KOG0265|consen  272 --------------------CSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT  331 (338)
T ss_pred             --------------------eeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence                                279999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEe
Q 010816          495 LKLW  498 (500)
Q Consensus       495 v~iW  498 (500)
                      |++=
T Consensus       332 i~lg  335 (338)
T KOG0265|consen  332 IYLG  335 (338)
T ss_pred             eEee
Confidence            9873

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.9e-41  Score=315.07  Aligned_cols=364  Identities=25%  Similarity=0.422  Sum_probs=278.9

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~  184 (500)
                      +-.+.++++++.||+++|++++..+-+++|++.+++.+...+. |+.||.-++|+|.|.+|++|+.|+.+++||+..+.+
T Consensus        60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~  139 (775)
T KOG0319|consen   60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC  139 (775)
T ss_pred             cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence            3456799999999999999999999999999999988877777 999999999999999999999999999999987765


Q ss_pred             ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEEEEecCccccEEEEEeCCCC-eEEEEeCCCe
Q 010816          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT  262 (500)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~  262 (500)
                      . ..+.||.+.|.++.|+|....   ..+++|+.|+.+++||++. ..|+..+..|.+.|+++++.+|+ .++++++|..
T Consensus       140 t-h~fkG~gGvVssl~F~~~~~~---~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkv  215 (775)
T KOG0319|consen  140 T-HSFKGHGGVVSSLLFHPHWNR---WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKV  215 (775)
T ss_pred             E-EEecCCCceEEEEEeCCccch---hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcE
Confidence            4 468999999999999885432   5789999999999999984 44577788999999999998876 5888999999


Q ss_pred             EEEEeCCCCeeEEEeec----------CC--------------c------------------------------------
Q 010816          263 IKVWETTQGKLIRELKG----------HG--------------H------------------------------------  282 (500)
Q Consensus       263 i~lwd~~~~~~~~~~~~----------~~--------------~------------------------------------  282 (500)
                      +.+||+.+.+..+.+..          +.              .                                    
T Consensus       216 i~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~  295 (775)
T KOG0319|consen  216 IIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQ  295 (775)
T ss_pred             EEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCc
Confidence            99999743322111100          00              0                                    


Q ss_pred             -----------------------------eEEEEEec------------------------------------------C
Q 010816          283 -----------------------------WVNSLALS------------------------------------------T  291 (500)
Q Consensus       283 -----------------------------~v~~~~~~------------------------------------------~  291 (500)
                                                   .|..+.+-                                          .
T Consensus       296 ~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~  375 (775)
T KOG0319|consen  296 LLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS  375 (775)
T ss_pred             eEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc
Confidence                                         00000000                                          0


Q ss_pred             cc-eeeeccccCCCCCCCC-----HHHHHHHHHHhhhh-----hcCCCCcEEEEeeCCCeEEEEcCCCCCC--Cc-----
Q 010816          292 EY-ALRTGAFDHTGKQYSS-----PEEMKKAALERYNK-----IKGNAPERLVSGSDDFTMFLWEPAVSKQ--PK-----  353 (500)
Q Consensus       292 ~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~s~s~d~~v~~wd~~~~~~--~~-----  353 (500)
                      .+ .+.+++.|.+...+.-     ............+.     ........|+++|.|.++++|++...+.  ..     
T Consensus       376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~  455 (775)
T KOG0319|consen  376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC  455 (775)
T ss_pred             cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence            00 0000001111000100     00000000000000     0112345789999999999999865221  11     


Q ss_pred             -eeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccc
Q 010816          354 -TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM  432 (500)
Q Consensus       354 -~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (500)
                       .....|.+.|+||+++|+..++||||.|++.+||+++.++...++.||+..+++++                       
T Consensus       456 ~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~-----------------------  512 (775)
T KOG0319|consen  456 RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS-----------------------  512 (775)
T ss_pred             hHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEE-----------------------
Confidence             13457999999999999999999999999999999999999999999999999995                       


Q ss_pred             eeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          433 SLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       433 ~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                          |+|..+.+|++|.|++|+||.+.+..+++++.||...|..+.|-.+|+.|+|+++||.++||+.
T Consensus       513 ----Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  513 ----FSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             ----eccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence                5899999999999999999999999999999999999999999999999999999999999973

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.3e-40  Score=307.89  Aligned_cols=336  Identities=27%  Similarity=0.447  Sum_probs=273.1

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce--eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w  177 (500)
                      ..++..||-+.|+++.|+.|.++|++|+.|.++|||.++..+.  ...+.+|.++|...-|..+...+++.+.||.+.+|
T Consensus       137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W  216 (893)
T KOG0291|consen  137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVW  216 (893)
T ss_pred             EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEE
Confidence            4567789999999999999999999999999999999987665  45678999999999999999999999999999999


Q ss_pred             eCCC-----------------------CCc-----c-----cccccCcccceEEEEeeee--------------------
Q 010816          178 DPQT-----------------------GKP-----S-----GNPLSGHKKWITGISWEPV--------------------  204 (500)
Q Consensus       178 d~~~-----------------------~~~-----~-----~~~~~~~~~~v~~~~~~~~--------------------  204 (500)
                      ....                       ++.     .     +..+......|++.+|++.                    
T Consensus       217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~  296 (893)
T KOG0291|consen  217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD  296 (893)
T ss_pred             EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC
Confidence            7541                       100     0     0001111133444444331                    


Q ss_pred             -----------------ecCCCCceEEEEeC-CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEE
Q 010816          205 -----------------HLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKV  265 (500)
Q Consensus       205 -----------------~~~~~~~~~~s~s~-dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~l  265 (500)
                                       ..+..+..++.|+. -|.+-||+......+....+|...++|++++|||. ++||+.||.|+|
T Consensus       297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv  376 (893)
T KOG0291|consen  297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV  376 (893)
T ss_pred             ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence                             11223344554443 37888888888888888889999999999999984 788999999999


Q ss_pred             EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (500)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd  345 (500)
                      ||...|-+..++..|...|..+.++..                                    +..+++.|-||+|+.||
T Consensus       377 Wn~~SgfC~vTFteHts~Vt~v~f~~~------------------------------------g~~llssSLDGtVRAwD  420 (893)
T KOG0291|consen  377 WNTQSGFCFVTFTEHTSGVTAVQFTAR------------------------------------GNVLLSSSLDGTVRAWD  420 (893)
T ss_pred             EeccCceEEEEeccCCCceEEEEEEec------------------------------------CCEEEEeecCCeEEeee
Confidence            999999999999999999999988753                                    35689999999999999


Q ss_pred             CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC-cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCcee
Q 010816          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYC  424 (500)
Q Consensus       346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg-~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  424 (500)
                      +.............+-...|++..|.|.+++.|+.|. .|.+|++++|+++.++.||++||.++                
T Consensus       421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l----------------  484 (893)
T KOG0291|consen  421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL----------------  484 (893)
T ss_pred             ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee----------------
Confidence            8766554443344455678999999999999999986 69999999999999999999999888                


Q ss_pred             eeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc-cccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       425 ~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                                 +|+|.|..||+||+|++||+||+-.. ...++++ +...|++++|+|||+.|++++-||+|.+|+
T Consensus       485 -----------~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d  548 (893)
T KOG0291|consen  485 -----------SFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFD  548 (893)
T ss_pred             -----------EEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence                       56899999999999999999998553 2334443 567899999999999999999999999997

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.3e-39  Score=290.98  Aligned_cols=371  Identities=23%  Similarity=0.386  Sum_probs=284.5

Q ss_pred             ecccccccccCCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816           96 PVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (500)
Q Consensus        96 ~~~~~~~~~~gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i  174 (500)
                      ..+...-.+.||...|.+++|-|... +++||+.|++|.+|+-..-+-...+..|..-|.|+.|+|||.++++++.||++
T Consensus       135 DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki  214 (603)
T KOG0318|consen  135 DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI  214 (603)
T ss_pred             cCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence            34455677899999999999999876 69999999999999754444445567899999999999999999999999999


Q ss_pred             EEEeCCCCCccccc--ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc----cccEEEEEe
Q 010816          175 QCWDPQTGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH----TLAVTCVKW  248 (500)
Q Consensus       175 ~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h----~~~v~~~~~  248 (500)
                      .+||-.+|+.+...  -.+|++.|.+++|+|     +..+|+++|.|.++||||+.+.+++.++.-.    ...|-|+ |
T Consensus       215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsP-----Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l-W  288 (603)
T KOG0318|consen  215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSP-----DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL-W  288 (603)
T ss_pred             EEEcCCCccEEEEecCCCCccccEEEEEECC-----CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE-E
Confidence            99999999866532  348999999999998     5579999999999999999999998877532    2234444 4


Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcce-eeeccccCCCCCCCCHHHHHHHH--HHh---hh
Q 010816          249 GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKAA--LER---YN  322 (500)
Q Consensus       249 ~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~  322 (500)
                      - ++.|++.+-+|+|.+++...+..++.+.+|...|+++..+++.. +.++..|.....+..........  ...   ..
T Consensus       289 q-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~  367 (603)
T KOG0318|consen  289 Q-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK  367 (603)
T ss_pred             e-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE
Confidence            4 56799999999999999999999999999999999999998753 34444444322221111100000  001   11


Q ss_pred             hhcCCCCcEEEEeeCCCeEEEEcCCCC-----------CCCce-------------------eeeccc--------CcEE
Q 010816          323 KIKGNAPERLVSGSDDFTMFLWEPAVS-----------KQPKT-------------------RMTGHQ--------QLVN  364 (500)
Q Consensus       323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~-----------~~~~~-------------------~~~~h~--------~~v~  364 (500)
                      .+.....+.+++.+.|.++++.+....           .+|..                   .+..+.        -...
T Consensus       368 ~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s  447 (603)
T KOG0318|consen  368 GMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESS  447 (603)
T ss_pred             EEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccc
Confidence            122233356788888889988854211           11110                   111111        1256


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCceE--EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC
Q 010816          365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFV--AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR  442 (500)
Q Consensus       365 ~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  442 (500)
                      +++++|++..+|.|+.|+.|+||.+..+++.  ..+..|.++++.+                           ++|||+.
T Consensus       448 ~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v---------------------------aySpd~~  500 (603)
T KOG0318|consen  448 AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV---------------------------AYSPDGA  500 (603)
T ss_pred             eEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE---------------------------EECCCCc
Confidence            7999999999999999999999999876643  3566788888777                           6699999


Q ss_pred             EEEEEECCCcEEEEECCCcccccc-ccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          443 LLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       443 ~l~s~s~d~~v~iwd~~~~~~~~~-~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      +||+|...+.|.+||+.+.+.... +.-|..+|.+++|+|+.+.+||||-|-.|.||..
T Consensus       501 yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv  559 (603)
T KOG0318|consen  501 YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV  559 (603)
T ss_pred             EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence            999999999999999998877443 4449999999999999999999999999999973

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.7e-40  Score=268.75  Aligned_cols=289  Identities=24%  Similarity=0.411  Sum_probs=247.8

Q ss_pred             CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc-ccccccCcccceEEE
Q 010816          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGI  199 (500)
Q Consensus       121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~v~~~  199 (500)
                      -+|||++.|-+||+|...++.+..+++.....|..+...||++.||+|+. ..||+||+++++. ....+.+|++.|.++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            47999999999999999999999999877889999999999999998874 6899999998876 344678999999999


Q ss_pred             EeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEe-
Q 010816          200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL-  277 (500)
Q Consensus       200 ~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~-  277 (500)
                      .|..     +++.+.+||.||++||||++...|...+ .|.++|+++..+|+. .|++|.++|.|++||+....+...+ 
T Consensus        90 gF~~-----dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   90 GFQC-----DGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             EEee-----cCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence            8764     6788999999999999999997766554 577999999998864 6999999999999999987666655 


Q ss_pred             ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC-----CCC
Q 010816          278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-----KQP  352 (500)
Q Consensus       278 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~-----~~~  352 (500)
                      ......|.++.+.++                                    +..++.+...|+.++|++...     ..+
T Consensus       164 Pe~~~~i~sl~v~~d------------------------------------gsml~a~nnkG~cyvW~l~~~~~~s~l~P  207 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPD------------------------------------GSMLAAANNKGNCYVWRLLNHQTASELEP  207 (311)
T ss_pred             CCCCcceeeEEEcCC------------------------------------CcEEEEecCCccEEEEEccCCCccccceE
Confidence            344567888887775                                    346788888999999997543     235


Q ss_pred             ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecccc
Q 010816          353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCC  431 (500)
Q Consensus       353 ~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (500)
                      ..++..|..-+....+|||+++||++|.|.+++||+.++- +.-..+++|...+..-                       
T Consensus       208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc-----------------------  264 (311)
T KOG0315|consen  208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDC-----------------------  264 (311)
T ss_pred             hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEee-----------------------
Confidence            6678899999999999999999999999999999999887 5567789999888876                       


Q ss_pred             ceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEE
Q 010816          432 MSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW  479 (500)
Q Consensus       432 ~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~  479 (500)
                          +||.||++|++|+.|+.+|+|+++.++.++...||-....+++.
T Consensus       265 ----~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  265 ----AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             ----eeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence                56999999999999999999999999999999998776666654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.3e-40  Score=284.88  Aligned_cols=287  Identities=30%  Similarity=0.512  Sum_probs=251.5

Q ss_pred             cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      ++.+.+.||.+.|.|+++.|-.++++||+.|++|+|||+.++....++.||-..|..+++|+-..+|.+++.|+.|+.||
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            45578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEE
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG  257 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~  257 (500)
                      ++..+.++ ...||-..|.+++..|..     +.+++|+.|.++|+||+++...+.++.||..+|.++.+.+ |+.+++|
T Consensus       222 Le~nkvIR-~YhGHlS~V~~L~lhPTl-----dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~  295 (460)
T KOG0285|consen  222 LEYNKVIR-HYHGHLSGVYCLDLHPTL-----DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG  295 (460)
T ss_pred             chhhhhHH-HhccccceeEEEeccccc-----eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence            99877654 578999999999887743     5899999999999999999999999999999999998875 6789999


Q ss_pred             eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      +.|++|++||++.|+....                                                             
T Consensus       296 S~D~tvrlWDl~agkt~~t-------------------------------------------------------------  314 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMIT-------------------------------------------------------------  314 (460)
T ss_pred             cCCceEEEeeeccCceeEe-------------------------------------------------------------
Confidence            9999999999987764332                                                             


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                                        +..|...|.+++.+|....+|+++.| .|+-|++..|+.+..+.+|+.-++++..       
T Consensus       315 ------------------lt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~-------  368 (460)
T KOG0285|consen  315 ------------------LTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSV-------  368 (460)
T ss_pred             ------------------eecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeee-------
Confidence                              23466678899999999999999988 5999999999999889999998887732       


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc-----cC---cccCEEEEEEcCCCCEEEEE
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-----PG---HADEVFAVDWSPDGEKVASG  489 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----~~---h~~~V~~l~~s~dg~~l~s~  489 (500)
                                           .+..++++|+..|.+.+||.+++-..+..     +|   ....|++.+|...|.+|+||
T Consensus       369 ---------------------nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~  427 (460)
T KOG0285|consen  369 ---------------------NSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITG  427 (460)
T ss_pred             ---------------------ccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEec
Confidence                                 24568899999999999999987544322     22   23579999999999999999


Q ss_pred             eCCCcEEEec
Q 010816          490 GKDRVLKLWM  499 (500)
Q Consensus       490 ~~D~~v~iW~  499 (500)
                      ..|++|++|.
T Consensus       428 eadKtIk~~k  437 (460)
T KOG0285|consen  428 EADKTIKMYK  437 (460)
T ss_pred             cCCcceEEEe
Confidence            9999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.5e-41  Score=291.97  Aligned_cols=280  Identities=29%  Similarity=0.575  Sum_probs=239.7

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~  187 (500)
                      .-+|..+.|.|+|++|++|+..|...+|+..+-.--..++.|..+|+++.|+++|..++||+.+|.|++|++.-.. +..
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKI  174 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHH
Confidence            3479999999999999999999999999975433333456899999999999999999999999999999986433 222


Q ss_pred             cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEE
Q 010816          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVW  266 (500)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lw  266 (500)
                      ....|...|.+++|+|.+     ..|+++|.||+|+|||....+....+.||...|.|++|.|. +.|++||.|+.|++|
T Consensus       175 ~~ahh~eaIRdlafSpnD-----skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlW  249 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPND-----SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLW  249 (464)
T ss_pred             hhHhhhhhhheeccCCCC-----ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEee
Confidence            223444899999999843     48999999999999999998888889999999999999985 688999999999999


Q ss_pred             eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (500)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~  346 (500)
                      |.++|.++.+                                                                      
T Consensus       250 DprSg~cl~t----------------------------------------------------------------------  259 (464)
T KOG0284|consen  250 DPRSGSCLAT----------------------------------------------------------------------  259 (464)
T ss_pred             cCCCcchhhh----------------------------------------------------------------------
Confidence            9988765433                                                                      


Q ss_pred             CCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (500)
Q Consensus       347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  426 (500)
                               +.+|+..|..+.|+|++++|+++|.|..++++|+++-+.+.++++|+..+.++                  
T Consensus       260 ---------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~------------------  312 (464)
T KOG0284|consen  260 ---------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSL------------------  312 (464)
T ss_pred             ---------hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheee------------------
Confidence                     33567778999999999999999999999999999888899999999999887                  


Q ss_pred             eccccceeeEEcCC-CCEEEEEECCCcEEEEECCCccccc-cccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          427 DMSCCMSLYSWSAD-SRLLLSGSKDSTLKVWDIRTQKLKQ-DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       427 ~~~~~~~~~~~s~~-~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                               .|+|- ..+|.+|+.||.|..|.+...+.+. .-.+|...|++++|+|=|..|++|+.|.++++|.
T Consensus       313 ---------~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  313 ---------TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             ---------ccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence                     45664 4688999999999999988555443 3457999999999999999999999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=9.5e-40  Score=308.91  Aligned_cols=275  Identities=28%  Similarity=0.468  Sum_probs=238.0

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE
Q 010816          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (500)
Q Consensus       145 ~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i  224 (500)
                      ++..-...+.|..|++|+.+||.|-.|..|++|.+...+...  +++.       .+.        ..+=+++.|-.+.+
T Consensus       373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~--lk~~-------~~l--------~~~d~~sad~~~~~  435 (707)
T KOG0263|consen  373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK--LKDA-------SDL--------SNIDTESADVDVDM  435 (707)
T ss_pred             EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhcc--ccch-------hhh--------ccccccccchhhhh
Confidence            343445679999999999999999999999999987543211  1111       110        12223455556777


Q ss_pred             EECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCC
Q 010816          225 WDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT  303 (500)
Q Consensus       225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  303 (500)
                      -|.........+.||.++|....|+|+. .|++++.|+++|+|.+.+-.++-.+++|..+|..+.|+|-           
T Consensus       436 ~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-----------  504 (707)
T KOG0263|consen  436 LDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-----------  504 (707)
T ss_pred             ccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-----------
Confidence            7777777777799999999999999986 6889999999999999999999999999999999998874           


Q ss_pred             CCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCc
Q 010816          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS  383 (500)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~  383 (500)
                                               +-+|+++|.|++.++|.... ..+...+.+|-..|.|+.|+|+..++|+||.|.+
T Consensus       505 -------------------------GyYFatas~D~tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t  558 (707)
T KOG0263|consen  505 -------------------------GYYFATASHDQTARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT  558 (707)
T ss_pred             -------------------------ceEEEecCCCceeeeeeccc-CCchhhhcccccccceEEECCcccccccCCCCce
Confidence                                     34799999999999998654 4567788999999999999999999999999999


Q ss_pred             EEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc
Q 010816          384 IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL  463 (500)
Q Consensus       384 i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~  463 (500)
                      ||+||+.+|..++.|.||.++|.++                           +|||+|++|++|+.||.|++||+.+++.
T Consensus       559 VRlWDv~~G~~VRiF~GH~~~V~al---------------------------~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~  611 (707)
T KOG0263|consen  559 VRLWDVSTGNSVRIFTGHKGPVTAL---------------------------AFSPCGRYLASGDEDGLIKIWDLANGSL  611 (707)
T ss_pred             EEEEEcCCCcEEEEecCCCCceEEE---------------------------EEcCCCceEeecccCCcEEEEEcCCCcc
Confidence            9999999999999999999999988                           5699999999999999999999999999


Q ss_pred             cccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          464 KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       464 ~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      +..+.+|.+.|+++.||.||..||+||.|++|++|+.
T Consensus       612 v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  612 VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            9999999999999999999999999999999999973

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.3e-40  Score=285.26  Aligned_cols=268  Identities=31%  Similarity=0.580  Sum_probs=228.0

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~  186 (500)
                      ..+.|.|+++  |...+++|..|++|+|||..+-.++..+.||++.|.|+.|  +.+.+++||.|.+|++||+++|+++.
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhh
Confidence            4678999987  5667999999999999999999999999999999999999  55699999999999999999999875


Q ss_pred             ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe---EEEEecCccccEEEEEeCCCCeEEEEeCCCeE
Q 010816          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTI  263 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i  263 (500)
                       .+.+|...|..+.|+.       +.++++|.|.++.+||+....   +...+.||...|..+.|+.. +|++++.|.+|
T Consensus       272 -tlihHceaVLhlrf~n-------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTi  342 (499)
T KOG0281|consen  272 -TLIHHCEAVLHLRFSN-------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTI  342 (499)
T ss_pred             -HHhhhcceeEEEEEeC-------CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEecCCceE
Confidence             4678999999988753       589999999999999997653   34457799999999999854 89999999999


Q ss_pred             EEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEE
Q 010816          264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (500)
Q Consensus       264 ~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~  343 (500)
                      ++|+..++..++++.+|                                                               
T Consensus       343 kvW~~st~efvRtl~gH---------------------------------------------------------------  359 (499)
T KOG0281|consen  343 KVWSTSTCEFVRTLNGH---------------------------------------------------------------  359 (499)
T ss_pred             EEEeccceeeehhhhcc---------------------------------------------------------------
Confidence            99999887776655544                                                               


Q ss_pred             EcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY  423 (500)
Q Consensus       344 wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  423 (500)
                                      +..|.|+.+  .|+++++||.|.+|++||...|.++.+++||+.-|.+++|             
T Consensus       360 ----------------kRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF-------------  408 (499)
T KOG0281|consen  360 ----------------KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-------------  408 (499)
T ss_pred             ----------------cccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee-------------
Confidence                            444444443  5788999999999999999999999999999998888876             


Q ss_pred             eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc---------ccccccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816          424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK---------LKQDLPGHADEVFAVDWSPDGEKVASGGKDRV  494 (500)
Q Consensus       424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~  494 (500)
                                      |.+.+++|+.||+|++||+.++.         ++..+..|.++|+.+.|  |...+++++.|.+
T Consensus       409 ----------------d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddt  470 (499)
T KOG0281|consen  409 ----------------DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDT  470 (499)
T ss_pred             ----------------cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCe
Confidence                            66788999999999999987643         34556779999999999  4578999999999


Q ss_pred             EEEec
Q 010816          495 LKLWM  499 (500)
Q Consensus       495 v~iW~  499 (500)
                      |.||+
T Consensus       471 ILiWd  475 (499)
T KOG0281|consen  471 ILIWD  475 (499)
T ss_pred             EEEEE
Confidence            99997

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.3e-38  Score=261.15  Aligned_cols=266  Identities=26%  Similarity=0.429  Sum_probs=219.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe--EEEEecCcc
Q 010816          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHT  240 (500)
Q Consensus       163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~--~~~~~~~h~  240 (500)
                      -+|+|+|+|.+||+|...+|.+.+. +......|+.+...|     +. ++++++....||+||+++.+  .+.++.+|+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rT-iqh~dsqVNrLeiTp-----dk-~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~   83 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRT-IQHPDSQVNRLEITP-----DK-KDLAAAGNQHVRLYDLNSNNPNPVATFEGHT   83 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEE-EecCccceeeEEEcC-----Cc-chhhhccCCeeEEEEccCCCCCceeEEeccC
Confidence            4789999999999999999988653 444456677776554     33 44555566899999998765  588899999


Q ss_pred             ccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816          241 LAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (500)
Q Consensus       241 ~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (500)
                      ..|+++.|..+| .+++|+.||++||||++...+.+.++ +..+|+++.++|.                           
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn---------------------------  135 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN---------------------------  135 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC---------------------------
Confidence            999999999887 48999999999999999866555554 5588999988875                           


Q ss_pred             hhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc------
Q 010816          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK------  393 (500)
Q Consensus       320 ~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~------  393 (500)
                               ...|++|..+|.|++||+.........+..-...|.+++..|||.+++.+-.-|..++|++..+.      
T Consensus       136 ---------QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~  206 (311)
T KOG0315|consen  136 ---------QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE  206 (311)
T ss_pred             ---------cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce
Confidence                     34689999999999999876543333344445679999999999999999999999999987643      


Q ss_pred             eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc-cccccccCccc
Q 010816          394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHAD  472 (500)
Q Consensus       394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h~~  472 (500)
                      .+..++.|++-+.+.                           -+|||+++||++|.|.+|+||++... +....+.+|.+
T Consensus       207 P~~k~~ah~~~il~C---------------------------~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r  259 (311)
T KOG0315|consen  207 PVHKFQAHNGHILRC---------------------------LLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR  259 (311)
T ss_pred             EhhheecccceEEEE---------------------------EECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc
Confidence            345677777766655                           35999999999999999999999887 55567899999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          473 EVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       473 ~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      .|+.++||.||++|+||+.|+++|+|+
T Consensus       260 WvWdc~FS~dg~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  260 WVWDCAFSADGEYLVTASSDHTARLWD  286 (311)
T ss_pred             eEEeeeeccCccEEEecCCCCceeecc
Confidence            999999999999999999999999997

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-37  Score=258.16  Aligned_cols=283  Identities=28%  Similarity=0.507  Sum_probs=231.4

Q ss_pred             ccccCCcccEEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCc---eeEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 010816          102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT---PMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~~~~---~~~~~-~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~  176 (500)
                      +.++||++.|+.++|+|- |..|||++.|..||||+...+.   +...+ .+|+..|.+++|+|.|++|++||.|.++.|
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI   87 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence            457899999999999998 8999999999999999988532   22222 379999999999999999999999999999


Q ss_pred             EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEE
Q 010816          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY  255 (500)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~  255 (500)
                      |.-..+                                              ..+|+.++.||...|-|++|+.+| +|+
T Consensus        88 w~k~~~----------------------------------------------efecv~~lEGHEnEVK~Vaws~sG~~LA  121 (312)
T KOG0645|consen   88 WKKEDG----------------------------------------------EFECVATLEGHENEVKCVAWSASGNYLA  121 (312)
T ss_pred             eecCCC----------------------------------------------ceeEEeeeeccccceeEEEEcCCCCEEE
Confidence            953321                                              234566788999999999999876 689


Q ss_pred             EEeCCCeEEEEeCCCC---eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816          256 TGSQDCTIKVWETTQG---KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (500)
                      ++++|.+|-+|....+   .+...++.|.+.|..+.++|.                                    .+.|
T Consensus       122 TCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt------------------------------------~dlL  165 (312)
T KOG0645|consen  122 TCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT------------------------------------EDLL  165 (312)
T ss_pred             EeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC------------------------------------ccee
Confidence            9999999999998754   456778999999999999874                                    3579


Q ss_pred             EEeeCCCeEEEEcCCC--CCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEe
Q 010816          333 VSGSDDFTMFLWEPAV--SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (500)
Q Consensus       333 ~s~s~d~~v~~wd~~~--~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~  410 (500)
                      +++|.|++|++|+-..  .-.....+.+|...|.+++|+|.|..|++++.|++++||-..+.-    -..|..+++.+  
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v--  239 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDV--  239 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEee--
Confidence            9999999999997542  223467789999999999999999999999999999999865321    12366777776  


Q ss_pred             eeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc------cc-cccccCcccCEEEEEEcCC-
Q 010816          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ------KL-KQDLPGHADEVFAVDWSPD-  482 (500)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~------~~-~~~~~~h~~~V~~l~~s~d-  482 (500)
                                               +|.  ...||+++.|+.|+||.....      ++ .+.-..|...|+++.|+|. 
T Consensus       240 -------------------------~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~  292 (312)
T KOG0645|consen  240 -------------------------PWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV  292 (312)
T ss_pred             -------------------------eec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC
Confidence                                     454  568999999999999986542      11 1233458889999999995 


Q ss_pred             CCEEEEEeCCCcEEEec
Q 010816          483 GEKVASGGKDRVLKLWM  499 (500)
Q Consensus       483 g~~l~s~~~D~~v~iW~  499 (500)
                      ..+|++||.||.|++|.
T Consensus       293 ~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  293 SNRLASGGDDGIVNFWE  309 (312)
T ss_pred             CCceeecCCCceEEEEE
Confidence            67899999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.4e-38  Score=304.13  Aligned_cols=291  Identities=36%  Similarity=0.628  Sum_probs=250.8

Q ss_pred             cccCC-cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          103 TIAGH-TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       103 ~~~gh-~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      .+.+| ...|.++.|+|+|+++++++.|+.+++|+..+..  .+..+.+|...|.+++|+|+++++++++.|++|++||+
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence            34444 8899999999999999999999999999997766  66667899999999999999999999999999999999


Q ss_pred             CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~  258 (500)
                      .........+.+|...|++++|+|.     ++.+++|+.|++|+|||++++++...+.+|...|++++|++++ .|++++
T Consensus       233 ~~~~~~~~~l~gH~~~v~~~~f~p~-----g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s  307 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHSTYVTSVAFSPD-----GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS  307 (456)
T ss_pred             cCCCeEEEEecCCCCceEEEEecCC-----CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence            5443333467899999999999884     3689999999999999999999999999999999999999887 577889


Q ss_pred             CCCeEEEEeCCCCeeE--EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          259 QDCTIKVWETTQGKLI--RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                      .|+.|++||+.++...  ..+..+                                                        
T Consensus       308 ~d~~i~vwd~~~~~~~~~~~~~~~--------------------------------------------------------  331 (456)
T KOG0266|consen  308 YDGTIRVWDLETGSKLCLKLLSGA--------------------------------------------------------  331 (456)
T ss_pred             CCccEEEEECCCCceeeeecccCC--------------------------------------------------------
Confidence            9999999999887632  111100                                                        


Q ss_pred             CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF  416 (500)
Q Consensus       337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  416 (500)
                                          .... .++++.|+|++.+|++++.|+.+++||+..+.++..+.+|...++++..      
T Consensus       332 --------------------~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~------  384 (456)
T KOG0266|consen  332 --------------------ENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFS------  384 (456)
T ss_pred             --------------------CCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEec------
Confidence                                0112 5889999999999999999999999999999999999999876433311      


Q ss_pred             cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCc-ccCEEEEEEcCCCCEEEEEe--CCC
Q 010816          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH-ADEVFAVDWSPDGEKVASGG--KDR  493 (500)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~s~~--~D~  493 (500)
                                        ...++++.++++|+.|+.|++||+.++..+..+.+| ...+..++|+|..+.+++++  .|+
T Consensus       385 ------------------~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~  446 (456)
T KOG0266|consen  385 ------------------PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG  446 (456)
T ss_pred             ------------------ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCc
Confidence                              023688999999999999999999999999999999 88899999999999999998  799


Q ss_pred             cEEEec
Q 010816          494 VLKLWM  499 (500)
Q Consensus       494 ~v~iW~  499 (500)
                      .+++|.
T Consensus       447 ~~~~w~  452 (456)
T KOG0266|consen  447 LIRLWK  452 (456)
T ss_pred             eEEEec
Confidence            999996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.8e-40  Score=292.80  Aligned_cols=294  Identities=29%  Similarity=0.508  Sum_probs=247.8

Q ss_pred             ecccccccccCCcccEEEEEEcC-CCCeEEEEeCCCcEEEEeCCC-CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 010816           96 PVNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (500)
Q Consensus        96 ~~~~~~~~~~gh~~~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~  173 (500)
                      .+.+...++.||+..|.++.|.| .+.+|++++.|+.|+||++-. +.++.++.+|..+|.+++|+++|..++|+|.|+.
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence            34456678899999999999999 899999999999999999865 8888999999999999999999999999999999


Q ss_pred             EEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-
Q 010816          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-  252 (500)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-  252 (500)
                      |++||.++|++....   |                                              ....++|+.|.|++ 
T Consensus       282 lKlwDtETG~~~~~f---~----------------------------------------------~~~~~~cvkf~pd~~  312 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRF---H----------------------------------------------LDKVPTCVKFHPDNQ  312 (503)
T ss_pred             eeeeccccceEEEEE---e----------------------------------------------cCCCceeeecCCCCC
Confidence            999999988753210   0                                              01234667777765 


Q ss_pred             -eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816          253 -VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (500)
Q Consensus       253 -~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (500)
                       .+++|+.|+.|+.||.++++.++++..|-..|..+.+-+.                                    +.+
T Consensus       313 n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~------------------------------------g~r  356 (503)
T KOG0282|consen  313 NIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE------------------------------------GRR  356 (503)
T ss_pred             cEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC------------------------------------Cce
Confidence             6889999999999999999999988888888888877654                                    457


Q ss_pred             EEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---ceEEEEeCCcccEEEE
Q 010816          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---KFVAVFRGHVGPVYQI  408 (500)
Q Consensus       332 ~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~---~~~~~~~~h~~~v~~~  408 (500)
                      +++.++|+++++|+.+..-........+.-...++..+|+++++++-+.|+.|.++.....   .....|+||..+-+.+
T Consensus       357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~  436 (503)
T KOG0282|consen  357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC  436 (503)
T ss_pred             EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence            9999999999999987655444444444455778999999999999999999999986542   2245678888776665


Q ss_pred             EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCC-CEEE
Q 010816          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG-EKVA  487 (500)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg-~~l~  487 (500)
                      +.                         .|||||++|++|+.||.+.+||.++.+++..++.|...+..+.|+|.. ..+|
T Consensus       437 ~v-------------------------~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skva  491 (503)
T KOG0282|consen  437 QV-------------------------DFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVA  491 (503)
T ss_pred             eE-------------------------EEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeE
Confidence            43                         689999999999999999999999999999999999999999999974 5799


Q ss_pred             EEeCCCcEEEec
Q 010816          488 SGGKDRVLKLWM  499 (500)
Q Consensus       488 s~~~D~~v~iW~  499 (500)
                      |||.||.|++|+
T Consensus       492 t~~w~G~Ikiwd  503 (503)
T KOG0282|consen  492 TCGWDGLIKIWD  503 (503)
T ss_pred             ecccCceeEecC
Confidence            999999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.9e-38  Score=278.53  Aligned_cols=288  Identities=28%  Similarity=0.518  Sum_probs=249.1

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~  187 (500)
                      ...|++++|+.+|..||+|+.||.++||+... ..+..+..|.++|.++.|+.+|.+|++++.|+++.+||..+|.... 
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q-  312 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ-  312 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE-
Confidence            36799999999999999999999999999754 4455677899999999999999999999999999999998886543 


Q ss_pred             cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEE
Q 010816          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW  266 (500)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lw  266 (500)
                      .+.-|..+-..+.|..      ...|++++.|+.|+++.+....++.++.||...|.++.|++.+ .|++++.|++++||
T Consensus       313 ~f~~~s~~~lDVdW~~------~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiW  386 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQS------NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIW  386 (524)
T ss_pred             eeeeccCCccceEEec------CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEee
Confidence            4556666656778864      2479999999999999999999999999999999999999877 57889999999999


Q ss_pred             eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (500)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~  346 (500)
                      ...++.....+..|...|..+.++|........                           ..+..+++++.|++|++||+
T Consensus       387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~---------------------------~~~~~l~sas~dstV~lwdv  439 (524)
T KOG0273|consen  387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNP---------------------------NMNLMLASASFDSTVKLWDV  439 (524)
T ss_pred             ecCCCcchhhhhhhccceeeEeecCCCCccCCC---------------------------cCCceEEEeecCCeEEEEEc
Confidence            999888999999999999999999875432211                           12457899999999999997


Q ss_pred             CCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (500)
Q Consensus       347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  426 (500)
                      ... .+...+..|+.+|.+|+|+|+|+++|+|+.||.|.+|+.+++++++.+.+..+ |..+                  
T Consensus       440 ~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~-Ifel------------------  499 (524)
T KOG0273|consen  440 ESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG-IFEL------------------  499 (524)
T ss_pred             cCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe-EEEE------------------
Confidence            654 45677889999999999999999999999999999999999999988876543 5444                  


Q ss_pred             eccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       427 ~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                               .|+.+|..|..+-.|+.+.+.|++
T Consensus       500 ---------~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  500 ---------CWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ---------EEcCCCCEEEEEecCCCceEEEec
Confidence                     678899999999999999999875

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-38  Score=278.66  Aligned_cols=289  Identities=27%  Similarity=0.421  Sum_probs=233.2

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce---eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w  177 (500)
                      .+.+..|++.|+-+.||++|++|||++.|.+..||++.....   .+++.+|..+|.-+.||||.++|++|+.|..+.+|
T Consensus       217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW  296 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence            356789999999999999999999999999999998764433   56788999999999999999999999999999999


Q ss_pred             eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc-cccEEEEEeCCCC-eEE
Q 010816          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG-VIY  255 (500)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~-~l~  255 (500)
                      |+.+|........++...+.+.+|.|     ++.+|++|+.|+++..||+.... .....+- ...|.+++..+|| .++
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~p-----Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl  370 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCP-----DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVL  370 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEcc-----CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEE
Confidence            99999876555556668889999998     45689999999999999986432 2222222 2346777777776 466


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  335 (500)
                      +.+.|..|++++..+....                                                             
T Consensus       371 ~v~~d~~i~l~~~e~~~dr-------------------------------------------------------------  389 (519)
T KOG0293|consen  371 LVTVDKKIRLYNREARVDR-------------------------------------------------------------  389 (519)
T ss_pred             EEecccceeeechhhhhhh-------------------------------------------------------------
Confidence            6667777777765431100                                                             


Q ss_pred             eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC  415 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  415 (500)
                                         .+..-...|+++++|.||+++.+.-.+..+.+||++..+++..+.||+..-+-++.    |
T Consensus       390 -------------------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS----C  446 (519)
T KOG0293|consen  390 -------------------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS----C  446 (519)
T ss_pred             -------------------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe----c
Confidence                               01112346899999999999999999999999999999999999999877555532    1


Q ss_pred             ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCC-CEEEEEeCCCc
Q 010816          416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG-EKVASGGKDRV  494 (500)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg-~~l~s~~~D~~  494 (500)
                      +-                    -.+..++|+||.|+.|+||+..+++++..++||...|++|+|+|.. ..+||||+||+
T Consensus       447 Fg--------------------g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt  506 (519)
T KOG0293|consen  447 FG--------------------GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT  506 (519)
T ss_pred             cC--------------------CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence            10                    1355799999999999999999999999999999999999999975 45799999999


Q ss_pred             EEEec
Q 010816          495 LKLWM  499 (500)
Q Consensus       495 v~iW~  499 (500)
                      ||||-
T Consensus       507 IRIWg  511 (519)
T KOG0293|consen  507 IRIWG  511 (519)
T ss_pred             EEEec
Confidence            99994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-37  Score=260.03  Aligned_cols=259  Identities=27%  Similarity=0.461  Sum_probs=211.1

Q ss_pred             cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      ...+.+.||.-.|..+..++||++.++++.|+++++||+.++++...+.||...|.+++|++|...++||+.|.+|++||
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn  133 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN  133 (315)
T ss_pred             ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEE
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTG  257 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~  257 (500)
                      ...+-.....-.++..+|+++.|+|..   ....++++|+|++||+||+++.+....+.||+..++.++++|||. .++|
T Consensus       134 t~g~ck~t~~~~~~~~WVscvrfsP~~---~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG  210 (315)
T KOG0279|consen  134 TLGVCKYTIHEDSHREWVSCVRFSPNE---SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG  210 (315)
T ss_pred             ecccEEEEEecCCCcCcEEEEEEcCCC---CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence            865432222223348999999999854   335899999999999999999999999999999999999999996 5668


Q ss_pred             eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      +.||.+.+||+..++.+..+                                                            
T Consensus       211 gkdg~~~LwdL~~~k~lysl------------------------------------------------------------  230 (315)
T KOG0279|consen  211 GKDGEAMLWDLNEGKNLYSL------------------------------------------------------------  230 (315)
T ss_pred             CCCceEEEEEccCCceeEec------------------------------------------------------------
Confidence            99999999999877654322                                                            


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                                          +|...|++++|+|+...|+.+. +..|+|||+.++.++..++-....- +.+....    
T Consensus       231 --------------------~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~----  284 (315)
T KOG0279|consen  231 --------------------EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP-SSKAGDP----  284 (315)
T ss_pred             --------------------cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc-ccccCCc----
Confidence                                3455689999999988887664 4569999999998877665321110 0000000    


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                                   .-..++|+++|+.|++|-.|+.|++|.+.
T Consensus       285 -------------~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  285 -------------ICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             -------------EEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence                         11235899999999999999999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.7e-36  Score=279.40  Aligned_cols=286  Identities=43%  Similarity=0.747  Sum_probs=247.1

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      .++.+|.++|.+++|+|++++|++++.||.+++|++.++.....+..|...+.++.|+|++++|++++.|+.|++||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            45779999999999999999999999999999999998888888889999999999999999999999999999999987


Q ss_pred             CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCC
Q 010816          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD  260 (500)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~d  260 (500)
                      ++... .+..|...+.++.|.+.     ...+++++.|+.+++||+++++....+..|...+.++.|++++. +++++.|
T Consensus        83 ~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  156 (289)
T cd00200          83 GECVR-TLTGHTSYVSSVAFSPD-----GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD  156 (289)
T ss_pred             ccceE-EEeccCCcEEEEEEcCC-----CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence            65433 45678888999998873     34667777799999999999888888889999999999999765 4455559


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      +.|++||+++++.+..                                                                
T Consensus       157 ~~i~i~d~~~~~~~~~----------------------------------------------------------------  172 (289)
T cd00200         157 GTIKLWDLRTGKCVAT----------------------------------------------------------------  172 (289)
T ss_pred             CcEEEEEcccccccee----------------------------------------------------------------
Confidence            9999999865432221                                                                


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCC
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS  420 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  420 (500)
                                     +..|...+.+++|+|+++.+++++.|+.|++||..+++.+..+..|..++.++            
T Consensus       173 ---------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~------------  225 (289)
T cd00200         173 ---------------LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV------------  225 (289)
T ss_pred             ---------------EecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE------------
Confidence                           12344568899999999999999999999999999999888888888777766            


Q ss_pred             CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       421 ~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                                     .|+|++.++++++.|+.|++||+.+++....+.+|...|.+++|+|+++.|++++.|+.|++|+
T Consensus       226 ---------------~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         226 ---------------AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ---------------EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence                           5688888999998899999999999888888889999999999999999999999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-37  Score=250.46  Aligned_cols=284  Identities=24%  Similarity=0.387  Sum_probs=243.1

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      ..+.+|.++|.++.|+-||++.+|++.|.+|++|+...+..+.+..+|...|..++.+.|...+++|+.|..+.+||+++
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC--eEEEEecCccccEEEEEeCCCCeEEEEeC
Q 010816          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (500)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~l~t~~~  259 (500)
                      |+..+ .+.+|.+.|+.+.|+.     ....+++||.|.++++||.+..  ++++.+......|.++..+. ..|++|+.
T Consensus        91 Gkv~R-r~rgH~aqVNtV~fNe-----esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS~  163 (307)
T KOG0316|consen   91 GKVDR-RFRGHLAQVNTVRFNE-----ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGSV  163 (307)
T ss_pred             Ceeee-ecccccceeeEEEecC-----cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeecc
Confidence            98764 5899999999999864     4568999999999999999764  56777777777888887763 46888999


Q ss_pred             CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (500)
Q Consensus       260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~  339 (500)
                      ||++|.||++.|+....                                                               
T Consensus       164 DGtvRtydiR~G~l~sD---------------------------------------------------------------  180 (307)
T KOG0316|consen  164 DGTVRTYDIRKGTLSSD---------------------------------------------------------------  180 (307)
T ss_pred             CCcEEEEEeecceeehh---------------------------------------------------------------
Confidence            99999999887653211                                                               


Q ss_pred             eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCC
Q 010816          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP  419 (500)
Q Consensus       340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  419 (500)
                                      .  -..+|+|++|++||+....++.|+++++.|-++|+++..++||...-+.+..         
T Consensus       181 ----------------y--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc---------  233 (307)
T KOG0316|consen  181 ----------------Y--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC---------  233 (307)
T ss_pred             ----------------h--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee---------
Confidence                            0  1235999999999999999999999999999999999999999988777643         


Q ss_pred             CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccC-EEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE-VFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                                      .++.....+++||.||.|++||+.....+..++.|... |.+++++|.-..|.++..- .+..|
T Consensus       234 ----------------~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~  296 (307)
T KOG0316|consen  234 ----------------CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW  296 (307)
T ss_pred             ----------------eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence                            23556678999999999999999998888888877765 7899999998878777653 35556


Q ss_pred             c
Q 010816          499 M  499 (500)
Q Consensus       499 ~  499 (500)
                      .
T Consensus       297 ~  297 (307)
T KOG0316|consen  297 Y  297 (307)
T ss_pred             e
Confidence            4

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-36  Score=284.47  Aligned_cols=352  Identities=26%  Similarity=0.418  Sum_probs=280.2

Q ss_pred             EEEEeecceEeEEecc--cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcC
Q 010816           83 SIVYQPQAVFRIRPVN--RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA  160 (500)
Q Consensus        83 ~~~~~~~~~~~~~~~~--~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~  160 (500)
                      .+.|... ..+++...  ...-++.||..+|+++.|+..|.+||+||.|+.|.+||+-...-++.+.||...|+..-|..
T Consensus        81 AVGYaDG-sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~  159 (888)
T KOG0306|consen   81 AVGYADG-SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN  159 (888)
T ss_pred             EEEecCc-eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC
Confidence            4555433 34555443  44567889999999999999999999999999999999999888999999999999999988


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCcccc-----------------------------------------------------
Q 010816          161 DGKHLVSGSKAGELQCWDPQTGKPSGN-----------------------------------------------------  187 (500)
Q Consensus       161 ~~~~l~s~~~d~~i~~wd~~~~~~~~~-----------------------------------------------------  187 (500)
                      +.+.|++.|.|+.|++||+++..+...                                                     
T Consensus       160 ~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~  239 (888)
T KOG0306|consen  160 GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF  239 (888)
T ss_pred             CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence            788999999999999999754221100                                                     


Q ss_pred             ---------------------------------------------------cccC------------------------c
Q 010816          188 ---------------------------------------------------PLSG------------------------H  192 (500)
Q Consensus       188 ---------------------------------------------------~~~~------------------------~  192 (500)
                                                                         ...+                        -
T Consensus       240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~  319 (888)
T KOG0306|consen  240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT  319 (888)
T ss_pred             eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence                                                               0000                        0


Q ss_pred             ccceEEEEeeee--------------------ecC----C-----------------------CCceEEEEeCCCcEEEE
Q 010816          193 KKWITGISWEPV--------------------HLN----A-----------------------PCRRFVSASKDGDARIW  225 (500)
Q Consensus       193 ~~~v~~~~~~~~--------------------~~~----~-----------------------~~~~~~s~s~dg~v~iw  225 (500)
                      ...+.++.|-|.                    ...    +                       ....++..+..+++++|
T Consensus       320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiW  399 (888)
T KOG0306|consen  320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIW  399 (888)
T ss_pred             hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEE
Confidence            011122222211                    000    0                       01123344556899999


Q ss_pred             ECCCCeEEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCC
Q 010816          226 DVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG  304 (500)
Q Consensus       226 d~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  304 (500)
                      +..+.+|+.++...  .+.+..|.|. .++++|...|.+.+||+.....+.+++.|...+.+++..|+            
T Consensus       400 n~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD------------  465 (888)
T KOG0306|consen  400 NRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPD------------  465 (888)
T ss_pred             EccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCC------------
Confidence            99999999988543  7788888764 57899999999999999999999889999999999998876            


Q ss_pred             CCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC----Cce-------eeecccCcEEEEEECCCCC
Q 010816          305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ----PKT-------RMTGHQQLVNHVYFSPDGQ  373 (500)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~----~~~-------~~~~h~~~v~~l~~sp~g~  373 (500)
                                              +..+++||.|.+|++||......    ...       +...-++.|.|+++||||+
T Consensus       466 ------------------------~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  466 ------------------------NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK  521 (888)
T ss_pred             ------------------------CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence                                    34689999999999998532111    111       1223457799999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcE
Q 010816          374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (500)
Q Consensus       374 ~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v  453 (500)
                      +||.+-.|.+|++|-+.+.+..-.+-||.-||.++.                           .|||+.++++||.|.+|
T Consensus       522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD---------------------------IS~DSklivTgSADKnV  574 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD---------------------------ISPDSKLIVTGSADKNV  574 (888)
T ss_pred             EEEEEeccCeEEEEEecceeeeeeecccccceeEEe---------------------------ccCCcCeEEeccCCCce
Confidence            999999999999999999999999999999999884                           48999999999999999


Q ss_pred             EEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          454 KVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       454 ~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      ++|-+.-|.+.+.+-+|.+.|.+|.|-|+...+.++|.|+.|+-|+|
T Consensus       575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg  621 (888)
T KOG0306|consen  575 KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG  621 (888)
T ss_pred             EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeech
Confidence            99999999999999999999999999999999999999999999975

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8.5e-38  Score=295.72  Aligned_cols=278  Identities=29%  Similarity=0.516  Sum_probs=234.4

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      .++.-....+.|..|++|+++||.|-.|..|++|.+...+ +..+++ ...         ...+=+.+.|-.+..-|..+
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~-~~~---------l~~~d~~sad~~~~~~D~~~  440 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKD-ASD---------LSNIDTESADVDVDMLDDDS  440 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccc-hhh---------hccccccccchhhhhccccC
Confidence            3444445679999999999999999999999999987542 222221 111         11222344444455666554


Q ss_pred             CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCC
Q 010816          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD  260 (500)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~d  260 (500)
                      +... ..+.||.++|.+.+|.|.     .+.++++|.|+++|+|.+.+..++...+||..+|.++.|+|.| +++|++.|
T Consensus       441 ~~~~-~~L~GH~GPVyg~sFsPd-----~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D  514 (707)
T KOG0263|consen  441 SGTS-RTLYGHSGPVYGCSFSPD-----RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHD  514 (707)
T ss_pred             Ccee-EEeecCCCceeeeeeccc-----ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCC
Confidence            4332 348899999999999884     4689999999999999999999999999999999999999988 48899999


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      ++-++|.......++.+.+|-..|.|+.++|+                                    ..++++||.|.+
T Consensus       515 ~tArLWs~d~~~PlRifaghlsDV~cv~FHPN------------------------------------s~Y~aTGSsD~t  558 (707)
T KOG0263|consen  515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN------------------------------------SNYVATGSSDRT  558 (707)
T ss_pred             ceeeeeecccCCchhhhcccccccceEEECCc------------------------------------ccccccCCCCce
Confidence            99999999988999999999999999999986                                    357899999999


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCC
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS  420 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  420 (500)
                      +++||...+ .....+.||.++|.+|+|||+|++||+|+.||.|.+||+.+|+.+..+++|++.|+++            
T Consensus       559 VRlWDv~~G-~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sl------------  625 (707)
T KOG0263|consen  559 VRLWDVSTG-NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSL------------  625 (707)
T ss_pred             EEEEEcCCC-cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEE------------
Confidence            999998754 3467789999999999999999999999999999999999999999999999999988            


Q ss_pred             CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816          421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       421 ~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                                     .||.+|..||+|+.|++|++||+..
T Consensus       626 ---------------sFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  626 ---------------SFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ---------------EEecCCCEEEecCCCCeEEEEEchh
Confidence                           4589999999999999999999865

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.4e-35  Score=275.78  Aligned_cols=322  Identities=22%  Similarity=0.434  Sum_probs=264.1

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCCccc
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-GELQCWDPQTGKPSG  186 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-~~i~~wd~~~~~~~~  186 (500)
                      ...|++.+||+..+.||+|-..|...+|++.....++.+.--..+|..++|+..|+.||.|+.. |.+-+|++++...+.
T Consensus       265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl  344 (893)
T KOG0291|consen  265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL  344 (893)
T ss_pred             ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee
Confidence            4789999999999999999999999999999999999988888899999999999999987764 899999998765443


Q ss_pred             ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEE
Q 010816          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV  265 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~l  265 (500)
                       ..++|...+++++++|     ++.++++|+.||.|||||...+-|..+|..|+..|+.+.|...+ .+++++-||+||.
T Consensus       345 -KQQgH~~~i~~l~YSp-----Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA  418 (893)
T KOG0291|consen  345 -KQQGHSDRITSLAYSP-----DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA  418 (893)
T ss_pred             -eccccccceeeEEECC-----CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence             3578999999999887     66799999999999999999999999999999999999998766 5889999999999


Q ss_pred             EeCCCCeeEEEeecCCc-eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC-CeEEE
Q 010816          266 WETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-FTMFL  343 (500)
Q Consensus       266 wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d-~~v~~  343 (500)
                      ||+...+..+++..... ...+++..|.                                    ++.+.+|+.| ..|++
T Consensus       419 wDlkRYrNfRTft~P~p~QfscvavD~s------------------------------------GelV~AG~~d~F~Ifv  462 (893)
T KOG0291|consen  419 WDLKRYRNFRTFTSPEPIQFSCVAVDPS------------------------------------GELVCAGAQDSFEIFV  462 (893)
T ss_pred             eeecccceeeeecCCCceeeeEEEEcCC------------------------------------CCEEEeeccceEEEEE
Confidence            99999998888865432 3444555443                                    3456666665 46999


Q ss_pred             EcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCc
Q 010816          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNF  422 (500)
Q Consensus       344 wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  422 (500)
                      |++..+ +....+.||+++|.+++|+|+|..||+||+|.+||+||+-.. ..+.++. +...+                 
T Consensus       463 WS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdv-----------------  523 (893)
T KOG0291|consen  463 WSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDV-----------------  523 (893)
T ss_pred             EEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccce-----------------
Confidence            998765 345678999999999999999999999999999999997543 2222222 11222                 


Q ss_pred             eeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC--------------------cccCEEEEEEcCC
Q 010816          423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG--------------------HADEVFAVDWSPD  482 (500)
Q Consensus       423 ~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--------------------h~~~V~~l~~s~d  482 (500)
                                ..++|+|+|+.||++..||.|.+||.+....+..+.|                    -....+.+++|+|
T Consensus       524 ----------l~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD  593 (893)
T KOG0291|consen  524 ----------LAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSAD  593 (893)
T ss_pred             ----------eEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCC
Confidence                      3347899999999999999999999876443322211                    1234688999999


Q ss_pred             CCEEEEEeCCCcEEEecC
Q 010816          483 GEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       483 g~~l~s~~~D~~v~iW~~  500 (500)
                      |+.|.+||..+.|.|++.
T Consensus       594 G~~IlAgG~sn~iCiY~v  611 (893)
T KOG0291|consen  594 GKCILAGGESNSICIYDV  611 (893)
T ss_pred             CCEEEecCCcccEEEEEC
Confidence            999999999999999863

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4e-35  Score=306.74  Aligned_cols=303  Identities=18%  Similarity=0.320  Sum_probs=242.6

Q ss_pred             CCcEEEEeCCCCceeEE-----ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC----cccc--cccCcccceE
Q 010816          129 DTTVRLWDLNTQTPMFK-----CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK----PSGN--PLSGHKKWIT  197 (500)
Q Consensus       129 d~~i~iwd~~~~~~~~~-----~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~----~~~~--~~~~~~~~v~  197 (500)
                      +|.+++|+..+......     +..|.+.|.+++|+|+|++||+|+.|++|++||..+..    ....  ....+...+.
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  536 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS  536 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence            67788888765443322     34589999999999999999999999999999975421    1000  0112345678


Q ss_pred             EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-C-CeEEEEeCCCeEEEEeCCCCeeEE
Q 010816          198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-D-GVIYTGSQDCTIKVWETTQGKLIR  275 (500)
Q Consensus       198 ~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~-~~l~t~~~dg~i~lwd~~~~~~~~  275 (500)
                      ++.|.|..    ..++++++.||+|++||+.+++.+..+.+|...|.+++|++ + ..|++|+.|++|++||++++..+.
T Consensus       537 ~l~~~~~~----~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        537 GICWNSYI----KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG  612 (793)
T ss_pred             eEEeccCC----CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence            88887642    35799999999999999999999999999999999999986 4 378999999999999999988887


Q ss_pred             EeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee
Q 010816          276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR  355 (500)
Q Consensus       276 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~  355 (500)
                      .+..+ ..+.++.+.+.                                   .+..+++|+.|+.|++||++....+...
T Consensus       613 ~~~~~-~~v~~v~~~~~-----------------------------------~g~~latgs~dg~I~iwD~~~~~~~~~~  656 (793)
T PLN00181        613 TIKTK-ANICCVQFPSE-----------------------------------SGRSLAFGSADHKVYYYDLRNPKLPLCT  656 (793)
T ss_pred             EEecC-CCeEEEEEeCC-----------------------------------CCCEEEEEeCCCeEEEEECCCCCccceE
Confidence            77654 45666665432                                   2457999999999999998766555667


Q ss_pred             eecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC------ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecc
Q 010816          356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG------KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS  429 (500)
Q Consensus       356 ~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  429 (500)
                      +.+|...|.++.|. ++.+|++++.|++|++||+..+      ..+..+.+|...+..+                     
T Consensus       657 ~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v---------------------  714 (793)
T PLN00181        657 MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV---------------------  714 (793)
T ss_pred             ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE---------------------
Confidence            78999999999997 7889999999999999999743      5677788888776665                     


Q ss_pred             ccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc-------------cccCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816          430 CCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ-------------DLPGHADEVFAVDWSPDGEKVASGGKDRVLK  496 (500)
Q Consensus       430 ~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~-------------~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~  496 (500)
                            +|+|++.+|++|+.|+.|++|+........             ....|...|.+++|+|++..|++|+.||.|+
T Consensus       715 ------~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~  788 (793)
T PLN00181        715 ------GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIK  788 (793)
T ss_pred             ------EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence                  568999999999999999999976543211             1123556799999999999999999999999


Q ss_pred             Eec
Q 010816          497 LWM  499 (500)
Q Consensus       497 iW~  499 (500)
                      ||+
T Consensus       789 i~~  791 (793)
T PLN00181        789 ILE  791 (793)
T ss_pred             EEe
Confidence            997

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.5e-36  Score=251.93  Aligned_cols=244  Identities=27%  Similarity=0.459  Sum_probs=214.6

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC------ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ------TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~------~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w  177 (500)
                      ++--+..|..++|+|.|+++|.|+.|+...||++.+.      +....+.+|++.+.|+.|-+| .+|+++|.|.++.+|
T Consensus        93 ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalW  171 (343)
T KOG0286|consen   93 IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALW  171 (343)
T ss_pred             EecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEE
Confidence            3445778999999999999999999999999999854      233468899999999999875 589999999999999


Q ss_pred             eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEE
Q 010816          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYT  256 (500)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t  256 (500)
                      |+++|+... .+.+|...|.+++..|.    +.+.|++|+-|+..++||++.+.|++.|.+|...|.++.|.|+|. +++
T Consensus       172 Die~g~~~~-~f~GH~gDV~slsl~p~----~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat  246 (343)
T KOG0286|consen  172 DIETGQQTQ-VFHGHTGDVMSLSLSPS----DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT  246 (343)
T ss_pred             EcccceEEE-EecCCcccEEEEecCCC----CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence            999998654 57899999999998874    456899999999999999999999999999999999999999985 899


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                      |+.|++.|+||++..+.+..+...                                                        
T Consensus       247 GSDD~tcRlyDlRaD~~~a~ys~~--------------------------------------------------------  270 (343)
T KOG0286|consen  247 GSDDATCRLYDLRADQELAVYSHD--------------------------------------------------------  270 (343)
T ss_pred             cCCCceeEEEeecCCcEEeeeccC--------------------------------------------------------
Confidence            999999999999987655433200                                                        


Q ss_pred             CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF  416 (500)
Q Consensus       337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  416 (500)
                                           .-...|++++||..|++|.+|..|.++.+||.-.++.+..+.||++.|.++.       
T Consensus       271 ---------------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~-------  322 (343)
T KOG0286|consen  271 ---------------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLG-------  322 (343)
T ss_pred             ---------------------cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEE-------
Confidence                                 0113589999999999999999999999999999999999999999999884       


Q ss_pred             cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD  457 (500)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd  457 (500)
                                          .+|||.-+++||+|.++|||.
T Consensus       323 --------------------~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  323 --------------------VSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             --------------------ECCCCcEEEecchhHheeecC
Confidence                                489999999999999999994

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-35  Score=282.99  Aligned_cols=306  Identities=24%  Similarity=0.418  Sum_probs=252.6

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~  186 (500)
                      -+..|..++|||...++.++-..|.|++||..=+..+..+..|.++|..+.|+|++.+++||+.|-+|++|+..+.++..
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf   87 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF   87 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh
Confidence            46678999999999999999999999999999888888999999999999999999999999999999999999888765


Q ss_pred             ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCCeEEE
Q 010816          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKV  265 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~l  265 (500)
                       .+.||-+.|..+.|++..+     .++++|.|.+||||+..+++|+.++.||+..|.|..|.| +..++++|-|.+||+
T Consensus        88 -tL~GHlDYVRt~~FHheyP-----WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   88 -TLLGHLDYVRTVFFHHEYP-----WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV  161 (1202)
T ss_pred             -hhccccceeEEeeccCCCc-----eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence             5789999999999987553     799999999999999999999999999999999999998 668999999999999


Q ss_pred             EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (500)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd  345 (500)
                      ||+..-+..     +..+. +  +.                    +           .+.+...+.-+-|+.|-.     
T Consensus       162 WDisGLRkk-----~~~pg-~--~e--------------------~-----------~~~~~~~~~dLfg~~DaV-----  197 (1202)
T KOG0292|consen  162 WDISGLRKK-----NKAPG-S--LE--------------------D-----------QMRGQQGNSDLFGQTDAV-----  197 (1202)
T ss_pred             Eeecchhcc-----CCCCC-C--ch--------------------h-----------hhhccccchhhcCCcCee-----
Confidence            997532211     00000 0  00                    0           000000000011222322     


Q ss_pred             CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce--EEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFY  423 (500)
Q Consensus       346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  423 (500)
                            .+..+.||...|+.++|+|.-.+|++|+.|+.|++|....-+.  +.+++||.+.|.++-              
T Consensus       198 ------VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvl--------------  257 (1202)
T KOG0292|consen  198 ------VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVL--------------  257 (1202)
T ss_pred             ------eeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEE--------------
Confidence                  2356789999999999999999999999999999999876543  678899999998874              


Q ss_pred             eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 010816          424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL  495 (500)
Q Consensus       424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v  495 (500)
                                   |+|...+++|.|.|++|++||+...+.+++++-..++-|.++-+|..+.++.|.+.|.+
T Consensus       258 -------------fhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~  316 (1202)
T KOG0292|consen  258 -------------FHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMI  316 (1202)
T ss_pred             -------------ecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceE
Confidence                         48999999999999999999999999999887777899999999999877776666643

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.6e-34  Score=267.49  Aligned_cols=333  Identities=25%  Similarity=0.371  Sum_probs=245.4

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~  186 (500)
                      -...|+|+.-+|+..+||.|-.||.|+||+..++..+.++.||...|+++.|...|..|+|||.|+.|.+||+-...- .
T Consensus        64 ~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G-l  142 (888)
T KOG0306|consen   64 KKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG-L  142 (888)
T ss_pred             ccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee-e
Confidence            346899999999999999999999999999999989999999999999999999999999999999999999864322 2


Q ss_pred             ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-----------------------------
Q 010816          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-----------------------------  237 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-----------------------------  237 (500)
                      ..+.||++.++..-|..     ....+++.|.|+.+++||+.+..|..+.-                             
T Consensus       143 ~rL~GHkd~iT~~~F~~-----~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~  217 (888)
T KOG0306|consen  143 FRLRGHKDSITQALFLN-----GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWE  217 (888)
T ss_pred             EEeecchHHHhHHhccC-----CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEE
Confidence            35778887776655432     22345555666666666655444433322                             


Q ss_pred             --------------------------------------------------------------------------------
Q 010816          238 --------------------------------------------------------------------------------  237 (500)
Q Consensus       238 --------------------------------------------------------------------------------  237 (500)
                                                                                                      
T Consensus       218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~  297 (888)
T KOG0306|consen  218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE  297 (888)
T ss_pred             eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------------CccccEE
Q 010816          238 -------------------------------------------------------------------------GHTLAVT  244 (500)
Q Consensus       238 -------------------------------------------------------------------------~h~~~v~  244 (500)
                                                                                               ||...|.
T Consensus       298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR  377 (888)
T KOG0306|consen  298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR  377 (888)
T ss_pred             ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhee
Confidence                                                                                     3444455


Q ss_pred             EEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816          245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (500)
Q Consensus       245 ~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (500)
                      +++++.+..++..+..+++++|+..+.++++++...  .+.+..+-|                                 
T Consensus       378 sl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvp---------------------------------  422 (888)
T KOG0306|consen  378 SLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVP---------------------------------  422 (888)
T ss_pred             EEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecC---------------------------------
Confidence            555555555444455556666666666666655432  333333322                                 


Q ss_pred             cCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc
Q 010816          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP  404 (500)
Q Consensus       325 ~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~  404 (500)
                         ....++.|...|.+.++|+.... ......+|.+.+++++.+||+..+++||.|.+|++||..-   +....|....
T Consensus       423 ---gd~~Iv~G~k~Gel~vfdlaS~~-l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l---~~~~~gt~~k  495 (888)
T KOG0306|consen  423 ---GDRYIVLGTKNGELQVFDLASAS-LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL---VVSVPGTQKK  495 (888)
T ss_pred             ---CCceEEEeccCCceEEEEeehhh-hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEE---EeccCcccce
Confidence               24578999999999999986543 3445569999999999999999999999999999998631   1111122222


Q ss_pred             EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCC
Q 010816          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE  484 (500)
Q Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~  484 (500)
                      +.++.-            .........+..+++||||++||.+=.|++|+||-+.+.+..-.+=||.-+|.+++.|||++
T Consensus       496 ~lsl~~------------~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSk  563 (888)
T KOG0306|consen  496 VLSLKH------------TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK  563 (888)
T ss_pred             eeeecc------------ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcC
Confidence            222111            11223344455668899999999999999999999999888888889999999999999999


Q ss_pred             EEEEEeCCCcEEEec
Q 010816          485 KVASGGKDRVLKLWM  499 (500)
Q Consensus       485 ~l~s~~~D~~v~iW~  499 (500)
                      .++|||+|+.|++|-
T Consensus       564 livTgSADKnVKiWG  578 (888)
T KOG0306|consen  564 LIVTGSADKNVKIWG  578 (888)
T ss_pred             eEEeccCCCceEEec
Confidence            999999999999994

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-34  Score=266.64  Aligned_cols=284  Identities=23%  Similarity=0.379  Sum_probs=238.2

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~  182 (500)
                      .+..|++.|.++.|||...+++++-..|.|.|||.+++..+..+.--+-+|.+..|-+--+.+++|+.|..|++|+    
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn----   83 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN----   83 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEe----
Confidence            4456899999999999999999999999999999999888777766666777766655545555555555555554    


Q ss_pred             CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC-CeEEEEeCCC
Q 010816          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDC  261 (500)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg  261 (500)
                                                                  ..+...+..|.+|...|+|++.+|. .++++++.|-
T Consensus        84 --------------------------------------------ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm  119 (794)
T KOG0276|consen   84 --------------------------------------------YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDM  119 (794)
T ss_pred             --------------------------------------------cccceeeEEeeccccceeeeeecCCCCeEEecCCcc
Confidence                                                        4455555667788888999888874 4789999999


Q ss_pred             eEEEEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          262 TIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       262 ~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      +|++||.... .+.+++.+|.+.|..+++.|..                                   ++.++++|-|++
T Consensus       120 ~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD-----------------------------------~ntFaS~sLDrT  164 (794)
T KOG0276|consen  120 TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD-----------------------------------PNTFASASLDRT  164 (794)
T ss_pred             EEEEeeccCceeeeeEEcCcceEEEEEEecCCC-----------------------------------ccceeeeecccc
Confidence            9999999876 5678899999999999998852                                   567999999999


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY  418 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~--g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  418 (500)
                      |++|.+.. ..+...+.+|...|+|+.|-+-  -.+|++|+.|.+|+|||.++..|+.++.||...|..+          
T Consensus       165 VKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v----------  233 (794)
T KOG0276|consen  165 VKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFV----------  233 (794)
T ss_pred             EEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEE----------
Confidence            99999754 3566788999999999999874  4799999999999999999999999999999998877          


Q ss_pred             CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816          419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  497 (500)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i  497 (500)
                                       .|+|.=..+++||.||+||||+..+-++...+--..++||+++-.+.+..++.|.+.|.|.+
T Consensus       234 -----------------~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  234 -----------------FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             -----------------EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence                             35788889999999999999999988877777666789999999999889999998887765

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.6e-33  Score=294.73  Aligned_cols=297  Identities=20%  Similarity=0.384  Sum_probs=234.0

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--------ceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCe
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--------TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGE  173 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~  173 (500)
                      .+.+|.+.|.+++|+|+|++||+|+.|++|+|||....        .+...+. +...|.+++|++. +.+|++++.||+
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence            34569999999999999999999999999999997532        1222333 3467999999874 789999999999


Q ss_pred             EEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CC
Q 010816          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG  252 (500)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~  252 (500)
                      |++||+.+++... .+.+|...|.++.|+|.    +...|++|+.|++|++||++++.++..+..+ ..+.++.|.+ ++
T Consensus       557 v~lWd~~~~~~~~-~~~~H~~~V~~l~~~p~----~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g  630 (793)
T PLN00181        557 VQVWDVARSQLVT-EMKEHEKRVWSIDYSSA----DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESG  630 (793)
T ss_pred             EEEEECCCCeEEE-EecCCCCCEEEEEEcCC----CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCC
Confidence            9999998876543 46789999999999863    3358999999999999999999888887655 5788999954 34


Q ss_pred             -eEEEEeCCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816          253 -VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (500)
Q Consensus       253 -~l~t~~~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (500)
                       .+++|+.||.|++||+++++ .+..+.+|...|..+.+..                                     +.
T Consensus       631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-------------------------------------~~  673 (793)
T PLN00181        631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-------------------------------------SS  673 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-------------------------------------CC
Confidence             68999999999999998765 4667778888888887742                                     24


Q ss_pred             EEEEeeCCCeEEEEcCCCC-----CCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC-Cccc
Q 010816          331 RLVSGSDDFTMFLWEPAVS-----KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGP  404 (500)
Q Consensus       331 ~~~s~s~d~~v~~wd~~~~-----~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-h~~~  404 (500)
                      .+++++.|++|++||+...     ..+...+.+|...+++++|+|++++||+|+.|+.|++|+......+..+.. +...
T Consensus       674 ~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~  753 (793)
T PLN00181        674 TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP  753 (793)
T ss_pred             EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence            6899999999999998642     234556789999999999999999999999999999999876654433321 1111


Q ss_pred             EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                      +..+.               .......+..++|+|++..|++|+.||.|+||++
T Consensus       754 ~~~~~---------------~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        754 VSGLE---------------VDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ccccc---------------cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            11110               0112233555689999999999999999999986

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-35  Score=254.77  Aligned_cols=265  Identities=27%  Similarity=0.542  Sum_probs=224.6

Q ss_pred             ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 010816           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (500)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~  176 (500)
                      +.+...|.||++.|.+|+|+..|++||+++.|-.+++||..+ ..++..+.+|+..|.++.|-|.|++++|++.|.+|+.
T Consensus       140 g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~  219 (406)
T KOG0295|consen  140 GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKA  219 (406)
T ss_pred             hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeE
Confidence            356788999999999999999999999999999999999987 5566677899999999999999999999999999999


Q ss_pred             EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEE
Q 010816          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT  256 (500)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t  256 (500)
                      |+..+|-++. .+.+|..+|..+.     .+.++..+++++.|.++++|-+.+++|...++.|.-+|.|++|.+... ++
T Consensus       220 We~~tg~cv~-t~~~h~ewvr~v~-----v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~-~~  292 (406)
T KOG0295|consen  220 WECDTGYCVK-TFPGHSEWVRMVR-----VNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS-YP  292 (406)
T ss_pred             EecccceeEE-eccCchHhEEEEE-----ecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccccc-Cc
Confidence            9999998765 5889999988776     345778999999999999999999999999999999999999987532 11


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                      ...+        .++.                                                     .+....+.++|
T Consensus       293 ~i~~--------at~~-----------------------------------------------------~~~~~~l~s~S  311 (406)
T KOG0295|consen  293 SISE--------ATGS-----------------------------------------------------TNGGQVLGSGS  311 (406)
T ss_pred             chhh--------ccCC-----------------------------------------------------CCCccEEEeec
Confidence            1000        0000                                                     00123578888


Q ss_pred             CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF  416 (500)
Q Consensus       337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  416 (500)
                      .|++|++||+.... ....+.+|..+|..++|+|.|+||+++.+|+++++||++.+++..++..|...+.++.|      
T Consensus       312 rDktIk~wdv~tg~-cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf------  384 (406)
T KOG0295|consen  312 RDKTIKIWDVSTGM-CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF------  384 (406)
T ss_pred             ccceEEEEeccCCe-EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec------
Confidence            88889999876653 44567899999999999999999999999999999999999999999999999888854      


Q ss_pred             cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                                           ..+--++++|+-|.++++|..
T Consensus       385 ---------------------h~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  385 ---------------------HKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ---------------------CCCCceEEeccccceeeeeec
Confidence                                 445559999999999999964

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-33  Score=260.29  Aligned_cols=347  Identities=18%  Similarity=0.295  Sum_probs=256.9

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      +.-..-||.+..|-+-.+++++|+.|..|+||+..+.+.+..+..|.+.|.|++.+|...+++|+|.|-+|++||.+.+-
T Consensus        51 feV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w  130 (794)
T KOG0276|consen   51 FEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW  130 (794)
T ss_pred             eeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce
Confidence            33345689999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC---eEEEEeCC
Q 010816          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQD  260 (500)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~t~~~d  260 (500)
                      ...+.+.||...|.+++|+|.+.    ..|++++-|++|++|.+....+..++.||...|.|+.|-+.|   +|++|+.|
T Consensus       131 a~~qtfeGH~HyVMqv~fnPkD~----ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD  206 (794)
T KOG0276|consen  131 ACEQTFEGHEHYVMQVAFNPKDP----NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD  206 (794)
T ss_pred             eeeeEEcCcceEEEEEEecCCCc----cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence            77778999999999999999654    589999999999999999999999999999999999998766   89999999


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      .+|++||.++..+++++.+|.+.|..+.++|..+                                    .+++||.||+
T Consensus       207 ~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp------------------------------------iiisgsEDGT  250 (794)
T KOG0276|consen  207 LTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP------------------------------------IIISGSEDGT  250 (794)
T ss_pred             ceEEEeecchHHHHHHhhcccccceEEEecCCCc------------------------------------EEEEecCCcc
Confidence            9999999999999999999999999999988642                                    5899999999


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCc-------ccEEEEEeeee
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV-------GPVYQIRFELI  413 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~-------~~v~~~~~~~~  413 (500)
                      ++||...+-+... .+.-.-..++|++-.+.++.++.|...|.|.+ .+-..++...+....       +.+..+....+
T Consensus       251 vriWhs~Ty~lE~-tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~  328 (794)
T KOG0276|consen  251 VRIWNSKTYKLEK-TLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSV  328 (794)
T ss_pred             EEEecCcceehhh-hhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceec
Confidence            9999865443322 23334567999999998888999988776654 333333222211111       11221111110


Q ss_pred             ee-------ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEE
Q 010816          414 YC-------FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV  486 (500)
Q Consensus       414 ~~-------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l  486 (500)
                      ..       -+.|....-+....-....++.+|+|++++.++ ||.-.||..-..+.     .+.+.-....|++|..-.
T Consensus       329 ~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~Rn-----K~fG~~~eFvw~~dsne~  402 (794)
T KOG0276|consen  329 GAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALRN-----KAFGSGLEFVWAADSNEF  402 (794)
T ss_pred             cCcccccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehhh-----cccccceeEEEcCCCCeE
Confidence            00       011110000000011123356799999877665 67777775322111     122333456666665555


Q ss_pred             EEEeCCCcEEEe
Q 010816          487 ASGGKDRVLKLW  498 (500)
Q Consensus       487 ~s~~~D~~v~iW  498 (500)
                      +.--.++.|+++
T Consensus       403 avRes~~~vki~  414 (794)
T KOG0276|consen  403 AVRESNGNVKIF  414 (794)
T ss_pred             EEEecCCceEEE
Confidence            555555555554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.6e-36  Score=261.35  Aligned_cols=246  Identities=24%  Similarity=0.421  Sum_probs=217.1

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~  182 (500)
                      .+..|..+|.++.|+++|.++++|+.+|.|++|+..-.........|...|++++|+|+...+++||.||+|+|||....
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~  212 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP  212 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence            35789999999999999999999999999999997644333222345589999999999999999999999999998876


Q ss_pred             CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCC
Q 010816          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC  261 (500)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg  261 (500)
                      +... .+.+|.-.|.++.|+|..     ..+++||.|..|++||.+++.|+.++.+|...|..+.|++++ .|+++|.|.
T Consensus       213 kee~-vL~GHgwdVksvdWHP~k-----gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~  286 (464)
T KOG0284|consen  213 KEER-VLRGHGWDVKSVDWHPTK-----GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ  286 (464)
T ss_pred             chhh-eeccCCCCcceeccCCcc-----ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence            6543 468999999999999853     589999999999999999999999999999999999999875 799999999


Q ss_pred             eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (500)
Q Consensus       262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v  341 (500)
                      .+++||+++-+.+..+++|...|.++.++|-.                                   ...|.+|+.||.|
T Consensus       287 ~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~-----------------------------------~~lftsgg~Dgsv  331 (464)
T KOG0284|consen  287 SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN-----------------------------------ESLFTSGGSDGSV  331 (464)
T ss_pred             eEEEEehhHhHHHHHhhcchhhheeecccccc-----------------------------------ccceeeccCCCce
Confidence            99999999878888899999999999998752                                   4578999999999


Q ss_pred             EEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (500)
Q Consensus       342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~  389 (500)
                      ..|.+...........+|...|.+++|+|-|.+||+|+.|++++.|.-
T Consensus       332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            999987555555566789999999999999999999999999999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.2e-35  Score=254.90  Aligned_cols=228  Identities=31%  Similarity=0.587  Sum_probs=204.8

Q ss_pred             ccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCe
Q 010816          193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK  272 (500)
Q Consensus       193 ~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~  272 (500)
                      .+.|.++++.       ...+++|..|.+|+|||.....|+..+.||++.|.|+.|.. ..|++|+.|.+|++||..+|+
T Consensus       197 skgVYClQYD-------D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  197 SKGVYCLQYD-------DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             CCceEEEEec-------chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCc
Confidence            4567777763       35799999999999999999999999999999999999974 489999999999999999999


Q ss_pred             eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC-
Q 010816          273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-  351 (500)
Q Consensus       273 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~-  351 (500)
                      .+.++..|...|..+.++.                                      ..++++|.|.++.+||+..... 
T Consensus       269 ~l~tlihHceaVLhlrf~n--------------------------------------g~mvtcSkDrsiaVWdm~sps~i  310 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFSN--------------------------------------GYMVTCSKDRSIAVWDMASPTDI  310 (499)
T ss_pred             hhhHHhhhcceeEEEEEeC--------------------------------------CEEEEecCCceeEEEeccCchHH
Confidence            9999999999998888764                                      3689999999999999876543 


Q ss_pred             -CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccc
Q 010816          352 -PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSC  430 (500)
Q Consensus       352 -~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  430 (500)
                       ....+.||...|+.+.|+  .++++++|.|++|++|+..+++++.++.||...|.++++                    
T Consensus       311 t~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--------------------  368 (499)
T KOG0281|consen  311 TLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--------------------  368 (499)
T ss_pred             HHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--------------------
Confidence             234578999999999996  559999999999999999999999999999999888744                    


Q ss_pred             cceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       431 ~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                               .|+++++||.|.+|++||++.|.+++.+.||.+-|-++.|.  .+++++|+-||+|++|+
T Consensus       369 ---------r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWd  426 (499)
T KOG0281|consen  369 ---------RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWD  426 (499)
T ss_pred             ---------cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEe
Confidence                     78999999999999999999999999999999999999995  58999999999999997

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=4.3e-33  Score=269.79  Aligned_cols=284  Identities=33%  Similarity=0.608  Sum_probs=248.2

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~  185 (500)
                      |...+.+..|+  ..++++++.|++|++||..++..+.. +.||.+.|.+++|..-+.+|++|+.|.++++||..+|.+.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            56678888887  66799999999999999999988877 9999999999999876889999999999999999999886


Q ss_pred             cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEE
Q 010816          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV  265 (500)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~l  265 (500)
                      . .+.+|...+..+...+       ..+++||.|.+|++|++++++++..+.+|..+|.++..+ .+.+++|+.|++|++
T Consensus       285 ~-~l~gh~stv~~~~~~~-------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~V  355 (537)
T KOG0274|consen  285 H-SLQGHTSSVRCLTIDP-------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKV  355 (537)
T ss_pred             E-EecCCCceEEEEEccC-------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEE
Confidence            5 5779999998887544       367889999999999999999999999999999999998 678999999999999


Q ss_pred             EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (500)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd  345 (500)
                      ||..++++++.+.+|..+|.++.+...                                     ..+++|+.|++|++||
T Consensus       356 W~~~~~~cl~sl~gH~~~V~sl~~~~~-------------------------------------~~~~Sgs~D~~IkvWd  398 (537)
T KOG0274|consen  356 WDPRTGKCLKSLSGHTGRVYSLIVDSE-------------------------------------NRLLSGSLDTTIKVWD  398 (537)
T ss_pred             EEhhhceeeeeecCCcceEEEEEecCc-------------------------------------ceEEeeeeccceEeec
Confidence            999999999999999999999876531                                     4689999999999999


Q ss_pred             CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC-CcccEEEEEeeeeeeecCCCCcee
Q 010816          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQIRFELIYCFRYPSNFYC  424 (500)
Q Consensus       346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~  424 (500)
                      +.........+.+|...+..+.+  .+++|++++.|++|++||..+++++.++.+ |.+.+..+..              
T Consensus       399 l~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~--------------  462 (537)
T KOG0274|consen  399 LRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALAL--------------  462 (537)
T ss_pred             CCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeec--------------
Confidence            87764566778899988866554  588999999999999999999999999999 5677765522              


Q ss_pred             eeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC
Q 010816          425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG  469 (500)
Q Consensus       425 ~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~  469 (500)
                                     ....+++++.|+++++||++++++.+.+-.
T Consensus       463 ---------------~~~~il~s~~~~~~~l~dl~~~~~~~~l~~  492 (537)
T KOG0274|consen  463 ---------------GKEEILCSSDDGSVKLWDLRSGTLIRTLLS  492 (537)
T ss_pred             ---------------CcceEEEEecCCeeEEEecccCchhhhhhh
Confidence                           246789999999999999999988876633

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.7e-35  Score=247.53  Aligned_cols=283  Identities=28%  Similarity=0.412  Sum_probs=238.6

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe--------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--------TGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~--------~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w  177 (500)
                      |...-+-|..|+|||++|++|+.||-|.+||..+++....+        --+.++|.|+.|+.|+..||+|+.||+|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            55666889999999999999999999999999887654332        3478899999999999999999999999999


Q ss_pred             eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEE
Q 010816          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT  256 (500)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t  256 (500)
                      .+.+|.+.+..-.+|...|+++.|+.     ++..++++|.|.++|+.-+..++++..++||...|+.+.|.+|| .+++
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSr-----D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis  365 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSR-----DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS  365 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEcc-----CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence            99999998877779999999999875     45689999999999999999999999999999999999999987 6999


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecC--CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGH--GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (500)
                      ++.||+|++|+..++.++.+++..  ..+|.++..-|.                                   +++.++.
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK-----------------------------------npeh~iV  410 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK-----------------------------------NPEHFIV  410 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC-----------------------------------CCceEEE
Confidence            999999999999999998888643  334555544332                                   3567888


Q ss_pred             eeCCCeEEEEcCCCCCCCceeee-c--ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEee
Q 010816          335 GSDDFTMFLWEPAVSKQPKTRMT-G--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE  411 (500)
Q Consensus       335 ~s~d~~v~~wd~~~~~~~~~~~~-~--h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  411 (500)
                      +...+++++-++..  +....+. |  ..+...+.+.||.|.++.+.+.|+.++.|.+.+|++-.++..|+..+..+   
T Consensus       411 CNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl---  485 (508)
T KOG0275|consen  411 CNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL---  485 (508)
T ss_pred             EcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccc---
Confidence            98999999887642  2222221 1  12345667899999999999999999999999999999999888776655   


Q ss_pred             eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD  457 (500)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd  457 (500)
                                              +.+|...+||+=+.||.+++|.
T Consensus       486 ------------------------~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  486 ------------------------THHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ------------------------ccCcccchhhhhcccchhhhcC
Confidence                                    4578999999999999999994

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-33  Score=231.13  Aligned_cols=280  Identities=23%  Similarity=0.431  Sum_probs=225.4

Q ss_pred             EEEEEcCC-CCeEE--EE-----eCCCcEEEEeCCCCceeEEec--CCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q 010816          112 LSVAFSPD-GRQLA--SG-----SGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       112 ~~~~~sp~-~~~la--t~-----~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~  180 (500)
                      .+++|||- .++||  ++     .+.|.+.|-++...+.+..+.  .-++.+..|+|+++ .+.+++++.||++++||..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            46789984 23343  33     257889999987544443332  34678999999986 4688899999999999965


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC--CeEEEEe
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTGS  258 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~t~~  258 (500)
                      ........++.|+..|.++.|++..    .+.++++|+|++||+|+...++.+.++.||...|....|+|.  +.+++++
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~----r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVR----RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             CCCcchhHHHhhhhheEEecccccc----ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence            4444445678999999999998854    357899999999999999999999999999999999999874  6899999


Q ss_pred             CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      .|+++++||++.......+..|...+.++.++.-                                   ....+++|+.|
T Consensus       168 gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky-----------------------------------~~~vl~Tg~vd  212 (311)
T KOG0277|consen  168 GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY-----------------------------------NHNVLATGGVD  212 (311)
T ss_pred             CCceEEEEEecCCCceeEEEeccceeEeeccccc-----------------------------------CCcEEEecCCC
Confidence            9999999998865444447778878888877642                                   24578999999


Q ss_pred             CeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeee
Q 010816          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCF  416 (500)
Q Consensus       339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~  416 (500)
                      +.|+.||++.-+.+...+.+|.-.|+.+.|||. ..+||++++|-++||||...+ .++.++.-|+..+..+.       
T Consensus       213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~D-------  285 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLD-------  285 (311)
T ss_pred             ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccc-------
Confidence            999999999989999999999999999999995 578999999999999999854 44566666666665553       


Q ss_pred             cCCCCceeeeeccccceeeEEcC-CCCEEEEEECCCcEEEEE
Q 010816          417 RYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVWD  457 (500)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iwd  457 (500)
                                          ||+ ++.++|+.+.|..++||+
T Consensus       286 --------------------ws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  286 --------------------WSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             --------------------cccccCceeeecccccceeeec
Confidence                                332 567999999999999997

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.5e-32  Score=237.55  Aligned_cols=315  Identities=19%  Similarity=0.336  Sum_probs=248.6

Q ss_pred             CCeeeEEEEEEeecceEe----------EEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee
Q 010816           76 VSVEKVLSIVYQPQAVFR----------IRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM  143 (500)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~  143 (500)
                      .+...+..+...|...+-          +|..  +....++.||++.|+++.|+.||.+||||+.+|.|+||...++...
T Consensus        62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~  141 (399)
T KOG0296|consen   62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ  141 (399)
T ss_pred             hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE
Confidence            345566777777643221          1221  2245678999999999999999999999999999999999999887


Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (500)
Q Consensus       144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~  223 (500)
                      ..+..--..+.-+.|+|-+..|+.|+.||.+-.|.+.++.. .+.+.||+.++++-.|.|     ++++++++..||+|+
T Consensus       142 ~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-~kv~~Gh~~~ct~G~f~p-----dGKr~~tgy~dgti~  215 (399)
T KOG0296|consen  142 WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-CKVMSGHNSPCTCGEFIP-----DGKRILTGYDDGTII  215 (399)
T ss_pred             EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce-eeEecCCCCCcccccccC-----CCceEEEEecCceEE
Confidence            77765667788999999999999999999999999987533 346889999999888776     578999999999999


Q ss_pred             EEECCCCeEEEEecCc-cccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeec--------CCceEEEEEecCcc
Q 010816          224 IWDVSLRKCVICLSGH-TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG--------HGHWVNSLALSTEY  293 (500)
Q Consensus       224 iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~  293 (500)
                      +||+.+++.+..+.+. ...-+++.++..+ .++.|..++.+++-+..+|+.+....+        +...+.++.+.+- 
T Consensus       216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~-  294 (399)
T KOG0296|consen  216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS-  294 (399)
T ss_pred             EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc-
Confidence            9999999888776532 3445677777665 467788999999999888887765542        1111111111110 


Q ss_pred             eeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC
Q 010816          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (500)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~  373 (500)
                                                      ...-...++|+-||+|.|||.....  .+..-.|+..|..+.|-+ ..
T Consensus       295 --------------------------------ss~lpL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~-t~  339 (399)
T KOG0296|consen  295 --------------------------------SSKLPLAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN-TD  339 (399)
T ss_pred             --------------------------------ccccchhhcccccceEEEEecccch--hheeccCCCceEEEEEcC-cc
Confidence                                            0011246889999999999976433  345567899999999999 78


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcE
Q 010816          374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (500)
Q Consensus       374 ~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v  453 (500)
                      +|++++.||.|+.||.++|+++.++.||..+|..+                           +.+|+.++++++|.|++.
T Consensus       340 ~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f---------------------------~ls~~~~~vvT~s~D~~a  392 (399)
T KOG0296|consen  340 YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDF---------------------------ALSPQKRLVVTVSDDNTA  392 (399)
T ss_pred             hheeeccCceEEeeeccccceEEEEecCchheeEE---------------------------EEcCCCcEEEEecCCCeE
Confidence            99999999999999999999999999999999887                           568999999999999999


Q ss_pred             EEEECC
Q 010816          454 KVWDIR  459 (500)
Q Consensus       454 ~iwd~~  459 (500)
                      +||+..
T Consensus       393 ~VF~v~  398 (399)
T KOG0296|consen  393 LVFEVP  398 (399)
T ss_pred             EEEecC
Confidence            999863

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=4.3e-34  Score=234.80  Aligned_cols=287  Identities=25%  Similarity=0.390  Sum_probs=242.1

Q ss_pred             cccCCcccEEEEEEcC---CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          103 TIAGHTEAVLSVAFSP---DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp---~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      +..||+.+|..++|+|   +|-+|++++.|+.-.+-+-+++.-+-++.||.+.|.+...+.+..+-|+++.|-+-++||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            4579999999999986   7889999999999999888899888999999999999999998888999999999999999


Q ss_pred             CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-eEEEEecCccccEEEEEeC-CCCeEEEE
Q 010816          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWG-GDGVIYTG  257 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~-~~~~l~t~  257 (500)
                      -+|..+-  ...|+..|.+++|..     +..++++|+.+..+||+|++.. .....+.+|+..|..+.|. .|..|+++
T Consensus        89 ~tgdelh--sf~hkhivk~~af~~-----ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   89 VTGDELH--SFEHKHIVKAVAFSQ-----DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhh--hhhhhheeeeEEecc-----cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence            9987643  346777888888754     5678999999999999999765 4567789999999999986 46678899


Q ss_pred             eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      +.|++||+||.++|+.++++.. ..+|.++-++++                                     ..+++-..
T Consensus       162 add~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~d-------------------------------------G~ilTia~  203 (334)
T KOG0278|consen  162 ADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQD-------------------------------------GRILTIAY  203 (334)
T ss_pred             ccCCceEEEEeccCcEEEEEec-CCCCcceeeccC-------------------------------------CCEEEEec
Confidence            9999999999999999988763 345666666554                                     24666777


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE-eCCcccEEEEEeeeeeee
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQIRFELIYCF  416 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~  416 (500)
                      .+.|.+||...-...+  -..-+..|.+.+.+|+-..+++|+.|+.++.||..+|+.+..+ ++|-++|.+++|      
T Consensus       204 gssV~Fwdaksf~~lK--s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF------  275 (334)
T KOG0278|consen  204 GSSVKFWDAKSFGLLK--SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF------  275 (334)
T ss_pred             CceeEEecccccccee--eccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEE------
Confidence            7889999975432221  1223466889999999999999999999999999999999886 999999999954      


Q ss_pred             cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc
Q 010816          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL  463 (500)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~  463 (500)
                                           +|+|...|+||.||+|+||.+..++.
T Consensus       276 ---------------------SPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  276 ---------------------SPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ---------------------CCCCceeeccCCCceEEEEEecCCCc
Confidence                                 99999999999999999999876554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-33  Score=229.63  Aligned_cols=283  Identities=21%  Similarity=0.361  Sum_probs=216.6

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~  182 (500)
                      .+.||..+++.+.++.+|.+|++++.|.++.||-..+++.+-.+.||++.|.|+..+.+.++|++|+.|.++++||+++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            36799999999999999999999999999999999899999999999999999999999999999999999999999988


Q ss_pred             CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC---
Q 010816          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ---  259 (500)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~---  259 (500)
                      +++..                                     |+            -..+|..+.|+.++.++..+.   
T Consensus        85 k~la~-------------------------------------~k------------~~~~Vk~~~F~~~gn~~l~~tD~~  115 (327)
T KOG0643|consen   85 KQLAT-------------------------------------WK------------TNSPVKRVDFSFGGNLILASTDKQ  115 (327)
T ss_pred             cEEEE-------------------------------------ee------------cCCeeEEEeeccCCcEEEEEehhh
Confidence            75321                                     11            122344555655554443333   


Q ss_pred             ---CCeEEEEeCCCCe-------eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816          260 ---DCTIKVWETTQGK-------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (500)
Q Consensus       260 ---dg~i~lwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (500)
                         .+.|.++|++...       ++..+..+...+....+.+                                    .+
T Consensus       116 mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~------------------------------------l~  159 (327)
T KOG0643|consen  116 MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP------------------------------------LG  159 (327)
T ss_pred             cCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc------------------------------------cC
Confidence               3567788876332       2222333333333333322                                    35


Q ss_pred             cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEE
Q 010816          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR  409 (500)
Q Consensus       330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~  409 (500)
                      +.+++|..||.|..||.+...........|...|+.+.++||..+++++|.|.+-++||..+.++++++.. ..|+++. 
T Consensus       160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~a-  237 (327)
T KOG0643|consen  160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTA-  237 (327)
T ss_pred             CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccce-
Confidence            68999999999999999887766666678889999999999999999999999999999999999888763 3344444 


Q ss_pred             eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CC-------------cEEEEECCCccccccccCcccCEE
Q 010816          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DS-------------TLKVWDIRTQKLKQDLPGHADEVF  475 (500)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~-------------~v~iwd~~~~~~~~~~~~h~~~V~  475 (500)
                                                +++|...+++.|+. +-             ..|+|++-..+.+..++||.++|+
T Consensus       238 --------------------------aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPIN  291 (327)
T KOG0643|consen  238 --------------------------AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPIN  291 (327)
T ss_pred             --------------------------ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcc
Confidence                                      34665555554432 21             124455445566778899999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEe
Q 010816          476 AVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       476 ~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      +|+|+|||+-.+|||.||.||+.
T Consensus       292 svAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  292 SVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             eeEECCCCcccccCCCCceEEEE
Confidence            99999999999999999999985

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.4e-33  Score=234.83  Aligned_cols=321  Identities=23%  Similarity=0.386  Sum_probs=244.0

Q ss_pred             cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      .+...+.||.+.|+.++.......+.+++.|.+.+||.++++.++..+.||.+.|.|+.|++.+.++++++.|++..||.
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            45677899999999999988888999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCccc--ccccCccc--ceEEEEeeeeecCCCCceEEEE--eCCC-cEEEEECCCCeEEEEecCccccEEEEEeCCC
Q 010816          179 PQTGKPSG--NPLSGHKK--WITGISWEPVHLNAPCRRFVSA--SKDG-DARIWDVSLRKCVICLSGHTLAVTCVKWGGD  251 (500)
Q Consensus       179 ~~~~~~~~--~~~~~~~~--~v~~~~~~~~~~~~~~~~~~s~--s~dg-~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  251 (500)
                      ..-.-...  ....+|..  .+..-.        .......+  ..|| +|       ...+..+.+|...|.+..|-..
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sD--------e~~~d~d~~~~sD~~ti-------RvPl~~ltgH~~vV~a~dWL~g  283 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSD--------EHNRDTDSSEKSDGHTI-------RVPLMRLTGHRAVVSACDWLAG  283 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhccc--------ccccccccccccCCcee-------eeeeeeeeccccceEehhhhcC
Confidence            32111100  00112211  010000        00111111  1222 22       3456678899999999999755


Q ss_pred             C-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816          252 G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (500)
Q Consensus       252 ~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (500)
                      + .++++++|.+..+||+.+|..+..+.+|.+..+-++.+|.                                    ..
T Consensus       284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt------------------------------------Qr  327 (481)
T KOG0300|consen  284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT------------------------------------QR  327 (481)
T ss_pred             cceeeeeeccccceeeeeccCceeccccCcchhccccccCCc------------------------------------ce
Confidence            4 6999999999999999999999999999887776665543                                    34


Q ss_pred             EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeCCcccEEEEE
Q 010816          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQIR  409 (500)
Q Consensus       331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~-~~~~~~~h~~~v~~~~  409 (500)
                      .++++|.|.+.++||.+...+....+.||++.|+++.|..+. .+++|+.|++|++||++.-+ .+.+++. ..+++.+ 
T Consensus       328 LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRv-  404 (481)
T KOG0300|consen  328 LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRV-  404 (481)
T ss_pred             EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec-CCcccee-
Confidence            578899999999999987777888899999999999998765 48899999999999987643 2333321 1222222 


Q ss_pred             eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc----cccCcccCEEEEEEcCCC--
Q 010816          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ----DLPGHADEVFAVDWSPDG--  483 (500)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~----~~~~h~~~V~~l~~s~dg--  483 (500)
                                                +.+..+..+|.--.+..|++||+...++.+    .-.||...|.+++|..+-  
T Consensus       405 --------------------------avs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~  458 (481)
T KOG0300|consen  405 --------------------------AVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPA  458 (481)
T ss_pred             --------------------------EeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcc
Confidence                                      445666678877788899999998766532    346899999999997653  


Q ss_pred             CEEEEEeCCCcEEEec
Q 010816          484 EKVASGGKDRVLKLWM  499 (500)
Q Consensus       484 ~~l~s~~~D~~v~iW~  499 (500)
                      .-|++||-|..+.-|.
T Consensus       459 cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  459 CNLFTCGFDRMVAGWK  474 (481)
T ss_pred             cccccccccceeeeeE
Confidence            4689999999998885

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1e-32  Score=237.81  Aligned_cols=242  Identities=26%  Similarity=0.494  Sum_probs=220.5

Q ss_pred             ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEE
Q 010816          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKV  265 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~l  265 (500)
                      ..+.+|..+|.++++.|.     ...|++|+.|++++|||+.+++...++.||...|..+++++- .++++++.|+.|+-
T Consensus       145 rVi~gHlgWVr~vavdP~-----n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC  219 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPG-----NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC  219 (460)
T ss_pred             hhhhhccceEEEEeeCCC-----ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence            357899999999999884     358999999999999999999999999999999999999864 48999999999999


Q ss_pred             EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (500)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd  345 (500)
                      ||+...+.++.+.+|-..|.+++.+|.                                    -+.+++|+.|.++++||
T Consensus       220 wDLe~nkvIR~YhGHlS~V~~L~lhPT------------------------------------ldvl~t~grDst~RvWD  263 (460)
T KOG0285|consen  220 WDLEYNKVIRHYHGHLSGVYCLDLHPT------------------------------------LDVLVTGGRDSTIRVWD  263 (460)
T ss_pred             EechhhhhHHHhccccceeEEEecccc------------------------------------ceeEEecCCcceEEEee
Confidence            999999999999999999999998874                                    25799999999999999


Q ss_pred             CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceee
Q 010816          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV  425 (500)
Q Consensus       346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  425 (500)
                      ++.. .....+.||...|.+|.+.|-...+++||.|++|++||+..|+-..++..|+..+.++                 
T Consensus       264 iRtr-~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral-----------------  325 (460)
T KOG0285|consen  264 IRTR-ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRAL-----------------  325 (460)
T ss_pred             eccc-ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEE-----------------
Confidence            8764 4567899999999999999988889999999999999999999999999999888877                 


Q ss_pred             eeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          426 VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       426 ~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                                +.+|....+|+++.|. |+-|++..++.+..+.+|++.|++++.+.|| .+++|++.|.+..|+
T Consensus       326 ----------~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwd  387 (460)
T KOG0285|consen  326 ----------CLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWD  387 (460)
T ss_pred             ----------ecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence                      3478888999999886 9999999999999999999999999998886 789999999999997

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=7.2e-32  Score=261.34  Aligned_cols=273  Identities=31%  Similarity=0.522  Sum_probs=242.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC
Q 010816          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (500)
Q Consensus       149 h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~  228 (500)
                      +...+.|..|.  ..++++++.|++|++||..++......+.+|.+.|.++.+..     .+..+++|+.|.++++||..
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-----~~~~lvsgS~D~t~rvWd~~  279 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-----GGDKLVSGSTDKTERVWDCS  279 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-----CCCEEEEEecCCcEEeEecC
Confidence            56678888887  568999999999999999999888777999999999998743     34689999999999999999


Q ss_pred             CCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCC
Q 010816          229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (500)
Q Consensus       229 ~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (500)
                      +++|...+.+|...|.++...+ ..+++|+.|.+|++|++.++..+..+.+|..+|.++....                 
T Consensus       280 sg~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~-----------------  341 (537)
T KOG0274|consen  280 TGECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDE-----------------  341 (537)
T ss_pred             CCcEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecC-----------------
Confidence            9999999999999999998654 4677899999999999999999999999999999998652                 


Q ss_pred             CHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (500)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd  388 (500)
                                           ..+++|+.|++|++||+. .......+.+|...|.++.+.+. ..+++|+.|++|++||
T Consensus       342 ---------------------~~lvsgs~d~~v~VW~~~-~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWd  398 (537)
T KOG0274|consen  342 ---------------------PLLVSGSYDGTVKVWDPR-TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWD  398 (537)
T ss_pred             ---------------------CEEEEEecCceEEEEEhh-hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeec
Confidence                                 469999999999999987 44567788999999999988766 8999999999999999


Q ss_pred             CCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc
Q 010816          389 GTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL  467 (500)
Q Consensus       389 ~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~  467 (500)
                      +.++ +++.++.+|..-+..+                             ...+++|++++.|++|++||...+++++.+
T Consensus       399 l~~~~~c~~tl~~h~~~v~~l-----------------------------~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~  449 (537)
T KOG0274|consen  399 LRTKRKCIHTLQGHTSLVSSL-----------------------------LLRDNFLVSSSADGTIKLWDAEEGECLRTL  449 (537)
T ss_pred             CCchhhhhhhhcCCccccccc-----------------------------ccccceeEeccccccEEEeecccCceeeee
Confidence            9999 9999999999877655                             346789999999999999999999999999


Q ss_pred             cC-cccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          468 PG-HADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       468 ~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      .+ |...|+.+++.  ...+++++.|+++++|+.
T Consensus       450 ~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl  481 (537)
T KOG0274|consen  450 EGRHVGGVSALALG--KEEILCSSDDGSVKLWDL  481 (537)
T ss_pred             ccCCcccEEEeecC--cceEEEEecCCeeEEEec
Confidence            88 77889999887  467899999999999973

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-31  Score=261.04  Aligned_cols=240  Identities=32%  Similarity=0.613  Sum_probs=208.8

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC
Q 010816          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (500)
Q Consensus       149 h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~  227 (500)
                      |...|.|+.|+++|+.+++++.|+.+++|+..+++ .....+.+|...|..++|.|     ++..+++++.|++++|||+
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-----d~~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-----DGSYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-----CCcEEEEecCCceEEEeec
Confidence            37889999999999999999999999999997666 12334589999999999987     4568999999999999999


Q ss_pred             -CCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCC
Q 010816          228 -SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (500)
Q Consensus       228 -~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (500)
                       ..+.+++++.+|...|++++|++++ .+++|+.|++|++||++++++.+.                             
T Consensus       233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~-----------------------------  283 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK-----------------------------  283 (456)
T ss_pred             cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe-----------------------------
Confidence             5568999999999999999999987 788999999999999987665443                             


Q ss_pred             CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEE
Q 010816          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK  385 (500)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~  385 (500)
                                                                        +.+|.+.|++++|+++|++|++++.|+.|+
T Consensus       284 --------------------------------------------------l~~hs~~is~~~f~~d~~~l~s~s~d~~i~  313 (456)
T KOG0266|consen  284 --------------------------------------------------LKGHSDGISGLAFSPDGNLLVSASYDGTIR  313 (456)
T ss_pred             --------------------------------------------------eeccCCceEEEEECCCCCEEEEcCCCccEE
Confidence                                                              346777899999999999999999999999


Q ss_pred             EEeCCCCc--eEEEEeCCccc--EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc
Q 010816          386 LWNGTTGK--FVAVFRGHVGP--VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ  461 (500)
Q Consensus       386 lwd~~~~~--~~~~~~~h~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~  461 (500)
                      +||+.++.  ++..+.++..+  ++.+                           .|+|++.++++++.|+.+++||+..+
T Consensus       314 vwd~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  314 VWDLETGSKLCLKLLSGAENSAPVTSV---------------------------QFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             EEECCCCceeeeecccCCCCCCceeEE---------------------------EECCCCcEEEEecCCCeEEEEEccCC
Confidence            99999999  56777776655  5544                           56999999999999999999999999


Q ss_pred             cccccccCcccC---EEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          462 KLKQDLPGHADE---VFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       462 ~~~~~~~~h~~~---V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +......+|...   +++...++.++++++|+.|+.|++|+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~  407 (456)
T KOG0266|consen  367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWD  407 (456)
T ss_pred             cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEe
Confidence            999999998774   44556688999999999999999997

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.1e-31  Score=220.44  Aligned_cols=277  Identities=25%  Similarity=0.414  Sum_probs=225.5

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (500)
Q Consensus       145 ~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~  223 (500)
                      .+.+|.+.|.+|+|+.+|..|++|+.|+++++|+++..+... ....+|...|..+.|.|.+.    .+|++++.|.+|+
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~----d~~atas~dk~ir   90 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP----DLFATASGDKTIR   90 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC----cceEEecCCceEE
Confidence            356899999999999999999999999999999988664322 24678999999999998654    4899999999999


Q ss_pred             EEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816          224 IWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (500)
Q Consensus       224 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (500)
                      +||++.++|+.........+. +.|+|+| +++.++.|..|...|.++.+.....+. ...+..+.+..           
T Consensus        91 ~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~-----------  157 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNN-----------  157 (313)
T ss_pred             EEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecC-----------
Confidence            999999999887654444443 5677765 788999999999999988766554332 22333443331           


Q ss_pred             CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC
Q 010816          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (500)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg  382 (500)
                                               .++.|+.....|.|.|-... .-.+...++.|+....|+.|+|+|++||+|+.|.
T Consensus       158 -------------------------~nd~Fflt~GlG~v~ILsyp-sLkpv~si~AH~snCicI~f~p~GryfA~GsADA  211 (313)
T KOG1407|consen  158 -------------------------SNDLFFLTNGLGCVEILSYP-SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA  211 (313)
T ss_pred             -------------------------CCCEEEEecCCceEEEEecc-ccccccccccCCcceEEEEECCCCceEeeccccc
Confidence                                     23456666677888876643 3456778899999999999999999999999999


Q ss_pred             cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc
Q 010816          383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK  462 (500)
Q Consensus       383 ~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~  462 (500)
                      .+.+||++..-|++.+.-+.-||..+                           +||.||++||+||.|..|-|=++++|.
T Consensus       212 lvSLWD~~ELiC~R~isRldwpVRTl---------------------------SFS~dg~~lASaSEDh~IDIA~vetGd  264 (313)
T KOG1407|consen  212 LVSLWDVDELICERCISRLDWPVRTL---------------------------SFSHDGRMLASASEDHFIDIAEVETGD  264 (313)
T ss_pred             eeeccChhHhhhheeeccccCceEEE---------------------------EeccCcceeeccCccceEEeEecccCC
Confidence            99999999988888888888888877                           568999999999999999999999998


Q ss_pred             ccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          463 LKQDLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       463 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      .+-.++ +.++.+.|+|+|....||-+.+|
T Consensus       265 ~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  265 RVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             eEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            877665 67889999999999999988765

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.3e-32  Score=229.68  Aligned_cols=246  Identities=26%  Similarity=0.474  Sum_probs=205.3

Q ss_pred             eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc
Q 010816          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (500)
Q Consensus       142 ~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~  221 (500)
                      ++..+.+|++.|..+.|+|+|..||||+.|..|.+|+......-...+.+|+..|..+.|.+     ++..++++|.|.+
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-----d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-----DGSHILSCGTDKT  113 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-----CCCEEEEecCCce
Confidence            44567799999999999999999999999999999996543333345779999999999876     5578999999999


Q ss_pred             EEEEECCCCeEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816          222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (500)
Q Consensus       222 v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (500)
                      ++.||++++++++.+++|+.-|.++.-+.-|  .+.+|+.|++++|||.++...++.+.                     
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---------------------  172 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---------------------  172 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---------------------
Confidence            9999999999999999999998888743223  46677888888888877643332211                     


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe
Q 010816          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (500)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs  379 (500)
                                                                                 .+..++++.|..++..+.+|+
T Consensus       173 -----------------------------------------------------------~kyqltAv~f~d~s~qv~sgg  193 (338)
T KOG0265|consen  173 -----------------------------------------------------------NKYQLTAVGFKDTSDQVISGG  193 (338)
T ss_pred             -----------------------------------------------------------cceeEEEEEecccccceeecc
Confidence                                                                       123477889999999999999


Q ss_pred             CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       380 ~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                      -|+.|++||++......+++||..+|..+                           +.+|+|.++.+-+.|.++++||++
T Consensus       194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~l---------------------------sls~~gs~llsnsMd~tvrvwd~r  246 (338)
T KOG0265|consen  194 IDNDIKVWDLRKNDGLYTLSGHADTITGL---------------------------SLSRYGSFLLSNSMDNTVRVWDVR  246 (338)
T ss_pred             ccCceeeeccccCcceEEeecccCceeeE---------------------------EeccCCCccccccccceEEEEEec
Confidence            99999999999999999999999999888                           458999999999999999999997


Q ss_pred             C----ccccccccCccc----CEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          460 T----QKLKQDLPGHAD----EVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       460 ~----~~~~~~~~~h~~----~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      .    .+++..+.||..    -...++|+|++.++..|+.|+.+++|+
T Consensus       247 p~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd  294 (338)
T KOG0265|consen  247 PFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWD  294 (338)
T ss_pred             ccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEee
Confidence            5    455667777643    346789999999999999999999997

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=6.9e-33  Score=243.26  Aligned_cols=291  Identities=22%  Similarity=0.402  Sum_probs=224.6

Q ss_pred             ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (500)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~  175 (500)
                      ..+...+..|.+.|..+.|-++...|++|+.|..|++|++...+  ....+.|-.+.|+++.|.++++++++++.|+.++
T Consensus       165 S~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  165 SRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence            34556678899999999999999999999999999999987765  4456778888999999999999999999999999


Q ss_pred             EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEE
Q 010816          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY  255 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~  255 (500)
                      +|+....+.. ..+.+|.+.|+++.|...+     .++++|+.|.++++||+....|..+...- ..+..+..+ ...++
T Consensus       245 ~Wnvd~~r~~-~TLsGHtdkVt~ak~~~~~-----~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~-~~~~~  316 (459)
T KOG0288|consen  245 LWNVDSLRLR-HTLSGHTDKVTAAKFKLSH-----SRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS-ISDVI  316 (459)
T ss_pred             eeeccchhhh-hhhcccccceeeehhhccc-----cceeeccccchhhhhhhhhhheecccccc-ccccceEec-ceeee
Confidence            9999887654 4688999999999875432     34899999999999999887776543211 112222222 22344


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  335 (500)
                      +|-.|+.||+||.+.+.....                                                           
T Consensus       317 SgH~DkkvRfwD~Rs~~~~~s-----------------------------------------------------------  337 (459)
T KOG0288|consen  317 SGHFDKKVRFWDIRSADKTRS-----------------------------------------------------------  337 (459)
T ss_pred             ecccccceEEEeccCCceeeE-----------------------------------------------------------
Confidence            555566666666554433222                                                           


Q ss_pred             eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC  415 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  415 (500)
                                          ...+ +.|++|..+++|..|.+++.|.++.+.|+++.+....+.+-...           
T Consensus       338 --------------------v~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k-----------  385 (459)
T KOG0288|consen  338 --------------------VPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK-----------  385 (459)
T ss_pred             --------------------eecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc-----------
Confidence                                1122 36889999999999999999999999999998877766542111           


Q ss_pred             ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCccc--CEEEEEEcCCCCEEEEEeCCC
Q 010816          416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD--EVFAVDWSPDGEKVASGGKDR  493 (500)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~--~V~~l~~s~dg~~l~s~~~D~  493 (500)
                              +    .+-.+.+.|||++.|+|+||.||.|+||++.++++.+.+.....  .|++++|+|.|..|++++.++
T Consensus       386 --------~----asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  386 --------C----ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             --------c----ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence                    0    01123346899999999999999999999999998877665333  699999999999999999999


Q ss_pred             cEEEec
Q 010816          494 VLKLWM  499 (500)
Q Consensus       494 ~v~iW~  499 (500)
                      .+.+|.
T Consensus       454 ~v~lW~  459 (459)
T KOG0288|consen  454 AVTLWT  459 (459)
T ss_pred             ceEecC
Confidence            999995

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-32  Score=226.61  Aligned_cols=282  Identities=26%  Similarity=0.451  Sum_probs=230.4

Q ss_pred             EEecCCCCCEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816          144 FKCTGHKNWVLCIAWSA---DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (500)
Q Consensus       144 ~~~~~h~~~v~~v~~s~---~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg  220 (500)
                      ..+.||+.+|..++|+|   +|-+|++++.|+.=.+-+-++|..+. .+.+|++.|-+...+     .+..+-++++.|-
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig-tfeghkgavw~~~l~-----~na~~aasaaadf   81 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG-TFEGHKGAVWSATLN-----KNATRAASAAADF   81 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE-eeeccCcceeeeecC-----chhhhhhhhcccc
Confidence            46789999999999985   78899999999998888888887765 578999888665543     3345678999999


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeec
Q 010816          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTG  298 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~  298 (500)
                      +.++||.-++..+..| .|..-|.+++|+.|. .|++|+.+..+|+||+...+ ...++.+|...|..+.+...      
T Consensus        82 takvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e------  154 (334)
T KOG0278|consen   82 TAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE------  154 (334)
T ss_pred             hhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc------
Confidence            9999999988877765 577789999999874 69999999999999987654 35667788888887766532      


Q ss_pred             cccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE
Q 010816          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA  378 (500)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg  378 (500)
                                                    ...+++++.|++|++||.+..........  ...|+++-++++|++|.+ 
T Consensus       155 ------------------------------D~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEvs~dG~ilTi-  201 (334)
T KOG0278|consen  155 ------------------------------DKCILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEVSQDGRILTI-  201 (334)
T ss_pred             ------------------------------CceEEeeccCCceEEEEeccCcEEEEEec--CCCCcceeeccCCCEEEE-
Confidence                                          24588889999999999887654433332  356999999999997755 


Q ss_pred             eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       379 s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                      ++.+.|+.||..+-..++.++                            +++.+...+.+|+...+++|+.|..++.||.
T Consensus       202 a~gssV~Fwdaksf~~lKs~k----------------------------~P~nV~SASL~P~k~~fVaGged~~~~kfDy  253 (334)
T KOG0278|consen  202 AYGSSVKFWDAKSFGLLKSYK----------------------------MPCNVESASLHPKKEFFVAGGEDFKVYKFDY  253 (334)
T ss_pred             ecCceeEEeccccccceeecc----------------------------CccccccccccCCCceEEecCcceEEEEEec
Confidence            477889999998877665443                            2333344466899999999999999999999


Q ss_pred             CCccccccc-cCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          459 RTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       459 ~~~~~~~~~-~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      .+++.+..+ .||-++|-+|.|+|||..-++||.||+|+||+
T Consensus       254 ~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  254 NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             cCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence            999998885 89999999999999999999999999999997

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-31  Score=216.54  Aligned_cols=243  Identities=22%  Similarity=0.402  Sum_probs=200.5

Q ss_pred             eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (500)
Q Consensus       143 ~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v  222 (500)
                      +..+..|.++|..+.|+-||++.++|+.|.+|++|++..|..+. ...+|...|..++..     .+...|++|+.|+.+
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-tYsghG~EVlD~~~s-----~Dnskf~s~GgDk~v   83 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-TYSGHGHEVLDAALS-----SDNSKFASCGGDKAV   83 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-eecCCCceeeecccc-----ccccccccCCCCceE
Confidence            34567899999999999999999999999999999999887664 577888888776543     355689999999999


Q ss_pred             EEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (500)
Q Consensus       223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (500)
                      .+||+.+++.+..+++|.+.|..+.|+.+. .+++|+.|.++++||.+....                            
T Consensus        84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~----------------------------  135 (307)
T KOG0316|consen   84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF----------------------------  135 (307)
T ss_pred             EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC----------------------------
Confidence            999999999999999999999999998765 578899999999999875321                            


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC
Q 010816          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (500)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D  381 (500)
                                                                       .|.+.+....+.|.++..+  +..|++||.|
T Consensus       136 -------------------------------------------------ePiQildea~D~V~Si~v~--~heIvaGS~D  164 (307)
T KOG0316|consen  136 -------------------------------------------------EPIQILDEAKDGVSSIDVA--EHEIVAGSVD  164 (307)
T ss_pred             -------------------------------------------------CccchhhhhcCceeEEEec--ccEEEeeccC
Confidence                                                             0111111223446666554  5679999999


Q ss_pred             CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc
Q 010816          382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ  461 (500)
Q Consensus       382 g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~  461 (500)
                      |++|.||++.|++..-+-+|  ||+++                           +|+++++..++++.|+++++.|-.++
T Consensus       165 GtvRtydiR~G~l~sDy~g~--pit~v---------------------------s~s~d~nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  165 GTVRTYDIRKGTLSSDYFGH--PITSV---------------------------SFSKDGNCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             CcEEEEEeecceeehhhcCC--cceeE---------------------------EecCCCCEEEEeeccceeeecccchh
Confidence            99999999999876554443  45555                           56999999999999999999999999


Q ss_pred             cccccccCcccCEE--EEEEcCCCCEEEEEeCCCcEEEec
Q 010816          462 KLKQDLPGHADEVF--AVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       462 ~~~~~~~~h~~~V~--~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ++++...||...=+  ..+++.....+++||+||.|++|+
T Consensus       216 klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wd  255 (307)
T KOG0316|consen  216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWD  255 (307)
T ss_pred             HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEE
Confidence            99999999987655  456777788999999999999997

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.7e-30  Score=218.33  Aligned_cols=285  Identities=22%  Similarity=0.338  Sum_probs=226.8

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCc
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKP  184 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~--d~~i~~wd~~~~~~  184 (500)
                      -.+.|.++.|+++|.+|++++.|.+++|||..++.++..+..+.-.+..+.|......++.++.  |.+||.-++.+.+.
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            4678999999999999999999999999999999999988888889999999888877877776  88999999998887


Q ss_pred             ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCC-eE
Q 010816          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC-TI  263 (500)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg-~i  263 (500)
                      ++ .+.||...|+++..+|..     ..|+++|-|++||+||++..+|.-.+.-...  ..++|+|+|.+++.+.++ .|
T Consensus        93 lR-YF~GH~~~V~sL~~sP~~-----d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~I  164 (311)
T KOG1446|consen   93 LR-YFPGHKKRVNSLSVSPKD-----DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELI  164 (311)
T ss_pred             EE-EcCCCCceEEEEEecCCC-----CeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeE
Confidence            65 589999999999988854     5899999999999999998887665543333  347899999866655444 99


Q ss_pred             EEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEE
Q 010816          264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (500)
Q Consensus       264 ~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~  343 (500)
                      ++||++.-.        ..+...                                             +.          
T Consensus       165 kLyD~Rs~d--------kgPF~t---------------------------------------------f~----------  181 (311)
T KOG1446|consen  165 KLYDLRSFD--------KGPFTT---------------------------------------------FS----------  181 (311)
T ss_pred             EEEEecccC--------CCCcee---------------------------------------------Ec----------
Confidence            999986411        000000                                             00          


Q ss_pred             EcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY  423 (500)
Q Consensus       344 wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  423 (500)
                        +.         .+-....+.+.|||||+++..+...+.+++.|.-+|..+.++.++...-.-                
T Consensus       182 --i~---------~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~----------------  234 (311)
T KOG1446|consen  182 --IT---------DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL----------------  234 (311)
T ss_pred             --cC---------CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc----------------
Confidence              00         011234678999999999999999999999999999988888776543200                


Q ss_pred             eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC-cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                              .....|+||++++++|+.||+|++|+++++..+..+.+ +...+.++.|+|.  +..-+++|..+-+|.
T Consensus       235 --------~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~--~~mf~sa~s~l~fw~  301 (311)
T KOG1446|consen  235 --------PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR--YAMFVSASSNLVFWL  301 (311)
T ss_pred             --------ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc--eeeeeecCceEEEEe
Confidence                    01125799999999999999999999999999988888 7889999999995  555556666788884

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-32  Score=223.70  Aligned_cols=242  Identities=28%  Similarity=0.526  Sum_probs=207.0

Q ss_pred             cccEEEEEEcCCC-CeEEEEeCCCcEEEEeCC-CCceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCc
Q 010816          108 TEAVLSVAFSPDG-RQLASGSGDTTVRLWDLN-TQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKP  184 (500)
Q Consensus       108 ~~~V~~~~~sp~~-~~lat~~~d~~i~iwd~~-~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~~~~~  184 (500)
                      .+.+..++|+++. +.++++++||+++|||.. ...|+..++.|.+.|.++.|++. ...++++|.|++|++|+..-++.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            6789999999974 678899999999999964 34577888999999999999984 56788889999999999987665


Q ss_pred             ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC--CCeEEEEeCCCe
Q 010816          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG--DGVIYTGSQDCT  262 (500)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~t~~~dg~  262 (500)
                      +. ++.+|+..|.+..|+|...    ..|+++|.|+++++||++..-....+..|...+.|+.|+.  +..++||+.|+.
T Consensus       140 v~-Tf~gh~~~Iy~a~~sp~~~----nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~  214 (311)
T KOG0277|consen  140 VQ-TFNGHNSCIYQAAFSPHIP----NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL  214 (311)
T ss_pred             eE-eecCCccEEEEEecCCCCC----CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce
Confidence            54 5889999999999999654    4899999999999999986544445889999999999985  457999999999


Q ss_pred             EEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816          263 IKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (500)
Q Consensus       263 i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v  341 (500)
                      ||.||++.-+ .+.++.+|+-.|+.+.++|..                                   ...+++++.|.++
T Consensus       215 vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~-----------------------------------~~lLaSasYDmT~  259 (311)
T KOG0277|consen  215 VRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH-----------------------------------ASLLASASYDMTV  259 (311)
T ss_pred             EEEEehhhccccceeecCCceEEEEEecCcch-----------------------------------hhHhhhccccceE
Confidence            9999998653 467789999999999988742                                   3468999999999


Q ss_pred             EEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeC
Q 010816          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNG  389 (500)
Q Consensus       342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~  389 (500)
                      +|||.............|+.-|..+.||+ ++.++|+.+.|..++||+.
T Consensus       260 riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  260 RIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            99998776666667778999999999998 6789999999999999984

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.2e-30  Score=226.82  Aligned_cols=276  Identities=28%  Similarity=0.468  Sum_probs=225.4

Q ss_pred             hhHhhcCCCeeeEEEEEEeecceEeEE-ecccccccccCCcccEEEEEEcCCC---CeEEEEeCCCcEEEEeCCCCcee-
Q 010816           69 SYLEKHKVSVEKVLSIVYQPQAVFRIR-PVNRCSATIAGHTEAVLSVAFSPDG---RQLASGSGDTTVRLWDLNTQTPM-  143 (500)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gh~~~V~~~~~sp~~---~~lat~~~d~~i~iwd~~~~~~~-  143 (500)
                      .|+..-+...+-++.-.|..  ..+++ ..+++..++.||+++|.++++.-..   ..+++++.|.++++|.++.+... 
T Consensus       106 DWVSsv~~~~~~IltgsYDg--~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~  183 (423)
T KOG0313|consen  106 DWVSSVKGASKWILTGSYDG--TSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV  183 (423)
T ss_pred             hhhhhhcccCceEEEeecCC--eeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh
Confidence            34455555566677777754  34555 4567888999999999988875433   36999999999999998766433 


Q ss_pred             ---EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC------------------------cccccccCcccce
Q 010816          144 ---FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK------------------------PSGNPLSGHKKWI  196 (500)
Q Consensus       144 ---~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~------------------------~~~~~~~~~~~~v  196 (500)
                         ..+.||.+.|.+|+..++|..+++||.|.+|++|+..+..                        .....+.||...|
T Consensus       184 ~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~V  263 (423)
T KOG0313|consen  184 KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPV  263 (423)
T ss_pred             hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccce
Confidence               3456999999999999999999999999999999932110                        0112468999999


Q ss_pred             EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCe---
Q 010816          197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK---  272 (500)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~---  272 (500)
                      .++.|.+      ...+.++|+|.+|+.||+.++.+...+.+ +....|+.+++.. +|++|+.|..||+||.+++.   
T Consensus       264 s~V~w~d------~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~  336 (423)
T KOG0313|consen  264 SSVVWSD------ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV  336 (423)
T ss_pred             eeEEEcC------CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence            9999986      24789999999999999999998877654 4678899988754 68899999999999998763   


Q ss_pred             eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC
Q 010816          273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP  352 (500)
Q Consensus       273 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~  352 (500)
                      ..+++.+|..+|.++.++|..                                   ...|++|+.|+++++||.+....+
T Consensus       337 v~~s~~gH~nwVssvkwsp~~-----------------------------------~~~~~S~S~D~t~klWDvRS~k~p  381 (423)
T KOG0313|consen  337 VSQSLIGHKNWVSSVKWSPTN-----------------------------------EFQLVSGSYDNTVKLWDVRSTKAP  381 (423)
T ss_pred             eEEeeecchhhhhheecCCCC-----------------------------------ceEEEEEecCCeEEEEEeccCCCc
Confidence            356789999999999998752                                   347999999999999999999889


Q ss_pred             ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816          353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (500)
Q Consensus       353 ~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~  389 (500)
                      ...+.+|.+.|.++.|+ ++.+|++|+.|.+|+++..
T Consensus       382 lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  382 LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             ceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence            99999999999999997 5678999999999999864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.8e-30  Score=212.72  Aligned_cols=242  Identities=29%  Similarity=0.578  Sum_probs=200.5

Q ss_pred             eEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc
Q 010816          143 MFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (500)
Q Consensus       143 ~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~  221 (500)
                      +..+++|.+.+..++|+|- |..||||+.|+.|++|+...+..                |                    
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----------------~--------------------   50 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----------------W--------------------   50 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc----------------E--------------------
Confidence            4567789999999999997 77899999999999998754221                0                    


Q ss_pred             EEEEECCCCeEEEEe-cCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCC--eeEEEeecCCceEEEEEecCcceeee
Q 010816          222 ARIWDVSLRKCVICL-SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRT  297 (500)
Q Consensus       222 v~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~  297 (500)
                               .|...+ .+|+..|++++|+|.| +|++|+.|.++.||.-..+  +++..+++|...|.+++++++     
T Consensus        51 ---------~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s-----  116 (312)
T KOG0645|consen   51 ---------TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS-----  116 (312)
T ss_pred             ---------EEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC-----
Confidence                     011111 3688999999999977 5888999999999987665  567889999999999999875     


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC--CCCceeeecccCcEEEEEECCCCCEE
Q 010816          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS--KQPKTRMTGHQQLVNHVYFSPDGQWV  375 (500)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~--~~~~~~~~~h~~~v~~l~~sp~g~~l  375 (500)
                                                     +.+|++++.|..|-+|.....  ......+.+|...|..+.|+|...+|
T Consensus       117 -------------------------------G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL  165 (312)
T KOG0645|consen  117 -------------------------------GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL  165 (312)
T ss_pred             -------------------------------CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence                                           468999999999999987633  23456789999999999999999999


Q ss_pred             EEEeCCCcEEEEeCC---CCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCc
Q 010816          376 ASASFDKSIKLWNGT---TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST  452 (500)
Q Consensus       376 asgs~Dg~i~lwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~  452 (500)
                      +++|+|.+|++|+-.   ..+++.++.+|++.|.++                           +|.+.|..|++++.|++
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~---------------------------~F~~~G~rl~s~sdD~t  218 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSL---------------------------AFDNIGSRLVSCSDDGT  218 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEE---------------------------EecCCCceEEEecCCcc
Confidence            999999999999866   346889999999999888                           55899999999999999


Q ss_pred             EEEEECCCccccccccC-cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          453 LKVWDIRTQKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       453 v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |+||...+     .+++ |.++++.+.|.  ...|+|++.|+.|+++.
T Consensus       219 v~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~  259 (312)
T KOG0645|consen  219 VSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFK  259 (312)
T ss_pred             eEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence            99997542     2333 78899999998  45899999999999985

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4e-32  Score=234.66  Aligned_cols=285  Identities=22%  Similarity=0.397  Sum_probs=221.7

Q ss_pred             ccccCCcccEEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          102 ATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~-~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      ..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+.+..+...+..|.+.|..+++..  ..+++++.|++|+.|.++
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence            4578999999999999987 7899999999999999999999999999999999999976  678999999999999865


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--eEEEEe
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGS  258 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~t~~  258 (500)
                      -. ... .+.+ +..+.++.     .......|++||.  .|.|||.+....+..+.-....|.++.|+|..  .|++++
T Consensus       138 ~~-p~~-tilg-~s~~~gId-----h~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~  207 (433)
T KOG0268|consen  138 GP-PLH-TILG-KSVYLGID-----HHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA  207 (433)
T ss_pred             CC-cce-eeec-cccccccc-----cccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence            32 111 1111 12222332     1122346888876  48999998888888887777889999999854  688888


Q ss_pred             CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      .|++|.|||++++..++.+... -.-+.++|+|.                                    ...|++|+.|
T Consensus       208 sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPe------------------------------------afnF~~a~ED  250 (433)
T KOG0268|consen  208 SDRSIVLYDLRQASPLKKVILT-MRTNTICWNPE------------------------------------AFNFVAANED  250 (433)
T ss_pred             cCCceEEEecccCCccceeeee-ccccceecCcc------------------------------------ccceeecccc
Confidence            9999999999998877654211 11234445442                                    2358899999


Q ss_pred             CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC-CcccEEEEEeeeeeeec
Q 010816          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQIRFELIYCFR  417 (500)
Q Consensus       339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~  417 (500)
                      -.++.+|++.-..+.....+|...|.+|+|||.|+-+++||.|.+||||....+..-.++-. ....|.++         
T Consensus       251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~V---------  321 (433)
T KOG0268|consen  251 HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCV---------  321 (433)
T ss_pred             ccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEE---------
Confidence            99999999988888888899999999999999999999999999999999876643322211 11223333         


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK  462 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~  462 (500)
                                        .||-|.+++++||.|+.|++|.....+
T Consensus       322 ------------------k~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  322 ------------------KYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             ------------------EEeccccEEEecCCCcceeeeecchhh
Confidence                              679999999999999999999876533

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=5.7e-29  Score=223.92  Aligned_cols=391  Identities=19%  Similarity=0.305  Sum_probs=249.0

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCC--------cEEEEeCCCCceeEEecCCCCCEEEEEEcCC--CCEEEEE-
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDT--------TVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD--GKHLVSG-  168 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~--------~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~-  168 (500)
                      ..+.+.||++.|.|++.+||.-++|+|..-|        .++|||..+-..+..+......|.|++|++-  |.+|+.. 
T Consensus        96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD  175 (626)
T KOG2106|consen   96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD  175 (626)
T ss_pred             hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence            3445689999999999999999999886555        5999998776666667677889999999973  4555543 


Q ss_pred             -eCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE---ecCc-cccE
Q 010816          169 -SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC---LSGH-TLAV  243 (500)
Q Consensus       169 -~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~---~~~h-~~~v  243 (500)
                       +.+..+.+||+..+.... .....+..|....|+|...+    .+++++. +.+..|+.+.+.....   +.++ ...|
T Consensus       176 ~s~~h~lSVWdWqk~~~~~-~vk~sne~v~~a~FHPtd~n----liit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~V  249 (626)
T KOG2106|consen  176 DSNPHMLSVWDWQKKAKLG-PVKTSNEVVFLATFHPTDPN----LIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFV  249 (626)
T ss_pred             CCCccccchhhchhhhccC-cceeccceEEEEEeccCCCc----EEEEeCC-ceEEEEEccCCceEEEeeccccccceEE
Confidence             345679999998775443 34555677888999997543    5666665 8899999987755432   3333 3679


Q ss_pred             EEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCC----HHHH-HHHHH
Q 010816          244 TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS----PEEM-KKAAL  318 (500)
Q Consensus       244 ~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~  318 (500)
                      .|+.|.+++.++||..+|.|.||+..+.+..+....|...|.+++...++.+.+|..|.....+..    ..+. .....
T Consensus       250 l~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~  329 (626)
T KOG2106|consen  250 LCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQF  329 (626)
T ss_pred             EEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhc
Confidence            999999999999999999999999988888887779999999999988887777766543322210    0000 00000


Q ss_pred             HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 010816          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~  398 (500)
                      .....+....++ ++.|...+.|..=.+.  ........+|.+....++.+|+.+.+++++.|+.+++|+-...+.-..+
T Consensus       330 G~iRtv~e~~~d-i~vGTtrN~iL~Gt~~--~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~  406 (626)
T KOG2106|consen  330 GPIRTVAEGKGD-ILVGTTRNFILQGTLE--NGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKII  406 (626)
T ss_pred             CCeeEEecCCCc-EEEeeccceEEEeeec--CCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEe
Confidence            011111112222 3333333333221111  1122334556666666666666666666666666666662221111111


Q ss_pred             -------eCCcccEEEEEeeeeeeecCC---CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc-cccc
Q 010816          399 -------RGHVGPVYQIRFELIYCFRYP---SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDL  467 (500)
Q Consensus       399 -------~~h~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~  467 (500)
                             .-|...+..+.+....-+...   ............+++++|+|+|.+||.|+.|+.|+||.+..... ....
T Consensus       407 ~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~  486 (626)
T KOG2106|consen  407 EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV  486 (626)
T ss_pred             cCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence                   112222222211100000000   00000111123456668899999999999999999998865332 2211


Q ss_pred             -cCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          468 -PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       468 -~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                       .-|...|+.++||+|+++|.+-+.|-.|..|.
T Consensus       487 ~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  487 GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             eeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence             11337899999999999999999999999994

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-30  Score=246.96  Aligned_cols=310  Identities=21%  Similarity=0.379  Sum_probs=243.8

Q ss_pred             ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (500)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w  177 (500)
                      +.+...+.+|.++|..++|||+..++++|+.|..|+||+..+.++++++.||-+.|..+.|++.-..++|+|.|.+|+||
T Consensus        41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIW  120 (1202)
T KOG0292|consen   41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIW  120 (1202)
T ss_pred             hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEE
Confidence            34667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC--------C-------------------
Q 010816          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL--------R-------------------  230 (500)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~--------~-------------------  230 (500)
                      ++.+++++. .+.||+..|-+.+|+|..     ..++++|-|.+||+||+..        +                   
T Consensus       121 Nwqsr~~ia-vltGHnHYVMcAqFhptE-----DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~  194 (1202)
T KOG0292|consen  121 NWQSRKCIA-VLTGHNHYVMCAQFHPTE-----DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQT  194 (1202)
T ss_pred             eccCCceEE-EEecCceEEEeeccCCcc-----ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCc
Confidence            999998775 589999999999998843     5799999999999999741        1                   


Q ss_pred             e--EEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEEeCCCCe--eEEEeecCCceEEEEEecCcceeeeccccCCCC
Q 010816          231 K--CVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (500)
Q Consensus       231 ~--~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (500)
                      .  .-..+.||...|.-++|.|. ..|++|+.|+.|++|.....+  .+.+..+|...|.++-++|.             
T Consensus       195 DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~-------------  261 (1202)
T KOG0292|consen  195 DAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH-------------  261 (1202)
T ss_pred             CeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCc-------------
Confidence            0  12346799999999999985 478999999999999876543  35567889999999988874             


Q ss_pred             CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEE
Q 010816          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK  385 (500)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~  385 (500)
                                             .+.+++.|.|+++++||+... .....+....+..+.++.+|..+++|+| .|+-+.
T Consensus       262 -----------------------q~lIlSnsEDksirVwDm~kR-t~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~  316 (1202)
T KOG0292|consen  262 -----------------------QDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMI  316 (1202)
T ss_pred             -----------------------cceeEecCCCccEEEEecccc-cceeeeeccCCeEEEEEecCCcceeeee-cCCceE
Confidence                                   467899999999999998643 3344555556789999999999988876 666667


Q ss_pred             EEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc
Q 010816          386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ  465 (500)
Q Consensus       386 lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~  465 (500)
                      +|.++.-+          +.+++                               ++..|.-.- |..|+-+|+++.+-..
T Consensus       317 VFkleREr----------pa~~v-------------------------------~~n~LfYvk-d~~i~~~d~~t~~d~~  354 (1202)
T KOG0292|consen  317 VFKLERER----------PAYAV-------------------------------NGNGLFYVK-DRFIRSYDLRTQKDTA  354 (1202)
T ss_pred             EEEEcccC----------ceEEE-------------------------------cCCEEEEEc-cceEEeeeccccccce
Confidence            77654322          22222                               233333333 8889999998854322


Q ss_pred             --cccCc---ccCEEEEEEcCCCCEE-EEEeCCC
Q 010816          466 --DLPGH---ADEVFAVDWSPDGEKV-ASGGKDR  493 (500)
Q Consensus       466 --~~~~h---~~~V~~l~~s~dg~~l-~s~~~D~  493 (500)
                        .++..   ..++.+++++|....+ ++...|+
T Consensus       355 v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n  388 (1202)
T KOG0292|consen  355 VASLRRPGTLWQPPRSLSYNPAENAVLICSNLDN  388 (1202)
T ss_pred             eEeccCCCcccCCcceeeeccccCeEEEEeccCC
Confidence              22222   3577889999976544 4434443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=9.9e-31  Score=243.90  Aligned_cols=278  Identities=27%  Similarity=0.456  Sum_probs=232.1

Q ss_pred             eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc-ccccCcccceEE-EEeeeeecCCCCceEEEEeCCC
Q 010816          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITG-ISWEPVHLNAPCRRFVSASKDG  220 (500)
Q Consensus       143 ~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~v~~-~~~~~~~~~~~~~~~~s~s~dg  220 (500)
                      ...+.+|...|..+++.+.. .++++|.||++++|+-..++... ..+.+|...+.. +.+.+    .+..++++|+.|.
T Consensus         7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e----~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE----SDKGRLVVGGMDT   81 (745)
T ss_pred             EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceecc----ccCcceEeecccc
Confidence            45678999999999887654 79999999999999986655444 456677777765 66543    3446799999999


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccc
Q 010816          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (500)
                      ++.+|.......+..+.||...|.|++-..++.+++||+|.++++|-  .+++...+.+|...|.+++.-++        
T Consensus        82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e--------  151 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPE--------  151 (745)
T ss_pred             eEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEec--chhhhcccCCcchheeeeeecCC--------
Confidence            99999999999999999999999999988888899999999999995  45677779999999998876553        


Q ss_pred             cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC
Q 010816          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF  380 (500)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~  380 (500)
                                                   +.+++||.|.+|++|.-   ......+.+|.+.|+.+++-+++. |++++.
T Consensus       152 -----------------------------~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~-flScsN  198 (745)
T KOG0301|consen  152 -----------------------------NTYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN  198 (745)
T ss_pred             -----------------------------CcEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCC-eEeecC
Confidence                                         36899999999999974   345567889999999999988754 778999


Q ss_pred             CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       381 Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                      ||.|++|++ +|+++..+.||+.-+|++..                           .++++.+++++.|++++||+.. 
T Consensus       199 Dg~Ir~w~~-~ge~l~~~~ghtn~vYsis~---------------------------~~~~~~Ivs~gEDrtlriW~~~-  249 (745)
T KOG0301|consen  199 DGSIRLWDL-DGEVLLEMHGHTNFVYSISM---------------------------ALSDGLIVSTGEDRTLRIWKKD-  249 (745)
T ss_pred             CceEEEEec-cCceeeeeeccceEEEEEEe---------------------------cCCCCeEEEecCCceEEEeecC-
Confidence            999999999 89999999999999998842                           5788899999999999999976 


Q ss_pred             ccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          461 QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       461 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                       ++.+.+.--.-.||++.+-++|. |++|+.||.||||.
T Consensus       250 -e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT  286 (745)
T KOG0301|consen  250 -ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT  286 (745)
T ss_pred             -ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence             55554443344799998887775 79999999999995

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=9.1e-31  Score=221.79  Aligned_cols=298  Identities=22%  Similarity=0.374  Sum_probs=228.3

Q ss_pred             cccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----------------C-ceeEEecCCCCCEEEEEE
Q 010816           97 VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-----------------Q-TPMFKCTGHKNWVLCIAW  158 (500)
Q Consensus        97 ~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-----------------~-~~~~~~~~h~~~v~~v~~  158 (500)
                      .......+..|++++.+-+|+|||.++|||+.|.+|+|.|++.                 + ..+.++-.|...|.++.|
T Consensus       101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F  180 (430)
T KOG0640|consen  101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF  180 (430)
T ss_pred             cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence            3445567789999999999999999999999999999999861                 1 224566789999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-
Q 010816          159 SADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-  236 (500)
Q Consensus       159 s~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-  236 (500)
                      +|....|++|+.|++|+++|.......+ ........+|.+++|+|     .+..++.|..-.++++||+++.+|...- 
T Consensus       181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-----sGefllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-----SGEFLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-----CCceEEEecCCCceeEEeccceeEeeecC
Confidence            9999999999999999999986532111 01122346788999887     3457777888889999999999886543 


Q ss_pred             --cCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHH
Q 010816          237 --SGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (500)
Q Consensus       237 --~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (500)
                        .+|+..|+++.+++.+. .++|+.||.|++||-..++++.++.                                   
T Consensus       256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-----------------------------------  300 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG-----------------------------------  300 (430)
T ss_pred             cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH-----------------------------------
Confidence              37899999999999875 5689999999999976666554331                                   


Q ss_pred             HHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc-cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816          314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (500)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~  392 (500)
                                                                 ..| ...|.+..|..+|+++.+.+.|..+++|.+.+|
T Consensus       301 -------------------------------------------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  301 -------------------------------------------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             -------------------------------------------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence                                                       012 134778889999999999999999999999999


Q ss_pred             ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECCCccccccc-cCc
Q 010816          393 KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDL-PGH  470 (500)
Q Consensus       393 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~~~-~~h  470 (500)
                      +++..+.|....-... +.                     +...|+....+++.-. ..+.+.-||.++...+..+ .||
T Consensus       338 R~l~~YtGAg~tgrq~-~r---------------------tqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgH  395 (430)
T KOG0640|consen  338 RMLKEYTGAGTTGRQK-HR---------------------TQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGH  395 (430)
T ss_pred             ceEEEEecCCcccchh-hh---------------------hhhhhcCccceEEccccccCceeeccccchhhhhhcccCC
Confidence            9999887753211110 00                     0012344444544432 3467888999886654433 479


Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          471 ADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       471 ~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ++.+..+.-||.+..+.+||.|-++|+|-
T Consensus       396 n~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  396 NGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             CCCceEEEeCCCCCceeeecccceeeeee
Confidence            99999999999999999999999999994

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3e-29  Score=203.42  Aligned_cols=293  Identities=25%  Similarity=0.360  Sum_probs=229.0

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC------------CceeE---EecCCCCCEEEEEEcCCCCEEEEEeCC
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT------------QTPMF---KCTGHKNWVLCIAWSADGKHLVSGSKA  171 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~------------~~~~~---~~~~h~~~v~~v~~s~~~~~l~s~~~d  171 (500)
                      .+..|.+++|+|.|.+.|.|+...+.+|.....            ..+..   .-+.|.+.|.|.+|+|+|.+|++|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            466899999999999999999999999985321            12222   235688999999999999999999999


Q ss_pred             CeEEEEeCCCCCc--cc--ccccCcccceEEEEeeeeecCCCCceEEEEe-CCCcEEEEECCCCeEEEEecCccccEEEE
Q 010816          172 GELQCWDPQTGKP--SG--NPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCV  246 (500)
Q Consensus       172 ~~i~~wd~~~~~~--~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~~~~~~~h~~~v~~~  246 (500)
                      ++|++...+...+  ..  ..+.-|.+.|..++|... .+..+..+++++ .|..|++-|...++....+.||++-|.++
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~-~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal  189 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD-PESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL  189 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecC-CCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence            9999976543221  11  135668888999988643 233445566554 46677777889999999999999999887


Q ss_pred             EeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816          247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (500)
Q Consensus       247 ~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (500)
                      .--.+-.+++|++|.+||+||++-..++.++....                                             
T Consensus       190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~---------------------------------------------  224 (350)
T KOG0641|consen  190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF---------------------------------------------  224 (350)
T ss_pred             EEecCcEEEccCCCceEEEEeeeccceeeeccCcc---------------------------------------------
Confidence            43234578899999999999998655544331100                                             


Q ss_pred             CCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (500)
Q Consensus       327 ~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~  406 (500)
                                .|+          .       -....|.+++..|.|++|++|-.|....+||++.++.+..|--|...|.
T Consensus       225 ----------~~~----------g-------lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir  277 (350)
T KOG0641|consen  225 ----------HDG----------G-------LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIR  277 (350)
T ss_pred             ----------cCC----------C-------cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcccee
Confidence                      000          0       0124588999999999999999999999999999999999999999999


Q ss_pred             EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc----ccccccCcccCEEEEEEcCC
Q 010816          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK----LKQDLPGHADEVFAVDWSPD  482 (500)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~----~~~~~~~h~~~V~~l~~s~d  482 (500)
                      +++|                           ||.-.++++++.|..|++-|++..-    .+-....|++++..+.|+|.
T Consensus       278 ~vrf---------------------------sp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~  330 (350)
T KOG0641|consen  278 CVRF---------------------------SPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ  330 (350)
T ss_pred             EEEe---------------------------CCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence            9965                           8999999999999999999987532    12344569999999999999


Q ss_pred             CCEEEEEeCCCcEEEec
Q 010816          483 GEKVASGGKDRVLKLWM  499 (500)
Q Consensus       483 g~~l~s~~~D~~v~iW~  499 (500)
                      .--+++.+.|+++.+|.
T Consensus       331 d~sfisssadkt~tlwa  347 (350)
T KOG0641|consen  331 DFSFISSSADKTATLWA  347 (350)
T ss_pred             cceeeeccCcceEEEec
Confidence            99999999999999995

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=6e-31  Score=251.60  Aligned_cols=254  Identities=27%  Similarity=0.462  Sum_probs=200.1

Q ss_pred             cccc-CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----------------------------------------
Q 010816          102 ATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-----------------------------------------  139 (500)
Q Consensus       102 ~~~~-gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-----------------------------------------  139 (500)
                      +.+. +|.+.|+++.||+||+|||+||.|+.|+||.+..                                         
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            4455 8999999999999999999999999999997633                                         


Q ss_pred             -------------------CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEE
Q 010816          140 -------------------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS  200 (500)
Q Consensus       140 -------------------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~  200 (500)
                                         .+|+..+.||.+.|..++|+.++ +|+|+|+|++||||++....++.  ...|...|++++
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~--~F~HndfVTcVa  416 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK--VFSHNDFVTCVA  416 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee--EEecCCeeEEEE
Confidence                               01334567999999999999764 89999999999999998777664  457999999999


Q ss_pred             eeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeec
Q 010816          201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG  279 (500)
Q Consensus       201 ~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~  279 (500)
                      |+|.+    .++|++|+-|+.||||++...+.+.-..- ..-|++++|.|||. .+.|+.+|.+++|+....+.......
T Consensus       417 FnPvD----DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  417 FNPVD----DRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             ecccC----CCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence            99964    46899999999999999988776654433 36799999999985 66799999999999876554433211


Q ss_pred             CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc
Q 010816          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (500)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h  359 (500)
                                                                                    .+   ...    .+ ..|
T Consensus       492 --------------------------------------------------------------~~---~~~----Kk-~~~  501 (712)
T KOG0283|consen  492 --------------------------------------------------------------RL---HNK----KK-KQG  501 (712)
T ss_pred             --------------------------------------------------------------ee---ccC----cc-ccC
Confidence                                                                          00   000    11 123


Q ss_pred             cCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816          360 QQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS  438 (500)
Q Consensus       360 ~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  438 (500)
                      . .|+.+.|.|.. .-+++.+.|..|||||.++..++..|+|+...-.++.                         .+|+
T Consensus       502 ~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~-------------------------Asfs  555 (712)
T KOG0283|consen  502 K-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQIS-------------------------ASFS  555 (712)
T ss_pred             c-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCccee-------------------------eeEc
Confidence            3 69999998743 4566678999999999999999888888654322221                         1578


Q ss_pred             CCCCEEEEEECCCcEEEEECC
Q 010816          439 ADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       439 ~~~~~l~s~s~d~~v~iwd~~  459 (500)
                      .||+++++|+.|..|+||+..
T Consensus       556 ~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  556 SDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             cCCCEEEEeecCceEEEEeCC
Confidence            899999999999999999973

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.98  E-value=6.3e-30  Score=250.75  Aligned_cols=314  Identities=25%  Similarity=0.398  Sum_probs=236.7

Q ss_pred             CcccEEEEEEcCCCCeEEEEe--CCCcEEEEeCCC------------CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 010816          107 HTEAVLSVAFSPDGRQLASGS--GDTTVRLWDLNT------------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG  172 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~--~d~~i~iwd~~~------------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~  172 (500)
                      +...|.+++.+|||..+|||+  .|+.++||+.+.            .+.+.....|.+.|.|+.|+|||++||+||+|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            345799999999999999999  899999998642            234556678999999999999999999999999


Q ss_pred             eEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC
Q 010816          173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG  252 (500)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  252 (500)
                      .|.+|+.... ... .                       .|-+.+.-.     +++.-+++..+.+|...|..+.|+|++
T Consensus        92 ~v~iW~~~~~-~~~-~-----------------------~fgs~g~~~-----~vE~wk~~~~l~~H~~DV~Dv~Wsp~~  141 (942)
T KOG0973|consen   92 LVMIWERAEI-GSG-T-----------------------VFGSTGGAK-----NVESWKVVSILRGHDSDVLDVNWSPDD  141 (942)
T ss_pred             eEEEeeeccc-CCc-c-----------------------ccccccccc-----ccceeeEEEEEecCCCccceeccCCCc
Confidence            9999987531 000 0                       011111111     223446777889999999999999977


Q ss_pred             -eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816          253 -VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (500)
Q Consensus       253 -~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (500)
                       ++++++.|++|.+||.++.+.++.+++|...|..+.+.|.                                    +.+
T Consensus       142 ~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~------------------------------------Gky  185 (942)
T KOG0973|consen  142 SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI------------------------------------GKY  185 (942)
T ss_pred             cEEEEecccceEEEEccccceeeeeeecccccccceEECCc------------------------------------cCe
Confidence             5889999999999999999999999999999999998875                                    457


Q ss_pred             EEEeeCCCeEEEEcCCCCCCCceeeecc------cCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCCCceEEEEeCC
Q 010816          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGH------QQLVNHVYFSPDGQWVASASF----DKSIKLWNGTTGKFVAVFRGH  401 (500)
Q Consensus       332 ~~s~s~d~~v~~wd~~~~~~~~~~~~~h------~~~v~~l~~sp~g~~lasgs~----Dg~i~lwd~~~~~~~~~~~~h  401 (500)
                      |++-++|++|++|+... ....+.+.++      ...+..++|||||.+|++.-.    -.++.|.+-.+.+.-..|-||
T Consensus       186 ~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH  264 (942)
T KOG0973|consen  186 FASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH  264 (942)
T ss_pred             eeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC
Confidence            99999999999998543 1222222222      234788999999999998632    346888888888877889999


Q ss_pred             cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC--CEEEEEECCCcEEEEECCCccccccccC-cccCEEEEE
Q 010816          402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS--RLLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVD  478 (500)
Q Consensus       402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~V~~l~  478 (500)
                      .+++..++|.+..--+...      +..      .-.++.  ..+|+||.|++|-||.....+.+..... ....|.+++
T Consensus       265 ~~p~evvrFnP~lfe~~~~------ng~------~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~Dms  332 (942)
T KOG0973|consen  265 SAPVEVVRFNPKLFERNNK------NGT------STQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMS  332 (942)
T ss_pred             CCceEEEEeChHHhccccc------cCC------ccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeee
Confidence            9999999885421111000      000      001111  2578999999999999877776543321 245799999


Q ss_pred             EcCCCCEEEEEeCCCcEEEec
Q 010816          479 WSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       479 ~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |+|||..|..+|-||+|.+.+
T Consensus       333 WspdG~~LfacS~DGtV~~i~  353 (942)
T KOG0973|consen  333 WSPDGFSLFACSLDGTVALIH  353 (942)
T ss_pred             EcCCCCeEEEEecCCeEEEEE
Confidence            999999999999999998764

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-29  Score=237.05  Aligned_cols=270  Identities=28%  Similarity=0.550  Sum_probs=218.5

Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcc
Q 010816          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK  193 (500)
Q Consensus       114 ~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  193 (500)
                      ++|+ ..+.||.|. ...|.+|+..++.....+..++..|+++.|+++|.+|+.|..+|.|.|||..+.+.......+|.
T Consensus       183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~  260 (484)
T KOG0305|consen  183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA  260 (484)
T ss_pred             hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence            4555 344566654 45799999988876555555589999999999999999999999999999988776654444499


Q ss_pred             cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-ecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCC
Q 010816          194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG  271 (500)
Q Consensus       194 ~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~  271 (500)
                      ..|-+++|+.       ..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+ ++++|+.|+.+.|||... 
T Consensus       261 ~rvg~laW~~-------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~-  332 (484)
T KOG0305|consen  261 SRVGSLAWNS-------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS-  332 (484)
T ss_pred             ceeEEEeccC-------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC-
Confidence            9999999974       4788999999999999998776555 78899999999999886 577888888888887522 


Q ss_pred             eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC
Q 010816          272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ  351 (500)
Q Consensus       272 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~  351 (500)
                                                                                                    ..
T Consensus       333 ------------------------------------------------------------------------------~~  334 (484)
T KOG0305|consen  333 ------------------------------------------------------------------------------PE  334 (484)
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          12


Q ss_pred             CceeeecccCcEEEEEECC-CCCEEEEEe--CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeec
Q 010816          352 PKTRMTGHQQLVNHVYFSP-DGQWVASAS--FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM  428 (500)
Q Consensus       352 ~~~~~~~h~~~v~~l~~sp-~g~~lasgs--~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  428 (500)
                      +...+..|...|..++|+| ...+||+|+  .|+.|++||..+|+.+.....                            
T Consensus       335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt----------------------------  386 (484)
T KOG0305|consen  335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT----------------------------  386 (484)
T ss_pred             ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc----------------------------
Confidence            3345567888899999999 567899874  699999999999887654321                            


Q ss_pred             cccceeeEEcCCCCEEEEE--ECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          429 SCCMSLYSWSADSRLLLSG--SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       429 ~~~~~~~~~s~~~~~l~s~--s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ...++.+.|++..+-|+++  -.++.|.||+..+.+.+..+.||..+|..+++||||..+++|+.|.++++|.
T Consensus       387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence            1223445899998766654  4678999999999999999999999999999999999999999999999996

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.4e-30  Score=228.78  Aligned_cols=281  Identities=24%  Similarity=0.368  Sum_probs=227.6

Q ss_pred             cccEEEEEEcCCCCe-EEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816          108 TEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~-lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~  186 (500)
                      .+.|.+++|+|...+ +|++ ..-.+.||+..+......+......|.++.|-.||++||+|+..|.|+++|..+ +...
T Consensus        26 ~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL  103 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL  103 (487)
T ss_pred             cCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence            467999999997654 4444 345799999887766666777888999999999999999999999999999544 4455


Q ss_pred             ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC--CeEEEEeCCCeEE
Q 010816          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIK  264 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~  264 (500)
                      ..+.+|..++..+.|+|..    ...|++|+.|+.+++||+.+......+.+|+..|.|.+|+|-  ..++|||.||.||
T Consensus       104 R~~~ah~apv~~~~f~~~d----~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr  179 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQD----NTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR  179 (487)
T ss_pred             HHHhhccCceeEEEecccC----CeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence            5688999999999998853    457899999999999999999887789999999999999874  3699999999999


Q ss_pred             EEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEE
Q 010816          265 VWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (500)
Q Consensus       265 lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~  343 (500)
                      +||.+.. ..+.++ .|+.+|..+.+-|.                                    +..+++++ .+.+++
T Consensus       180 l~DtR~~~~~v~el-nhg~pVe~vl~lps------------------------------------gs~iasAg-Gn~vkV  221 (487)
T KOG0310|consen  180 LWDTRSLTSRVVEL-NHGCPVESVLALPS------------------------------------GSLIASAG-GNSVKV  221 (487)
T ss_pred             EEEeccCCceeEEe-cCCCceeeEEEcCC------------------------------------CCEEEEcC-CCeEEE
Confidence            9999876 444444 47888888876553                                    23455544 457999


Q ss_pred             EcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY  423 (500)
Q Consensus       344 wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  423 (500)
                      ||+..+.+....+..|...|+|+++..++..|.+|+.||.|++||+.+-+.+..++ -.++|.++               
T Consensus       222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsi---------------  285 (487)
T KOG0310|consen  222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSI---------------  285 (487)
T ss_pred             EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeE---------------
Confidence            99987777667777799999999999999999999999999999988777766554 23455444               


Q ss_pred             eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816          424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                                  +.+|+++.++.|..||.+-+=+...
T Consensus       286 ------------avs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  286 ------------AVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             ------------EecCCCceEEEecccceeeeehhhc
Confidence                        5689999999999999887665433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4e-30  Score=246.00  Aligned_cols=288  Identities=20%  Similarity=0.356  Sum_probs=204.6

Q ss_pred             ec-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccC---------cccceEEEEeeeeecCCCCceEEE
Q 010816          146 CT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG---------HKKWITGISWEPVHLNAPCRRFVS  215 (500)
Q Consensus       146 ~~-~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~s  215 (500)
                      +. .|.+.|.++.|++||++||+||.|+.|+||.+...+........         .+..+..+.-.+..........-.
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            44 79999999999999999999999999999987542210000000         000000000000000000000011


Q ss_pred             EeCCCcEEEEECC----CCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecC
Q 010816          216 ASKDGDARIWDVS----LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST  291 (500)
Q Consensus       216 ~s~dg~v~iwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~  291 (500)
                      +..... .+.+..    ..+.+..+.||.+.|.++.|+.++.|++++.|.+||||++....+++.+. |...|+|++|+|
T Consensus       342 ~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP  419 (712)
T KOG0283|consen  342 GSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP  419 (712)
T ss_pred             ccCCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence            111112 111211    12455668899999999999999999999999999999999999999886 888999999998


Q ss_pred             cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC
Q 010816          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD  371 (500)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~  371 (500)
                      ..                                   ..+|++||-|+.++||++...+  ......-.+.|++++|.||
T Consensus       420 vD-----------------------------------DryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~Pd  462 (712)
T KOG0283|consen  420 VD-----------------------------------DRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPD  462 (712)
T ss_pred             cC-----------------------------------CCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccC
Confidence            52                                   4679999999999999975432  2223334578999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEEeC--C------cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC-CCC
Q 010816          372 GQWVASASFDKSIKLWNGTTGKFVAVFRG--H------VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSR  442 (500)
Q Consensus       372 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~--h------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~  442 (500)
                      |++.+.|+.+|.+++|+....++...+.-  |      ...|+.++|                           .| +..
T Consensus       463 Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~---------------------------~p~~~~  515 (712)
T KOG0283|consen  463 GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF---------------------------FPGDPD  515 (712)
T ss_pred             CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe---------------------------cCCCCC
Confidence            99999999999999999987776543321  1      114555543                           32 233


Q ss_pred             EEEEEECCCcEEEEECCCccccccccCccc--CEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHAD--EVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       443 ~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~--~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      -+++.+.|..|||||++...++.+++|+..  .-....|+.||++|+++++|..|+||.
T Consensus       516 ~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~  574 (712)
T KOG0283|consen  516 EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK  574 (712)
T ss_pred             eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence            677889999999999999899888888643  345678999999999999999999996

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=2.7e-30  Score=233.02  Aligned_cols=294  Identities=25%  Similarity=0.432  Sum_probs=219.6

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce----eEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP----MFKC-TGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~----~~~~-~~h~~~v~~v~~s~~~~~l~s~~~d~~i  174 (500)
                      +...+++|+..|.++++.|.|.+|++|+.|.+|++||+..-..    ...+ ..-...|.+++|++.|+.|++.+.....
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            4456889999999999999999999999999999999864211    1111 1223469999999999999999989999


Q ss_pred             EEEeCCCCCcc---------c--ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe-EEEEe-----c
Q 010816          175 QCWDPQTGKPS---------G--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICL-----S  237 (500)
Q Consensus       175 ~~wd~~~~~~~---------~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~-~~~~~-----~  237 (500)
                      +|+|..-....         .  ....||...+++..|+|..-    ..|++++.||++||||+...+ .+.++     .
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k----~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK----EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc----cceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence            99996432110         0  13478999999999999643    479999999999999997543 22222     2


Q ss_pred             CccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816          238 GHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (500)
Q Consensus       238 ~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (500)
                      +...+++.++|++++. |++|..||+|.+|+.+... ++               +                         
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~-v~---------------p-------------------------  353 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT-VR---------------P-------------------------  353 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcc-cc---------------c-------------------------
Confidence            3456788899999874 6778899999999864310 00               0                         


Q ss_pred             HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccC--cEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-c
Q 010816          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTG-K  393 (500)
Q Consensus       317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~--~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~-~  393 (500)
                                             .+            ..-..|..  .|+||+||+||++|++=+.|+++++||++.- +
T Consensus       354 -----------------------~~------------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  354 -----------------------VM------------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             -----------------------ce------------EeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence                                   00            01123444  7999999999999999999999999999763 3


Q ss_pred             eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC------CCcEEEEECCCccccccc
Q 010816          394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK------DSTLKVWDIRTQKLKQDL  467 (500)
Q Consensus       394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~------d~~v~iwd~~~~~~~~~~  467 (500)
                      ++.+..+-..+             ++            .+...|||+.+++++|..      .|++.+||..+...++++
T Consensus       399 pL~~~tgL~t~-------------~~------------~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki  453 (641)
T KOG0772|consen  399 PLNVRTGLPTP-------------FP------------GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI  453 (641)
T ss_pred             chhhhcCCCcc-------------CC------------CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence            34333221110             00            112268999999999864      468999999998888877


Q ss_pred             cCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          468 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       468 ~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      .-....|-.+.|+|.=+.|..|+.||+++++
T Consensus       454 ~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  454 DISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             cCCCceEEEEeecchhhheeeecCCCceEEE
Confidence            6667789999999998999999999999986

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.9e-30  Score=212.77  Aligned_cols=252  Identities=23%  Similarity=0.419  Sum_probs=206.8

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---ceeEEecCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~~wd  178 (500)
                      ..+|.+.|..+.....|++|||++.|++|||+.+...   .++..+.||.++|..++|..  -|.+|||+++||+|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            3579999999999999999999999999999998754   45678999999999999976  699999999999999999


Q ss_pred             CCCCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC---eEEEEecCccccEEEEEeCCC---
Q 010816          179 PQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGD---  251 (500)
Q Consensus       179 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~---  251 (500)
                      -++|+-.+ .....|...|++++|.|...   +-.|+.++.||.|.|.+.+..   ........|...|+++.|.|.   
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~waphey---gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEY---GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeeccccccc---ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            88885322 23567999999999998653   457899999999999988654   122345679999999999764   


Q ss_pred             C------------eEEEEeCCCeEEEEeCCCCee--EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHH
Q 010816          252 G------------VIYTGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (500)
Q Consensus       252 ~------------~l~t~~~dg~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (500)
                      |            .|++|+.|+.|+||+...++.  -+.+.+|..+|+.+++.|...                       
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g-----------------------  220 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG-----------------------  220 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccC-----------------------
Confidence            2            489999999999999887743  345889999999999988531                       


Q ss_pred             HHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC--CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (500)
Q Consensus       318 ~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~--~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~  390 (500)
                               .+...++++|+||++.||.......  ....+....+.+..++||+.|+.|+.++.|+.|.+|.-.
T Consensus       221 ---------l~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  221 ---------LPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ---------CCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence                     1345799999999999997653322  223345567889999999999999999999999999643

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.97  E-value=2.6e-29  Score=234.41  Aligned_cols=366  Identities=25%  Similarity=0.432  Sum_probs=256.0

Q ss_pred             cccccCCcccEEEEEEcCCCC---eEEEEeCCCcEEEEeCCCCc-----------------e----eE----------Ee
Q 010816          101 SATIAGHTEAVLSVAFSPDGR---QLASGSGDTTVRLWDLNTQT-----------------P----MF----------KC  146 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~---~lat~~~d~~i~iwd~~~~~-----------------~----~~----------~~  146 (500)
                      ...+.||.+.|.+++|...+.   +||++|.|..||||.+.-+.                 +    +.          .+
T Consensus       184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall  263 (764)
T KOG1063|consen  184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALL  263 (764)
T ss_pred             EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhh
Confidence            356889999999999987654   89999999999999763110                 1    10          12


Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc--c----ccccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS--G----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (500)
Q Consensus       147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~--~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg  220 (500)
                      .||+++|.++.|+|.+..|+++|.|+++.+|.+.+..-+  .    -...+......+..|+|     +...+++-+.-|
T Consensus       264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-----n~~~ii~~g~~G  338 (764)
T KOG1063|consen  264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-----NSNVIIAHGRTG  338 (764)
T ss_pred             cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-----CCCEEEEecccC
Confidence            399999999999999999999999999999987643110  0    01122333455666765     335688889999


Q ss_pred             cEEEEECCC-C--eEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCee--EEE---eecCCceEEEEEecC
Q 010816          221 DARIWDVSL-R--KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL--IRE---LKGHGHWVNSLALST  291 (500)
Q Consensus       221 ~v~iwd~~~-~--~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~--~~~---~~~~~~~v~~~~~~~  291 (500)
                      ..++|.... .  .....+.||...|.+++|+|.| +|++.+.|.+-|+|-.- |+.  -.+   -+.|+..+.++++-+
T Consensus       339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn  417 (764)
T KOG1063|consen  339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVN  417 (764)
T ss_pred             cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehcc
Confidence            999998322 1  2334567999999999999876 68899999999998643 221  122   245888899988777


Q ss_pred             -cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhc-C---------------CCCcEEEEeeCCCeE-EEE-------cC
Q 010816          292 -EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK-G---------------NAPERLVSGSDDFTM-FLW-------EP  346 (500)
Q Consensus       292 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~s~s~d~~v-~~w-------d~  346 (500)
                       +..+..++.....+.+..|..+............ +               .+...+.--..+|.. ..|       .+
T Consensus       418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p  497 (764)
T KOG1063|consen  418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP  497 (764)
T ss_pred             CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence             5555555544444555555444332211111000 0               000000000111110 001       00


Q ss_pred             ------CCC--------CCCceeeecccCcEEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCceEEEEeCCcccEEE
Q 010816          347 ------AVS--------KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-----SIKLWNGTTGKFVAVFRGHVGPVYQ  407 (500)
Q Consensus       347 ------~~~--------~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg-----~i~lwd~~~~~~~~~~~~h~~~v~~  407 (500)
                            ...        -+...++.||...|.+++.+|+|+++|+++...     .|++|+..+...+..+.+|.-.|+.
T Consensus       498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~  577 (764)
T KOG1063|consen  498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR  577 (764)
T ss_pred             hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE
Confidence                  000        012356789999999999999999999998754     5999999998888889999988887


Q ss_pred             EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc----cccccCcccCEEEEEEcCCC
Q 010816          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL----KQDLPGHADEVFAVDWSPDG  483 (500)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~----~~~~~~h~~~V~~l~~s~dg  483 (500)
                      +                           +|||||++|++.|.|.++.+|.......    ....+.|.+.|++++|+||+
T Consensus       578 l---------------------------~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde  630 (764)
T KOG1063|consen  578 L---------------------------AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE  630 (764)
T ss_pred             E---------------------------EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence            7                           5699999999999999999998754322    23367899999999999999


Q ss_pred             CEEEEEeCCCcEEEec
Q 010816          484 EKVASGGKDRVLKLWM  499 (500)
Q Consensus       484 ~~l~s~~~D~~v~iW~  499 (500)
                      +++||+|.|++|++|.
T Consensus       631 ~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  631 KYFATASRDKKVKVWE  646 (764)
T ss_pred             ceeEEecCCceEEEEe
Confidence            9999999999999995

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1e-30  Score=222.85  Aligned_cols=286  Identities=26%  Similarity=0.440  Sum_probs=236.3

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc-------cccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (500)
Q Consensus       148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg  220 (500)
                      +...-+.|..|+|||++|++|+.||.|.+||..+|+..+.       .+.-+...|.++.|+.     +...+++|+.||
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-----DsEMlAsGsqDG  285 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-----DSEMLASGSQDG  285 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-----cHHHhhccCcCC
Confidence            4456688999999999999999999999999999875432       2334677889998865     456799999999


Q ss_pred             cEEEEECCCCeEEEEec-CccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeec
Q 010816          221 DARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG  298 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  298 (500)
                      .|++|.+++++|+..|. +|+..|+|+.|+.|+ .+++++.|.++|+--+..|++++++++|...|+...+.++      
T Consensus       286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d------  359 (508)
T KOG0275|consen  286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD------  359 (508)
T ss_pred             cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC------
Confidence            99999999999998886 899999999999876 6999999999999999999999999999999988877765      


Q ss_pred             cccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCc-eeeecccCcEEEEEECC-CCCEEE
Q 010816          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRMTGHQQLVNHVYFSP-DGQWVA  376 (500)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~-~~~~~h~~~v~~l~~sp-~g~~la  376 (500)
                                                    +..++++|.||+|++|+........ .+..+....|+++-.-| +...++
T Consensus       360 ------------------------------G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~i  409 (508)
T KOG0275|consen  360 ------------------------------GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFI  409 (508)
T ss_pred             ------------------------------CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEE
Confidence                                          4679999999999999976543322 22334566788888887 557888


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEE
Q 010816          377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW  456 (500)
Q Consensus       377 sgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iw  456 (500)
                      .+-..++|++-++ .|+.++.+..-+..--.              +          -....||.|.++++.+.|+.++.|
T Consensus       410 VCNrsntv~imn~-qGQvVrsfsSGkREgGd--------------F----------i~~~lSpkGewiYcigED~vlYCF  464 (508)
T KOG0275|consen  410 VCNRSNTVYIMNM-QGQVVRSFSSGKREGGD--------------F----------INAILSPKGEWIYCIGEDGVLYCF  464 (508)
T ss_pred             EEcCCCeEEEEec-cceEEeeeccCCccCCc--------------e----------EEEEecCCCcEEEEEccCcEEEEE
Confidence            8888999999887 46666666432111000              0          001358999999999999999999


Q ss_pred             ECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          457 DIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       457 d~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ...++++...++.|...|..+.-+|..+.||+=++||.+++|.
T Consensus       465 ~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  465 SVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            9999999999999999999999999999999999999999995

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.5e-28  Score=235.65  Aligned_cols=253  Identities=17%  Similarity=0.266  Sum_probs=195.8

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-------------EEecCCCCCEEEEEEcC-CCCEEEEEeCCC
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-------------FKCTGHKNWVLCIAWSA-DGKHLVSGSKAG  172 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-------------~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~  172 (500)
                      |-..|....+++++..+++++.+..+..|+...+..+             ..+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            4455666777888777888888888888876543222             13568999999999999 889999999999


Q ss_pred             eEEEEeCCCCCc------ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEE
Q 010816          173 ELQCWDPQTGKP------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV  246 (500)
Q Consensus       173 ~i~~wd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~  246 (500)
                      +|++||+.++..      ....+.+|...|.++.|+|..    ...+++|+.|++|+|||+++++.+..+.+|...|.++
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~----~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl  174 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA----MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL  174 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC----CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence            999999976532      123467899999999998842    2479999999999999999999999999999999999


Q ss_pred             EeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceE-EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816          247 KWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (500)
Q Consensus       247 ~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (500)
                      +|++++ .|++++.|++|++||+++++.+..+..|.... ..+.+.++                                
T Consensus       175 a~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~--------------------------------  222 (493)
T PTZ00421        175 EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR--------------------------------  222 (493)
T ss_pred             EEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC--------------------------------
Confidence            999987 58899999999999999999888887776532 23333322                                


Q ss_pred             cCCCCcEEEEe----eCCCeEEEEcCCCCCCCceeeec-ccCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceEEEE
Q 010816          325 KGNAPERLVSG----SDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVF  398 (500)
Q Consensus       325 ~~~~~~~~~s~----s~d~~v~~wd~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~~~~~  398 (500)
                          ...++++    +.|+.|++||++....+...... +...+....|++++++|++|+ .|+.|++||+.+++++..+
T Consensus       223 ----~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~  298 (493)
T PTZ00421        223 ----KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS  298 (493)
T ss_pred             ----CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence                1234443    35899999998765544443332 234566678999999999887 4999999999998876654


Q ss_pred             e
Q 010816          399 R  399 (500)
Q Consensus       399 ~  399 (500)
                      .
T Consensus       299 ~  299 (493)
T PTZ00421        299 S  299 (493)
T ss_pred             e
Confidence            4

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.4e-28  Score=227.59  Aligned_cols=243  Identities=41%  Similarity=0.700  Sum_probs=207.4

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE
Q 010816          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (500)
Q Consensus       145 ~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i  224 (500)
                      .+++|.++|.+++|+|++++|++++.||.+++|+..+++.. ..+..|...+..+.|.|.     ...+++++.|+.+++
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~-----~~~l~~~~~~~~i~i   77 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-RTLKGHTGPVRDVAASAD-----GTYLASGSSDKTIRL   77 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-EEEecCCcceeEEEECCC-----CCEEEEEcCCCeEEE
Confidence            45689999999999999999999999999999999877543 345678888888888763     357999999999999


Q ss_pred             EECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCC
Q 010816          225 WDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT  303 (500)
Q Consensus       225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  303 (500)
                      ||+..++.+..+..|...+.++.|.+++. +++++.|+.|++||+.+++....                           
T Consensus        78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------------------------  130 (289)
T cd00200          78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT---------------------------  130 (289)
T ss_pred             EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEE---------------------------
Confidence            99998888888889999999999998764 55555699999999875433221                           


Q ss_pred             CCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCc
Q 010816          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS  383 (500)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~  383 (500)
                                                                          +..|...+.+++|+|++.++++++.|+.
T Consensus       131 ----------------------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~  158 (289)
T cd00200         131 ----------------------------------------------------LRGHTDWVNSVAFSPDGTFVASSSQDGT  158 (289)
T ss_pred             ----------------------------------------------------eccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence                                                                1135567899999999999999988999


Q ss_pred             EEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc
Q 010816          384 IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL  463 (500)
Q Consensus       384 i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~  463 (500)
                      |++||+.+++.+..+..|...+.++                           .|+|+++.+++++.|+.|++||++.++.
T Consensus       159 i~i~d~~~~~~~~~~~~~~~~i~~~---------------------------~~~~~~~~l~~~~~~~~i~i~d~~~~~~  211 (289)
T cd00200         159 IKLWDLRTGKCVATLTGHTGEVNSV---------------------------AFSPDGEKLLSSSSDGTIKLWDLSTGKC  211 (289)
T ss_pred             EEEEEccccccceeEecCccccceE---------------------------EECCCcCEEEEecCCCcEEEEECCCCce
Confidence            9999999998888888888777766                           5689999999999999999999999888


Q ss_pred             cccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          464 KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       464 ~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ...+.+|...+.++.|+|++.++++++.|+.|++|+
T Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~  247 (289)
T cd00200         212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD  247 (289)
T ss_pred             ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence            888888999999999999999999999899999997

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=4.4e-29  Score=232.99  Aligned_cols=279  Identities=25%  Similarity=0.440  Sum_probs=226.1

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce--eEEecCCCCCEEE-EEEcC-CCCEEEEEeCCCeEE
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLC-IAWSA-DGKHLVSGSKAGELQ  175 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~-v~~s~-~~~~l~s~~~d~~i~  175 (500)
                      +...+.||...|..+++.+.. .++++|.||++++|+-..+.-  ...+.+|.+.|.+ ++|-+ ++..|++|+.|.+|.
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~   84 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII   84 (745)
T ss_pred             eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence            345688999999999876654 789999999999999755433  2456678888887 88875 445699999999999


Q ss_pred             EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEE
Q 010816          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY  255 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~  255 (500)
                      +|.+....+.. .+.+|+..|.+++-.     .+ ..+++||+|.++++|-.  +++...+.+|+..|.++..-+++.++
T Consensus        85 v~~~~~~~P~~-~LkgH~snVC~ls~~-----~~-~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~v  155 (745)
T KOG0301|consen   85 VFKLSQAEPLY-TLKGHKSNVCSLSIG-----ED-GTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYV  155 (745)
T ss_pred             EEecCCCCchh-hhhccccceeeeecC-----Cc-CceEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEE
Confidence            99998877654 689999999998632     12 35899999999999964  56777799999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  335 (500)
                      ||+.|.+|++|.-  ++.++++.+|..-|+.+++-++                                     ..|+++
T Consensus       156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-------------------------------------~~flSc  196 (745)
T KOG0301|consen  156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-------------------------------------SHFLSC  196 (745)
T ss_pred             eccCcceeeeccC--CchhhhhccchhheeeeEEecC-------------------------------------CCeEee
Confidence            9999999999974  7889999999999999987653                                     358999


Q ss_pred             eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC  415 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  415 (500)
                      +.||.|++|++.  ......+.+|+.-|.+++..+++..++++++|+++++|+..  ++...+.-....++++.+     
T Consensus       197 sNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~-----  267 (745)
T KOG0301|consen  197 SNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV-----  267 (745)
T ss_pred             cCCceEEEEecc--CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE-----
Confidence            999999999973  34566788999999999988889999999999999999876  555544433334444422     


Q ss_pred             ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                                            -++|+ +++|++||.||||...
T Consensus       268 ----------------------L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  268 ----------------------LLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             ----------------------eeCCC-EEEeccCceEEEEEec
Confidence                                  23444 7889999999999765

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.2e-29  Score=221.53  Aligned_cols=287  Identities=25%  Similarity=0.408  Sum_probs=221.6

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-----------------EEe-cCCCCCEEEEEEcCCCC
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-----------------FKC-TGHKNWVLCIAWSADGK  163 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-----------------~~~-~~h~~~v~~v~~s~~~~  163 (500)
                      ..+..|.-+|.+++++|+.++.++++.|++|.-|++.++...                 ..- ++|...+.+++.++||+
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            345679999999999999999999999999999998765422                 001 37888999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccE
Q 010816          164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV  243 (500)
Q Consensus       164 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v  243 (500)
                      +||+|+.|..|.||+.++.+.+. .+.+|.+.|.+++|..     ....+.+++.|++|++|++.....+.++.||...|
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~-~~~ghr~~V~~L~fr~-----gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v  289 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVK-VFKGHRGAVSSLAFRK-----GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV  289 (479)
T ss_pred             EEEecCCCceEEEecCcccchhh-cccccccceeeeeeec-----CccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence            99999999999999999998765 4789999999999864     23479999999999999999888888899999999


Q ss_pred             EEEEeCCCCeEEE-EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816          244 TCVKWGGDGVIYT-GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (500)
Q Consensus       244 ~~~~~~~~~~l~t-~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (500)
                      ..+.-..-+..+| |+.|+++++|++..- ..-.+.++...+.++++-.                               
T Consensus       290 ~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-------------------------------  337 (479)
T KOG0299|consen  290 LGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-------------------------------  337 (479)
T ss_pred             eeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-------------------------------
Confidence            9988766666666 559999999999542 2234566776777776532                               


Q ss_pred             hhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec-----------ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010816          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-----------HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (500)
Q Consensus       323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~-----------h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~  391 (500)
                            .++|++||+||.|.+|++...+.....-..           +..+|++|+..|...++|+|+.+|.||+|.+.+
T Consensus       338 ------~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~  411 (479)
T KOG0299|consen  338 ------DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED  411 (479)
T ss_pred             ------ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence                  357999999999999998655433222222           234899999999999999999999999999887


Q ss_pred             Cc-eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCCcEEEEE
Q 010816          392 GK-FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDSTLKVWD  457 (500)
Q Consensus       392 ~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd  457 (500)
                      |- .+..       ++.+                  ....++..++|+++|+.+++| +....+--|-
T Consensus       412 g~r~i~~-------l~~l------------------s~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  412 GLRAINL-------LYSL------------------SLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             Cccccce-------eeec------------------ccccEEEEEEEccCCCEEEEecccccccceee
Confidence            72 1111       1111                  122334445788999955554 5565555553

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.7e-30  Score=222.57  Aligned_cols=279  Identities=19%  Similarity=0.355  Sum_probs=216.5

Q ss_pred             EEecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816          144 FKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (500)
Q Consensus       144 ~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v  222 (500)
                      ..+.||.+.|.|++=+|.. ..++||+.||.|++||+.+..+. ..+.+|.+.|.++.+..       ..+++++.|.+|
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-~~f~AH~G~V~Gi~v~~-------~~~~tvgdDKtv  131 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-RTFKAHEGLVRGICVTQ-------TSFFTVGDDKTV  131 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh-heeecccCceeeEEecc-------cceEEecCCcce
Confidence            4567999999999999986 78999999999999999876554 46889999999998653       469999999999


Q ss_pred             EEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816          223 RIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (500)
Q Consensus       223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (500)
                      +.|-+... .+.++.+ ...+..+.-.. +..++|+|.  .|.|||......++.+.-....+.++.++|.         
T Consensus       132 K~wk~~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpv---------  198 (433)
T KOG0268|consen  132 KQWKIDGP-PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPV---------  198 (433)
T ss_pred             eeeeccCC-cceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCC---------
Confidence            99987653 3333222 12233333221 345677766  4888999887778777766666777776653         


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC
Q 010816          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (500)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D  381 (500)
                                                ....|+++..|+.|.++|++...........  -.-+.++|+|.+-.+++|++|
T Consensus       199 --------------------------ETsILas~~sDrsIvLyD~R~~~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED  250 (433)
T KOG0268|consen  199 --------------------------ETSILASCASDRSIVLYDLRQASPLKKVILT--MRTNTICWNPEAFNFVAANED  250 (433)
T ss_pred             --------------------------cchheeeeccCCceEEEecccCCccceeeee--ccccceecCccccceeecccc
Confidence                                      1345788889999999999876554433322  335789999988899999999


Q ss_pred             CcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816          382 KSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       382 g~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                      ..++.||.+.. +.+.++++|...|.++                           .|||.|+-+++||.|.+|+||....
T Consensus       251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dV---------------------------dfsptG~EfvsgsyDksIRIf~~~~  303 (433)
T KOG0268|consen  251 HNLYTYDMRNLSRPLNVHKDHVSAVMDV---------------------------DFSPTGQEFVSGSYDKSIRIFPVNH  303 (433)
T ss_pred             ccceehhhhhhcccchhhcccceeEEEe---------------------------ccCCCcchhccccccceEEEeecCC
Confidence            99999998864 5678889999998888                           5699999999999999999999876


Q ss_pred             ccccccccCcc---cCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          461 QKLKQDLPGHA---DEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       461 ~~~~~~~~~h~---~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      +......  |.   ..|++|.||-|.++++|||+|+.||+|.+
T Consensus       304 ~~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  304 GHSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             Ccchhhh--hHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence            5543321  22   35899999999999999999999999964

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=7.6e-30  Score=228.67  Aligned_cols=255  Identities=25%  Similarity=0.445  Sum_probs=201.5

Q ss_pred             eEEecccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCC-CEEEEEeCC
Q 010816           93 RIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKA  171 (500)
Q Consensus        93 ~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d  171 (500)
                      .++....|.+++.||..+|.+++|+++|..+.|+|.|+.+++||+++|+++..+. -...+.|+.|.||+ +.+++|+.|
T Consensus       243 ~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd  321 (503)
T KOG0282|consen  243 NVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSD  321 (503)
T ss_pred             EEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCC
Confidence            3445578999999999999999999999999999999999999999999987764 24568999999998 889999999


Q ss_pred             CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEeCC
Q 010816          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGG  250 (500)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~  250 (500)
                      +.|+.||+++++.+. ....|-+.|..+.|.+     .+++|++.+.|++++||+.+....+.... .+.-...|+...|
T Consensus       322 ~ki~~wDiRs~kvvq-eYd~hLg~i~~i~F~~-----~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P  395 (503)
T KOG0282|consen  322 KKIRQWDIRSGKVVQ-EYDRHLGAILDITFVD-----EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP  395 (503)
T ss_pred             CcEEEEeccchHHHH-HHHhhhhheeeeEEcc-----CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence            999999999998543 5677888899998876     45799999999999999998876554332 1223345666666


Q ss_pred             CC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816          251 DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (500)
Q Consensus       251 ~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (500)
                      ++ .++.-+.|+.|.+|.+...-                                                         
T Consensus       396 ~~~~~~aQs~dN~i~ifs~~~~~---------------------------------------------------------  418 (503)
T KOG0282|consen  396 NGKWFAAQSMDNYIAIFSTVPPF---------------------------------------------------------  418 (503)
T ss_pred             CCCeehhhccCceEEEEeccccc---------------------------------------------------------
Confidence            54 56666777777777532100                                                         


Q ss_pred             cEEEEeeCCCeEEEEcCCCCCCCceeeecccC--cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (500)
Q Consensus       330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~--~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~  407 (500)
                                         .......+.||..  --..+.|||||.+|++|+.||.+.+||.++-+++..+++|.+++..
T Consensus       419 -------------------r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~  479 (503)
T KOG0282|consen  419 -------------------RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIG  479 (503)
T ss_pred             -------------------ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEE
Confidence                               0011223334432  2346799999999999999999999999999999999999998877


Q ss_pred             EEeeeeeeecCCCCceeeeeccccceeeEEcCC-CCEEEEEECCCcEEEEE
Q 010816          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD-SRLLLSGSKDSTLKVWD  457 (500)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~s~d~~v~iwd  457 (500)
                      +                           .|+|. ..-+|+++.||.|++||
T Consensus       480 v---------------------------~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  480 V---------------------------DWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             E---------------------------EecCCCcceeEecccCceeEecC
Confidence            7                           45664 35799999999999996

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.3e-27  Score=232.57  Aligned_cols=251  Identities=18%  Similarity=0.305  Sum_probs=187.5

Q ss_pred             EeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCcc-------cccccCcccceE
Q 010816          126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPS-------GNPLSGHKKWIT  197 (500)
Q Consensus       126 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~-------~~~~~~~~~~v~  197 (500)
                      |+.++.|++|+.....++..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+.++...       ...+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            567899999999888888889999999999999997 789999999999999999764321       123578999999


Q ss_pred             EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEE
Q 010816          198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRE  276 (500)
Q Consensus       198 ~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~  276 (500)
                      ++.|+|..    ...+++++.|++|+|||+++++.+..+. |...|.+++|+++|. |++++.|+.|++||+++++.+..
T Consensus       130 sVaf~P~g----~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t  204 (568)
T PTZ00420        130 IIDWNPMN----YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS  204 (568)
T ss_pred             EEEECCCC----CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            99999843    1356799999999999999988777665 567899999999885 56678899999999999887766


Q ss_pred             eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee
Q 010816          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM  356 (500)
Q Consensus       277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~  356 (500)
                      +.+|...+..                                                                      
T Consensus       205 l~gH~g~~~s----------------------------------------------------------------------  214 (568)
T PTZ00420        205 FHIHDGGKNT----------------------------------------------------------------------  214 (568)
T ss_pred             EecccCCcee----------------------------------------------------------------------
Confidence            6554321110                                                                      


Q ss_pred             ecccCcEEEEEECCCCCEEEEEeCCC----cEEEEeCCC-CceEEEEeCCc--ccEEEEEeeeeeeecCCCCceeeeecc
Q 010816          357 TGHQQLVNHVYFSPDGQWVASASFDK----SIKLWNGTT-GKFVAVFRGHV--GPVYQIRFELIYCFRYPSNFYCVVDMS  429 (500)
Q Consensus       357 ~~h~~~v~~l~~sp~g~~lasgs~Dg----~i~lwd~~~-~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~~~~~  429 (500)
                          ..+....|++++.+|++++.|+    .|+|||++. ++.+..+..+.  +.+...                     
T Consensus       215 ----~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~---------------------  269 (568)
T PTZ00420        215 ----KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPH---------------------  269 (568)
T ss_pred             ----EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEe---------------------
Confidence                0122345778999999888774    799999985 45554433221  211111                     


Q ss_pred             ccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc--cccCcccCEEEEEEcCCC
Q 010816          430 CCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDG  483 (500)
Q Consensus       430 ~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg  483 (500)
                            ...++|.++++|+.|++|++|++..+....  .+. +..++.+++|.|+.
T Consensus       270 ------~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        270 ------YDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             ------eeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence                  124568899999999999999998764322  222 44667889999963

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.1e-27  Score=198.43  Aligned_cols=276  Identities=24%  Similarity=0.352  Sum_probs=220.5

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE--EecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEe
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWD  178 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd  178 (500)
                      +.+.+|.+.|.+++|+-+|..||+|+.|+++++|+++..+...  ...+|.+.|-.++|.|. .+++++++.|++|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4567899999999999999999999999999999998765443  35689999999999874 67999999999999999


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEE
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~  257 (500)
                      .+.+++.....  .+..-.-+.|.|     ++.+++.++.|..|...|.++.+.+.... ....+.-+.|+.++ .++..
T Consensus        94 ~r~~k~~~~i~--~~~eni~i~wsp-----~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   94 IRSGKCTARIE--TKGENINITWSP-----DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             eccCcEEEEee--ccCcceEEEEcC-----CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEe
Confidence            99988754322  122224567877     45789999999999999999877655432 23445566676444 55555


Q ss_pred             eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      ..-|+|.|-....-+.++.++.|.....++.++|+                                    +.+|++|+.
T Consensus       166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~------------------------------------GryfA~GsA  209 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD------------------------------------GRYFATGSA  209 (313)
T ss_pred             cCCceEEEEeccccccccccccCCcceEEEEECCC------------------------------------CceEeeccc
Confidence            55699999988888889999999887778888775                                    457999999


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                      |..+.+||+..- .....+..+.-+|+.++||.||++||+||+|..|-|=++++|..+...+ ++++.+.+         
T Consensus       210 DAlvSLWD~~EL-iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tV---------  278 (313)
T KOG1407|consen  210 DALVSLWDVDEL-ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTV---------  278 (313)
T ss_pred             cceeeccChhHh-hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeE---------
Confidence            999999997532 2344567788999999999999999999999999999999998776544 45555555         


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECC
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD  450 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d  450 (500)
                                        +|+|...+||-+..|
T Consensus       279 ------------------AWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  279 ------------------AWHPKRPLLAYACDD  293 (313)
T ss_pred             ------------------EecCCCceeeEEecC
Confidence                              789999999988765

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.5e-28  Score=219.31  Aligned_cols=291  Identities=24%  Similarity=0.386  Sum_probs=230.9

Q ss_pred             EEEEeCCCCceeEEecCCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCC
Q 010816          132 VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC  210 (500)
Q Consensus       132 i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  210 (500)
                      ++-|+-.+..++.   .-.+.|.+++|+|...+ +|+. ..-.++||+..+....+ .+..-+..+.++.|.     .++
T Consensus        11 ~~~w~~~~~~~~~---ke~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k-~~srFk~~v~s~~fR-----~DG   80 (487)
T KOG0310|consen   11 IRYWRQETFPPVH---KEHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRK-TFSRFKDVVYSVDFR-----SDG   80 (487)
T ss_pred             chhhhhhcccccc---cccCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhh-hHHhhccceeEEEee-----cCC
Confidence            4456544443332   23467999999996543 3333 34679999987654332 344456778888775     377


Q ss_pred             ceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEE
Q 010816          211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA  288 (500)
Q Consensus       211 ~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~  288 (500)
                      +.++.|...|.|+|+|..+...+..+.+|+.+|..+.|++.+  .+++|+.|+.+++||+.++.....+.+|...|++.+
T Consensus        81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~  160 (487)
T KOG0310|consen   81 RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD  160 (487)
T ss_pred             eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence            889999999999999988877788899999999999999854  577899999999999999887668899999999998


Q ss_pred             ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEE
Q 010816          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF  368 (500)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~  368 (500)
                      ++|.                                   .+..+++||.||.|++||.+... .......|..+|..+.|
T Consensus       161 ~~~~-----------------------------------~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~  204 (487)
T KOG0310|consen  161 ISPA-----------------------------------NDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLA  204 (487)
T ss_pred             cccC-----------------------------------CCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEE
Confidence            8764                                   23468999999999999988765 33344578999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE
Q 010816          369 SPDGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG  447 (500)
Q Consensus       369 sp~g~~lasgs~Dg~i~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~  447 (500)
                      -|.|..+|+++. ..|++||+.+|. .+.....|...|+++++                           ..+++.|++|
T Consensus       205 lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l---------------------------~s~~~rLlS~  256 (487)
T KOG0310|consen  205 LPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRL---------------------------ASDSTRLLSG  256 (487)
T ss_pred             cCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEe---------------------------ecCCceEeec
Confidence            999999998864 579999999654 45555569999999865                           4578999999


Q ss_pred             ECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816          448 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  497 (500)
Q Consensus       448 s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i  497 (500)
                      +.|+.|++||+..-+.+..+. -.++|.+++.+||++.++.|-.||.+-+
T Consensus       257 sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  257 SLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             ccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence            999999999988888777664 4578999999999999999999997754

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5.7e-28  Score=204.30  Aligned_cols=258  Identities=20%  Similarity=0.290  Sum_probs=194.0

Q ss_pred             cccEEEEEEcC-CCCeEEEEeCCCcEEEEeCCCC-cee-EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816          108 TEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-TPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (500)
Q Consensus       108 ~~~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~~-~~~-~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~  184 (500)
                      .+.|.+|+||| ...+++.||.|++||+|++... ... .....|.++|.+++|+.||..+++|+.|+.+++||+.+++.
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~  106 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV  106 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence            67899999999 4566778999999999999763 221 33457999999999999999999999999999999999965


Q ss_pred             ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEE
Q 010816          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK  264 (500)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~  264 (500)
                      .  .+..|.++|..+.|-+...   ...+++||+|+++|.||.+....+.++.- ...|.++..- ...++.+..++.|.
T Consensus       107 ~--~v~~Hd~pvkt~~wv~~~~---~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~-~pm~vVata~r~i~  179 (347)
T KOG0647|consen  107 S--QVAAHDAPVKTCHWVPGMN---YQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL-YPMAVVATAERHIA  179 (347)
T ss_pred             e--eeeecccceeEEEEecCCC---cceeEecccccceeecccCCCCeeeeeec-cceeeehhcc-CceeEEEecCCcEE
Confidence            3  4678999999999976432   24689999999999999998877765532 2344444332 23677889999999


Q ss_pred             EEeCCCCeeE-EEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEE
Q 010816          265 VWETTQGKLI-RELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (500)
Q Consensus       265 lwd~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~  342 (500)
                      +|+++.+... +..+ .-.-.+++++..++                                    .+..+.|+-.|.+.
T Consensus       180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d------------------------------------~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  180 VYNLENPPTEFKRIESPLKWQTRCVACFQD------------------------------------KDGFALGSIEGRVA  223 (347)
T ss_pred             EEEcCCCcchhhhhcCcccceeeEEEEEec------------------------------------CCceEeeeecceEE
Confidence            9999766322 2211 12233566665543                                    23457888888888


Q ss_pred             EEcCCCCC-CCceeeeccc---------CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816          343 LWEPAVSK-QPKTRMTGHQ---------QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (500)
Q Consensus       343 ~wd~~~~~-~~~~~~~~h~---------~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~  408 (500)
                      +..+.... .....+..|.         ..|++++|+|.-..|+|++.||++..||-.....+...+.|..+|.+-
T Consensus       224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc  299 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCC  299 (347)
T ss_pred             EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCcccee
Confidence            87665432 2223344554         248899999999999999999999999988877777778888888766

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.5e-27  Score=223.16  Aligned_cols=323  Identities=17%  Similarity=0.312  Sum_probs=248.9

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee---EEecCCCCCEEEEEEcCC-----------CCEEEEEeCCCeEEE
Q 010816          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---FKCTGHKNWVLCIAWSAD-----------GKHLVSGSKAGELQC  176 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~v~~s~~-----------~~~l~s~~~d~~i~~  176 (500)
                      -.++.|+|...+|...-.|..+.|||+.+...+   ..+-.|...|+.+.--|.           ..-+++|+.|++||+
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL  406 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence            347889999999999999999999999864432   334468888877766541           125789999999999


Q ss_pred             EeCCCCCc----ccccc--------------------------------cCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816          177 WDPQTGKP----SGNPL--------------------------------SGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (500)
Q Consensus       177 wd~~~~~~----~~~~~--------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg  220 (500)
                      ||+..+..    .+.++                                -.....+.+++.+     +++..+++|..-|
T Consensus       407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-----p~gqhLAsGDr~G  481 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-----PDGQHLASGDRGG  481 (1080)
T ss_pred             eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-----CCcceecccCccC
Confidence            99875211    00000                                0111234444443     4667899999999


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEeCCC----CeEEEEeCCCeEEEEeCCCC-eeEEEeecCCceEEEEEecCccee
Q 010816          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGD----GVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYAL  295 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~l~t~~~dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~  295 (500)
                      ++++||+..-..+..+.+|...|.|+.|+..    .+|++++.|.-|.+||.... .+++++.+|...|+++.|...+  
T Consensus       482 nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g--  559 (1080)
T KOG1408|consen  482 NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG--  559 (1080)
T ss_pred             ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC--
Confidence            9999999988877778899999999999853    36899999999999998643 5678889999999998875431  


Q ss_pred             eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc-----cCcEEEEEECC
Q 010816          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-----QQLVNHVYFSP  370 (500)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h-----~~~v~~l~~sp  370 (500)
                                                      ....+++++.|..+.+ +..........+..|     ...+..++..|
T Consensus       560 --------------------------------ln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp  606 (1080)
T KOG1408|consen  560 --------------------------------LNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDP  606 (1080)
T ss_pred             --------------------------------CceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCC
Confidence                                            1235778888877653 322211111112222     23578899999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEEeC---CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE
Q 010816          371 DGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG  447 (500)
Q Consensus       371 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~  447 (500)
                      +.+++++++.|+.|+|||+++|+.++.|+|   |.+..-.+                           ...|.|-++|+.
T Consensus       607 ~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv---------------------------~lDPSgiY~atS  659 (1080)
T KOG1408|consen  607 TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV---------------------------ILDPSGIYLATS  659 (1080)
T ss_pred             CcceEEEEecccceEEEeccccceeeeecccccCCCceEEE---------------------------EECCCccEEEEe
Confidence            999999999999999999999999999987   44444444                           347999999999


Q ss_pred             ECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          448 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       448 s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      ..|+++-++|..+++++..+.||...|+.+.|.+|-+.|++++.||-|.||..
T Consensus       660 csdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  660 CSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             ecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence            99999999999999999999999999999999999999999999999999963

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.6e-27  Score=201.59  Aligned_cols=273  Identities=18%  Similarity=0.275  Sum_probs=214.1

Q ss_pred             CCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC-CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEE
Q 010816          148 GHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (500)
Q Consensus       148 ~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iw  225 (500)
                      ..++.|.+|+|||. ..+++++|.|++||+|+++. |.........|.++|.+++|+.     ++.++++|+.|+.+++|
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-----dgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-----DGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-----CCceEEeeccCCceEEE
Confidence            35788999999994 45666899999999999986 5655556778999999999975     55689999999999999


Q ss_pred             ECCCCeEEEEecCccccEEEEEeCCCC---eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816          226 DVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (500)
Q Consensus       226 d~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (500)
                      |+.+++ +..+..|..+|.++.|-+..   .|+||++|.+|+.||.+....+.++.-.+ .+.+..+             
T Consensus       100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv-------------  164 (347)
T KOG0647|consen  100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV-------------  164 (347)
T ss_pred             EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc-------------
Confidence            999994 55678899999999997543   58999999999999999888777665322 2322221             


Q ss_pred             CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee-cccCcEEEEEECCCCCEEEEEeCC
Q 010816          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWVASASFD  381 (500)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~lasgs~D  381 (500)
                                               ....++.+..++.|.++++........... .-.-.++||+..+|....|.|+-+
T Consensus       165 -------------------------~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE  219 (347)
T KOG0647|consen  165 -------------------------LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE  219 (347)
T ss_pred             -------------------------cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence                                     123577888899999999865543322221 223458899999988888999999


Q ss_pred             CcEEEEeCCCC--ceEEEEeCCccc------EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcE
Q 010816          382 KSIKLWNGTTG--KFVAVFRGHVGP------VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (500)
Q Consensus       382 g~i~lwd~~~~--~~~~~~~~h~~~------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v  453 (500)
                      |.+-+-.+..+  +.-.+|+.|...      ||.+                        ..++|+|.-..|++++.||+.
T Consensus       220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV------------------------Nsi~FhP~hgtlvTaGsDGtf  275 (347)
T KOG0647|consen  220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV------------------------NSIAFHPVHGTLVTAGSDGTF  275 (347)
T ss_pred             ceEEEEecCCCCccCceeEEEeccCCCCCCceEEe------------------------cceEeecccceEEEecCCceE
Confidence            99999988876  444567777531      3322                        234789998999999999999


Q ss_pred             EEEECCCccccccccCcccCEEEEEEcCCCCEEEEE
Q 010816          454 KVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG  489 (500)
Q Consensus       454 ~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~  489 (500)
                      .+||-.....++..+-|..+|++.+|+.+|..+|-+
T Consensus       276 ~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  276 SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             EEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            999998888888888899999999999999999865

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=9e-27  Score=221.84  Aligned_cols=395  Identities=19%  Similarity=0.275  Sum_probs=272.6

Q ss_pred             ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEE
Q 010816           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQC  176 (500)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~~  176 (500)
                      ++...++.++.+.|+++.-+|-=..+|.|..+|+|.|++++..+.+..++...+.|++++|..||. .+++|+..|.+.+
T Consensus       192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~  271 (910)
T KOG1539|consen  192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF  271 (910)
T ss_pred             CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence            456678899999999999999999999999999999999999999888875569999999999986 5567777899999


Q ss_pred             EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC----eEEEEecCccccEEEEEeCC-C
Q 010816          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR----KCVICLSGHTLAVTCVKWGG-D  251 (500)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~-~  251 (500)
                      ||++..+........|...+....|.|     .+..+++++.|..+++|=..++    ..+....||..+-.|+.|.. +
T Consensus       272 wDLe~kkl~~v~~nah~~sv~~~~fl~-----~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~  346 (910)
T KOG1539|consen  272 WDLEKKKLINVTRNAHYGSVTGATFLP-----GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ  346 (910)
T ss_pred             EEcCCCeeeeeeeccccCCcccceecC-----CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence            999988777667778988888888776     3457999999999998855433    34566679999999999973 4


Q ss_pred             C-eEEEEeCCCeEEEEeCCCCeeEEE------------------eecCCceEEEEEecCcce-----ee--------ecc
Q 010816          252 G-VIYTGSQDCTIKVWETTQGKLIRE------------------LKGHGHWVNSLALSTEYA-----LR--------TGA  299 (500)
Q Consensus       252 ~-~l~t~~~dg~i~lwd~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~-----~~--------~~~  299 (500)
                      + .+.+++.|++.+.+++..-..-+.                  .+..-.+|..+++.....     +.        ...
T Consensus       347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t  426 (910)
T KOG1539|consen  347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT  426 (910)
T ss_pred             cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence            4 588999999999998643211000                  000112344444332110     00        000


Q ss_pred             ccC----CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee--eecccCcEEEEEECCCCC
Q 010816          300 FDH----TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQ  373 (500)
Q Consensus       300 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~--~~~h~~~v~~l~~sp~g~  373 (500)
                      ++.    .|.....+...++.............++..+.|+..|+|-++++..+......  -..|...|+.++...-++
T Consensus       427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~  506 (910)
T KOG1539|consen  427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR  506 (910)
T ss_pred             EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc
Confidence            000    01111111111110000001112345667788999999999998765432222  357999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee---cCCCCce------------eeeeccccceeeEEc
Q 010816          374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF---RYPSNFY------------CVVDMSCCMSLYSWS  438 (500)
Q Consensus       374 ~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~~~~~~------------~~~~~~~~~~~~~~s  438 (500)
                      .+++++.||.++.||..+..++..++-.. ++..+........   ....-..            -.......++.+.||
T Consensus       507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l~~-~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS  585 (910)
T KOG1539|consen  507 LLVSAGADGILKFWDFKKKVLKKSLRLGS-SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS  585 (910)
T ss_pred             eEEEccCcceEEEEecCCcceeeeeccCC-CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence            99999999999999999887666554211 1111111100000   0000000            112234457778999


Q ss_pred             CCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC-CcEEEec
Q 010816          439 ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD-RVLKLWM  499 (500)
Q Consensus       439 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D-~~v~iW~  499 (500)
                      |||++|++++.|++||+||+.++.++..+. -..+..++.|||+|.+|||+..| .-|++|.
T Consensus       586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  586 PDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            999999999999999999999998876553 34567899999999999999999 6799994

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=1e-26  Score=221.50  Aligned_cols=384  Identities=18%  Similarity=0.260  Sum_probs=283.3

Q ss_pred             EEEEEEcCCC--CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          111 VLSVAFSPDG--RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       111 V~~~~~sp~~--~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      |+++ +||..  +.++.|+.+|.++||++.+++.++.++++...|+++.=+|-=+.+|.|..+|+|.+++++.++.+.. 
T Consensus       162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s-  239 (910)
T KOG1539|consen  162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS-  239 (910)
T ss_pred             eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE-
Confidence            6665 56764  5689999999999999999999999999999999999999888999999999999999998875532 


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEeCCC-CeEEEEeCCCeEEEE
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGD-GVIYTGSQDCTIKVW  266 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~-~~l~t~~~dg~i~lw  266 (500)
                      +....+.|++++|....    ...+++|...|.+-+||++..+....+. .|...|....|-+. ..+++++.|+.+++|
T Consensus       240 Fk~d~g~VtslSFrtDG----~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~  315 (910)
T KOG1539|consen  240 FKQDWGRVTSLSFRTDG----NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW  315 (910)
T ss_pred             EEccccceeEEEeccCC----CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence            33235889999987532    2478889999999999999988776655 78788888887654 478899999999988


Q ss_pred             eCC--CC--eeEEEeecCCceEEEEEecC--cceeeeccccCCCCCCCCHHHHHHHHHHhh---------hh-----hc-
Q 010816          267 ETT--QG--KLIRELKGHGHWVNSLALST--EYALRTGAFDHTGKQYSSPEEMKKAALERY---------NK-----IK-  325 (500)
Q Consensus       267 d~~--~~--~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-----~~-  325 (500)
                      =..  .|  +.++...+|..+-.++.+..  ...+.....|.+-+.+....+.....+...         +.     .. 
T Consensus       316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~  395 (910)
T KOG1539|consen  316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL  395 (910)
T ss_pred             EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence            443  34  56777778888887777652  234445555555444443333322222110         00     00 


Q ss_pred             -------------CCCCcEEEEeeCCCeEEEEcCCCCCCCceee-----ecccCcEEEEEECCCCCEEEEEeCCCcEEEE
Q 010816          326 -------------GNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (500)
Q Consensus       326 -------------~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~-----~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lw  387 (500)
                                   ..-.+.+++.-.+...+.|+.+....-...+     ..-...+++++.++-|++.+.|...|.|-+|
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f  475 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF  475 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence                         0001223344456678889876543222222     1223568999999999999999999999999


Q ss_pred             eCCCCceEEEE---eCCcccEEEEEeeeeeeecC------CCC--------ceeeeeccccceeeEEcCCCCEEEEEECC
Q 010816          388 NGTTGKFVAVF---RGHVGPVYQIRFELIYCFRY------PSN--------FYCVVDMSCCMSLYSWSADSRLLLSGSKD  450 (500)
Q Consensus       388 d~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~------~~~--------~~~~~~~~~~~~~~~~s~~~~~l~s~s~d  450 (500)
                      ++++|-....|   ..|.++|..+..........      ...        .....+..+++....++....++|.+..|
T Consensus       476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd  555 (910)
T KOG1539|consen  476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD  555 (910)
T ss_pred             EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc
Confidence            99999988888   58999999998743221111      111        12223344555666667777889999999


Q ss_pred             CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          451 STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       451 ~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      -.|+++|..+.+..+.+.||.++|++++|||||+||++++.|++||+|+.
T Consensus       556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence            99999999999999999999999999999999999999999999999984

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.8e-27  Score=209.41  Aligned_cols=282  Identities=22%  Similarity=0.349  Sum_probs=237.3

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~  187 (500)
                      ...+.++...|....++||+.|.++.++|...++.+..++||...|+.+.|+|+...+++++.|..|++|....... ..
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-~~  297 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-PT  297 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-cc
Confidence            35788999999888999999999999999999999999999999999999999999999999999999998765543 34


Q ss_pred             cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC--ccccEEEEEeCCCCe-EEEEeCCCeEE
Q 010816          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLAVTCVKWGGDGV-IYTGSQDCTIK  264 (500)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~-l~t~~~dg~i~  264 (500)
                      ....|..+|+.+..+|     .+.+|++++.|++.-+.|++.+.++.....  ....+++.+|+|||. +.+|..|+.++
T Consensus       298 ~~~~h~~~V~~ls~h~-----tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vk  372 (506)
T KOG0289|consen  298 SSRPHEEPVTGLSLHP-----TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVK  372 (506)
T ss_pred             ccccccccceeeeecc-----CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEE
Confidence            5678999999988765     557999999999999999999988766543  334689999999996 55789999999


Q ss_pred             EEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEE
Q 010816          265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (500)
Q Consensus       265 lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~w  344 (500)
                      +||+..+..+..+.+|..+|.+++|+.+                                    +-.++++++|+.|++|
T Consensus       373 iwdlks~~~~a~Fpght~~vk~i~FsEN------------------------------------GY~Lat~add~~V~lw  416 (506)
T KOG0289|consen  373 IWDLKSQTNVAKFPGHTGPVKAISFSEN------------------------------------GYWLATAADDGSVKLW  416 (506)
T ss_pred             EEEcCCccccccCCCCCCceeEEEeccC------------------------------------ceEEEEEecCCeEEEE
Confidence            9999999999999999999999999865                                    4579999999999999


Q ss_pred             cCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC--CceEEEEeCCcccEEEEEeeeeeeecCCCCc
Q 010816          345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT--GKFVAVFRGHVGPVYQIRFELIYCFRYPSNF  422 (500)
Q Consensus       345 d~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  422 (500)
                      |++..+............+.+++|.+.|.+|+.++.|=.|++++-.+  ..++..+..|.+....++|            
T Consensus       417 DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F------------  484 (506)
T KOG0289|consen  417 DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRF------------  484 (506)
T ss_pred             EehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeee------------
Confidence            99877665554444445799999999999999998887777776443  4556667777777666654            


Q ss_pred             eeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       423 ~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                                     ....++++++|.|...+++.+
T Consensus       485 ---------------g~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  485 ---------------GEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ---------------cccceEEeeccchhheEEeec
Confidence                           556789999999999888854

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1e-27  Score=213.78  Aligned_cols=292  Identities=26%  Similarity=0.366  Sum_probs=227.5

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc----------------cc-cCcccceEEEEeeeeec
Q 010816          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN----------------PL-SGHKKWITGISWEPVHL  206 (500)
Q Consensus       144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~----------------~~-~~~~~~v~~~~~~~~~~  206 (500)
                      .....|..++.|+.++|+++++++++.|++|.-|++.+|+....                .- .+|...+.+++.++   
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~---  212 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS---  212 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC---
Confidence            34557999999999999999999999999999999988763311                01 26777777777554   


Q ss_pred             CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEE
Q 010816          207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVN  285 (500)
Q Consensus       207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~  285 (500)
                        ++++|++|+.|..|.||+..+.+.+.++.+|...|.+++|.. ...+++++.|++|++|++..-..+.++-+|...|.
T Consensus       213 --Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~  290 (479)
T KOG0299|consen  213 --DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL  290 (479)
T ss_pred             --CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence              778999999999999999999999999999999999999964 35799999999999999988888888889998888


Q ss_pred             EEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-EeeCCCeEEEEcCCCCCCCceeeecccCcEE
Q 010816          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN  364 (500)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~  364 (500)
                      .+....                                     .++.+ .|+.|+++++|++..  ..+..+.+|...+-
T Consensus       291 ~IdaL~-------------------------------------reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sid  331 (479)
T KOG0299|consen  291 GIDALS-------------------------------------RERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSID  331 (479)
T ss_pred             eechhc-------------------------------------ccceEEeccccceeEEEeccc--cceeeeeCCCCCee
Confidence            876432                                     23344 466999999999843  33455678888999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEE
Q 010816          365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL  444 (500)
Q Consensus       365 ~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  444 (500)
                      |++|=. ...+++||.||.|.+|++.+.+.+.+.+...+-...+               ...+....++.++..|...++
T Consensus       332 cv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~---------------~~~~~~~Witsla~i~~sdL~  395 (479)
T KOG0299|consen  332 CVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL---------------DPVNGNFWITSLAVIPGSDLL  395 (479)
T ss_pred             eEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCc---------------cccccccceeeeEecccCceE
Confidence            999964 4579999999999999999988887665322111110               011112345666778999999


Q ss_pred             EEEECCCcEEEEECCCc----cccccccCcccCEEEEEEcCCCCEEEEE-eCCCcEE
Q 010816          445 LSGSKDSTLKVWDIRTQ----KLKQDLPGHADEVFAVDWSPDGEKVASG-GKDRVLK  496 (500)
Q Consensus       445 ~s~s~d~~v~iwd~~~~----~~~~~~~~h~~~V~~l~~s~dg~~l~s~-~~D~~v~  496 (500)
                      |+|+.+|.||+|.+..+    +++..++ -.+-|++|+|+++|++|++| |...++-
T Consensus       396 asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlG  451 (479)
T KOG0299|consen  396 ASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLG  451 (479)
T ss_pred             EecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccc
Confidence            99999999999998876    4455555 56789999999999977665 5544443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4e-27  Score=200.54  Aligned_cols=303  Identities=21%  Similarity=0.330  Sum_probs=203.3

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee----EEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEE
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQ  175 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~  175 (500)
                      ..+|+||.+.|++++|+.||++|||++.|++|+||++.+-...    ....-..+-.+.+.|+||-+-+ +++-...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            4678999999999999999999999999999999998753211    0111112245789999996644 4555566899


Q ss_pred             EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eE
Q 010816          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l  254 (500)
                      +|.....+.-       ......+.|...++                             -+.|...+..+-...++ +|
T Consensus       159 vyk~~K~~dG-------~~~~~~v~~D~~~f-----------------------------~~kh~v~~i~iGiA~~~k~i  202 (420)
T KOG2096|consen  159 VYKLVKKTDG-------SGSHHFVHIDNLEF-----------------------------ERKHQVDIINIGIAGNAKYI  202 (420)
T ss_pred             EEEeeecccC-------CCCccccccccccc-----------------------------chhcccceEEEeecCCceEE
Confidence            9976533210       11111222211111                             12355555555554444 68


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (500)
Q Consensus       255 ~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (500)
                      ++++.|..|.+|++. |+.++.+......-...+++|+                                    +..+++
T Consensus       203 msas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~------------------------------------GRFia~  245 (420)
T KOG2096|consen  203 MSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD------------------------------------GRFIAV  245 (420)
T ss_pred             EEecCCCcEEEEecC-CceeeeeccccccccceeeCCC------------------------------------CcEEEE
Confidence            899999999999998 8888777655444444555554                                    456777


Q ss_pred             eeCCCeEEEEcCCCCC-------CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC----CceEEEEeCCcc
Q 010816          335 GSDDFTMFLWEPAVSK-------QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----GKFVAVFRGHVG  403 (500)
Q Consensus       335 ~s~d~~v~~wd~~~~~-------~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~----~~~~~~~~~h~~  403 (500)
                      ++...-|++|.+...+       .....+.||+..|..++|||+...+++.|.||++||||..-    ++--.+++.-..
T Consensus       246 ~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~  325 (420)
T KOG2096|consen  246 SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSA  325 (420)
T ss_pred             ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCc
Confidence            7888889999864332       13346899999999999999999999999999999999652    111111111000


Q ss_pred             cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccccc-CcccCEEEEEEcCC
Q 010816          404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-GHADEVFAVDWSPD  482 (500)
Q Consensus       404 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d  482 (500)
                      +.                    -.......-++.+|+|+.||.+. ...+++|..++++....+. .|...|.+++|++|
T Consensus       326 pl--------------------~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~  384 (420)
T KOG2096|consen  326 PL--------------------HAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSD  384 (420)
T ss_pred             ch--------------------hhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence            00                    00000111346799999888654 4569999999987765553 48889999999999


Q ss_pred             CCEEEEEeCCCcEEEe
Q 010816          483 GEKVASGGKDRVLKLW  498 (500)
Q Consensus       483 g~~l~s~~~D~~v~iW  498 (500)
                      |++++|+|+ ..+|+.
T Consensus       385 g~~~atcGd-r~vrv~  399 (420)
T KOG2096|consen  385 GKYIATCGD-RYVRVI  399 (420)
T ss_pred             CcEEeeecc-eeeeee
Confidence            999999986 445553

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.1e-27  Score=221.76  Aligned_cols=242  Identities=31%  Similarity=0.539  Sum_probs=208.5

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~  185 (500)
                      +.+.|+++.|+++|.+||.|..+|.|.|||..+.+.+..+.+ |...|.+++|+  +..+.+|+.|+.|..+|++..+..
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~  293 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV  293 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence            478999999999999999999999999999999888888888 99999999997  678999999999999999987765


Q ss_pred             cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC--CCeEEEE--eCCC
Q 010816          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG--DGVIYTG--SQDC  261 (500)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~t~--~~dg  261 (500)
                      ...+.+|...|.++.|++     +..++++|+.|..+.|||.........+..|.+.|-+++|+|  .+.|++|  +.|+
T Consensus       294 ~~~~~~H~qeVCgLkws~-----d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  294 VSTLQGHRQEVCGLKWSP-----DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR  368 (484)
T ss_pred             hhhhhcccceeeeeEECC-----CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence            556889999999999987     557899999999999999988888888999999999999997  5688885  4799


Q ss_pred             eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE-eeCCCe
Q 010816          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-GSDDFT  340 (500)
Q Consensus       262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~s~d~~  340 (500)
                      +|++||..+|..+..+. .+..|.++.+++.+                                   .+.+.+ |-.++.
T Consensus       369 ~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~-----------------------------------kEi~sthG~s~n~  412 (484)
T KOG0305|consen  369 CIKFWNTNTGARIDSVD-TGSQVCSLIWSKKY-----------------------------------KELLSTHGYSENQ  412 (484)
T ss_pred             EEEEEEcCCCcEecccc-cCCceeeEEEcCCC-----------------------------------CEEEEecCCCCCc
Confidence            99999999998887665 34568888887753                                   122333 445678


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~  392 (500)
                      |.||+... ......+.+|...|..+++||||..+++|+.|.++++|++-..
T Consensus       413 i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  413 ITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            99999754 3456678999999999999999999999999999999998653

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3e-28  Score=214.11  Aligned_cols=249  Identities=26%  Similarity=0.406  Sum_probs=195.0

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      +..++.||..+|..+.||||.++|++++.|..+++||+.++.....+. +|...+.+++|.|||..+++|+.|++|.-||
T Consensus       261 l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd  340 (519)
T KOG0293|consen  261 LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD  340 (519)
T ss_pred             eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence            457889999999999999999999999999999999999998766543 4678999999999999999999999999999


Q ss_pred             CCCCCcccccccCc-ccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEE
Q 010816          179 PQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYT  256 (500)
Q Consensus       179 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t  256 (500)
                      ..... .. ...+- ...|.+++.     ..++..+++...|..+++++.++..+..... ...+|++...+.++. +++
T Consensus       341 lDgn~-~~-~W~gvr~~~v~dlai-----t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~Lv  412 (519)
T KOG0293|consen  341 LDGNI-LG-NWEGVRDPKVHDLAI-----TYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALV  412 (519)
T ss_pred             CCcch-hh-cccccccceeEEEEE-----cCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEE
Confidence            86332 11 11111 133555543     3477889999999999999988766554332 345789999998885 455


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                      --.+..+++||+...+.++.+.+|...-.-+.-                                 .+.+.+...+++||
T Consensus       413 nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS---------------------------------CFgg~~~~fiaSGS  459 (519)
T KOG0293|consen  413 NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS---------------------------------CFGGGNDKFIASGS  459 (519)
T ss_pred             EcccCeeEEeecchhhHHHHhhcccccceEEEe---------------------------------ccCCCCcceEEecC
Confidence            668999999999988888888777653211110                                 11223346789999


Q ss_pred             CCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCC
Q 010816          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGT  390 (500)
Q Consensus       337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~  390 (500)
                      .|+.|+||+.. ...+...+.||...|+||+|+| +..++|++|.||+||||...
T Consensus       460 ED~kvyIWhr~-sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  460 EDSKVYIWHRI-SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             CCceEEEEEcc-CCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            99999999955 4457788999999999999999 56899999999999999765

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.2e-26  Score=197.05  Aligned_cols=278  Identities=19%  Similarity=0.296  Sum_probs=206.7

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~  187 (500)
                      .+.|.++.|+|.+..|+.+++||++++||+........+ .|..++.+++|.++ ..+++|+.||.|+.+|+.++...  
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~--   88 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED--   88 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce--
Confidence            578999999999999999999999999999877444333 48999999999874 57999999999999999988753  


Q ss_pred             cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEe
Q 010816          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWE  267 (500)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd  267 (500)
                      .+..|...+.++.+.+.     ...+++||+|++|++||.+...+...+... ..|.|+.... +.|+.|+.|..+.+||
T Consensus        89 ~igth~~~i~ci~~~~~-----~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~g-~~LvVg~~~r~v~iyD  161 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYE-----VGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVSG-NRLVVGTSDRKVLIYD  161 (323)
T ss_pred             eeccCCCceEEEEeecc-----CCeEEEcccCccEEEEeccccccccccccC-ceEEEEeccC-CEEEEeecCceEEEEE
Confidence            46789999999987753     246899999999999998865444433322 2566666553 3566777777777777


Q ss_pred             CCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816          268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (500)
Q Consensus       268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~  347 (500)
                      +++-....                                                                        
T Consensus       162 LRn~~~~~------------------------------------------------------------------------  169 (323)
T KOG1036|consen  162 LRNLDEPF------------------------------------------------------------------------  169 (323)
T ss_pred             cccccchh------------------------------------------------------------------------
Confidence            76521100                                                                        


Q ss_pred             CCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----ceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG----KFVAVFRGHVGPVYQIRFELIYCFRYPSNFY  423 (500)
Q Consensus       348 ~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  423 (500)
                           +.+...-.-.++||++-|++.-.|++|-||+|.+=.++..    +....|+.|...-....  .         .+
T Consensus       170 -----q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~--~---------~y  233 (323)
T KOG1036|consen  170 -----QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE--I---------IY  233 (323)
T ss_pred             -----hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce--E---------EE
Confidence                 0001112345789999999888999999999988655554    22345666643211110  0         01


Q ss_pred             eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816          424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~  491 (500)
                             .+..++|+|--..||||+.||.|.+||+...+.+..+......|..++|+.||..||.++.
T Consensus       234 -------PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  234 -------PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             -------EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence                   1234478998889999999999999999999988888877778999999999999999875

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=3.5e-28  Score=213.84  Aligned_cols=245  Identities=26%  Similarity=0.432  Sum_probs=203.2

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      ...+|.|-.++|++++|.++++.+++++.|+.+++|++...+.+.++.||++.|+++.|......+++|+.|.+|++||+
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl  290 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL  290 (459)
T ss_pred             hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence            45678899999999999999999999999999999999999999999999999999999887777999999999999999


Q ss_pred             CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~  258 (500)
                      ..+.+....+.+...  ..|.-.       ...+++|-.|++||+||.+...+......+. .|+++..+.++ .+++++
T Consensus       291 ~k~~C~kt~l~~S~c--nDI~~~-------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss  360 (459)
T KOG0288|consen  291 QKAYCSKTVLPGSQC--NDIVCS-------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS  360 (459)
T ss_pred             hhhheeccccccccc--cceEec-------ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec
Confidence            998877766654432  222221       1357889999999999999999988887775 89999998887 488889


Q ss_pred             CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      .|.++.+.|+++....+.+...+                                                  +-+    
T Consensus       361 RDdtl~viDlRt~eI~~~~sA~g--------------------------------------------------~k~----  386 (459)
T KOG0288|consen  361 RDDTLKVIDLRTKEIRQTFSAEG--------------------------------------------------FKC----  386 (459)
T ss_pred             CCCceeeeecccccEEEEeeccc--------------------------------------------------ccc----
Confidence            99999999998866554432110                                                  000    


Q ss_pred             CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc--EEEEEeeeeeee
Q 010816          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP--VYQIRFELIYCF  416 (500)
Q Consensus       339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~  416 (500)
                                         +|  ..+.+.|||++.|+|+||.||.|+||++.++++...++.....  |+++        
T Consensus       387 -------------------as--DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~--------  437 (459)
T KOG0288|consen  387 -------------------AS--DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL--------  437 (459)
T ss_pred             -------------------cc--ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEE--------
Confidence                               11  1567899999999999999999999999999998888764433  5544        


Q ss_pred             cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEE
Q 010816          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW  456 (500)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iw  456 (500)
                                         +|+|.|..|++++.++.+.+|
T Consensus       438 -------------------~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  438 -------------------SWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             -------------------EEcCCCchhhcccCCcceEec
Confidence                               789999999999999999999

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=7.3e-27  Score=206.74  Aligned_cols=279  Identities=20%  Similarity=0.281  Sum_probs=234.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC
Q 010816          151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR  230 (500)
Q Consensus       151 ~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~  230 (500)
                      ..+.++...|....+++|+.|.++.++|..+++.. ..+.||...|+.+.++|.     ...+++++.|-.|+||.....
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-~~~~Gh~kki~~v~~~~~-----~~~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-ATLKGHTKKITSVKFHKD-----LDTVITASADEIIRVWSVPLS  293 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhh-hhccCcceEEEEEEeccc-----hhheeecCCcceEEeeccccc
Confidence            45788888887789999999999999999877654 368999999999998874     357899999999999999998


Q ss_pred             eEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeec--CCceEEEEEecCcceeeeccccCCCCCC
Q 010816          231 KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQY  307 (500)
Q Consensus       231 ~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~  307 (500)
                      .+......|..+|+.+...+.| +|++++.|++..+.|.++|..+.....  .+..+.+.+++|++              
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg--------------  359 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG--------------  359 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc--------------
Confidence            8888889999999999988876 799999999999999999988766544  34457888888873              


Q ss_pred             CCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEE
Q 010816          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (500)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lw  387 (500)
                                            ..|.+|..|+.+++||+.... ...++.+|.+.|..++|+.+|.+||+++.|+.|++|
T Consensus       360 ----------------------Lifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lw  416 (506)
T KOG0289|consen  360 ----------------------LIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLW  416 (506)
T ss_pred             ----------------------eEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEE
Confidence                                  458899999999999987554 567888999999999999999999999999999999


Q ss_pred             eCCCCceEEEEeCCc-ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC--cccc
Q 010816          388 NGTTGKFVAVFRGHV-GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT--QKLK  464 (500)
Q Consensus       388 d~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~--~~~~  464 (500)
                      |++..+.+.++.-.. .++.++                           .|.+.|++|+.++.|=.|++++-.+  ..++
T Consensus       417 DLRKl~n~kt~~l~~~~~v~s~---------------------------~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~  469 (506)
T KOG0289|consen  417 DLRKLKNFKTIQLDEKKEVNSL---------------------------SFDQSGTYLGIAGSDLQVYICKKKTKSWTEI  469 (506)
T ss_pred             EehhhcccceeeccccccceeE---------------------------EEcCCCCeEEeecceeEEEEEecccccceee
Confidence            999887766654322 233333                           5678999999999887777777544  4556


Q ss_pred             ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          465 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       465 ~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ..+..|.+..+.+.|....++++++|.|..++++-
T Consensus       470 ~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  470 KELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA  504 (506)
T ss_pred             ehhhhcccccceeeecccceEEeeccchhheEEee
Confidence            67778888899999999999999999999998863

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=5.1e-27  Score=197.83  Aligned_cols=301  Identities=23%  Similarity=0.347  Sum_probs=221.1

Q ss_pred             cCCcccEEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCc------------ee---EEecCCCCCEEEEEEcC-CCCEEEE
Q 010816          105 AGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT------------PM---FKCTGHKNWVLCIAWSA-DGKHLVS  167 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~~~~------------~~---~~~~~h~~~v~~v~~s~-~~~~l~s  167 (500)
                      .-|.+.|.++++.+. |+++++|+.||.|.+||++...            ++   ..-.+|.-.|.++.|-| |..++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            348999999999985 8999999999999999997532            11   01236888999999998 5668899


Q ss_pred             EeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 010816          168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK  247 (500)
Q Consensus       168 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~  247 (500)
                      ++.|.++++||.++-+....  ..-.+.|.+-+|+|...  ....+++|..|-.|++-|+..+.+...+.||...|.++.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~--F~me~~VYshamSp~a~--sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVD--FKMEGKVYSHAMSPMAM--SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             ccccceEEEeecccceeeEE--eecCceeehhhcChhhh--cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence            99999999999988654321  12345566777777543  224678888899999999999999999999999999999


Q ss_pred             eCCCC--eEEEEeCCCeEEEEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816          248 WGGDG--VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (500)
Q Consensus       248 ~~~~~--~l~t~~~dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (500)
                      |+|..  .|++|+.||.||+||++.. .+...+..|..                                          
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~------------------------------------------  233 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT------------------------------------------  233 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeecccceeEEeecccC------------------------------------------
Confidence            99865  5889999999999998764 33333332211                                          


Q ss_pred             cCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe---CC
Q 010816          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR---GH  401 (500)
Q Consensus       325 ~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~---~h  401 (500)
                                      .       ..+....-..|.+.|+.++|+.+|.++++.+.|..+++|+...|+....--   .|
T Consensus       234 ----------------k-------~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~  290 (397)
T KOG4283|consen  234 ----------------K-------RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIH  290 (397)
T ss_pred             ----------------c-------cCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccc
Confidence                            0       001111234678889999999999999999999999999998886421100   01


Q ss_pred             cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcC
Q 010816          402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP  481 (500)
Q Consensus       402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~  481 (500)
                      ... ....+.               .        . +.+...++---.|+.+.++++-.++.++.+.+|...|.+..+-|
T Consensus       291 n~~-~~~~~~---------------~--------~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~  345 (397)
T KOG4283|consen  291 NQT-TSFAVH---------------I--------Q-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP  345 (397)
T ss_pred             ccc-ccceEE---------------E--------e-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC
Confidence            111 000110               0        0 12222333333457788888888888888889988999999999


Q ss_pred             CCCEEEEEeCCCcEEEec
Q 010816          482 DGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       482 dg~~l~s~~~D~~v~iW~  499 (500)
                      +=+.+.+++.|+.|.-|-
T Consensus       346 ~fq~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  346 DFEQCFTGDMNGNIYMWS  363 (397)
T ss_pred             chhhhhccccCCcccccc
Confidence            999999999999999884

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=6.5e-26  Score=220.68  Aligned_cols=225  Identities=17%  Similarity=0.247  Sum_probs=175.4

Q ss_pred             EeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC--CeEEEEeCCCeEEEEeCCCCe--------eEEEeecCCceEE
Q 010816          216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGK--------LIRELKGHGHWVN  285 (500)
Q Consensus       216 ~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~~~~~--------~~~~~~~~~~~v~  285 (500)
                      |+.++.+++|+......+..+.+|...|.+++|+++  ..|++|+.|++|++||+.++.        .+..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            456778899998877788889999999999999985  479999999999999997642        2345678888999


Q ss_pred             EEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEE
Q 010816          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH  365 (500)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~  365 (500)
                      +++++|..                                   ...+++++.|++|++||+...... ..+ .|...|.+
T Consensus       130 sVaf~P~g-----------------------------------~~iLaSgS~DgtIrIWDl~tg~~~-~~i-~~~~~V~S  172 (568)
T PTZ00420        130 IIDWNPMN-----------------------------------YYIMCSSGFDSFVNIWDIENEKRA-FQI-NMPKKLSS  172 (568)
T ss_pred             EEEECCCC-----------------------------------CeEEEEEeCCCeEEEEECCCCcEE-EEE-ecCCcEEE
Confidence            99998752                                   234678999999999998765432 223 35678999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE
Q 010816          366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL  445 (500)
Q Consensus       366 l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  445 (500)
                      ++|+|+|.+|++++.|+.|+|||+++++.+..+.+|.+.+....+-                      ...|++++.+|+
T Consensus       173 lswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~----------------------~~~fs~d~~~Il  230 (568)
T PTZ00420        173 LKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW----------------------IDGLGGDDNYIL  230 (568)
T ss_pred             EEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEE----------------------eeeEcCCCCEEE
Confidence            9999999999999999999999999999999999998875443210                      013578999999


Q ss_pred             EEECCC----cEEEEECCC-cccccccc--CcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          446 SGSKDS----TLKVWDIRT-QKLKQDLP--GHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       446 s~s~d~----~v~iwd~~~-~~~~~~~~--~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +++.|+    .|+|||++. .+.+..+.  .+.+.+...-..++|.++++|+.|++|++|+
T Consensus       231 TtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e  291 (568)
T PTZ00420        231 STGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ  291 (568)
T ss_pred             EEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence            988774    799999985 44444332  2333333333456689999999999999997

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=1.5e-27  Score=212.78  Aligned_cols=244  Identities=26%  Similarity=0.475  Sum_probs=197.7

Q ss_pred             cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe----------EEEEecCccccEEEEEeCC--CCeEEEE
Q 010816          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----------CVICLSGHTLAVTCVKWGG--DGVIYTG  257 (500)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~----------~~~~~~~h~~~v~~~~~~~--~~~l~t~  257 (500)
                      ..|.+.|+.+.+.|..    ...+++++..+.|.|||..+..          .-..+.||...-..+.|+.  .+.++++
T Consensus       121 i~h~gEVnRaRymPQn----p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQN----PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             ccCCccchhhhhCCCC----CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence            3577778888777743    3478888999999999986432          1225778988777788986  4689999


Q ss_pred             eCCCeEEEEeCCCCe-------eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816          258 SQDCTIKVWETTQGK-------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (500)
                      +.|++|++||+....       ....+.+|...|..+++++-                                   ...
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-----------------------------------h~~  241 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-----------------------------------HED  241 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhcccc-----------------------------------chh
Confidence            999999999986542       23456788888888887753                                   135


Q ss_pred             EEEEeeCCCeEEEEcCCC-CCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCC-ceEEEEeCCcccEEE
Q 010816          331 RLVSGSDDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQ  407 (500)
Q Consensus       331 ~~~s~s~d~~v~~wd~~~-~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~  407 (500)
                      .|.+.+.|+.+.|||.+. ...+.....+|...|+|++|+| ++..||+||.|++|++||++.. +.+.++.+|...|.+
T Consensus       242 lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~  321 (422)
T KOG0264|consen  242 LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQ  321 (422)
T ss_pred             hheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEE
Confidence            688999999999999986 4445666789999999999999 6788999999999999999885 467899999999999


Q ss_pred             EEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCc--------------cccccccCccc
Q 010816          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQ--------------KLKQDLPGHAD  472 (500)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~--------------~~~~~~~~h~~  472 (500)
                      |                           .|||+. ..||+++.|+.+.+||+..-              +++..-.||..
T Consensus       322 V---------------------------~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~  374 (422)
T KOG0264|consen  322 V---------------------------EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA  374 (422)
T ss_pred             E---------------------------EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc
Confidence            8                           468864 68899999999999998641              23466789999


Q ss_pred             CEEEEEEcCCCCE-EEEEeCCCcEEEec
Q 010816          473 EVFAVDWSPDGEK-VASGGKDRVLKLWM  499 (500)
Q Consensus       473 ~V~~l~~s~dg~~-l~s~~~D~~v~iW~  499 (500)
                      .|..++|+|...+ |+|++.|+.+.||+
T Consensus       375 kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  375 KVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             ccccccCCCCCCeEEEEecCCceEEEee
Confidence            9999999999877 56899999999996

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2.7e-26  Score=190.95  Aligned_cols=246  Identities=22%  Similarity=0.337  Sum_probs=190.4

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC-----CCeEE
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-----AGELQ  175 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-----d~~i~  175 (500)
                      ..++.||++.|+||+++-+.++|+||+.|.++++||+++++++..++ ...+|..+.|+++|++++.+..     .+.|.
T Consensus        45 lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~  123 (327)
T KOG0643|consen   45 LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVS  123 (327)
T ss_pred             eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEE
Confidence            35788999999999999999999999999999999999999998876 4678999999999998776543     46799


Q ss_pred             EEeCCCCC------cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe-EEEEecCccccEEEEEe
Q 010816          176 CWDPQTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCVKW  248 (500)
Q Consensus       176 ~wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~-~~~~~~~h~~~v~~~~~  248 (500)
                      ++|++...      .....+..+...++.+-|.|..     ..+++|..||.|.+||+++++ .+..-..|...|+.+.+
T Consensus       124 ~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-----~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~  198 (327)
T KOG0643|consen  124 VFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-----ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF  198 (327)
T ss_pred             EEEccCChhhhcccCceEEecCCccceeeeeecccC-----CEEEEecCCCcEEEEEcccCceeeechhhhccccccccc
Confidence            99987332      1112345566788888898853     579999999999999999975 44555779999999999


Q ss_pred             CCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816          249 GGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (500)
Q Consensus       249 ~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (500)
                      +++. .+++++.|.+-++||.++-..++++. ...+|++.+++|..                                  
T Consensus       199 s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~----------------------------------  243 (327)
T KOG0643|consen  199 SRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLL----------------------------------  243 (327)
T ss_pred             cCCcceEEecccCccceeeeccceeeEEEee-ecccccceeccccc----------------------------------
Confidence            9987 58899999999999999988888775 45678888887742                                  


Q ss_pred             CCcEEEEeeC-CC-------------eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816          328 APERLVSGSD-DF-------------TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (500)
Q Consensus       328 ~~~~~~s~s~-d~-------------~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~  390 (500)
                        +.++.|+. +.             .-++++... .....+..+|-++|++|+|+|+|+..++|+.||.||+.-..
T Consensus       244 --d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~-eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  244 --DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF-EEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             --ceEEecCCceeeeeeeecccccchhhhHHHHHH-HHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence              11222111 11             111122111 11234568999999999999999999999999999997543

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=5.5e-26  Score=220.36  Aligned_cols=265  Identities=17%  Similarity=0.264  Sum_probs=196.7

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------CCccc--ccccCcccceEEEEeeeeecCCCCceEEEEeC
Q 010816          151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQT----------GKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (500)
Q Consensus       151 ~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~----------~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~  218 (500)
                      ..|.....++++..+++++.+.....|+...          |+...  ..+.+|...|.++.|+|..    ..++++|+.
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d----~~~LaSgS~   96 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD----PQKLFTASE   96 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCC----CCEEEEEeC
Confidence            3455555666766667777666666776432          22111  2367899999999998842    358999999


Q ss_pred             CCcEEEEECCCC-------eEEEEecCccccEEEEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEe
Q 010816          219 DGDARIWDVSLR-------KCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL  289 (500)
Q Consensus       219 dg~v~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~  289 (500)
                      |++|++||+..+       ..+..+.+|...|.++.|+++  +.|++|+.|++|++||+.+++.+..+..|...|.++++
T Consensus        97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~  176 (493)
T PTZ00421         97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW  176 (493)
T ss_pred             CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence            999999999764       356778999999999999986  47999999999999999999998899999999999999


Q ss_pred             cCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCc-EEEEEE
Q 010816          290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL-VNHVYF  368 (500)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~-v~~l~~  368 (500)
                      +++                                    +..+++++.|++|++||++... ....+.+|... +..+.|
T Consensus       177 spd------------------------------------G~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~~w  219 (493)
T PTZ00421        177 NLD------------------------------------GSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRCLW  219 (493)
T ss_pred             ECC------------------------------------CCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEEEE
Confidence            875                                    3578999999999999987654 34556778654 456788


Q ss_pred             CCCCCEEEEEe----CCCcEEEEeCCCCc-eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816          369 SPDGQWVASAS----FDKSIKLWNGTTGK-FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL  443 (500)
Q Consensus       369 sp~g~~lasgs----~Dg~i~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  443 (500)
                      .+++..+++++    .|+.|++||+++.. .+.....+...                          ......|++++.+
T Consensus       220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~--------------------------~~~~~~~d~d~~~  273 (493)
T PTZ00421        220 AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS--------------------------ALFIPFFDEDTNL  273 (493)
T ss_pred             cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC--------------------------ceEEEEEcCCCCE
Confidence            99887777654    47999999998654 22222222111                          1112257899999


Q ss_pred             EEEEE-CCCcEEEEECCCccccccccC-cccCEEEEEEcCC
Q 010816          444 LLSGS-KDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPD  482 (500)
Q Consensus       444 l~s~s-~d~~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~d  482 (500)
                      |++|+ .|+.|++||+..++....... +...+.+++|.|.
T Consensus       274 L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        274 LYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            99887 599999999998877654433 3445667777774

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-27  Score=222.14  Aligned_cols=271  Identities=22%  Similarity=0.425  Sum_probs=208.7

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCCc-----ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC--eE
Q 010816          160 ADGKHLVSGSKAGELQCWDPQTGKP-----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KC  232 (500)
Q Consensus       160 ~~~~~l~s~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~--~~  232 (500)
                      |++++|++||.||.|++|+...-..     -...+..|.++|+.+...-     .++.|+++|.|.+|++|+...+  -|
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-----~~~tlIS~SsDtTVK~W~~~~~~~~c  109 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-----NGKTLISASSDTTVKVWNAHKDNTFC  109 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-----CCCceEEecCCceEEEeecccCcchh
Confidence            4677899999999999998754322     1234678999998876432     3458999999999999999877  68


Q ss_pred             EEEecCccccEEEEEe-CCCC-eEEEEeCCCeEEEEeCCCCe--eEEEe--------e-cCCceEEEEEecCcceeeecc
Q 010816          233 VICLSGHTLAVTCVKW-GGDG-VIYTGSQDCTIKVWETTQGK--LIREL--------K-GHGHWVNSLALSTEYALRTGA  299 (500)
Q Consensus       233 ~~~~~~h~~~v~~~~~-~~~~-~l~t~~~dg~i~lwd~~~~~--~~~~~--------~-~~~~~v~~~~~~~~~~~~~~~  299 (500)
                      +.+++.|...|.|+++ .++. .+++||-|+.|.+||+.+|.  .+..+        . ++...|.+++..+.       
T Consensus       110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t-------  182 (735)
T KOG0308|consen  110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT-------  182 (735)
T ss_pred             HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc-------
Confidence            8889999999999999 5544 67889999999999998873  22221        1 33344444443322       


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe
Q 010816          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (500)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs  379 (500)
                                                   +..+++|+..+.+++||++..+. ..++.||++.|.++-.++||+.++++|
T Consensus       183 -----------------------------~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~s  232 (735)
T KOG0308|consen  183 -----------------------------GTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSAS  232 (735)
T ss_pred             -----------------------------ceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEeecC
Confidence                                         34689999999999999886554 456779999999999999999999999


Q ss_pred             CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       380 ~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                      .||+|++||+...+|+.++..|...++++..                           +|+-..+++|+.||.|..=|++
T Consensus       233 SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~---------------------------~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  233 SDGTIRLWDLGQQRCLATYIVHKEGVWALQS---------------------------SPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             CCceEEeeeccccceeeeEEeccCceEEEee---------------------------CCCcceEEecCCCCcEEecccC
Confidence            9999999999999999999999998988854                           5677899999999999999998


Q ss_pred             CccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          460 TQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       460 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +.....-+-....+|..+..+.+.+-+=+++.|+.|+-|.
T Consensus       286 n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~  325 (735)
T KOG0308|consen  286 NPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK  325 (735)
T ss_pred             CchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence            8433222222334555555554444445667777788775

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.5e-27  Score=217.45  Aligned_cols=239  Identities=23%  Similarity=0.386  Sum_probs=198.6

Q ss_pred             EEEEc-CCCCeEEEEeCCCcEEEEeCCCCc------eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-c
Q 010816          113 SVAFS-PDGRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-P  184 (500)
Q Consensus       113 ~~~~s-p~~~~lat~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~-~  184 (500)
                      .+..+ |.+++|+|||.||.|++|+.....      ....+..|.++|..+....+|+.|+|+|.|-+|++|+...+. .
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            44444 456789999999999999975321      256778899999999999999999999999999999998764 2


Q ss_pred             ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE--E--------EEec-CccccEEEEEeCCCCe
Q 010816          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC--V--------ICLS-GHTLAVTCVKWGGDGV  253 (500)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~--~--------~~~~-~h~~~v~~~~~~~~~~  253 (500)
                      ....+..|++.|.+++.-    ..+...+++||-|+.|.+||++++..  +        ..+. |+..+|.+++-++.+.
T Consensus       109 c~stir~H~DYVkcla~~----ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t  184 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYI----AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT  184 (735)
T ss_pred             hHhhhhcccchheeeeec----ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce
Confidence            234578899999999863    22445899999999999999987622  1        1223 7888999999988875


Q ss_pred             -EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816          254 -IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (500)
Q Consensus       254 -l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (500)
                       |++|+..+.+++||.++++.+..+++|..-|+.+.++.+                                    +.++
T Consensus       185 ~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD------------------------------------Gt~~  228 (735)
T KOG0308|consen  185 IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD------------------------------------GTRL  228 (735)
T ss_pred             EEEecCcccceEEeccccccceeeeeccccceEEEEEcCC------------------------------------CCeE
Confidence             677999999999999999999999999999999988765                                    4579


Q ss_pred             EEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (500)
Q Consensus       333 ~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~  392 (500)
                      +++|.||+|++||+...+ ....+..|.+.|+++..+|+-.++.+|+.||.|..=|+++-
T Consensus       229 ls~sSDgtIrlWdLgqQr-Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  229 LSASSDGTIRLWDLGQQR-CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eecCCCceEEeeeccccc-eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            999999999999986543 44557889999999999999999999999999999998873

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=7.8e-27  Score=214.41  Aligned_cols=298  Identities=23%  Similarity=0.383  Sum_probs=226.0

Q ss_pred             ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCC--EEEEEeCCCeEE
Q 010816           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGELQ  175 (500)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--~l~s~~~d~~i~  175 (500)
                      ..|...+.||++.|.+|..+|.|.+||+|+.||+|+||.+.++.++..+. ..+.|.||+|+|.++  .||++ ....+.
T Consensus       390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~~  467 (733)
T KOG0650|consen  390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECVL  467 (733)
T ss_pred             ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCceE
Confidence            34666789999999999999999999999999999999999999998765 355799999999765  34443 333355


Q ss_pred             EEeCCCCCccc------------------------------------ccccCcccceEEEEeeeeecCCCCceEEEEeC-
Q 010816          176 CWDPQTGKPSG------------------------------------NPLSGHKKWITGISWEPVHLNAPCRRFVSASK-  218 (500)
Q Consensus       176 ~wd~~~~~~~~------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~-  218 (500)
                      +-+..-|..+.                                    ...-.|...|.++.|+.     .+.+|++... 
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-----kGDYlatV~~~  542 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-----KGDYLATVMPD  542 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-----CCceEEEeccC
Confidence            55543221000                                    01123556677777764     4567776544 


Q ss_pred             --CCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816          219 --DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (500)
Q Consensus       219 --dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (500)
                        ...|.|.++..++...-|+...+.|.++.|.|.. +++.+ ....||+||+..+..++.+.....+|..+++++.   
T Consensus       543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~---  618 (733)
T KOG0650|consen  543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN---  618 (733)
T ss_pred             CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-eccceEEEehhHHHHHHHHhcCCeeeeeeeecCC---
Confidence              4588899998777666666666778999999865 44444 4578999999988888888778889999988874   


Q ss_pred             eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE
Q 010816          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV  375 (500)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l  375 (500)
                                                       ++.++.|+.|+.+..+|+.....+...+.-|...+++|+|++.-.++
T Consensus       619 ---------------------------------GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLf  665 (733)
T KOG0650|consen  619 ---------------------------------GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLF  665 (733)
T ss_pred             ---------------------------------CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccccee
Confidence                                             56799999999999999988888888899999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEE
Q 010816          376 ASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (500)
Q Consensus       376 asgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~i  455 (500)
                      |+|+.||++.|+...              |+.=                            +- .+-++           
T Consensus       666 as~sdDgtv~Vfhg~--------------VY~D----------------------------l~-qnpli-----------  691 (733)
T KOG0650|consen  666 ASGSDDGTVIVFHGM--------------VYND----------------------------LL-QNPLI-----------  691 (733)
T ss_pred             eeecCCCcEEEEeee--------------eehh----------------------------hh-cCCce-----------
Confidence            999999999988421              1100                            00 00011           


Q ss_pred             EECCCccccccccCcccC----EEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          456 WDIRTQKLKQDLPGHADE----VFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       456 wd~~~~~~~~~~~~h~~~----V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                            -.++.++||...    |..+.|+|...||+++|+||+|++|.
T Consensus       692 ------VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  692 ------VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             ------EeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence                  123556777654    89999999999999999999999994

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.8e-25  Score=189.75  Aligned_cols=261  Identities=22%  Similarity=0.409  Sum_probs=189.0

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~~wd  178 (500)
                      .+|.+-|.++.|++.|+++|||+.|++|+|||.+...    +....+.|.+.|..|.|.+  -|+.+|+|+.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            6899999999999999999999999999999975443    3345568999999999975  489999999999999997


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC---eEE
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIY  255 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~  255 (500)
                      -...+     ..+|.     ..|.                             ...++......|+++.|.|..   .++
T Consensus        90 E~~~~-----~~~~~-----~~Wv-----------------------------~~ttl~DsrssV~DV~FaP~hlGLklA  130 (361)
T KOG2445|consen   90 EQEKS-----EEAHG-----RRWV-----------------------------RRTTLVDSRSSVTDVKFAPKHLGLKLA  130 (361)
T ss_pred             ecccc-----ccccc-----ceeE-----------------------------EEEEeecCCcceeEEEecchhcceEEE
Confidence            53211     11221     1111                             111233445678889998753   488


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  335 (500)
                      +++.||.+|||+......+..                                                           
T Consensus       131 ~~~aDG~lRIYEA~dp~nLs~-----------------------------------------------------------  151 (361)
T KOG2445|consen  131 AASADGILRIYEAPDPMNLSQ-----------------------------------------------------------  151 (361)
T ss_pred             EeccCcEEEEEecCCcccccc-----------------------------------------------------------
Confidence            999999999998754322211                                                           


Q ss_pred             eCCCeEEEEcCCCCCC-CceeeecccCcEEEEEECCC---CCEEEEEeCC-----CcEEEEeCCCCc----eEEEEeCCc
Q 010816          336 SDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPD---GQWVASASFD-----KSIKLWNGTTGK----FVAVFRGHV  402 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~-~~~~~~~h~~~v~~l~~sp~---g~~lasgs~D-----g~i~lwd~~~~~----~~~~~~~h~  402 (500)
                              |.+....+ .......+.....||.|+|.   ..+||.|+.+     +.++||....+.    .+..+.+|.
T Consensus       152 --------W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~  223 (361)
T KOG2445|consen  152 --------WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT  223 (361)
T ss_pred             --------chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence                    11110000 00011223445678888873   5789998877     578999766532    356678899


Q ss_pred             ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC----CCEEEEEECCCcEEEEECCCc-----------------
Q 010816          403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD----SRLLLSGSKDSTLKVWDIRTQ-----------------  461 (500)
Q Consensus       403 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~s~s~d~~v~iwd~~~~-----------------  461 (500)
                      .+|+.+.|                           .|+    -.+||+|+.|| |+||+++..                 
T Consensus       224 dpI~di~w---------------------------APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~  275 (361)
T KOG2445|consen  224 DPIRDISW---------------------------APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTD  275 (361)
T ss_pred             Ccceeeee---------------------------ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccc
Confidence            99998854                           554    35899999999 999998741                 


Q ss_pred             ---cccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          462 ---KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       462 ---~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                         +.+..+.+|+++|+.+.|+-.|..|+|.|.||.||+|.
T Consensus       276 l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  276 LPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             cceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence               12345788999999999999999999999999999996

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.4e-26  Score=197.02  Aligned_cols=252  Identities=29%  Similarity=0.487  Sum_probs=202.3

Q ss_pred             cccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeC------CC-------------------------------
Q 010816           97 VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL------NT-------------------------------  139 (500)
Q Consensus        97 ~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~------~~-------------------------------  139 (500)
                      .+.|..++.||.+.|.+++|++.+.+++|+++|++..||..      ..                               
T Consensus       179 sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~  258 (481)
T KOG0300|consen  179 SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDG  258 (481)
T ss_pred             cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCC
Confidence            35789999999999999999999999999999999999962      10                               


Q ss_pred             ---CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEE
Q 010816          140 ---QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA  216 (500)
Q Consensus       140 ---~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~  216 (500)
                         ..|+..+++|...|.+..|-..|+.+++++.|.+..+||+++|..+ .++.||....+.++-+|     ..+.++++
T Consensus       259 ~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v-~~LtGHd~ELtHcstHp-----tQrLVvTs  332 (481)
T KOG0300|consen  259 HTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV-NILTGHDSELTHCSTHP-----TQRLVVTS  332 (481)
T ss_pred             ceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee-ccccCcchhccccccCC-----cceEEEEe
Confidence               0245678899999999999999999999999999999999999865 47899999888776554     44678899


Q ss_pred             eCCCcEEEEECCCC-eEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcce
Q 010816          217 SKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYA  294 (500)
Q Consensus       217 s~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~  294 (500)
                      |.|.+.++||.+.. ..+..|.||+..|+++.|..+..+++|+.|.+|++||+++-+ .+.++. ...+++.++++..  
T Consensus       333 SrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g--  409 (481)
T KOG0300|consen  333 SRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKG--  409 (481)
T ss_pred             ccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecC--
Confidence            99999999999854 457789999999999999999999999999999999997643 333333 2344555554432  


Q ss_pred             eeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC---CCceeeecccCcEEEEEECCC
Q 010816          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSPD  371 (500)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~---~~~~~~~~h~~~v~~l~~sp~  371 (500)
                                                        ...++.-.+++.|++||+....   .|...-.+|...|.|++|..+
T Consensus       410 ----------------------------------~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee  455 (481)
T KOG0300|consen  410 ----------------------------------HPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE  455 (481)
T ss_pred             ----------------------------------CceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence                                              1245666677889999975432   234445789999999999854


Q ss_pred             C--CEEEEEeCCCcEEEEeCCC
Q 010816          372 G--QWVASASFDKSIKLWNGTT  391 (500)
Q Consensus       372 g--~~lasgs~Dg~i~lwd~~~  391 (500)
                      -  .-|.+++.|+.+.-|++..
T Consensus       456 hp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  456 HPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             CcccccccccccceeeeeEecc
Confidence            3  4578899999999998754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.1e-26  Score=190.89  Aligned_cols=244  Identities=23%  Similarity=0.386  Sum_probs=186.0

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc--ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE
Q 010816          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (500)
Q Consensus       147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i  224 (500)
                      ..|++.|..+...--|++||+|+.|++|+|+..+....  ....+.||.++|..+.|-...   -+..+++++.||.|.|
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk---~G~iLAScsYDgkVIi   84 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK---FGTILASCSYDGKVII   84 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc---cCcEeeEeecCceEEE
Confidence            46888888877777799999999999999999876542  334689999999999996432   2468999999999999


Q ss_pred             EECCCCe--EEEEecCccccEEEEEeCCCC---eEEEEeCCCeEEEEeCCCC-ee--EEEeecCCceEEEEEecCcceee
Q 010816          225 WDVSLRK--CVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQG-KL--IRELKGHGHWVNSLALSTEYALR  296 (500)
Q Consensus       225 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~---~l~t~~~dg~i~lwd~~~~-~~--~~~~~~~~~~v~~~~~~~~~~~~  296 (500)
                      |.-+.++  .......|...|++++|.|.+   .|++++.||.|.+.+.+.. ..  .+...                  
T Consensus        85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~------------------  146 (299)
T KOG1332|consen   85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF------------------  146 (299)
T ss_pred             EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh------------------
Confidence            9988773  344566899999999999876   4888999999999876542 11  11122                  


Q ss_pred             eccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC---C-
Q 010816          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD---G-  372 (500)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~---g-  372 (500)
                                                                                   .|.-.|++++|.|-   | 
T Consensus       147 -------------------------------------------------------------aH~~GvnsVswapa~~~g~  165 (299)
T KOG1332|consen  147 -------------------------------------------------------------AHEIGVNSVSWAPASAPGS  165 (299)
T ss_pred             -------------------------------------------------------------ccccccceeeecCcCCCcc
Confidence                                                                         33333444444432   2 


Q ss_pred             ----------CEEEEEeCCCcEEEEeCCCCce--EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816          373 ----------QWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (500)
Q Consensus       373 ----------~~lasgs~Dg~i~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  440 (500)
                                +.|++|+.|..|+||+...++.  -.+|++|.+.|..+                           +|.|.
T Consensus       166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDV---------------------------AwaP~  218 (299)
T KOG1332|consen  166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDV---------------------------AWAPS  218 (299)
T ss_pred             ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhh---------------------------hhccc
Confidence                      5699999999999999988743  35689999998887                           45555


Q ss_pred             C----CEEEEEECCCcEEEEECCCc--ccc-ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          441 S----RLLLSGSKDSTLKVWDIRTQ--KLK-QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       441 ~----~~l~s~s~d~~v~iwd~~~~--~~~-~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      -    ..||++|.||+|.||.....  +.. ..+....+.++.++||+.|+.|+.++.|+.|.+|.
T Consensus       219 ~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  219 VGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             cCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            3    58999999999999976521  111 12233457899999999999999999999999995

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.7e-26  Score=218.37  Aligned_cols=277  Identities=20%  Similarity=0.385  Sum_probs=210.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc-c-cc----ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEE
Q 010816          153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS-G-NP----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD  226 (500)
Q Consensus       153 v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~-~-~~----~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd  226 (500)
                      ...++.+++-..|+.++. ..++++........ . ..    ...-......+.|...    ....+++++..|.|.+||
T Consensus        42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~----~~NlIAT~s~nG~i~vWd  116 (839)
T KOG0269|consen   42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL----YSNLIATCSTNGVISVWD  116 (839)
T ss_pred             cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccc----hhhhheeecCCCcEEEEe
Confidence            455666677777777664 35666654322110 0 00    0000112345667632    345799999999999999


Q ss_pred             CCC---CeEEEEecCccccEEEEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816          227 VSL---RKCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (500)
Q Consensus       227 ~~~---~~~~~~~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (500)
                      +..   .+.+..|..|...++++.|++-  .+|++|++||+|++||++..+...++.+....|+.+.++|.+        
T Consensus       117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~--------  188 (839)
T KOG0269|consen  117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY--------  188 (839)
T ss_pred             cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC--------
Confidence            987   5677788999999999999863  589999999999999999988888888888888888888752        


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC
Q 010816          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (500)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D  381 (500)
                                                 +..|+++.+.|.+++||++.......++.+|.+.|.|+.|+|++.+|||||.|
T Consensus       189 ---------------------------~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD  241 (839)
T KOG0269|consen  189 ---------------------------GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD  241 (839)
T ss_pred             ---------------------------CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC
Confidence                                       46799999999999999999888888999999999999999999999999999


Q ss_pred             CcEEEEeCCCCceEEEEeCC-cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE--CCCcEEEEE
Q 010816          382 KSIKLWNGTTGKFVAVFRGH-VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS--KDSTLKVWD  457 (500)
Q Consensus       382 g~i~lwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s--~d~~v~iwd  457 (500)
                      +.|+|||..+++......-+ ..++.++                           .|-|+.+ +||+++  .|..|+|||
T Consensus       242 K~vkiWd~t~~~~~~~~tInTiapv~rV---------------------------kWRP~~~~hLAtcsmv~dtsV~VWD  294 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTINTIAPVGRV---------------------------KWRPARSYHLATCSMVVDTSVHVWD  294 (839)
T ss_pred             ccEEEEeccCCCccceeEEeecceeeee---------------------------eeccCccchhhhhhccccceEEEEe
Confidence            99999999876543222211 2344444                           5677654 566665  478999999


Q ss_pred             CCCccc-cccccCcccCEEEEEEcC-CCCEEEEEeCCCcEE
Q 010816          458 IRTQKL-KQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLK  496 (500)
Q Consensus       458 ~~~~~~-~~~~~~h~~~V~~l~~s~-dg~~l~s~~~D~~v~  496 (500)
                      ++..-. ...+..|.+.|+.++|-. |...|-+++.|++|.
T Consensus       295 vrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  295 VRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             eccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            986543 456778999999999954 567789999999864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.5e-24  Score=185.36  Aligned_cols=241  Identities=20%  Similarity=0.271  Sum_probs=185.6

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeC--CCcEE
Q 010816          146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDAR  223 (500)
Q Consensus       146 ~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~--dg~v~  223 (500)
                      +......|.++.|+++|.+|++++.|.+++|||..+|+... .+..++..+..+.|...     ...++.++.  |.+||
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~-ti~skkyG~~~~~Fth~-----~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK-TINSKKYGVDLACFTHH-----SNTVIHSSTKEDDTIR   83 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee-EeecccccccEEEEecC-----CceEEEccCCCCCceE
Confidence            33456789999999999999999999999999999998654 34445555666665432     224555554  88999


Q ss_pred             EEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816          224 IWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (500)
Q Consensus       224 iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (500)
                      ..++.+.+.+..|.||...|.++..+| +..+++++.|++||+||++..++...+..                       
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-----------------------  140 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-----------------------  140 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-----------------------
Confidence            999999999999999999999999987 45789999999999999885443221110                       


Q ss_pred             CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC
Q 010816          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (500)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg  382 (500)
                                                                                ..-...+|+|.|-++|++....
T Consensus       141 ----------------------------------------------------------~~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen  141 ----------------------------------------------------------SGRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             ----------------------------------------------------------CCCcceeECCCCcEEEEecCCC
Confidence                                                                      0012468999999999998888


Q ss_pred             cEEEEeCCCC--ceEEEEe---CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816          383 SIKLWNGTTG--KFVAVFR---GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD  457 (500)
Q Consensus       383 ~i~lwd~~~~--~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd  457 (500)
                      .|++||++.-  ....++.   +.....                           ..+.|||||++++.+...+.+++.|
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew---------------------------~~l~FS~dGK~iLlsT~~s~~~~lD  215 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEW---------------------------TDLEFSPDGKSILLSTNASFIYLLD  215 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccce---------------------------eeeEEcCCCCEEEEEeCCCcEEEEE
Confidence            9999998752  2222221   112222                           3346799999999999999999999


Q ss_pred             CCCccccccccCcccCE---EEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          458 IRTQKLKQDLPGHADEV---FAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       458 ~~~~~~~~~~~~h~~~V---~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      .-+|..+..+.++...-   ....|+||++++.+|+.||+|.+|+.
T Consensus       216 Af~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  216 AFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             ccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence            99999888887775432   57889999999999999999999974

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=4.7e-26  Score=203.30  Aligned_cols=246  Identities=23%  Similarity=0.419  Sum_probs=201.4

Q ss_pred             CCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCC----------ceeEEecCCCCCEEEEEEcCCC-CEEEEEeCCCe
Q 010816          106 GHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQ----------TPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGE  173 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~  173 (500)
                      -|.+.|..+..-|+.. .+|+++..+.|.|||..+.          .+-..+.||.+.=..++|++.. ..|++++.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            4888999999999765 5677788999999998642          2334788999877889999853 58999999999


Q ss_pred             EEEEeCCCCCc------ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC--CCeEEEEecCccccEEE
Q 010816          174 LQCWDPQTGKP------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--LRKCVICLSGHTLAVTC  245 (500)
Q Consensus       174 i~~wd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~--~~~~~~~~~~h~~~v~~  245 (500)
                      |++||+.....      ....+.+|...|..++|++.+.    ..|++++.|+.+.|||++  +.++.....+|...|.|
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~----~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~  277 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE----DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC  277 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccch----hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence            99999875433      1234689999999999999754    479999999999999999  56666777899999999


Q ss_pred             EEeCCC--CeEEEEeCCCeEEEEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816          246 VKWGGD--GVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (500)
Q Consensus       246 ~~~~~~--~~l~t~~~dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (500)
                      ++|+|-  ..|+||+.|++|+|||+|+- +.+..+.+|...|..+.++|..                             
T Consensus       278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~-----------------------------  328 (422)
T KOG0264|consen  278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN-----------------------------  328 (422)
T ss_pred             EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC-----------------------------
Confidence            999874  47899999999999999875 4578889999999999999853                             


Q ss_pred             hhcCCCCcEEEEeeCCCeEEEEcCCCCCCC-------------ceeeecccCcEEEEEECCCCC-EEEEEeCCCcEEEEe
Q 010816          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQP-------------KTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWN  388 (500)
Q Consensus       323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~-------------~~~~~~h~~~v~~l~~sp~g~-~lasgs~Dg~i~lwd  388 (500)
                            ...+++++.|+.+.+||+..-...             ...-.||...|..++|+|+.. .+++.+.|+.+.||+
T Consensus       329 ------etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  329 ------ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             ------CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence                  346899999999999997532211             123468999999999999875 567889999999998


Q ss_pred             CC
Q 010816          389 GT  390 (500)
Q Consensus       389 ~~  390 (500)
                      ..
T Consensus       403 ~s  404 (422)
T KOG0264|consen  403 MA  404 (422)
T ss_pred             cc
Confidence            74

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=6.6e-26  Score=204.14  Aligned_cols=280  Identities=20%  Similarity=0.426  Sum_probs=218.1

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---ceeEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~---~~~~~~--~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      ..|.+-|.++.+|...+++.||+ .|.|+|||+...   .++..+  ....+.|.++...|||+.|++|+.-.++.|||+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            36889999999999999999985 567999999643   333333  345678999999999999999999999999999


Q ss_pred             CCCCcc-cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEE
Q 010816          180 QTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTG  257 (500)
Q Consensus       180 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~  257 (500)
                      ...... +..+...--...+++     .+.+.+..+++..||.|.|||+.+...+..|.||+..+.|+..+.||+ |.||
T Consensus       495 AapTprikaeltssapaCyALa-----~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG  569 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALA-----ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG  569 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhh-----cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecC
Confidence            765421 111111111112222     344667888999999999999999999999999999999999999985 8999


Q ss_pred             eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      +-|++||-||+++++.++...                                                           
T Consensus       570 GlDntvRcWDlregrqlqqhd-----------------------------------------------------------  590 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGRQLQQHD-----------------------------------------------------------  590 (705)
T ss_pred             CCccceeehhhhhhhhhhhhh-----------------------------------------------------------
Confidence            999999999998876432110                                                           


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                                           ....|.++.++|++.+||.|-..+.+.|......+ ...+.-|+.-|.+++        
T Consensus       591 ---------------------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlK--------  640 (705)
T KOG0639|consen  591 ---------------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLK--------  640 (705)
T ss_pred             ---------------------hhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEE--------
Confidence                                 11346678889999999999999998888764332 333445666566654        


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  497 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i  497 (500)
                                         |++-|+++++.+.|+.+..|.+--+..+...+ ..+.|++++.|-|.++++|||.|+...+
T Consensus       641 -------------------Fa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATV  700 (705)
T KOG0639|consen  641 -------------------FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATV  700 (705)
T ss_pred             -------------------ecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEE
Confidence                               57899999999999999999988777666554 4578999999999999999999988877


Q ss_pred             ec
Q 010816          498 WM  499 (500)
Q Consensus       498 W~  499 (500)
                      |+
T Consensus       701 Ye  702 (705)
T KOG0639|consen  701 YE  702 (705)
T ss_pred             EE
Confidence            75

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.3e-25  Score=220.69  Aligned_cols=268  Identities=26%  Similarity=0.365  Sum_probs=203.9

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC----------C--------ceeEEecCCCCCEEEEEEcCC
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----------Q--------TPMFKCTGHKNWVLCIAWSAD  161 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~----------~--------~~~~~~~~h~~~v~~v~~s~~  161 (500)
                      ...+...|.+.|.|+.|+|||++||+|++|+.|.||+...          +        +....+.+|...|..+.|+|+
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~  140 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD  140 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence            3446678999999999999999999999999999998762          0        245567899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc-
Q 010816          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-  240 (500)
Q Consensus       162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~-  240 (500)
                      +.+|++++.|++|.+||..+.+ ....+.+|...|-++.|.|.     +++|++-+.|+++++|+.....+...+.++. 
T Consensus       141 ~~~lvS~s~DnsViiwn~~tF~-~~~vl~~H~s~VKGvs~DP~-----Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~  214 (942)
T KOG0973|consen  141 DSLLVSVSLDNSVIIWNAKTFE-LLKVLRGHQSLVKGVSWDPI-----GKYFASQSDDRTLKVWRTSDWGIEKSITKPFE  214 (942)
T ss_pred             ccEEEEecccceEEEEccccce-eeeeeecccccccceEECCc-----cCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence            9999999999999999999984 44568999999999999984     4689999999999999987766665555442 


Q ss_pred             -----ccEEEEEeCCCCeEEEEe-----CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCH
Q 010816          241 -----LAVTCVKWGGDGVIYTGS-----QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (500)
Q Consensus       241 -----~~v~~~~~~~~~~l~t~~-----~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (500)
                           .....+.|+|||.+++..     .-.++.|.+..+-+.-..+-+|..++.++.++|...-.... +.......  
T Consensus       215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~-ng~~~~~~--  291 (942)
T KOG0973|consen  215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK-NGTSTQPN--  291 (942)
T ss_pred             hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc-cCCccCCC--
Confidence                 346788999999644322     23468888766656667888999999999998752110000 00000000  


Q ss_pred             HHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (500)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~  390 (500)
                                      ..-..+++||.|++|.+|.....+.......--...|..++|+|||..|..+|.||+|.+...+
T Consensus       292 ----------------~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  292 ----------------CYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             ----------------cceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence                            0012578999999999998654433222112224679999999999999999999999999877


Q ss_pred             CC
Q 010816          391 TG  392 (500)
Q Consensus       391 ~~  392 (500)
                      ..
T Consensus       356 e~  357 (942)
T KOG0973|consen  356 EK  357 (942)
T ss_pred             hH
Confidence            53

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.7e-25  Score=187.82  Aligned_cols=241  Identities=21%  Similarity=0.370  Sum_probs=189.6

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEeCC
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--~l~s~~~d~~i~~wd~~  180 (500)
                      .+..|.++|++++.  ++.++|+||.|-+|+|||+.....+..+..|.+.|+++.|.++-.  .|++|+.||.|.+|+..
T Consensus        38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            45789999999998  789999999999999999999888888889999999999998765  89999999999999987


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeC
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQ  259 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~  259 (500)
                      .-... ..+.+|...|+.++-+|     .++.-++.+.|+.+++||+-+++.-+.++-.+. -+.+.|++.|. ++.++.
T Consensus       116 ~W~~~-~slK~H~~~Vt~lsiHP-----S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  116 SWELL-KSLKAHKGQVTDLSIHP-----SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             CeEEe-eeecccccccceeEecC-----CCceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEec
Confidence            65443 35789999999998776     345667889999999999988776554432211 23388998875 555554


Q ss_pred             CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (500)
Q Consensus       260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~  339 (500)
                       +.|-+|.+.+......+... ..+.++.+.                                     ....+++|.+|+
T Consensus       189 -~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-------------------------------------~~~~L~vG~d~~  229 (362)
T KOG0294|consen  189 -NKIDIYQLDNASVFREIENP-KRILCATFL-------------------------------------DGSELLVGGDNE  229 (362)
T ss_pred             -cEEEEEecccHhHhhhhhcc-ccceeeeec-------------------------------------CCceEEEecCCc
Confidence             56888988776555443322 112222211                                     245789999999


Q ss_pred             eEEEEcCCCCCCCceeeecccCcEEEEEE--CCCCCEEEEEeCCCcEEEEeCCCC
Q 010816          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYF--SPDGQWVASASFDKSIKLWNGTTG  392 (500)
Q Consensus       340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~--sp~g~~lasgs~Dg~i~lwd~~~~  392 (500)
                      .|.+||... ..+...+.+|+.+|..+.+  .|++.+|+++|.||.|++||++..
T Consensus       230 ~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  230 WISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEeccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            999999654 5667788999999999884  568899999999999999998765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=3.5e-26  Score=194.08  Aligned_cols=254  Identities=24%  Similarity=0.404  Sum_probs=198.2

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w  177 (500)
                      ..++|..|.+.|.++.|+|....|++|+.|++|+++|.........+  -....+|.+++|+|.|++|+.|..-.++++|
T Consensus       164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY  243 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY  243 (430)
T ss_pred             eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence            45788899999999999999999999999999999998653221111  1235689999999999999999999999999


Q ss_pred             eCCCCCcc--cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-Ccc-ccEEEEEeCCCC-
Q 010816          178 DPQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHT-LAVTCVKWGGDG-  252 (500)
Q Consensus       178 d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~-~~v~~~~~~~~~-  252 (500)
                      |+++-++.  ..+-.+|++.|+++.+++     .+..++++|.||.|++||--.++|+.++. .|. ..|.+..|..++ 
T Consensus       244 dv~T~QcfvsanPd~qht~ai~~V~Ys~-----t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k  318 (430)
T KOG0640|consen  244 DVNTYQCFVSANPDDQHTGAITQVRYSS-----TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK  318 (430)
T ss_pred             eccceeEeeecCcccccccceeEEEecC-----CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe
Confidence            99987653  235678999999998876     45689999999999999998899988775 453 568889999887 


Q ss_pred             eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (500)
Q Consensus       253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (500)
                      ++++.+.|..+++|++.+|+.+..+.+.+..-                    ++           ..+.+.+..+..+++
T Consensus       319 yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tg--------------------rq-----------~~rtqAvFNhtEdyV  367 (430)
T KOG0640|consen  319 YILSSGKDSTVKLWEISTGRMLKEYTGAGTTG--------------------RQ-----------KHRTQAVFNHTEDYV  367 (430)
T ss_pred             EEeecCCcceeeeeeecCCceEEEEecCCccc--------------------ch-----------hhhhhhhhcCccceE
Confidence            68899999999999999999998876542110                    00           001111222223333


Q ss_pred             EEee-CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816          333 VSGS-DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (500)
Q Consensus       333 ~s~s-~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~  389 (500)
                      +.-. ..+.+.-||.+..........+|.+.++++.-||.+.-+.++|.|..+|.|--
T Consensus       368 l~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  368 LFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             EccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            3322 34568889988766655566799999999999999999999999999999953

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=2e-25  Score=209.08  Aligned_cols=289  Identities=25%  Similarity=0.353  Sum_probs=222.1

Q ss_pred             cCCcccEEEEEEcCC-----------CCeEEEEeCCCcEEEEeCCCCc--ee-----E----------------------
Q 010816          105 AGHTEAVLSVAFSPD-----------GRQLASGSGDTTVRLWDLNTQT--PM-----F----------------------  144 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~-----------~~~lat~~~d~~i~iwd~~~~~--~~-----~----------------------  144 (500)
                      .-|+..|+.+.--|.           ..-+.|++.|++||+||++...  .+     .                      
T Consensus       366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~  445 (1080)
T KOG1408|consen  366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA  445 (1080)
T ss_pred             eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence            358999999987662           1247899999999999986411  00     0                      


Q ss_pred             --------EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEE
Q 010816          145 --------KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA  216 (500)
Q Consensus       145 --------~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~  216 (500)
                              ..-+....+.+++.+|+|++||+|..-|++++|++..-+... ...+|...|.++.|+....  ....++++
T Consensus       446 ~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~-~~eAHesEilcLeyS~p~~--~~kLLASa  522 (1080)
T KOG1408|consen  446 GIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC-FMEAHESEILCLEYSFPVL--TNKLLASA  522 (1080)
T ss_pred             CcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh-heecccceeEEEeecCchh--hhHhhhhc
Confidence                    000234569999999999999999999999999998765432 4688999999999875433  23578999


Q ss_pred             eCCCcEEEEECCC-CeEEEEecCccccEEEEEeCCCC---eEEEEeCCCeEEEEeCCC-CeeEEEeecCC-----ceEEE
Q 010816          217 SKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQ-GKLIRELKGHG-----HWVNS  286 (500)
Q Consensus       217 s~dg~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~---~l~t~~~dg~i~lwd~~~-~~~~~~~~~~~-----~~v~~  286 (500)
                      +.|+.|.++|+.. ...+.++.+|...|+++.|..+|   .+++++.|..|.+ +..+ ......+..|.     ..+..
T Consensus       523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYD  601 (1080)
T KOG1408|consen  523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYD  601 (1080)
T ss_pred             cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEE
Confidence            9999999999864 45677889999999999998765   5889999988753 3322 11112222221     22344


Q ss_pred             EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee--eecccCcEE
Q 010816          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVN  364 (500)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~--~~~h~~~v~  364 (500)
                      +++.|.                                    ..++++++.|+.|+||++...++....  -.+|.+...
T Consensus       602 m~Vdp~------------------------------------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI  645 (1080)
T KOG1408|consen  602 MAVDPT------------------------------------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI  645 (1080)
T ss_pred             eeeCCC------------------------------------cceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence            444332                                    346899999999999998877654432  245667788


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEE
Q 010816          365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL  444 (500)
Q Consensus       365 ~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  444 (500)
                      .+...|.|.|||+.+.|+++.++|..+|+++....||...|+.++|                           .+|.+.|
T Consensus       646 Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF---------------------------~nDCkHl  698 (1080)
T KOG1408|consen  646 KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKF---------------------------LNDCKHL  698 (1080)
T ss_pred             EEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeee---------------------------cccchhh
Confidence            8999999999999999999999999999999999999999998854                           8999999


Q ss_pred             EEEECCCcEEEEECCC
Q 010816          445 LSGSKDSTLKVWDIRT  460 (500)
Q Consensus       445 ~s~s~d~~v~iwd~~~  460 (500)
                      ++.+.||.|.||.+..
T Consensus       699 ISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  699 ISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eeecCCceEEEEECch
Confidence            9999999999998753

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-25  Score=201.33  Aligned_cols=228  Identities=25%  Similarity=0.406  Sum_probs=186.3

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~  187 (500)
                      .++|.|++-+|+|.+|+.|...+.+.+|.+.+|..+..+.+|-+.|+|+.|+-||.+|+|||.||.|.+|.+..      
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------  154 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------  154 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe------
Confidence            46899999999999999999999999999999999988899999999999999999999999999999998632      


Q ss_pred             cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC---CCeEEEEeCCCeEE
Q 010816          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG---DGVIYTGSQDCTIK  264 (500)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~---~~~l~t~~~dg~i~  264 (500)
                                               ++++..|+        +-+....+..|+.+|+++....   +..++|+|.|.+++
T Consensus       155 -------------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k  201 (476)
T KOG0646|consen  155 -------------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK  201 (476)
T ss_pred             -------------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence                                     22222222        2234455678999999988754   45799999999999


Q ss_pred             EEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEE
Q 010816          265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (500)
Q Consensus       265 lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~w  344 (500)
                      +||+..|..+..+.. ...+.+++++|.                                    ...+..|+.+|.|.+.
T Consensus       202 ~wdlS~g~LLlti~f-p~si~av~lDpa------------------------------------e~~~yiGt~~G~I~~~  244 (476)
T KOG0646|consen  202 LWDLSLGVLLLTITF-PSSIKAVALDPA------------------------------------ERVVYIGTEEGKIFQN  244 (476)
T ss_pred             EEEeccceeeEEEec-CCcceeEEEccc------------------------------------ccEEEecCCcceEEee
Confidence            999999988776643 345677777653                                    3467888999998877


Q ss_pred             cCCCCC---------------CCceeeecccC--cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816          345 EPAVSK---------------QPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (500)
Q Consensus       345 d~~~~~---------------~~~~~~~~h~~--~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~  407 (500)
                      ++....               .....+.||.+  .|+|++++-||.+|++|+.||.|+|||+.+.++++++..-.++|+.
T Consensus       245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtn  324 (476)
T KOG0646|consen  245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTN  324 (476)
T ss_pred             ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccce
Confidence            653222               12234678888  8999999999999999999999999999999999888777888888


Q ss_pred             EEee
Q 010816          408 IRFE  411 (500)
Q Consensus       408 ~~~~  411 (500)
                      +++.
T Consensus       325 L~i~  328 (476)
T KOG0646|consen  325 LQIN  328 (476)
T ss_pred             eEee
Confidence            8773

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1.1e-23  Score=190.01  Aligned_cols=334  Identities=20%  Similarity=0.333  Sum_probs=239.9

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc-
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-  187 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~-  187 (500)
                      .-|.|++|.++|. ++||..+|.|.||+..+.+-......|.+.|.++....+|. |+||+.|..|..||-.-.+.... 
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~e  324 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETE  324 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccccccccccc
Confidence            6799999999998 78999999999999977665555558999999999999986 55699999999998321111000 


Q ss_pred             --------------------------------------cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816          188 --------------------------------------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (500)
Q Consensus       188 --------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~  229 (500)
                                                            ...+|....-+++-.|     ...++++++.|+.+++|+  .
T Consensus       325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-----s~~q~~T~gqdk~v~lW~--~  397 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-----SKNQLLTCGQDKHVRLWN--D  397 (626)
T ss_pred             CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-----ChhheeeccCcceEEEcc--C
Confidence                                                  0112333333333222     345799999999999999  3


Q ss_pred             CeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCC
Q 010816          230 RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (500)
Q Consensus       230 ~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  309 (500)
                      .+...+ +.-..++.|+.|.|.|.++.|+..|..-+.|.++...+..-.. ..++..+.++|+                 
T Consensus       398 ~k~~wt-~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~-----------------  458 (626)
T KOG2106|consen  398 HKLEWT-KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPD-----------------  458 (626)
T ss_pred             CceeEE-EEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCC-----------------
Confidence            333322 1234678899999999999999999999999998666655554 778888888876                 


Q ss_pred             HHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee-ecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (500)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd  388 (500)
                                         +..++.|+.|+.|++|.+........+. ..+...|+.+.||+|+++|.+-+-|-.|-.|.
T Consensus       459 -------------------G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  459 -------------------GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             -------------------CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence                               4579999999999999886655443333 22347899999999999999999999999995


Q ss_pred             CCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceee-eeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc---ccc
Q 010816          389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV-VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ---KLK  464 (500)
Q Consensus       389 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~---~~~  464 (500)
                      ......+..       +..+++....|..   ++... ......+..++-+.+.+++|+|...|.|++|...-.   ...
T Consensus       520 ~~~~~~~ts-------~kDvkW~t~~c~l---GF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~  589 (626)
T KOG2106|consen  520 PSECKQITS-------VKDVKWATYTCTL---GFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS  589 (626)
T ss_pred             cccCcccce-------ecceeeeeeEEEE---EEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc
Confidence            443332222       3344443222211   00000 011112333345678889999999999999975432   223


Q ss_pred             ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          465 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       465 ~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      .++.+|.+.|.+|+|.-+...|.+.+.|..|+.|.
T Consensus       590 he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~  624 (626)
T KOG2106|consen  590 HEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR  624 (626)
T ss_pred             eeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence            45678999999999999989999999999999996

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.7e-24  Score=183.21  Aligned_cols=237  Identities=19%  Similarity=0.268  Sum_probs=190.6

Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC---eEEEEeCCCeEEE
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKV  265 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~t~~~dg~i~l  265 (500)
                      +..|...+++++.+       +..+++||.|-+|+|||++..+.+..+-.|.+.|+++.|.++.   .|++|+.||.|.+
T Consensus        39 ~~aH~~sitavAVs-------~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   39 FSAHAGSITALAVS-------GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             ccccccceeEEEec-------ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            56788889888753       3579999999999999999999998899999999999998765   6999999999999


Q ss_pred             EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (500)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd  345 (500)
                      |+...=.++..++.|...|+.++++|..                                    ...++-+.|+.+++|+
T Consensus       112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~------------------------------------KLALsVg~D~~lr~WN  155 (362)
T KOG0294|consen  112 WRVGSWELLKSLKAHKGQVTDLSIHPSG------------------------------------KLALSVGGDQVLRTWN  155 (362)
T ss_pred             EEcCCeEEeeeecccccccceeEecCCC------------------------------------ceEEEEcCCceeeeeh
Confidence            9998888899999999999999998853                                    3456778999999999


Q ss_pred             CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceee
Q 010816          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV  425 (500)
Q Consensus       346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  425 (500)
                      +-..+.....-..+.  -+.|.|+|.|.+++.++.+ .|-+|.+.+..+....... ..+.++.                
T Consensus       156 LV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~----------------  215 (362)
T KOG0294|consen  156 LVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCAT----------------  215 (362)
T ss_pred             hhcCccceeeccCCc--ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeee----------------
Confidence            866554322222232  3348999999999888776 5889988765543322211 1122221                


Q ss_pred             eeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEE--cCCCCEEEEEeCCCcEEEecC
Q 010816          426 VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW--SPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       426 ~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~--s~dg~~l~s~~~D~~v~iW~~  500 (500)
                                  --++..|++|+.|+.|++||.........+.+|..+|-++.+  .|++.+|+|+|.||.|++|+.
T Consensus       216 ------------~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~  280 (362)
T KOG0294|consen  216 ------------FLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI  280 (362)
T ss_pred             ------------ecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence                        246789999999999999999998888999999999998874  677899999999999999974

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.7e-23  Score=194.21  Aligned_cols=245  Identities=22%  Similarity=0.331  Sum_probs=198.1

Q ss_pred             ccccCCc-ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          102 ATIAGHT-EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       102 ~~~~gh~-~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      .++.|+. ..|-+++|+ ++.+|++.+.+|+|.-||+.+.+++.......+.|.+++.+|.++.++.|+.||.+...+..
T Consensus        62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~  140 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG  140 (691)
T ss_pred             EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence            4455554 579999999 56678999999999999999999999998889999999999999999999999988888777


Q ss_pred             CCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-------c-CccccEEEEEeCCC
Q 010816          181 TGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-------S-GHTLAVTCVKWGGD  251 (500)
Q Consensus       181 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-------~-~h~~~v~~~~~~~~  251 (500)
                      .++... ..+...+..+.+++|+|..     .+++.|+.||.|++||+..+..+...       . +...-|.++.|-.+
T Consensus       141 p~~I~~~r~l~rq~sRvLslsw~~~~-----~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd  215 (691)
T KOG2048|consen  141 PDKITYKRSLMRQKSRVLSLSWNPTG-----TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD  215 (691)
T ss_pred             CceEEEEeecccccceEEEEEecCCc-----cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec
Confidence            665332 2345557889999998843     47999999999999999988766521       1 13345788888889


Q ss_pred             CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816          252 GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (500)
Q Consensus       252 ~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (500)
                      +.|++|..-|+|.+||...|.+++.+..|...|.+++..++                                    .++
T Consensus       216 ~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~------------------------------------~d~  259 (691)
T KOG2048|consen  216 STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN------------------------------------EDR  259 (691)
T ss_pred             CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC------------------------------------CCe
Confidence            99999999999999999999999999999999999987654                                    467


Q ss_pred             EEEeeCCCeEEEEcCCCCCC---CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816          332 LVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (500)
Q Consensus       332 ~~s~s~d~~v~~wd~~~~~~---~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~  390 (500)
                      +++++.|+.+..+.......   .......|...|.+++..++  .|.+|+.|..+.+=..+
T Consensus       260 vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  260 VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR  319 (691)
T ss_pred             EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence            89999999988876544322   22334567788999998876  89999999988776543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.4e-23  Score=170.55  Aligned_cols=243  Identities=25%  Similarity=0.391  Sum_probs=199.4

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce-----eEEecCCCCCEEEEEEcCC----CCEEEEEe-CCCe
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-----MFKCTGHKNWVLCIAWSAD----GKHLVSGS-KAGE  173 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~-----~~~~~~h~~~v~~v~~s~~----~~~l~s~~-~d~~  173 (500)
                      -+-|.+.|.|.+|+|+|++||||+.|.+|++-..+...+     -..+.-|.+.|..++|-.+    |.+|++++ .|.+
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            356999999999999999999999999999987654322     2356679999999999653    45777765 4677


Q ss_pred             EEEEeCCCCCcccccccCcccceEEE-EeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC--c-----cccEEE
Q 010816          174 LQCWDPQTGKPSGNPLSGHKKWITGI-SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--H-----TLAVTC  245 (500)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~--h-----~~~v~~  245 (500)
                      |.+=|...|+.. ..+.+|.+.|.++ .|+       +..|++|+.|.+||+||++-..|+.++..  |     ...|.+
T Consensus       165 iy~tdc~~g~~~-~a~sghtghilalyswn-------~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa  236 (350)
T KOG0641|consen  165 IYITDCGRGQGF-HALSGHTGHILALYSWN-------GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA  236 (350)
T ss_pred             EEEeecCCCCcc-eeecCCcccEEEEEEec-------CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence            777788777654 3578999988876 453       34799999999999999999999887642  1     356888


Q ss_pred             EEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816          246 VKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (500)
Q Consensus       246 ~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (500)
                      ++..|.|. |++|-.|.+..+||++.++.++.+..|...|+++.++|.                                
T Consensus       237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~--------------------------------  284 (350)
T KOG0641|consen  237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG--------------------------------  284 (350)
T ss_pred             EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC--------------------------------
Confidence            99998875 677889999999999999999999999999999999874                                


Q ss_pred             cCCCCcEEEEeeCCCeEEEEcCCCC---CCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816          325 KGNAPERLVSGSDDFTMFLWEPAVS---KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (500)
Q Consensus       325 ~~~~~~~~~s~s~d~~v~~wd~~~~---~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~  390 (500)
                          ..+++++|.|..|++-|+...   +.+......|.+.+..+.|+|..--+++.+.|+++.+|-+.
T Consensus       285 ----a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  285 ----AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ----ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence                347899999999999987532   33455667899999999999999899999999999999753

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=8.3e-27  Score=218.74  Aligned_cols=255  Identities=27%  Similarity=0.527  Sum_probs=214.6

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcccc
Q 010816          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA  242 (500)
Q Consensus       163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~  242 (500)
                      ..++....+-.+++||.+.       +..|...|.++.-     ....+.+++|+.|..+-+|.+....++..+.+|..+
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~-------~~~hsaav~~lk~-----~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hesp   72 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTRE-------FVAHSAAVGCLKI-----RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESP   72 (825)
T ss_pred             cccceeeeeeccccccchh-------hhhhhhhhceeee-----eccceeeccCCCceeeccccccCCchhheeeccCCc
Confidence            3445555666788888653       3455555555432     123456889999999999999998888889999999


Q ss_pred             EEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816          243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (500)
Q Consensus       243 v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (500)
                      |.|+.|+.+. .|++|+.+|+|++||+..++.++++.+|...+.+++|+|-                             
T Consensus        73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~-----------------------------  123 (825)
T KOG0267|consen   73 IESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY-----------------------------  123 (825)
T ss_pred             ceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc-----------------------------
Confidence            9999998765 5778999999999999999999999999999999998874                             


Q ss_pred             hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCC
Q 010816          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (500)
Q Consensus       322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h  401 (500)
                             +.++++|+.|..+.+||.+. ..+.....+|...|.++.|+|+|+++++|++|..++|||+..|++...|++|
T Consensus       124 -------~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~  195 (825)
T KOG0267|consen  124 -------GEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH  195 (825)
T ss_pred             -------eEEeccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc
Confidence                   34678999999999999764 3455667789999999999999999999999999999999999999999999


Q ss_pred             cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcC
Q 010816          402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP  481 (500)
Q Consensus       402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~  481 (500)
                      ++.+..+.                           |+|..-++++||.|++|++||+++.+.+.........|-++.|+|
T Consensus       196 e~~v~sle---------------------------~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~  248 (825)
T KOG0267|consen  196 EGKVQSLE---------------------------FHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP  248 (825)
T ss_pred             cccccccc---------------------------cCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC
Confidence            99987774                           477788999999999999999999888877777788999999999


Q ss_pred             CCCEEEEEeCCC
Q 010816          482 DGEKVASGGKDR  493 (500)
Q Consensus       482 dg~~l~s~~~D~  493 (500)
                      +++.+.+|-.+.
T Consensus       249 ~~~~~~~G~q~s  260 (825)
T KOG0267|consen  249 DGKIVLSGEQIS  260 (825)
T ss_pred             CceeeecCchhh
Confidence            999988886654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=1.6e-23  Score=196.06  Aligned_cols=365  Identities=23%  Similarity=0.397  Sum_probs=243.6

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-------EEecCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-------FKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-------~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i  174 (500)
                      +.+-||.+.|.++.|+|.+..|.+++.|.++.||...+..-+       -...|........-|+|+++.+++-++.|-.
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF  340 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence            345699999999999999999999999999999987654322       2233455678899999999999999999999


Q ss_pred             EEEeCCCCC--cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-CCe---EEEEecCccccEEEEEe
Q 010816          175 QCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRK---CVICLSGHTLAVTCVKW  248 (500)
Q Consensus       175 ~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~-~~~---~~~~~~~h~~~v~~~~~  248 (500)
                      ++|..+...  .....+.||.+.|.++.|.|.     +..+++.|.|.+-|++--- ..+   .+.--+-|....+|+++
T Consensus       341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ps-----GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~  415 (764)
T KOG1063|consen  341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPS-----GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF  415 (764)
T ss_pred             EEEeccCccceeeccccccccccceeeeecCC-----CCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence            999833221  122346899999999999984     4689999999999998643 111   11222347778999999


Q ss_pred             CC-CCeEEEEeCCCeEEEEeCCCCee--EE-----Ee-----ecCCceEEEEEecCccee----eeccc-----------
Q 010816          249 GG-DGVIYTGSQDCTIKVWETTQGKL--IR-----EL-----KGHGHWVNSLALSTEYAL----RTGAF-----------  300 (500)
Q Consensus       249 ~~-~~~l~t~~~dg~i~lwd~~~~~~--~~-----~~-----~~~~~~v~~~~~~~~~~~----~~~~~-----------  300 (500)
                      -+ +-.+++|.....+|+|+....-.  +.     ..     ...+..|..+-.+.....    ..|..           
T Consensus       416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~  495 (764)
T KOG1063|consen  416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA  495 (764)
T ss_pred             ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence            87 66788999999999999763210  00     00     011122333333322111    11111           


Q ss_pred             cCCCCCCCCHHH-HHHHH-HHhhhhhcC-----------CCCcEEEEeeCC-----CeEEEEcCCCCCCCceeeecccCc
Q 010816          301 DHTGKQYSSPEE-MKKAA-LERYNKIKG-----------NAPERLVSGSDD-----FTMFLWEPAVSKQPKTRMTGHQQL  362 (500)
Q Consensus       301 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~-----------~~~~~~~s~s~d-----~~v~~wd~~~~~~~~~~~~~h~~~  362 (500)
                      .+....-++.++ ..... .....++.|           +.++.+++++..     ..|++|+.....+ ...+.+|+-.
T Consensus       496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-~~~L~~HsLT  574 (764)
T KOG1063|consen  496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-VQELEGHSLT  574 (764)
T ss_pred             CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-hheecccceE
Confidence            000000011111 11111 112223333           334455655433     2588998665443 3478899999


Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCCCce----EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816          363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS  438 (500)
Q Consensus       363 v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  438 (500)
                      |+.++|||||++|++.|.|+++.+|.......    ....+.|+.-|..-                           +|+
T Consensus       575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc---------------------------sW~  627 (764)
T KOG1063|consen  575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC---------------------------SWS  627 (764)
T ss_pred             EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc---------------------------ccC
Confidence            99999999999999999999999998754321    11234454444332                           689


Q ss_pred             CCCCEEEEEECCCcEEEEECCCc--cccc--cccCcccCEEEEEEcCC-----CCEEEEEeCCCcEEEec
Q 010816          439 ADSRLLLSGSKDSTLKVWDIRTQ--KLKQ--DLPGHADEVFAVDWSPD-----GEKVASGGKDRVLKLWM  499 (500)
Q Consensus       439 ~~~~~l~s~s~d~~v~iwd~~~~--~~~~--~~~~h~~~V~~l~~s~d-----g~~l~s~~~D~~v~iW~  499 (500)
                      |++.+++++|.|++|++|.....  +.+.  ....+...|++++|.|-     +..++.|-..|.|.+|.
T Consensus       628 pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~  697 (764)
T KOG1063|consen  628 PDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR  697 (764)
T ss_pred             cccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence            99999999999999999998776  3332  23457889999998763     23567777889999996

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=7.7e-25  Score=195.37  Aligned_cols=304  Identities=18%  Similarity=0.308  Sum_probs=217.6

Q ss_pred             EeCCCCceeEEecCCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCC---cccccccCcccceEEEEeeeeecCCC
Q 010816          135 WDLNTQTPMFKCTGHKNWVLCIAWSADG--KHLVSGSKAGELQCWDPQTGK---PSGNPLSGHKKWITGISWEPVHLNAP  209 (500)
Q Consensus       135 wd~~~~~~~~~~~~h~~~v~~v~~s~~~--~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~  209 (500)
                      +|+.+.......+-+.+.|.+++|+|..  +++|+|+.-|.|-+||+.+..   .....+..|...|.++.|+|...   
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~---  247 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT---  247 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh---
Confidence            3444444444556789999999999964  578889999999999995322   12234678999999999999654   


Q ss_pred             CceEEEEeCCCcEEEEECCCCeE--EEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEEeCCCCee-EEEeecCCceEE
Q 010816          210 CRRFVSASKDGDARIWDVSLRKC--VICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVN  285 (500)
Q Consensus       210 ~~~~~s~s~dg~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~~~~~-~~~~~~~~~~v~  285 (500)
                       .++++.|.||+|++-|++....  +..+........++.|+.+ +.++.++.=|...+||++++.. ...+.-|...|.
T Consensus       248 -s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  248 -SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT  326 (498)
T ss_pred             -hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence             4799999999999999987643  2222223445566667654 4577788778999999998764 555667778899


Q ss_pred             EEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC---CceeeecccCc
Q 010816          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQL  362 (500)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~---~~~~~~~h~~~  362 (500)
                      .+++.|..                                   +..++++|.|++++|||++.-..   +......|...
T Consensus       327 sv~~NP~~-----------------------------------p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs  371 (498)
T KOG4328|consen  327 SVALNPVC-----------------------------------PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS  371 (498)
T ss_pred             eeecCCCC-----------------------------------chheeecccCcceeeeehhhhcCCCCcceecccccce
Confidence            99888752                                   45799999999999999875322   33455689999


Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCC----CCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816          363 VNHVYFSPDGQWVASASFDKSIKLWNGT----TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS  438 (500)
Q Consensus       363 v~~l~~sp~g~~lasgs~Dg~i~lwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  438 (500)
                      |++..|||+|..|+|.+.|..|+|||..    .-....++. |...-.          +..+.           -...|.
T Consensus       372 V~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~----------RwlT~-----------fKA~W~  429 (498)
T KOG4328|consen  372 VNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTG----------RWLTP-----------FKAAWD  429 (498)
T ss_pred             eeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccc----------ccccc-----------hhheeC
Confidence            9999999998889999999999999984    112222111 111000          00000           012689


Q ss_pred             CCCCEEEEEECCCcEEEEECCCccccccccCc-ccCEEE-EEEcCCCCEEEE-EeCCCcEEEec
Q 010816          439 ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH-ADEVFA-VDWSPDGEKVAS-GGKDRVLKLWM  499 (500)
Q Consensus       439 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h-~~~V~~-l~~s~dg~~l~s-~~~D~~v~iW~  499 (500)
                      |+..++++|..-..|-|+|-..++.+..+-+- ...|.+ ..|+|-+..+++ ++..|.|+||+
T Consensus       430 P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  430 PDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             CCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence            99999999999999999999988866554332 224554 389999885555 56678999985

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=1.6e-24  Score=200.74  Aligned_cols=288  Identities=24%  Similarity=0.390  Sum_probs=200.2

Q ss_pred             EEEEEcCC---CCeEEEEeCCCcEEEEeCCCCc------eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816          112 LSVAFSPD---GRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (500)
Q Consensus       112 ~~~~~sp~---~~~lat~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~  182 (500)
                      ++..|++.   ...||.+..||.|.++|.....      .+.....|.+.|..+.|.|....|++++.|.++++||++++
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            34667653   4579999999999999986432      23445579999999999996678999999999999999988


Q ss_pred             Ccccc-cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-------EEEe------------------
Q 010816          183 KPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-------VICL------------------  236 (500)
Q Consensus       183 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-------~~~~------------------  236 (500)
                      +..+. ...||...|.+++|.|.+.    ..|++|+.||.+.|||++-...       ....                  
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n~----~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~  208 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTNP----AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR  208 (720)
T ss_pred             eeecceeecccccccchhhhccCCC----cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence            76653 4679999999999988654    4799999999999999864320       0000                  


Q ss_pred             --cCcc----ccEEEEEeCCCCeEEEEeC-CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCC
Q 010816          237 --SGHT----LAVTCVKWGGDGVIYTGSQ-DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (500)
Q Consensus       237 --~~h~----~~v~~~~~~~~~~l~t~~~-dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  309 (500)
                        ..|.    ..|+.+.|-.+..|++++. |+.|+|||+++.........                              
T Consensus       209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep------------------------------  258 (720)
T KOG0321|consen  209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP------------------------------  258 (720)
T ss_pred             ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC------------------------------
Confidence              0111    1244455555556666555 77777777665322111000                              


Q ss_pred             HHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc---cCcEEEEEECCCCCEEEEEeCCCcEEE
Q 010816          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH---QQLVNHVYFSPDGQWVASASFDKSIKL  386 (500)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h---~~~v~~l~~sp~g~~lasgs~Dg~i~l  386 (500)
                                                               .....+..|   .-.+.++.....|.+|.+.+.|++|+.
T Consensus       259 -----------------------------------------~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~  297 (720)
T KOG0321|consen  259 -----------------------------------------RGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF  297 (720)
T ss_pred             -----------------------------------------CcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence                                                     000001111   223677788888888888888999999


Q ss_pred             EeCCCCc--eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc-
Q 010816          387 WNGTTGK--FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL-  463 (500)
Q Consensus       387 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~-  463 (500)
                      |++.+..  .+..+.++...-.-++-                         ..+|++.+|++|+.|..+++|.+.+.+. 
T Consensus       298 ynm~s~s~sP~~~~sg~~~~sf~vks-------------------------~lSpd~~~l~SgSsd~~ayiw~vs~~e~~  352 (720)
T KOG0321|consen  298 YNMRSLSISPVAEFSGKLNSSFYVKS-------------------------ELSPDDCSLLSGSSDEQAYIWVVSSPEAP  352 (720)
T ss_pred             EeccccCcCchhhccCcccceeeeee-------------------------ecCCCCceEeccCCCcceeeeeecCccCC
Confidence            9987643  23334443222111110                         2489999999999999999999987654 


Q ss_pred             cccccCcccCEEEEEEcCC-CCEEEEEeCCCcEEEec
Q 010816          464 KQDLPGHADEVFAVDWSPD-GEKVASGGKDRVLKLWM  499 (500)
Q Consensus       464 ~~~~~~h~~~V~~l~~s~d-g~~l~s~~~D~~v~iW~  499 (500)
                      ...+.||.-+|++++|.|. -.-++++++|.+++||.
T Consensus       353 ~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  353 PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR  389 (720)
T ss_pred             hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence            4567899999999999774 23578889999999996

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=1.4e-24  Score=196.43  Aligned_cols=242  Identities=25%  Similarity=0.354  Sum_probs=177.0

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC----cccccccCcccceEEEEeeeeecCCCCceEEEEeCC
Q 010816          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK----PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD  219 (500)
Q Consensus       144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d  219 (500)
                      ..+++|+..|.++++.|.|..|+|||.|-+|++||.....    ..+.........|.+++|++.     +..|+..+..
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T-----g~~iLvvsg~  235 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT-----GDQILVVSGS  235 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC-----CCeEEEEecC
Confidence            4678899999999999999999999999999999986432    222233444556788888873     4567777777


Q ss_pred             CcEEEEECCCCeEE------------EEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeE-EEeecCCceE
Q 010816          220 GDARIWDVSLRKCV------------ICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLI-RELKGHGHWV  284 (500)
Q Consensus       220 g~v~iwd~~~~~~~------------~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~-~~~~~~~~~v  284 (500)
                      ...+|+|-.-...+            ...+||...++|..|.|..  .++|++.||++|+||+..-+.. +.++      
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik------  309 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK------  309 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe------
Confidence            88999985433222            2236899999999999864  6999999999999998654311 1111      


Q ss_pred             EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEE
Q 010816          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN  364 (500)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~  364 (500)
                                                                                   ...       ..+..-.++
T Consensus       310 -------------------------------------------------------------~k~-------~~g~Rv~~t  321 (641)
T KOG0772|consen  310 -------------------------------------------------------------TKP-------AGGKRVPVT  321 (641)
T ss_pred             -------------------------------------------------------------ecc-------CCCcccCce
Confidence                                                                         000       002223477


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCc---eEEEEeCCcc--cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC
Q 010816          365 HVYFSPDGQWVASASFDKSIKLWNGTTGK---FVAVFRGHVG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA  439 (500)
Q Consensus       365 ~l~~sp~g~~lasgs~Dg~i~lwd~~~~~---~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  439 (500)
                      .++|+|||++||+|+.||+|.+|+.....   ...+-++|..  .|.++                           +||+
T Consensus       322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi---------------------------~FS~  374 (641)
T KOG0772|consen  322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI---------------------------SFSY  374 (641)
T ss_pred             eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE---------------------------Eecc
Confidence            89999999999999999999999975422   1234456655  55555                           6799


Q ss_pred             CCCEEEEEECCCcEEEEECCCc-cccccccCcc--cCEEEEEEcCCCCEEEEEeC
Q 010816          440 DSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHA--DEVFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       440 ~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h~--~~V~~l~~s~dg~~l~s~~~  491 (500)
                      +|++|++-+.|+++++||++.. +.+....+-.  -.-+.++||||.+.|++|+.
T Consensus       375 dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  375 DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence            9999999999999999999863 4444443322  23478899999999999865

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.5e-23  Score=200.77  Aligned_cols=286  Identities=17%  Similarity=0.310  Sum_probs=216.0

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      .+|+...+.|+|.|+|++|.+++.||.|++|+.... .....+..+...|.+++-  ++.+|++|+.+++|.+|...++.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence            469999999999999999999999999999986543 222222237777888776  45699999999999999987775


Q ss_pred             cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCe
Q 010816          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT  262 (500)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~  262 (500)
                      ... .+..-..++..++++     .++..++.||.|-.|++-+.........+++|..+|.++.|+|++ .|++.+-||.
T Consensus        88 ~~~-iL~Rftlp~r~~~v~-----g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~  161 (933)
T KOG1274|consen   88 EDT-ILARFTLPIRDLAVS-----GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK  161 (933)
T ss_pred             ccc-eeeeeeccceEEEEe-----cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence            421 233344555566554     356689999999999999999999999999999999999999987 5777889999


Q ss_pred             EEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEE
Q 010816          263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (500)
Q Consensus       263 i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~  342 (500)
                      |++||+.++.+...+.+-..                                                            
T Consensus       162 v~iw~~~~~~~~~tl~~v~k------------------------------------------------------------  181 (933)
T KOG1274|consen  162 VQIWDLQDGILSKTLTGVDK------------------------------------------------------------  181 (933)
T ss_pred             EEEEEcccchhhhhcccCCc------------------------------------------------------------
Confidence            99999988765544332100                                                            


Q ss_pred             EEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCc
Q 010816          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF  422 (500)
Q Consensus       343 ~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  422 (500)
                          ....       .....+..++|+|+|..||..+.|+.|++|+..+++....++.....                  
T Consensus       182 ----~n~~-------~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s------------------  232 (933)
T KOG1274|consen  182 ----DNEF-------ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSS------------------  232 (933)
T ss_pred             ----cccc-------cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccc------------------
Confidence                0000       00234677899999999999999999999999999887776642110                  


Q ss_pred             eeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       423 ~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                             ...+.+.|+|+|++||+++.||.|-|||.++.+.    ......|.+++|.|+...|-.-..-|+..+|
T Consensus       233 -------s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  233 -------SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             -------cceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence                   1123347999999999999999999999988332    2234689999999998877665555555444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=1e-23  Score=195.25  Aligned_cols=138  Identities=30%  Similarity=0.539  Sum_probs=110.8

Q ss_pred             eCCCeEEEEcCCCCCC-Cceeeec--ccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCc-------eEEEEeCCccc
Q 010816          336 SDDFTMFLWEPAVSKQ-PKTRMTG--HQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGK-------FVAVFRGHVGP  404 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~-~~~~~~~--h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~-------~~~~~~~h~~~  404 (500)
                      +..|.|-|+++..... +...+.+  ....|+.+.|+| |...||.++.||.|++|.+..+.       .-.++.+|...
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK  679 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK  679 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence            3455666776654322 1111211  235688999999 78899999999999999987643       34678899999


Q ss_pred             EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCC
Q 010816          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE  484 (500)
Q Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~  484 (500)
                      |+.++|..+                          ....|++++.|.+|++||+++.+....+.||.+.|++++|||||+
T Consensus       680 I~slRfHPL--------------------------AadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr  733 (1012)
T KOG1445|consen  680 ITSLRFHPL--------------------------AADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR  733 (1012)
T ss_pred             EEEEEecch--------------------------hhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCc
Confidence            999977432                          245899999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEec
Q 010816          485 KVASGGKDRVLKLWM  499 (500)
Q Consensus       485 ~l~s~~~D~~v~iW~  499 (500)
                      .+|+.+.||+|++++
T Consensus       734 ~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  734 RIATVCKDGTLRVYE  748 (1012)
T ss_pred             ceeeeecCceEEEeC
Confidence            999999999999985

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=2.7e-22  Score=187.54  Aligned_cols=285  Identities=17%  Similarity=0.182  Sum_probs=196.3

Q ss_pred             CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCcccccccCcccceEEE
Q 010816          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (500)
Q Consensus       121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~  199 (500)
                      +.+++++.|+.+++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..+++.... +..+.. +..+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~-~~~~   78 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT-LPSGPD-PELF   78 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe-ccCCCC-ccEE
Confidence            5688999999999999999888777776544 6789999999876 5677899999999988765432 222222 3455


Q ss_pred             EeeeeecCCCCceE-EEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCC-eEEEEeCCCCeeEEE
Q 010816          200 SWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDC-TIKVWETTQGKLIRE  276 (500)
Q Consensus       200 ~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg-~i~lwd~~~~~~~~~  276 (500)
                      .|.|     +++.+ ++++.|+.+++||+++.+.+..+..+ ..+.++.|++++. +++++.++ .+.+||..+++....
T Consensus        79 ~~~~-----~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~  152 (300)
T TIGR03866        79 ALHP-----NGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN  152 (300)
T ss_pred             EECC-----CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence            6655     33444 55667899999999988877666432 3457789999874 55566554 577789888776554


Q ss_pred             eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCCeEEEEcCCCCCCCcee
Q 010816          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTR  355 (500)
Q Consensus       277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~~v~~wd~~~~~~~~~~  355 (500)
                      +... .....++++++                                    +..+ +++..++.+++||....... ..
T Consensus       153 ~~~~-~~~~~~~~s~d------------------------------------g~~l~~~~~~~~~v~i~d~~~~~~~-~~  194 (300)
T TIGR03866       153 VLVD-QRPRFAEFTAD------------------------------------GKELWVSSEIGGTVSVIDVATRKVI-KK  194 (300)
T ss_pred             EEcC-CCccEEEECCC------------------------------------CCEEEEEcCCCCEEEEEEcCcceee-ee
Confidence            3322 12234444443                                    2344 45557999999998654321 11


Q ss_pred             eec-----ccC--cEEEEEECCCCCEEEE-EeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeee
Q 010816          356 MTG-----HQQ--LVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD  427 (500)
Q Consensus       356 ~~~-----h~~--~v~~l~~sp~g~~las-gs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  427 (500)
                      +..     +..  ....++|+|++++++. .+.++.+.+||..+++.+..+. +...+.++                   
T Consensus       195 ~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~-------------------  254 (300)
T TIGR03866       195 ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQL-------------------  254 (300)
T ss_pred             eeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceE-------------------
Confidence            111     111  2346889999998544 4556789999999888765443 22233333                   


Q ss_pred             ccccceeeEEcCCCCEEEEE-ECCCcEEEEECCCccccccccCcccCEEEEEEcC
Q 010816          428 MSCCMSLYSWSADSRLLLSG-SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP  481 (500)
Q Consensus       428 ~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~  481 (500)
                              +|+|+|++|+++ +.++.|++||+++++.+..++.. ...++++++|
T Consensus       255 --------~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       255 --------AFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             --------EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence                    679999999886 46899999999999988887654 4558888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=9.8e-24  Score=188.92  Aligned_cols=287  Identities=23%  Similarity=0.309  Sum_probs=210.0

Q ss_pred             EEeCCC-cEEEEeCCCCceeEEecCC-CCCEEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCCcccccccCcccceEEEEe
Q 010816          125 SGSGDT-TVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGSKA-GELQCWDPQTGKPSGNPLSGHKKWITGISW  201 (500)
Q Consensus       125 t~~~d~-~i~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~  201 (500)
                      +++.|. ++.+||+.++.....+++- ...-.++.. -++.+++++... ..|.+|.+....... ...--.+.|.++.-
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s   89 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALAS   89 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhh-hhcccccceeeeec
Confidence            344554 5999999999888777654 111111111 133677777654 468999886543222 11112345666654


Q ss_pred             eeeecCCCCceEEEEe-CCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCC---------C
Q 010816          202 EPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT---------Q  270 (500)
Q Consensus       202 ~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~---------~  270 (500)
                      .|      +..|+.+| -.|.+++|.+.+|..+..+.+|-..|+|+.|+.|+ .|++||.||.|.+|.+.         +
T Consensus        90 ~n------~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~  163 (476)
T KOG0646|consen   90 SN------LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS  163 (476)
T ss_pred             CC------CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence            33      23455555 99999999999999999999999999999999887 68999999999999763         2


Q ss_pred             CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC
Q 010816          271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (500)
Q Consensus       271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~  350 (500)
                      .+.++.+..|.-+|..+.+....                                  ...++++.|.|.++++||+....
T Consensus       164 ~~p~~~f~~HtlsITDl~ig~Gg----------------------------------~~~rl~TaS~D~t~k~wdlS~g~  209 (476)
T KOG0646|consen  164 VKPLHIFSDHTLSITDLQIGSGG----------------------------------TNARLYTASEDRTIKLWDLSLGV  209 (476)
T ss_pred             ccceeeeccCcceeEEEEecCCC----------------------------------ccceEEEecCCceEEEEEeccce
Confidence            34566778888888887665421                                  24579999999999999987654


Q ss_pred             CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------------ceEEEEeCCcc--cEEEEEeee
Q 010816          351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG----------------KFVAVFRGHVG--PVYQIRFEL  412 (500)
Q Consensus       351 ~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~----------------~~~~~~~~h~~--~v~~~~~~~  412 (500)
                      .....  .-+..+.+++.+|-++.+..|+.+|.|.+.++...                ..+..+.||.+  +|+++    
T Consensus       210 LLlti--~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL----  283 (476)
T KOG0646|consen  210 LLLTI--TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL----  283 (476)
T ss_pred             eeEEE--ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE----
Confidence            33222  23567999999999999999999999999876532                23445666665  55555    


Q ss_pred             eeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCC
Q 010816          413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD  482 (500)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d  482 (500)
                                             +.+.||.+|++|+.||.|.|||+.+.++++++.--.++|+.+.+.|=
T Consensus       284 -----------------------ais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  284 -----------------------AISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             -----------------------EEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence                                   66889999999999999999999999999888756788988888553

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.1e-25  Score=211.28  Aligned_cols=221  Identities=28%  Similarity=0.518  Sum_probs=190.7

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~  182 (500)
                      .+..|...|.++..-..++.+++|+.|..+-+|.+....++..+.+|+.+|.||.|+++..+|++|+.+|+|++||++.+
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence            34568899999999888899999999999999999888777789999999999999999999999999999999999988


Q ss_pred             CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCC
Q 010816          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC  261 (500)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg  261 (500)
                      +.+. .+.+|...+.++.|+|.     +.++++|+.|+.+++||.+..-|...+.+|...|.++.|+|+| +++.|+.|.
T Consensus       103 k~vr-tLtgh~~~~~sv~f~P~-----~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~  176 (825)
T KOG0267|consen  103 KIVR-TLTGHLLNITSVDFHPY-----GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN  176 (825)
T ss_pred             hhhh-hhhccccCcceeeeccc-----eEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence            7654 68899999999999885     3578999999999999999999999999999999999999999 678889999


Q ss_pred             eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (500)
Q Consensus       262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v  341 (500)
                      ++++||+..|+.+.+++                                                               
T Consensus       177 tvki~d~~agk~~~ef~---------------------------------------------------------------  193 (825)
T KOG0267|consen  177 TVKIWDLTAGKLSKEFK---------------------------------------------------------------  193 (825)
T ss_pred             eeeeecccccccccccc---------------------------------------------------------------
Confidence            99999998877655443                                                               


Q ss_pred             EEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (500)
Q Consensus       342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~  408 (500)
                                      +|...+..+.|+|..-++++||.|+++++||+++-+.+...+.....|.+.
T Consensus       194 ----------------~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~  244 (825)
T KOG0267|consen  194 ----------------SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSL  244 (825)
T ss_pred             ----------------cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceee
Confidence                            344556667788888889999999999999999888776666555555555

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.6e-23  Score=183.26  Aligned_cols=287  Identities=14%  Similarity=0.262  Sum_probs=213.5

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCCc
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKP  184 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~~wd~~~~~~  184 (500)
                      .+.|++++|||....|.+|+.|++++||.+....  .+..+.--.-+|.+..|.|+|. .+++++.......||+.+++.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            4679999999999999999999999999987543  3444434467899999999998 899999999999999998875


Q ss_pred             ccc-cccCccc-ceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCC
Q 010816          185 SGN-PLSGHKK-WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC  261 (500)
Q Consensus       185 ~~~-~~~~~~~-~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg  261 (500)
                      .+. +..++.. .+...     ..+.++..++..|..|.|.+....++..+..++ -.+.|..+.|++++ .|++.+.+|
T Consensus       293 ~k~~~~~g~e~~~~e~F-----eVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~G  366 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERF-----EVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTG  366 (514)
T ss_pred             ccccCCCCcccchhhee-----EecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCc
Confidence            331 2334432 22222     223355688999999999999888887766554 24678899999887 477788899


Q ss_pred             eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (500)
Q Consensus       262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v  341 (500)
                      .|.+||+++..+++.+...                                                          |.|
T Consensus       367 eV~v~nl~~~~~~~rf~D~----------------------------------------------------------G~v  388 (514)
T KOG2055|consen  367 EVYVWNLRQNSCLHRFVDD----------------------------------------------------------GSV  388 (514)
T ss_pred             eEEEEecCCcceEEEEeec----------------------------------------------------------Ccc
Confidence            9999999887665543311                                                          111


Q ss_pred             EEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCC
Q 010816          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN  421 (500)
Q Consensus       342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  421 (500)
                                          .-++++.|++|.+||+||..|.|.|||..+...    .+...|+                
T Consensus       389 --------------------~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~----s~~PkPi----------------  428 (514)
T KOG2055|consen  389 --------------------HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA----STNPKPI----------------  428 (514)
T ss_pred             --------------------ceeeeeecCCCceEEeccCcceEEEeccchhhc----cCCCCch----------------
Confidence                                024678889999999999999999999765311    0011111                


Q ss_pred             ceeeeeccccceeeEEcCCCCEEEEEEC--CCcEEEEECCCccccccccCcc---cCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816          422 FYCVVDMSCCMSLYSWSADSRLLLSGSK--DSTLKVWDIRTQKLKQDLPGHA---DEVFAVDWSPDGEKVASGGKDRVLK  496 (500)
Q Consensus       422 ~~~~~~~~~~~~~~~~s~~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~h~---~~V~~l~~s~dg~~l~s~~~D~~v~  496 (500)
                       ..+.+....++.+.|++++++||.+|.  +..+|+-.+.+......++.-+   +.|++++|||.|-+||.|..+|+|.
T Consensus       429 -k~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~  507 (514)
T KOG2055|consen  429 -KTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH  507 (514)
T ss_pred             -hhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence             112233344555678999999998874  6789999998888777776543   4689999999999999999999999


Q ss_pred             Eec
Q 010816          497 LWM  499 (500)
Q Consensus       497 iW~  499 (500)
                      +|.
T Consensus       508 l~k  510 (514)
T KOG2055|consen  508 LFK  510 (514)
T ss_pred             eEe
Confidence            996

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5e-22  Score=185.77  Aligned_cols=391  Identities=19%  Similarity=0.240  Sum_probs=244.5

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE--EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      +..-.++|++++.+|.+..++.|+.||.+.+.+...+...+  .+...++.|.+++|+|++..|++|+.||.|++||..+
T Consensus       106 ~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~  185 (691)
T KOG2048|consen  106 IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS  185 (691)
T ss_pred             ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence            34567899999999999999999999977777776655433  2334568999999999999999999999999999988


Q ss_pred             CCcccc---cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC-CeEEEE
Q 010816          182 GKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTG  257 (500)
Q Consensus       182 ~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~  257 (500)
                      +.....   .+.+....-..+.|+-...  .+..+++|.+.|+|++||...+..+..+..|.+.|.|++-+++ ..++++
T Consensus       186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsa  263 (691)
T KOG2048|consen  186 GQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSA  263 (691)
T ss_pred             CceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEc
Confidence            865430   1222222223455554332  3468999999999999999999999999999999999999876 689999


Q ss_pred             eCCCeEEEEeCCCCee--E--EEeecCCceEEEEEecCcceeeeccccCCCCCCC-----CHHHHHHHHHHhhhhhcCCC
Q 010816          258 SQDCTIKVWETTQGKL--I--RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS-----SPEEMKKAALERYNKIKGNA  328 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~--~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  328 (500)
                      +-|+.|..|...+++.  +  .....|.+.|++++..+. ++..++.|..-....     ...............+...+
T Consensus       264 Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~  342 (691)
T KOG2048|consen  264 GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP  342 (691)
T ss_pred             cCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEecceeeEEEEccccccCchhhhccccccccceeecCc
Confidence            9999998887765532  2  233568889999988766 444444432211111     00000000000000011112


Q ss_pred             CcEEEEeeCCCeEEEEcCCCC----C-C---CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe-
Q 010816          329 PERLVSGSDDFTMFLWEPAVS----K-Q---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-  399 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~----~-~---~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-  399 (500)
                      .++++.--.+..+.+|.+...    . .   ...........|.|.+.||+|++||.+.-- .+++|.++.-..+.... 
T Consensus       343 ~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v  421 (691)
T KOG2048|consen  343 ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINV  421 (691)
T ss_pred             cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEe
Confidence            222322223333444443221    0 0   011112234568999999999999987643 46666654311111100 


Q ss_pred             ----CCcccEEEEEee-----------------eeeeecCCCCcee--eeec--cccceeeEEcCCCCEEEEEECCCcEE
Q 010816          400 ----GHVGPVYQIRFE-----------------LIYCFRYPSNFYC--VVDM--SCCMSLYSWSADSRLLLSGSKDSTLK  454 (500)
Q Consensus       400 ----~h~~~v~~~~~~-----------------~~~~~~~~~~~~~--~~~~--~~~~~~~~~s~~~~~l~s~s~d~~v~  454 (500)
                          ....+...+.|.                 ... ...++....  ....  -..++.++.|++|++||+.+.+|.|.
T Consensus       422 ~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~e-l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~  500 (691)
T KOG2048|consen  422 DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFE-LETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIF  500 (691)
T ss_pred             ccchhhhccceeeEEEecCceEEEEecccceeEEEE-ecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEE
Confidence                000011111110                 000 001111000  0111  12356677899999999999999999


Q ss_pred             EEECCCccccccccCcccCEEEEEEc-CCCCEEEEEeCCCcEEEec
Q 010816          455 VWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       455 iwd~~~~~~~~~~~~h~~~V~~l~~s-~dg~~l~s~~~D~~v~iW~  499 (500)
                      +|++++++...-...-...|++.+++ ++...|+.+.+|+++.-++
T Consensus       501 v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efd  546 (691)
T KOG2048|consen  501 VYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD  546 (691)
T ss_pred             EEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence            99999987654333344789999999 5677899999999987665

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.3e-24  Score=205.64  Aligned_cols=238  Identities=20%  Similarity=0.358  Sum_probs=192.0

Q ss_pred             EEEEEcC-CCCeEEEEeCCCcEEEEeCCC---CceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCccc
Q 010816          112 LSVAFSP-DGRQLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSG  186 (500)
Q Consensus       112 ~~~~~sp-~~~~lat~~~d~~i~iwd~~~---~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~  186 (500)
                      ..++|+. +.++|||++..|.|.+||+..   .+.+..+..|+..+.++.|++. ..+|+|||.||+|++||++..+...
T Consensus        91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~  170 (839)
T KOG0269|consen   91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS  170 (839)
T ss_pred             hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence            3456653 467999999999999999986   5556677899999999999985 5689999999999999998765433


Q ss_pred             ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEE
Q 010816          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIK  264 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~  264 (500)
                       .+.+....|..+.|+|..    ...|+++...|.+++||++. .++...+.+|+++|.|+.|+|++ .|+|||+|++|+
T Consensus       171 -t~~~nSESiRDV~fsp~~----~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vk  245 (839)
T KOG0269|consen  171 -TFRSNSESIRDVKFSPGY----GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVK  245 (839)
T ss_pred             -cccccchhhhceeeccCC----CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEE
Confidence             455677889999999854    45899999999999999985 46777889999999999999976 689999999999


Q ss_pred             EEeCCCCeeEEEe-ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee--CCCeE
Q 010816          265 VWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS--DDFTM  341 (500)
Q Consensus       265 lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s--~d~~v  341 (500)
                      |||..+++..... .....+|..+.+-|+..                                   ..|++++  .|-.|
T Consensus       246 iWd~t~~~~~~~~tInTiapv~rVkWRP~~~-----------------------------------~hLAtcsmv~dtsV  290 (839)
T KOG0269|consen  246 IWDMTDSRAKPKHTINTIAPVGRVKWRPARS-----------------------------------YHLATCSMVVDTSV  290 (839)
T ss_pred             EEeccCCCccceeEEeecceeeeeeeccCcc-----------------------------------chhhhhhccccceE
Confidence            9999866543222 12345677788777532                                   3455554  47889


Q ss_pred             EEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeC
Q 010816          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNG  389 (500)
Q Consensus       342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~  389 (500)
                      ++||++..-.|...+..|.+.++.++|.. |-..|.+++.|++|..-..
T Consensus       291 ~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  291 HVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF  339 (839)
T ss_pred             EEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence            99999988888999999999999999976 5568889999998765433

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=9.4e-23  Score=196.85  Aligned_cols=248  Identities=19%  Similarity=0.378  Sum_probs=189.0

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC
Q 010816          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (500)
Q Consensus       148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~  227 (500)
                      .|+..-+.|+|.|+|+.|++|+.||.|++|+...-......+..+...|.+++-       ...+|++|+.+++|.+|..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~-------~s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC-------YSNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee-------cccceEEeeccceEEEeeC
Confidence            688889999999999999999999999999875542222223335566666653       2348999999999999998


Q ss_pred             CCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCC
Q 010816          228 SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (500)
Q Consensus       228 ~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  306 (500)
                      ..+..-..+..-+.++++++++.+| .++.||.|-.|++-+..+..                                  
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s----------------------------------  129 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS----------------------------------  129 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc----------------------------------
Confidence            8776544444456678888888776 45667777777766543321                                  


Q ss_pred             CCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEE
Q 010816          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL  386 (500)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~l  386 (500)
                                                                   ....+.+|..+|.+|.|+|++.+||+.+-||.|++
T Consensus       130 ---------------------------------------------~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i  164 (933)
T KOG1274|consen  130 ---------------------------------------------QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI  164 (933)
T ss_pred             ---------------------------------------------hheeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence                                                         12345688999999999999999999999999999


Q ss_pred             EeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc
Q 010816          387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD  466 (500)
Q Consensus       387 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~  466 (500)
                      ||++++.+..++.+-.. .+  .+                ........++|+|+|..|+..+.|+.|++|+....+..+.
T Consensus       165 w~~~~~~~~~tl~~v~k-~n--~~----------------~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~  225 (933)
T KOG1274|consen  165 WDLQDGILSKTLTGVDK-DN--EF----------------ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK  225 (933)
T ss_pred             EEcccchhhhhcccCCc-cc--cc----------------cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee
Confidence            99999988776654210 00  00                0022234468999999999999999999999999888877


Q ss_pred             ccC--cccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          467 LPG--HADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       467 ~~~--h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      +..  |...+..+.|+|.|+|||+++.||.|.||+.
T Consensus       226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv  261 (933)
T KOG1274|consen  226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV  261 (933)
T ss_pred             ecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence            765  3445889999999999999999999999974

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.4e-22  Score=172.78  Aligned_cols=279  Identities=18%  Similarity=0.345  Sum_probs=198.2

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccccc
Q 010816          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS  190 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  190 (500)
                      -.|+.|++.|.+||.|+.||.|.|||+.+...-..+.+|..+|.|++||+||.+|+++|.|..|.+||+..|.+..+.  
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--
Confidence            569999999999999999999999999998877778899999999999999999999999999999999999865432  


Q ss_pred             CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc----cccEEEEEeCCCC-eEEEEeCCCeEEE
Q 010816          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH----TLAVTCVKWGGDG-VIYTGSQDCTIKV  265 (500)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h----~~~v~~~~~~~~~-~l~t~~~dg~i~l  265 (500)
                      ....+|....|+|...    +.+++.-.+..-.+-++..++....-...    +..-.+..|...| +|++|...|.+.+
T Consensus       104 rf~spv~~~q~hp~k~----n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv  179 (405)
T KOG1273|consen  104 RFDSPVWGAQWHPRKR----NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV  179 (405)
T ss_pred             EccCccceeeeccccC----CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence            2356788888888543    24554444444444444432211100000    1111223455444 7999999999999


Q ss_pred             EeCCCCeeEEEeecCC-ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEE
Q 010816          266 WETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (500)
Q Consensus       266 wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~w  344 (500)
                      +|..+-+++..++... ..|..+-++.                                    .++.++.-+.|+.|+.+
T Consensus       180 ~~a~t~e~vas~rits~~~IK~I~~s~------------------------------------~g~~liiNtsDRvIR~y  223 (405)
T KOG1273|consen  180 YDAETLECVASFRITSVQAIKQIIVSR------------------------------------KGRFLIINTSDRVIRTY  223 (405)
T ss_pred             EecchheeeeeeeechheeeeEEEEec------------------------------------cCcEEEEecCCceEEEE
Confidence            9999988887776554 4555554443                                    25678899999999999


Q ss_pred             cCCCCCC--------Cceeee--cccCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCCCceEEEEeCCccc-EEEEEeee
Q 010816          345 EPAVSKQ--------PKTRMT--GHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHVGP-VYQIRFEL  412 (500)
Q Consensus       345 d~~~~~~--------~~~~~~--~h~~~v~~l~~sp~g~~lasgs~-Dg~i~lwd~~~~~~~~~~~~h~~~-v~~~~~~~  412 (500)
                      +...-..        +..++.  -..-.-.+++||.+|.+++.|+. ...++||.-..|.+++++.|.++. ...+    
T Consensus       224 e~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV----  299 (405)
T KOG1273|consen  224 EISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDV----  299 (405)
T ss_pred             ehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeec----
Confidence            8642110        011110  01122357889999999987764 467999999999999999998754 3333    


Q ss_pred             eeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                                             .|.|-...+++- ..|.|++|...
T Consensus       300 -----------------------~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  300 -----------------------NWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             -----------------------ccccceeeeeec-cCCceEEEEee
Confidence                                   456666566666 67889999754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=6.1e-23  Score=178.99  Aligned_cols=243  Identities=26%  Similarity=0.479  Sum_probs=192.9

Q ss_pred             ccCCcccEEEEEEcCCCC--eEEEEeCCCcEEEEeCCC----------------CceeEEecCCCCCEEEEEEcCC-CCE
Q 010816          104 IAGHTEAVLSVAFSPDGR--QLASGSGDTTVRLWDLNT----------------QTPMFKCTGHKNWVLCIAWSAD-GKH  164 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~--~lat~~~d~~i~iwd~~~----------------~~~~~~~~~h~~~v~~v~~s~~-~~~  164 (500)
                      ..+|.+.+..+.-++-++  ++|+=+..|.|.|||+..                .++++++.+|.+.=+.++|||- ...
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            457889999998888664  556667899999999742                3678889999998999999993 235


Q ss_pred             EEEEeCCCeEEEEeCCCCCc--ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC---eEEEEecCc
Q 010816          165 LVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGH  239 (500)
Q Consensus       165 l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~---~~~~~~~~h  239 (500)
                      |+||.--+.|++|.+.+|.-  -..++.+|+..|..++|+|...    ..|++||-||+|+|||++.+   .++.. +.|
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~----~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh  301 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED----GVFASCSCDGSIRIWDIRSGPKKAAVST-KAH  301 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccC----ceEEeeecCceEEEEEecCCCccceeEe-ecc
Confidence            88888889999999988753  3457888999999999999653    48999999999999999987   45544 899


Q ss_pred             cccEEEEEeCCCC-eEEEEeCCCeEEEEeCCC---CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHH
Q 010816          240 TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ---GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (500)
Q Consensus       240 ~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (500)
                      ...|..+.|+... .|++|+.||+++|||+++   ++.+..++.|..+|+++.++|..                      
T Consensus       302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e----------------------  359 (440)
T KOG0302|consen  302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE----------------------  359 (440)
T ss_pred             CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc----------------------
Confidence            9999999998653 689999999999999975   46788999999999999998742                      


Q ss_pred             HHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC---------------Cceeeecc--cCcEEEEEECCC-CCEEEE
Q 010816          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---------------PKTRMTGH--QQLVNHVYFSPD-GQWVAS  377 (500)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~---------------~~~~~~~h--~~~v~~l~~sp~-g~~las  377 (500)
                                   ...+++++.|..|.+||+.....               +.+.+.-|  +..+..|.|+++ ..+|++
T Consensus       360 -------------~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs  426 (440)
T KOG0302|consen  360 -------------DSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS  426 (440)
T ss_pred             -------------CceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence                         34688899999999999764322               22233334  355888999986 467888


Q ss_pred             EeCCCcEEEE
Q 010816          378 ASFDKSIKLW  387 (500)
Q Consensus       378 gs~Dg~i~lw  387 (500)
                      .+.|| +.||
T Consensus       427 Ta~dG-fnVf  435 (440)
T KOG0302|consen  427 TAIDG-FNVF  435 (440)
T ss_pred             ecccc-eeEE
Confidence            88887 3443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.5e-22  Score=182.38  Aligned_cols=284  Identities=18%  Similarity=0.208  Sum_probs=205.7

Q ss_pred             CCCcEEEEeCCCCceeEEecCC--CCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC--Ccc-cccccCcc-cceEEEE
Q 010816          128 GDTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTG--KPS-GNPLSGHK-KWITGIS  200 (500)
Q Consensus       128 ~d~~i~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~~~-~l~s~~~d~~i~~wd~~~~--~~~-~~~~~~~~-~~v~~~~  200 (500)
                      ....++|||...-...-.+..|  .-.+.++.|+.... .+++.+.|+.+++|.-...  ... .....+.. ..|.++.
T Consensus        10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s   89 (673)
T KOG4378|consen   10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS   89 (673)
T ss_pred             cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence            3346999998643222112112  23488999987653 2344566889999963221  111 01111211 1222222


Q ss_pred             eeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeec
Q 010816          201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (500)
Q Consensus       201 ~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~  279 (500)
                      +        ..++++|+..+.|+|||++...+...+++|...|+++.|+. |.+|++++..|.|.|..+.++.....+..
T Consensus        90 ~--------S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~  161 (673)
T KOG4378|consen   90 Q--------SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI  161 (673)
T ss_pred             c--------ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence            2        24789999999999999998888888999999999999974 66899999999999999988876666654


Q ss_pred             C-CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec
Q 010816          280 H-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG  358 (500)
Q Consensus       280 ~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~  358 (500)
                      . ++.|+-+.+++.                                   ....|.+++++|+|.+||.........-...
T Consensus       162 ~sgqsvRll~ys~s-----------------------------------kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~  206 (673)
T KOG4378|consen  162 DSGQSVRLLRYSPS-----------------------------------KRFLLSIASDKGAVTLWDVQGMSPIFHASEA  206 (673)
T ss_pred             CCCCeEEEeecccc-----------------------------------cceeeEeeccCCeEEEEeccCCCcccchhhh
Confidence            4 455555555442                                   2346788999999999998766665666788


Q ss_pred             ccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816          359 HQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (500)
Q Consensus       359 h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (500)
                      |..+...++|+| +..+|++.+.|..|.+||....+....+.                            .+...+.++|
T Consensus       207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----------------------------y~~Plstvaf  258 (673)
T KOG4378|consen  207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----------------------------YSHPLSTVAF  258 (673)
T ss_pred             ccCCcCcceecCCccceEEEecccceEEEeecccccccceee----------------------------ecCCcceeee
Confidence            999999999999 46788999999999999988655443322                            1122344588


Q ss_pred             cCCCCEEEEEECCCcEEEEECCC-ccccccccCcccCEEEEEEcCC
Q 010816          438 SADSRLLLSGSKDSTLKVWDIRT-QKLKQDLPGHADEVFAVDWSPD  482 (500)
Q Consensus       438 s~~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~d  482 (500)
                      +++|.+|++|...|.|..||++. ...+..+..|...|++++|-|.
T Consensus       259 ~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  259 SECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             cCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            99999999999999999999986 4567888899999999999775

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.91  E-value=7.5e-22  Score=173.97  Aligned_cols=318  Identities=23%  Similarity=0.368  Sum_probs=215.5

Q ss_pred             cccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCce---------eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816          108 TEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTP---------MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (500)
Q Consensus       108 ~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~---------~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w  177 (500)
                      ..+|.++.|.+++. .||||+.|..|+||-++...+         +..+..|.+.|+++.|+|+|++||||+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            45799999999877 999999999999998754321         23577899999999999999999999999999999


Q ss_pred             eCC--------C-----C--CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcccc
Q 010816          178 DPQ--------T-----G--KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA  242 (500)
Q Consensus       178 d~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~  242 (500)
                      ...        +     .  ..+...+.+|...+..++|.|.     ...+++++.|..+++||+..++....+.+|...
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-----~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y  167 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-----SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY  167 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-----CceeeeeeccceEEEEEeccceeEeeccccccc
Confidence            765        2     0  1122346778899999999874     357899999999999999999999999999999


Q ss_pred             EEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816          243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (500)
Q Consensus       243 v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (500)
                      +.-++|.+-+ ++++-+.|...+.+.+...+.++.   +...+.-.          ...                     
T Consensus       168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~---~~~~~m~~----------~~~---------------------  213 (434)
T KOG1009|consen  168 VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR---HGLDIMPA----------KAF---------------------  213 (434)
T ss_pred             cceeecchhhhhhhhhccCcccceeeeeeeeeeee---eeeeEeee----------ccc---------------------
Confidence            9999999865 577778888666666543322221   11100000          000                     


Q ss_pred             hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC----CC-----cEEEEeCCC-
Q 010816          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF----DK-----SIKLWNGTT-  391 (500)
Q Consensus       322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~----Dg-----~i~lwd~~~-  391 (500)
                           +       .......+++.-...          ......++|+|+|.+|++.+.    ++     ..++|+-.. 
T Consensus       214 -----~-------~~e~~s~rLfhDeTl----------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l  271 (434)
T KOG1009|consen  214 -----N-------EREGKSTRLFHDETL----------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL  271 (434)
T ss_pred             -----C-------CCCcceeeeeecCch----------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc
Confidence                 0       001112223321111          122456789999999987532    22     235554432 


Q ss_pred             CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC-c
Q 010816          392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-H  470 (500)
Q Consensus       392 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h  470 (500)
                      .+.+..+.+-..+...+++..++.-.-|......         +.--|-+..+|.+.. +.|++||.++...+..... |
T Consensus       272 ~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~---------~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nih  341 (434)
T KOG1009|consen  272 KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF---------LFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIH  341 (434)
T ss_pred             cCceeecCCCCcceEEEEeeeeEEEecccccccc---------ccccccceEEEEeec-ceEEEeccccccceEEEeeee
Confidence            2345556666667777777655432211110000         001244455666655 4699999998777665544 8


Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816          471 ADEVFAVDWSPDGEKVASGGKDRVLK  496 (500)
Q Consensus       471 ~~~V~~l~~s~dg~~l~s~~~D~~v~  496 (500)
                      ...++.++|++||..|+..|.||..-
T Consensus       342 y~~iTDiaws~dg~~l~vSS~DGyCS  367 (434)
T KOG1009|consen  342 YSAITDIAWSDDGSVLLVSSTDGFCS  367 (434)
T ss_pred             eeeecceeecCCCcEEEEeccCCceE
Confidence            89999999999999999999998654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=4.9e-22  Score=170.45  Aligned_cols=313  Identities=22%  Similarity=0.390  Sum_probs=215.5

Q ss_pred             ccCCcccEEEEEEcC----CCCeEEEEeCCCcEEEEeCCCCceeEEe-----cCCCCCEEEEEEcCC----CCEEEEEeC
Q 010816          104 IAGHTEAVLSVAFSP----DGRQLASGSGDTTVRLWDLNTQTPMFKC-----TGHKNWVLCIAWSAD----GKHLVSGSK  170 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp----~~~~lat~~~d~~i~iwd~~~~~~~~~~-----~~h~~~v~~v~~s~~----~~~l~s~~~  170 (500)
                      ..+|..+|..++|++    +...+++..+...+.||.......+..+     ..|......++|+-|    ..+||.|+.
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~  113 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY  113 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence            457899999999985    2333444445567899987654322211     246777888888754    347889999


Q ss_pred             CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---CccccEEEEE
Q 010816          171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVK  247 (500)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---~h~~~v~~~~  247 (500)
                      -|.|++.|+.+++... .+.+|...|+.+.+.|...    ++++++|.|.+||+|++++..|+..+.   ||...|.++.
T Consensus       114 ~GvIrVid~~~~~~~~-~~~ghG~sINeik~~p~~~----qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD  188 (385)
T KOG1034|consen  114 LGVIRVIDVVSGQCSK-NYRGHGGSINEIKFHPDRP----QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD  188 (385)
T ss_pred             eeEEEEEecchhhhcc-ceeccCccchhhhcCCCCC----cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence            9999999999887655 4789999999999998643    489999999999999999999998875   6999999999


Q ss_pred             eCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816          248 WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (500)
Q Consensus       248 ~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (500)
                      |+.++ .|++++.|.+|++|++...+....++.      +..++++         .+..++..+                
T Consensus       189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~------s~~~~~~---------~t~~pfpt~----------------  237 (385)
T KOG1034|consen  189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL------SITYSPN---------KTTRPFPTP----------------  237 (385)
T ss_pred             EcCCCCeeeccCCcceEEEEecChhHHhhhhhh------hcccCCC---------CccCcCCcc----------------
Confidence            99877 689999999999999875332111110      0111111         000001000                


Q ss_pred             CCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceE----------
Q 010816          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKFV----------  395 (500)
Q Consensus       327 ~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~-~~~~~----------  395 (500)
                                   ...+.+.       ..-.-|...|-|+.|-  |.++++-|-++.|..|... -++.+          
T Consensus       238 -------------~~~fp~f-------st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~  295 (385)
T KOG1034|consen  238 -------------KTHFPDF-------STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESAT  295 (385)
T ss_pred             -------------ccccccc-------cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccce
Confidence                         0000000       0112366777777775  6889999999999999872 12111          


Q ss_pred             ---EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccc--ccccC-
Q 010816          396 ---AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK--QDLPG-  469 (500)
Q Consensus       396 ---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~-  469 (500)
                         ..+.-....++-++                         .++.|-+++||.|...|.|.+||++..+..  .++.- 
T Consensus       296 Ti~~~~~~~~c~iWfir-------------------------f~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s  350 (385)
T KOG1034|consen  296 TILGEFDYPMCDIWFIR-------------------------FAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS  350 (385)
T ss_pred             eeeeEeccCccceEEEE-------------------------EeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence               11122222222222                         266788999999999999999999876552  12211 


Q ss_pred             -cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          470 -HADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       470 -h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                       -...|...+||.||..|+...+|++|.-|+
T Consensus       351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             cccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence             235688999999999999999999999886

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1e-21  Score=175.02  Aligned_cols=286  Identities=21%  Similarity=0.352  Sum_probs=197.3

Q ss_pred             EEEEcCCCCeEEEEeC---CCcEEEEeCCCCce-eEEecCC----CCCEEEEEEcC-------CCCEEEEEeCCCeEEEE
Q 010816          113 SVAFSPDGRQLASGSG---DTTVRLWDLNTQTP-MFKCTGH----KNWVLCIAWSA-------DGKHLVSGSKAGELQCW  177 (500)
Q Consensus       113 ~~~~sp~~~~lat~~~---d~~i~iwd~~~~~~-~~~~~~h----~~~v~~v~~s~-------~~~~l~s~~~d~~i~~w  177 (500)
                      .+.+-|+.++++.|-.   ...+.+|=.+...+ ++.  .|    ...-.|+.|..       .|+++|.|..|..|.||
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYv--HHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW  207 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYV--HHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW  207 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeE--ecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence            3456677777776642   23455554433321 211  12    12346777743       36799999999999999


Q ss_pred             eCCCCCc--------------------ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec
Q 010816          178 DPQTGKP--------------------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS  237 (500)
Q Consensus       178 d~~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~  237 (500)
                      |+.--..                    ....-.+|+..|..+.|+...    ...+++||.|.+|++||+.+++|...+.
T Consensus       208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~----~nVLaSgsaD~TV~lWD~~~g~p~~s~~  283 (463)
T KOG0270|consen  208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF----RNVLASGSADKTVKLWDVDTGKPKSSIT  283 (463)
T ss_pred             ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc----ceeEEecCCCceEEEEEcCCCCcceehh
Confidence            9742110                    111234688888888887532    2479999999999999999999999999


Q ss_pred             CccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHH
Q 010816          238 GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (500)
Q Consensus       238 ~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (500)
                      .|...|.++.|.+..  .|++|+.|+++++.|++........-.-...|..+++.+.                       
T Consensus       284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~-----------------------  340 (463)
T KOG0270|consen  284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPH-----------------------  340 (463)
T ss_pred             hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCC-----------------------
Confidence            999999999998753  7999999999999999853221111112234555655542                       


Q ss_pred             HHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCce
Q 010816          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKF  394 (500)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~  394 (500)
                                  ....++++..||+++-+|.+....+...+..|.+.|.++++++. ..++++++.|+.|++|++..-..
T Consensus       341 ------------se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  341 ------------SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             ------------CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence                        24578899999999999999988888999999999999999985 57899999999999999764322


Q ss_pred             EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCcccc
Q 010816          395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQKLK  464 (500)
Q Consensus       395 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~  464 (500)
                      .. ...|.-.+     ....|+                   ++.|+- -++|.|+..+.++|||+.+....
T Consensus       409 ~~-v~~~~~~~-----~rl~c~-------------------~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  409 KS-VKEHSFKL-----GRLHCF-------------------ALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cc-cccccccc-----cceeec-------------------ccCCCcceEEEecCccceEEEeecccChhH
Confidence            11 11121111     111111                   234443 36778888889999999876543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=3.8e-22  Score=185.23  Aligned_cols=359  Identities=21%  Similarity=0.324  Sum_probs=221.9

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEE--ecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeC
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDP  179 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~--~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~~wd~  179 (500)
                      ....|...|..+.|.|-...|+++++|.++++||+++.+....  +.||++.|.+++|.|+. ..+++|+.||.|.|||.
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            3457999999999999667899999999999999998877654  78999999999999965 57889999999999997


Q ss_pred             CCCCc--------------cc--c----------cccCcccceEEEEeeeeecCCCCceEEEEeC-CCcEEEEECCCCeE
Q 010816          180 QTGKP--------------SG--N----------PLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKC  232 (500)
Q Consensus       180 ~~~~~--------------~~--~----------~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~-dg~v~iwd~~~~~~  232 (500)
                      +-...              ..  .          ....+...+.+-  ....+..+...++++|. |+.|++||++...+
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss--vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS--VTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee--eEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence            52210              00  0          011122222220  00112235567888887 99999999998765


Q ss_pred             EEEe--------cCc---cccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCee--EEEeecCCceEEEEEecCcceeeec
Q 010816          233 VICL--------SGH---TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTG  298 (500)
Q Consensus       233 ~~~~--------~~h---~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~  298 (500)
                      ....        .-|   ...+.++.....| +|++.+.|++|..||+..-..  +..+.++.  +..+...        
T Consensus       253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~--~~sf~vk--------  322 (720)
T KOG0321|consen  253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL--NSSFYVK--------  322 (720)
T ss_pred             ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc--cceeeee--------
Confidence            4322        112   2345566655433 566666799999999875321  11121111  1111000        


Q ss_pred             cccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEE
Q 010816          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVAS  377 (500)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~las  377 (500)
                                              .........+++|+.|...++|.+.....+...+.||.-.|++++|.|. -.-+|+
T Consensus       323 ------------------------s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T  378 (720)
T KOG0321|consen  323 ------------------------SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT  378 (720)
T ss_pred             ------------------------eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence                                    0011224579999999999999998888888889999999999999984 345777


Q ss_pred             EeCCCcEEEEeCCCCc--------------eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816          378 ASFDKSIKLWNGTTGK--------------FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL  443 (500)
Q Consensus       378 gs~Dg~i~lwd~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  443 (500)
                      ++.|..+++|++..+-              ....+++|.-.+..+....-....-+.  ............++-.|++.-
T Consensus       379 cSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP~s~a~~~s~~s  456 (720)
T KOG0321|consen  379 CSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSPVSLACSPSGAS  456 (720)
T ss_pred             eccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCccchhcCcCCcc
Confidence            7999999999986542              122445554444433322111111110  000000011111122344333


Q ss_pred             EEEE----ECCCcEEEEECCCcccccc--ccCcccCEEEEEEcCCCCEEEEEeC-----------CCcEEEec
Q 010816          444 LLSG----SKDSTLKVWDIRTQKLKQD--LPGHADEVFAVDWSPDGEKVASGGK-----------DRVLKLWM  499 (500)
Q Consensus       444 l~s~----s~d~~v~iwd~~~~~~~~~--~~~h~~~V~~l~~s~dg~~l~s~~~-----------D~~v~iW~  499 (500)
                      ++.+    +..-.|...+.+..+....  -.+|...|....|++.+..+++.+.           +..++.|.
T Consensus       457 ~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~  529 (720)
T KOG0321|consen  457 DDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPN  529 (720)
T ss_pred             cccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccccc
Confidence            3322    1222355555544333322  2347778888889888878888888           77777764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=1.6e-19  Score=177.23  Aligned_cols=326  Identities=38%  Similarity=0.669  Sum_probs=245.6

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc-eeEEecCCC-CCEEEEEE-cCCCC-EEEEEeC-CCeEEEE
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-PMFKCTGHK-NWVLCIAW-SADGK-HLVSGSK-AGELQCW  177 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~-~~~~~~~h~-~~v~~v~~-s~~~~-~l~s~~~-d~~i~~w  177 (500)
                      .+.+|...|.++.|.+.+..++.++.|+.+.+|+..... ....+.++. ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            456799999999999999999999999999999998876 566666644 37777777 88887 5555455 9999999


Q ss_pred             eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeC-CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EE
Q 010816          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY  255 (500)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~-dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~  255 (500)
                      +..........+..|...+..+.|.|..     ..+++++. |+.+++|++.....+..+.+|...|.++.|.+++. ++
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  214 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDG-----KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI  214 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCC-----CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence            9986222334567888899999887743     36777775 99999999999888888999999999999998874 44


Q ss_pred             -EEeCCCeEEEEeCCCCeeEE-EeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816          256 -TGSQDCTIKVWETTQGKLIR-ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (500)
Q Consensus       256 -t~~~dg~i~lwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (500)
                       +++.|+.|++||...+..+. .+..|.... ...+++.                                    ...++
T Consensus       215 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~------------------------------------~~~~~  257 (466)
T COG2319         215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD------------------------------------GSLLA  257 (466)
T ss_pred             EEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC------------------------------------CCEEE
Confidence             44899999999988777776 466655543 2233332                                    23677


Q ss_pred             EeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe--CCcccEEEEEee
Q 010816          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQIRFE  411 (500)
Q Consensus       334 s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~--~h~~~v~~~~~~  411 (500)
                      +++.|+.+++|+............+|...+.++.|+|++..+++++.|+.+++||..+........  .|...+..+   
T Consensus       258 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  334 (466)
T COG2319         258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL---  334 (466)
T ss_pred             EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEE---
Confidence            899999999999875554233336788999999999999888889999999999998887766655  666655554   


Q ss_pred             eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEE-E
Q 010816          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVAS-G  489 (500)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s-~  489 (500)
                                              .+.+++..++.+ ..|+.+++|++............ ..+..+.+++ ...+.. +
T Consensus       335 ------------------------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~  388 (466)
T COG2319         335 ------------------------SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSG  388 (466)
T ss_pred             ------------------------EECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEe
Confidence                                    332333455555 68899999999887632222222 2288999998 544454 7


Q ss_pred             eCCCcEEEec
Q 010816          490 GKDRVLKLWM  499 (500)
Q Consensus       490 ~~D~~v~iW~  499 (500)
                      +.++.+.+|+
T Consensus       389 ~~~~~~~~~~  398 (466)
T COG2319         389 STDGTVRLWD  398 (466)
T ss_pred             cCCCceEEEe
Confidence            8999999996

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=1.2e-20  Score=176.40  Aligned_cols=270  Identities=14%  Similarity=0.150  Sum_probs=182.9

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCce-EEEEeCCCcEEEEECCCCeEEEEecCccc
Q 010816          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR-FVSASKDGDARIWDVSLRKCVICLSGHTL  241 (500)
Q Consensus       163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~s~s~dg~v~iwd~~~~~~~~~~~~h~~  241 (500)
                      +.+++++.|+.+.+||+.+++.... +..+. .+.++.|.|     +++. +++++.++.|++||..+++.+..+..+..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~-~~~~~-~~~~l~~~~-----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~   74 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRT-FPVGQ-RPRGITLSK-----DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD   74 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEE-EECCC-CCCceEECC-----CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC
Confidence            5788999999999999988875442 33333 345677765     3344 46778899999999998887766655433


Q ss_pred             cEEEEEeCCCCe-EE-EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816          242 AVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (500)
Q Consensus       242 ~v~~~~~~~~~~-l~-t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (500)
                       +..+.|++++. ++ +++.|+.+++||+.+++.+..+... ..+..++++++                           
T Consensus        75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~d---------------------------  125 (300)
T TIGR03866        75 -PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPD---------------------------  125 (300)
T ss_pred             -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCC---------------------------
Confidence             45678888764 44 4556899999999988776665422 22445555554                           


Q ss_pred             hhhhhcCCCCcEEEEeeCCC-eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceEEE
Q 010816          320 RYNKIKGNAPERLVSGSDDF-TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAV  397 (500)
Q Consensus       320 ~~~~~~~~~~~~~~s~s~d~-~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~~~~~  397 (500)
                               +..+++++.++ .+.+||......... . .......+++|+|+|++|+.+ ..|+.|++||+.+++.+..
T Consensus       126 ---------g~~l~~~~~~~~~~~~~d~~~~~~~~~-~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~  194 (300)
T TIGR03866       126 ---------GKIVVNTSETTNMAHFIDTKTYEIVDN-V-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK  194 (300)
T ss_pred             ---------CCEEEEEecCCCeEEEEeCCCCeEEEE-E-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee
Confidence                     34566666654 466778654322111 1 122345789999999988544 5699999999999887665


Q ss_pred             EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCCcEEEEECCCccccccccCcccCEEE
Q 010816          398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDSTLKVWDIRTQKLKQDLPGHADEVFA  476 (500)
Q Consensus       398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd~~~~~~~~~~~~h~~~V~~  476 (500)
                      +..+...+..-                    ......++|+|++++++.+ +.++.+.+||+++++....+. +...+.+
T Consensus       195 ~~~~~~~~~~~--------------------~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~  253 (300)
T TIGR03866       195 ITFEIPGVHPE--------------------AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQ  253 (300)
T ss_pred             eeecccccccc--------------------cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcce
Confidence            54321110000                    0001123679999986554 556789999999888765543 3457899


Q ss_pred             EEEcCCCCEEEEE-eCCCcEEEecC
Q 010816          477 VDWSPDGEKVASG-GKDRVLKLWMG  500 (500)
Q Consensus       477 l~~s~dg~~l~s~-~~D~~v~iW~~  500 (500)
                      ++|+|+|++|+++ +.++.|++|+.
T Consensus       254 ~~~~~~g~~l~~~~~~~~~i~v~d~  278 (300)
T TIGR03866       254 LAFTPDEKYLLTTNGVSNDVSVIDV  278 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEEC
Confidence            9999999999886 56899999973

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.3e-22  Score=178.12  Aligned_cols=233  Identities=24%  Similarity=0.404  Sum_probs=178.8

Q ss_pred             CCeEEEEeCCCcEEEEeCCCC---ceeE------------------EecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEE
Q 010816          120 GRQLASGSGDTTVRLWDLNTQ---TPMF------------------KCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCW  177 (500)
Q Consensus       120 ~~~lat~~~d~~i~iwd~~~~---~~~~------------------~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~w  177 (500)
                      |+++|.|..|..|.|||+.-.   .|..                  ..++|+..|.+++|+.+ ...|||||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            679999999999999997421   1111                  13479999999999875 4689999999999999


Q ss_pred             eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC--CeEE
Q 010816          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIY  255 (500)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~  255 (500)
                      |+.+|++.. .+..|.+.|.++.|+|..    ...+++|+.|++|++.|.+...+....=.-.+.|-.++|.+.  ..++
T Consensus       272 D~~~g~p~~-s~~~~~k~Vq~l~wh~~~----p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~  346 (463)
T KOG0270|consen  272 DVDTGKPKS-SITHHGKKVQTLEWHPYE----PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF  346 (463)
T ss_pred             EcCCCCcce-ehhhcCCceeEEEecCCC----ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence            999998764 466799999999999854    358999999999999999842221111112456888889764  3688


Q ss_pred             EEeCCCeEEEEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816          256 TGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (500)
                      ++..||+++-+|.|.. +.+.+++.|...|.+++++..                                   .+..+++
T Consensus       347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~-----------------------------------~p~~l~t  391 (463)
T KOG0270|consen  347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQ-----------------------------------TPGLLST  391 (463)
T ss_pred             EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCC-----------------------------------CCcceee
Confidence            8999999999999875 889999999999999987653                                   2457899


Q ss_pred             eeCCCeEEEEcCCCCCCCceeeeccc---CcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCce
Q 010816          335 GSDDFTMFLWEPAVSKQPKTRMTGHQ---QLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKF  394 (500)
Q Consensus       335 ~s~d~~v~~wd~~~~~~~~~~~~~h~---~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~  394 (500)
                      ++.|++|++|+.......  ....|.   ....|.++.|+- .++|.|+..+.++|||+.+...
T Consensus       392 ~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  392 ASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             ccccceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            999999999997543321  111221   235677778864 5788899999999999987654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=3.7e-21  Score=162.67  Aligned_cols=255  Identities=19%  Similarity=0.287  Sum_probs=167.3

Q ss_pred             CCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCc--------------ccccccCcccceEEEEeeeeecCCCCce
Q 010816          148 GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKP--------------SGNPLSGHKKWITGISWEPVHLNAPCRR  212 (500)
Q Consensus       148 ~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~  212 (500)
                      .|.+.|.++...+ .|+++++|+.||.|.+||++....              ....-.+|+..|..+.|-|.+    .+.
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D----tGm  116 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID----TGM  116 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec----Cce
Confidence            5889999999987 589999999999999999875431              112346788999999999964    458


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC----CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEE
Q 010816          213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD----GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA  288 (500)
Q Consensus       213 ~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~  288 (500)
                      |.++|.|.++++||.++-+....|.- ...|.+-+++|-    -.+++|..|-.|++.|+..|...+.+.          
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls----------  185 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS----------  185 (397)
T ss_pred             eecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec----------
Confidence            99999999999999999877666542 234555556542    257888899999999998876655544          


Q ss_pred             ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEE
Q 010816          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF  368 (500)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~  368 (500)
                                                                                           ||.+.|.+|.|
T Consensus       186 ---------------------------------------------------------------------GHr~~vlaV~W  196 (397)
T KOG4283|consen  186 ---------------------------------------------------------------------GHRDGVLAVEW  196 (397)
T ss_pred             ---------------------------------------------------------------------cccCceEEEEe
Confidence                                                                                 44555555666


Q ss_pred             CCCCC-EEEEEeCCCcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816          369 SPDGQ-WVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS  446 (500)
Q Consensus       369 sp~g~-~lasgs~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  446 (500)
                      +|... .||+|+.||.||+||++.. .+..++..|.+.-.             .....-......+..++|+.++.++++
T Consensus       197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~-------------p~~~~n~ah~gkvngla~tSd~~~l~~  263 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRP-------------PILKTNTAHYGKVNGLAWTSDARYLAS  263 (397)
T ss_pred             ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccC-------------ccccccccccceeeeeeecccchhhhh
Confidence            66433 3456666666666666543 44445554443100             000000011122333478999999999


Q ss_pred             EECCCcEEEEECCCccccccc-----------------cCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          447 GSKDSTLKVWDIRTQKLKQDL-----------------PGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       447 ~s~d~~v~iwd~~~~~~~~~~-----------------~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      .+.|..+++|+...|+....-                 .+|.+.+..+-.. ++-.|.+...-..|+.|.+
T Consensus       264 ~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~-~~lall~~~sgs~ir~l~~  333 (397)
T KOG4283|consen  264 CGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND-GSLALLNLLEGSFVRRLST  333 (397)
T ss_pred             ccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecC-CeEEEEEccCceEEEeeec
Confidence            999999999999876532110                 1222222222111 3445667777788888863

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=5e-21  Score=171.19  Aligned_cols=288  Identities=19%  Similarity=0.283  Sum_probs=205.3

Q ss_pred             ccCCcccEEEEEEcCCC--CeEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 010816          104 IAGHTEAVLSVAFSPDG--RQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQC  176 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~--~~lat~~~d~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~  176 (500)
                      +.-|.+.|++++|+|..  +++|+|+.-|.|-+||+.++.    .+..+..|.++|.++.|+|. -..+++.|+||+|++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            34578999999999975  478899999999999995432    34567789999999999995 468999999999999


Q ss_pred             EeCCCCCcccc-cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-EEEecCccccEEEEEeCCC--C
Q 010816          177 WDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWGGD--G  252 (500)
Q Consensus       177 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~--~  252 (500)
                      -|++.+..... .+.....++.++     .++.....++.+..=|...+||++++.. ...+.-|...|+.++++|-  .
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~-----d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSL-----DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeec-----cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence            99987632110 111122233333     3344445667777777999999998754 5556678889999999874  4


Q ss_pred             eEEEEeCCCeEEEEeCCCCeeE----EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816          253 VIYTGSQDCTIKVWETTQGKLI----RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (500)
Q Consensus       253 ~l~t~~~dg~i~lwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (500)
                      .++|++.|++.+|||++.-...    -....|...|.+..++|..                                   
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-----------------------------------  381 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG-----------------------------------  381 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-----------------------------------
Confidence            7999999999999998753221    2234588889888888752                                   


Q ss_pred             CcEEEEeeCCCeEEEEcCC---CCCCCceeeeccc----CcE--EEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816          329 PERLVSGSDDFTMFLWEPA---VSKQPKTRMTGHQ----QLV--NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~---~~~~~~~~~~~h~----~~v--~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~  399 (500)
                       ..+++.+.|..|++||..   ....+... -.|.    .++  -...|.|+..++++|-.-..|-++|...++.+..+-
T Consensus       382 -gtl~TT~~D~~IRv~dss~~sa~~~p~~~-I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~  459 (498)
T KOG4328|consen  382 -GTLLTTCQDNEIRVFDSSCISAKDEPLGT-IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH  459 (498)
T ss_pred             -CceEeeccCCceEEeecccccccCCccce-eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc
Confidence             348999999999999973   11112211 1222    222  245799999999999999999999999888766543


Q ss_pred             CCcc-cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCCcEEEEECC
Q 010816          400 GHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDSTLKVWDIR  459 (500)
Q Consensus       400 ~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd~~  459 (500)
                      +-.. .|.                          ++..|+|-+..+++| +.-|.|+||--+
T Consensus       460 ~P~~~tI~--------------------------~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  460 DPESSTIP--------------------------SVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             Cccccccc--------------------------cceeecccccceeccCCccceEEEEecC
Confidence            3221 121                          223688988855554 567888888543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=1.6e-21  Score=170.27  Aligned_cols=243  Identities=22%  Similarity=0.382  Sum_probs=184.1

Q ss_pred             cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC----------------CeEEEEecCccccEEEEEeCC--C
Q 010816          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----------------RKCVICLSGHTLAVTCVKWGG--D  251 (500)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~----------------~~~~~~~~~h~~~v~~~~~~~--~  251 (500)
                      ..|.+.++.+.-.+..   .....++=+..|.|+|||+..                .+.++++.+|...=..+.|+|  .
T Consensus       148 i~h~g~~NRvr~~~~~---~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~  224 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLG---NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT  224 (440)
T ss_pred             cccccccceeeecccC---CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence            3455666665544432   223456668889999999742                346778889998888999998  5


Q ss_pred             CeEEEEeCCCeEEEEeCCCCeeE---EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816          252 GVIYTGSQDCTIKVWETTQGKLI---RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (500)
Q Consensus       252 ~~l~t~~~dg~i~lwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (500)
                      |.+++|..-+.|++|...+|...   +.+.+|...|..+.++|.                                   .
T Consensus       225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSpt-----------------------------------E  269 (440)
T KOG0302|consen  225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPT-----------------------------------E  269 (440)
T ss_pred             cccccCccccceEeeeeccCceeecCccccccccchhhhccCCc-----------------------------------c
Confidence            67899999999999998887653   345668888888887764                                   2


Q ss_pred             CcEEEEeeCCCeEEEEcCCCCC-CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC---CceEEEEeCCccc
Q 010816          329 PERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT---GKFVAVFRGHVGP  404 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~~-~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~---~~~~~~~~~h~~~  404 (500)
                      ...|++||.|++|+|||.+... ........|...|+.++|+.+..+||+|+.||+++|||++.   ++.+..|+-|+.+
T Consensus       270 ~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p  349 (440)
T KOG0302|consen  270 DGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP  349 (440)
T ss_pred             CceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence            3579999999999999998763 33444588999999999999988999999999999999875   6678999999999


Q ss_pred             EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC-CCEEEEEECCCcEEEEECCCccc-----------cccc-----
Q 010816          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD-SRLLLSGSKDSTLKVWDIRTQKL-----------KQDL-----  467 (500)
Q Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~s~d~~v~iwd~~~~~~-----------~~~~-----  467 (500)
                      |+++.                           |+|. ...|++++.|..|.|||+....-           +..+     
T Consensus       350 Itsie---------------------------W~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLL  402 (440)
T KOG0302|consen  350 ITSIE---------------------------WHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLL  402 (440)
T ss_pred             eeEEE---------------------------eccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeE
Confidence            99984                           5664 46788899999999999864211           1111     


Q ss_pred             cCcc--cCEEEEEEcCCC-CEEEEEeCCCcEEEe
Q 010816          468 PGHA--DEVFAVDWSPDG-EKVASGGKDRVLKLW  498 (500)
Q Consensus       468 ~~h~--~~V~~l~~s~dg-~~l~s~~~D~~v~iW  498 (500)
                      --|.  ..|..|.|+++- -.|++.+.|| +.||
T Consensus       403 FVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  403 FVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             EEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            1243  367889999873 4778888888 4444

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=2.2e-20  Score=159.24  Aligned_cols=237  Identities=22%  Similarity=0.267  Sum_probs=171.0

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~  184 (500)
                      --|..++++++|.+ ...+++|+.||.|+.+|+.+++.. .+..|..+|.|+.+++-...+++||.|++|++||.+....
T Consensus        51 ~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~  128 (323)
T KOG1036|consen   51 FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV  128 (323)
T ss_pred             eecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc
Confidence            35899999999988 456899999999999999988764 3557999999999999888999999999999999986433


Q ss_pred             ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec--CccccEEEEEeCCCCe-EEEEeCCC
Q 010816          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGV-IYTGSQDC  261 (500)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~-l~t~~~dg  261 (500)
                      ... +. ....|.++..       .+.+++.|..|..+.+||+++-....+.+  .-...++|+++-|++. ++.++-||
T Consensus       129 ~~~-~d-~~kkVy~~~v-------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG  199 (323)
T KOG1036|consen  129 VGT-FD-QGKKVYCMDV-------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG  199 (323)
T ss_pred             ccc-cc-cCceEEEEec-------cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc
Confidence            322 11 2235666553       34689999999999999998765443222  3356788998887543 66788899


Q ss_pred             eEEEEeCCCCeeEE----EeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          262 TIKVWETTQGKLIR----ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       262 ~i~lwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      .|.+=.+......+    .++-|..                                                     ..
T Consensus       200 RVavE~~d~s~~~~skkyaFkCHr~-----------------------------------------------------~~  226 (323)
T KOG1036|consen  200 RVAVEYFDDSEEAQSKKYAFKCHRL-----------------------------------------------------SE  226 (323)
T ss_pred             eEEEEccCCchHHhhhceeEEeeec-----------------------------------------------------cc
Confidence            88774443321110    0110000                                                     00


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                      +++-                 .--+|++++|+|--+.||||+.||.|.+||+...+-+..+..-...|..+         
T Consensus       227 ~~~~-----------------~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sl---------  280 (323)
T KOG1036|consen  227 KDTE-----------------IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSL---------  280 (323)
T ss_pred             CCce-----------------EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEE---------
Confidence            1110                 01358999999999999999999999999999887766665444444444         


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~  449 (500)
                                        +|+.+|..||.|+.
T Consensus       281 ------------------sfs~dG~~LAia~s  294 (323)
T KOG1036|consen  281 ------------------SFSMDGSLLAIASS  294 (323)
T ss_pred             ------------------EeccCCCeEEEEec
Confidence                              77999999999874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=4.7e-22  Score=196.74  Aligned_cols=248  Identities=21%  Similarity=0.380  Sum_probs=191.0

Q ss_pred             ccEEEEEEcCCCCe----EEEEeCCCcEEEEeCCCC------ceeEEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEE
Q 010816          109 EAVLSVAFSPDGRQ----LASGSGDTTVRLWDLNTQ------TPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCW  177 (500)
Q Consensus       109 ~~V~~~~~sp~~~~----lat~~~d~~i~iwd~~~~------~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~~w  177 (500)
                      ..-..++|.+.|..    ||.|..||.|.+||...-      ..+.++..|++.|..+.|++.+. +||+|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            34567899888775    888899999999997541      23456778999999999999755 99999999999999


Q ss_pred             eCCCCCccccc-ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccc--cEEEEEeCCCC--
Q 010816          178 DPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL--AVTCVKWGGDG--  252 (500)
Q Consensus       178 d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~--  252 (500)
                      |+.+-+..... -......|.+++|+..    ....|++++.+|.+.|||++..+.+..+..|..  .++.+.|+|++  
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrk----vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT  220 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRK----VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT  220 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchh----hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence            99875433222 1224567899999763    335799999999999999999887777665543  35667787765  


Q ss_pred             eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (500)
Q Consensus       253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (500)
                      .+++++.|..                                                                      
T Consensus       221 ql~~As~dd~----------------------------------------------------------------------  230 (1049)
T KOG0307|consen  221 QLLVASGDDS----------------------------------------------------------------------  230 (1049)
T ss_pred             eeeeecCCCC----------------------------------------------------------------------
Confidence            3444444321                                                                      


Q ss_pred             EEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEee
Q 010816          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE  411 (500)
Q Consensus       333 ~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  411 (500)
                           .-.|.+||++....+...+.+|+..|.++.|++.+ .+|++++.|+.|.+|+.++|+.+..+.....++..+   
T Consensus       231 -----~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv---  302 (1049)
T KOG0307|consen  231 -----APVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDV---  302 (1049)
T ss_pred             -----CceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeee---
Confidence                 11355666666666667778999999999999965 899999999999999999999999888777777666   


Q ss_pred             eeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCcc
Q 010816          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQK  462 (500)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~~  462 (500)
                                              .|+|.. .++++++.||.|-||.+....
T Consensus       303 ------------------------~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  303 ------------------------QWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ------------------------eecCCCcchhhhheeccceeeeeeecCC
Confidence                                    356654 488999999999999987643

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=7.8e-21  Score=162.42  Aligned_cols=216  Identities=23%  Similarity=0.317  Sum_probs=149.0

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE
Q 010816          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (500)
Q Consensus       145 ~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i  224 (500)
                      .+++|.+.|++++|+.||++|++++.|++|++|+++.-.     ...|..    +.                       +
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~-----~~eHr~----~R-----------------------~  128 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE-----NKEHRC----IR-----------------------Q  128 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhh-----hhhhhH----hh-----------------------c
Confidence            578999999999999999999999999999999987521     223321    00                       0


Q ss_pred             EECCCCeEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816          225 WDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (500)
Q Consensus       225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (500)
                       +++        .+|   -+.+.|.||-  .+++.-...++++|.+...+.                             
T Consensus       129 -nve--------~dh---pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d-----------------------------  167 (420)
T KOG2096|consen  129 -NVE--------YDH---PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD-----------------------------  167 (420)
T ss_pred             -ccc--------CCC---ceEEEECCCcceEEEEEccCCEEEEEEeeeccc-----------------------------
Confidence             000        122   2445677764  455666777888886532110                             


Q ss_pred             CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC
Q 010816          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (500)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg  382 (500)
                                                      |+....-.-||-      ......|+-.+..+-...++.+|++++.|.
T Consensus       168 --------------------------------G~~~~~~v~~D~------~~f~~kh~v~~i~iGiA~~~k~imsas~dt  209 (420)
T KOG2096|consen  168 --------------------------------GSGSHHFVHIDN------LEFERKHQVDIINIGIAGNAKYIMSASLDT  209 (420)
T ss_pred             --------------------------------CCCCcccccccc------cccchhcccceEEEeecCCceEEEEecCCC
Confidence                                            000001111221      011124555666677777899999999999


Q ss_pred             cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC---
Q 010816          383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR---  459 (500)
Q Consensus       383 ~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~---  459 (500)
                      .|.+|+++ |+.+.........-                           ...+.||+|+++|+++..-.|++|..-   
T Consensus       210 ~i~lw~lk-Gq~L~~idtnq~~n---------------------------~~aavSP~GRFia~~gFTpDVkVwE~~f~k  261 (420)
T KOG2096|consen  210 KICLWDLK-GQLLQSIDTNQSSN---------------------------YDAAVSPDGRFIAVSGFTPDVKVWEPIFTK  261 (420)
T ss_pred             cEEEEecC-Cceeeeeccccccc---------------------------cceeeCCCCcEEEEecCCCCceEEEEEecc
Confidence            99999998 87766543221111                           111569999999999999999999863   


Q ss_pred             Ccc-----ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          460 TQK-----LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       460 ~~~-----~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      .|+     ....+.||...|.+++|||+..+++|+|.||+.|||+
T Consensus       262 dG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwd  306 (420)
T KOG2096|consen  262 DGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD  306 (420)
T ss_pred             CcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence            222     2456899999999999999999999999999999997

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.88  E-value=1.7e-21  Score=162.24  Aligned_cols=287  Identities=21%  Similarity=0.289  Sum_probs=196.2

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      .|.+|.+.|+++.|..+++ |.+|..-|.|++|++.+.+.+..+. .|...|+.+.--|+ +.|.+-+.|..+.+|++.-
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~   86 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY   86 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence            4558999999999988877 8899999999999999988877776 56788999988887 5788999999999999876


Q ss_pred             CCcccccccCcccceEEEEeeeeecCCCCc----eEEEEeCC-CcEEEEECCCCeEEEEe----cCccccEEEEEeCCC-
Q 010816          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCR----RFVSASKD-GDARIWDVSLRKCVICL----SGHTLAVTCVKWGGD-  251 (500)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~s~s~d-g~v~iwd~~~~~~~~~~----~~h~~~v~~~~~~~~-  251 (500)
                      +..    ...|.-.++++.|.+........    .++.-+.. -.+.+-|......+...    .+..+.+.|..+.-+ 
T Consensus        87 s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c  162 (323)
T KOG0322|consen   87 SAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC  162 (323)
T ss_pred             cce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence            542    34456666777776654322111    11110000 00111121111111111    122345666654321 


Q ss_pred             ---CeEEEEeCCCeEEEEeCCCCeeE----------EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816          252 ---GVIYTGSQDCTIKVWETTQGKLI----------RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (500)
Q Consensus       252 ---~~l~t~~~dg~i~lwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (500)
                         -.+++|-++|.+.+||+.++..+          .....|.++|.++.+.+.                          
T Consensus       163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~--------------------------  216 (323)
T KOG0322|consen  163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS--------------------------  216 (323)
T ss_pred             cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh--------------------------
Confidence               14677889999999999987332          233456667777665432                          


Q ss_pred             HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC---ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE
Q 010816          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~---~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~  395 (500)
                                .++-++|+.+..+..|.+......   .....-....|..+.+-||++.+||+++|++||+|+.++++.+
T Consensus       217 ----------~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL  286 (323)
T KOG0322|consen  217 ----------CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL  286 (323)
T ss_pred             ----------hcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch
Confidence                      122345566666666765433111   1111112234788999999999999999999999999999999


Q ss_pred             EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       396 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                      .+++-|.+.+.++                           +|+|+..++|+||.|++|-+|++
T Consensus       287 AVLkyHsagvn~v---------------------------Afspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  287 AVLKYHSAGVNAV---------------------------AFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhhhcceeEE---------------------------EeCCCCchhhhccCCceEEeeec
Confidence            9999999999888                           66999999999999999999986

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=5.4e-20  Score=157.65  Aligned_cols=279  Identities=22%  Similarity=0.325  Sum_probs=199.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----C-cccccccC-------cccceEEEEeeeeec--CCCCceEEEEeC
Q 010816          153 VLCIAWSADGKHLVSGSKAGELQCWDPQTG----K-PSGNPLSG-------HKKWITGISWEPVHL--NAPCRRFVSASK  218 (500)
Q Consensus       153 v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~----~-~~~~~~~~-------~~~~v~~~~~~~~~~--~~~~~~~~s~s~  218 (500)
                      ...+.|+|||..|++-+.|..+++|++-..    + .......-       ....|..-+|.+.-.  .++...+++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            345789999999999999999999986421    0 00001111       123456666765321  233457899999


Q ss_pred             CCcEEEEECCCCeEEEEecC--cccc---EEEEEeCCCCeEEEEeCCCeEEEEeC-CCCeeEEEe--e-----cCCceEE
Q 010816          219 DGDARIWDVSLRKCVICLSG--HTLA---VTCVKWGGDGVIYTGSQDCTIKVWET-TQGKLIREL--K-----GHGHWVN  285 (500)
Q Consensus       219 dg~v~iwd~~~~~~~~~~~~--h~~~---v~~~~~~~~~~l~t~~~dg~i~lwd~-~~~~~~~~~--~-----~~~~~v~  285 (500)
                      +.-|++||.-+++....+++  |...   -.|+.|++||.-+.++..++|++||+ +.|+....+  .     +...-+.
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            99999999999887655543  4433   35789999998777888999999998 666543222  1     1233455


Q ss_pred             EEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEE
Q 010816          286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH  365 (500)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~  365 (500)
                      +++++|..                                   ...++.|+...++-|+.-. ...+...+.+|...|+.
T Consensus       212 c~a~sP~~-----------------------------------~~~~a~gsY~q~~giy~~~-~~~pl~llggh~gGvTh  255 (406)
T KOG2919|consen  212 CFAFSPMD-----------------------------------SKTLAVGSYGQRVGIYNDD-GRRPLQLLGGHGGGVTH  255 (406)
T ss_pred             eeeccCCC-----------------------------------CcceeeecccceeeeEecC-CCCceeeecccCCCeee
Confidence            66666532                                   3357778877776666532 34567788899999999


Q ss_pred             EEECCCCCEEEEEeC-CCcEEEEeCCC-CceEEEEeCCccc-EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC
Q 010816          366 VYFSPDGQWVASASF-DKSIKLWNGTT-GKFVAVFRGHVGP-VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR  442 (500)
Q Consensus       366 l~~sp~g~~lasgs~-Dg~i~lwd~~~-~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  442 (500)
                      +.|.++|+.|.+|+. |-.|-.||++. +..+..+..|.+. --.|.|                         ...|+++
T Consensus       256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~F-------------------------Dld~~~~  310 (406)
T KOG2919|consen  256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILF-------------------------DLDPKGE  310 (406)
T ss_pred             EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEE-------------------------ecCCCCc
Confidence            999999999999976 77899999975 3444455555442 122333                         2368999


Q ss_pred             EEEEEECCCcEEEEECCC-ccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          443 LLLSGSKDSTLKVWDIRT-QKLKQDLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       443 ~l~s~s~d~~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      +|++|+.||.|++||++. +.....+..|.+.|+.|+++|-=..+|+++.-
T Consensus       311 ~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  311 ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            999999999999999988 66677777889999999999987777777653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=4.8e-18  Score=166.77  Aligned_cols=327  Identities=38%  Similarity=0.654  Sum_probs=240.6

Q ss_pred             ccccCCc-ccEEEEEE-cCCCC-eEEEEeC-CCcEEEEeCCC-CceeEEecCCCCCEEEEEEcCCCCEEEEEeC-CCeEE
Q 010816          102 ATIAGHT-EAVLSVAF-SPDGR-QLASGSG-DTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQ  175 (500)
Q Consensus       102 ~~~~gh~-~~V~~~~~-sp~~~-~lat~~~-d~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~  175 (500)
                      ..+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+..|...|.++.|+|++..+++++. |+.++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  181 (466)
T COG2319         102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK  181 (466)
T ss_pred             EEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceE
Confidence            3444433 37777777 88887 5555444 99999999988 6777778899999999999999998988885 99999


Q ss_pred             EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE-EecCccccEEEEEeCCCC-e
Q 010816          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDG-V  253 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~-~  253 (500)
                      +|+...+.... .+.+|...+.++.|.|...    ..+++++.|+.+++||...+.... .+.+|.... ...|++++ .
T Consensus       182 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~----~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  255 (466)
T COG2319         182 LWDLRTGKPLS-TLAGHTDPVSSLAFSPDGG----LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSL  255 (466)
T ss_pred             EEEcCCCceEE-eeccCCCceEEEEEcCCcc----eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCE
Confidence            99998754433 4566899999999985321    245555999999999999888877 688888775 44788886 7


Q ss_pred             EEEEeCCCeEEEEeCCCCee-EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816          254 IYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (500)
Q Consensus       254 l~t~~~dg~i~lwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (500)
                      +++++.|+.+++|+...... +..+..|...+.++.+.|+                                    ...+
T Consensus       256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------------------~~~~  299 (466)
T COG2319         256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD------------------------------------GKLL  299 (466)
T ss_pred             EEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCC------------------------------------CCEE
Confidence            78899999999999986654 4444566777777766652                                    2356


Q ss_pred             EEeeCCCeEEEEcCCCCCCCceee-ecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceEEEEeCCcccEEEEEe
Q 010816          333 VSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (500)
Q Consensus       333 ~s~s~d~~v~~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~  410 (500)
                      ++++.|+.+.+||........... ..|...+..+.|.+++..++.+ ..|+.+++|+............... +..+  
T Consensus       300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~--  376 (466)
T COG2319         300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSV--  376 (466)
T ss_pred             EEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEE--
Confidence            668888889999765443322222 4677789999994343556555 6889999999987762222222111 2222  


Q ss_pred             eeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE-EECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEE
Q 010816          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS-GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG  489 (500)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~  489 (500)
                                               .+++ ...+.. +..++.+.+|+............+...+....+++++..++++
T Consensus       377 -------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (466)
T COG2319         377 -------------------------SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG  430 (466)
T ss_pred             -------------------------EECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEe
Confidence                                     3455 333333 7889999999999887766655543678999999999999999


Q ss_pred             eCCCcEEEec
Q 010816          490 GKDRVLKLWM  499 (500)
Q Consensus       490 ~~D~~v~iW~  499 (500)
                      +.++.+++|.
T Consensus       431 ~~~~~~~~~~  440 (466)
T COG2319         431 SSDNTIRLWD  440 (466)
T ss_pred             cCCCcEEEEe
Confidence            9999999996

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=5e-20  Score=157.29  Aligned_cols=290  Identities=19%  Similarity=0.291  Sum_probs=193.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE
Q 010816          153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC  232 (500)
Q Consensus       153 v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~  232 (500)
                      ..|+.|++.|.+||+|+.||.|.+||..+.+ ....+.+|..+|++++|++     +++.++++|.|..|++||+..+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~-----dgr~LltsS~D~si~lwDl~~gs~   99 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSR-----DGRKLLTSSRDWSIKLWDLLKGSP   99 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecC-----CCCEeeeecCCceeEEEeccCCCc
Confidence            6899999999999999999999999998876 4457899999999999987     568999999999999999999998


Q ss_pred             EEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCH
Q 010816          233 VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (500)
Q Consensus       233 ~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (500)
                      +..++ ..++|+.+.|.|..  ..++.-.+..-.+-++..++         +.+  +..+++..+...+ +         
T Consensus       100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~---------h~~--Lp~d~d~dln~sa-s---------  157 (405)
T KOG1273|consen  100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK---------HSV--LPKDDDGDLNSSA-S---------  157 (405)
T ss_pred             eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc---------eee--ccCCCcccccccc-c---------
Confidence            77654 45788888888743  33333222222222322211         001  1111111000000 0         


Q ss_pred             HHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc-cCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (500)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~  389 (500)
                                 .......++++++|...|.+.++|....+. ...+.-. ...|..+-|+..|+.|+.-+.|+.||.|+.
T Consensus       158 -----------~~~fdr~g~yIitGtsKGkllv~~a~t~e~-vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~  225 (405)
T KOG1273|consen  158 -----------HGVFDRRGKYIITGTSKGKLLVYDAETLEC-VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI  225 (405)
T ss_pred             -----------cccccCCCCEEEEecCcceEEEEecchhee-eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence                       001123467899999999999999654322 2222111 256888999999999999999999999997


Q ss_pred             CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEEEECCCcccccccc
Q 010816          390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLP  468 (500)
Q Consensus       390 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~  468 (500)
                      +.--..    |..+.+.     ..+.      +..+++-... -...||.+|.++.+|+. -..++||....|.+++.+.
T Consensus       226 ~di~~~----~r~~e~e-----~~~K------~qDvVNk~~W-k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh  289 (405)
T KOG1273|consen  226 SDIDDE----GRDGEVE-----PEHK------LQDVVNKLQW-KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH  289 (405)
T ss_pred             hhhccc----CccCCcC-----hhHH------HHHHHhhhhh-hheeecCCccEEEeccccceeEEEEecCCcceeeeec
Confidence            631100    0000000     0000      0000000000 01246889999888774 4579999999999999999


Q ss_pred             Ccc-cCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          469 GHA-DEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       469 ~h~-~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |.+ .....+.|+|-...+++- +.|++++|.
T Consensus       290 G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  290 GTKGEELLDVNWHPVRPIIASI-ASGVVYIWA  320 (405)
T ss_pred             CCchhheeecccccceeeeeec-cCCceEEEE
Confidence            887 467789999998888888 778999995

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=5.3e-20  Score=155.31  Aligned_cols=250  Identities=20%  Similarity=0.330  Sum_probs=186.1

Q ss_pred             cccccCCcccEEEEEEcCCCC-eEEEEeCC-------CcEEEEeCCCCc---------eeEEec-CCCCCEEEEEEcCCC
Q 010816          101 SATIAGHTEAVLSVAFSPDGR-QLASGSGD-------TTVRLWDLNTQT---------PMFKCT-GHKNWVLCIAWSADG  162 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~-~lat~~~d-------~~i~iwd~~~~~---------~~~~~~-~h~~~v~~v~~s~~~  162 (500)
                      ...+..|.+.|+.++-+|-.+ .|+|+-.+       ..+.||.+....         ++..+. .+-+.|.|+.|.|++
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            345667889999999999665 45555331       247899985421         222332 455689999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCCcccc-----cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec
Q 010816          163 KHLVSGSKAGELQCWDPQTGKPSGN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS  237 (500)
Q Consensus       163 ~~l~s~~~d~~i~~wd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~  237 (500)
                      +.|++-. |..|.+|++..+..+..     ...++....++-.|+|.+   ++..++ ...|++++.||+++.++...+.
T Consensus       136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH---dgnqv~-tt~d~tl~~~D~RT~~~~~sI~  210 (370)
T KOG1007|consen  136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH---DGNQVA-TTSDSTLQFWDLRTMKKNNSIE  210 (370)
T ss_pred             CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC---ccceEE-EeCCCcEEEEEccchhhhcchh
Confidence            9999876 89999999987765221     123356677888999865   344454 4568999999999988776654


Q ss_pred             -CccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHH
Q 010816          238 -GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (500)
Q Consensus       238 -~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (500)
                       +|...|..+.|+|+.  .|++|+.||.||+||.+..+ .++++.+|.+||.++.+.|..                    
T Consensus       211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h--------------------  270 (370)
T KOG1007|consen  211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH--------------------  270 (370)
T ss_pred             hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc--------------------
Confidence             688889999999975  58999999999999998654 688999999999999988752                    


Q ss_pred             HHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC----------------------------CCceeeecccCcEEE
Q 010816          314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK----------------------------QPKTRMTGHQQLVNH  365 (500)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~----------------------------~~~~~~~~h~~~v~~  365 (500)
                                     .+.+++|+.|..|.+|....-.                            .....+..|.+.|.+
T Consensus       271 ---------------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~  335 (370)
T KOG1007|consen  271 ---------------DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA  335 (370)
T ss_pred             ---------------ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE
Confidence                           3568888888888888532100                            011245679999999


Q ss_pred             EEECCCC-CEEEEEeCCCcEEEEeCC
Q 010816          366 VYFSPDG-QWVASASFDKSIKLWNGT  390 (500)
Q Consensus       366 l~~sp~g-~~lasgs~Dg~i~lwd~~  390 (500)
                      ++||.-. =.+|+-|+||++.|=.+.
T Consensus       336 ~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  336 LAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             EeeccCCCeeEEEeccCceEEeecCC
Confidence            9999854 567888999998876543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=7.3e-21  Score=188.43  Aligned_cols=278  Identities=23%  Similarity=0.464  Sum_probs=200.7

Q ss_pred             EEEEcCCCC-eEEEE----------eCCCcEEEEeCCCCc------eeEEecCCCCCEEEEEEcCCCCE----EEEEeCC
Q 010816          113 SVAFSPDGR-QLASG----------SGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKH----LVSGSKA  171 (500)
Q Consensus       113 ~~~~sp~~~-~lat~----------~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~v~~s~~~~~----l~s~~~d  171 (500)
                      .++|+|++. ++|+|          +.+.++.||.+.-..      +...+. -.....+++|.+.|..    ||.|..|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence            367888776 55544          335567777654222      222221 2346789999987765    8888999


Q ss_pred             CeEEEEeCCCC---C--cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec--CccccEE
Q 010816          172 GELQCWDPQTG---K--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVT  244 (500)
Q Consensus       172 ~~i~~wd~~~~---~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~--~h~~~v~  244 (500)
                      |.|-+||...-   .  ........|++.|.++.|++...    ..+++|+.||.|.|||+.+-+......  .....|.
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~----nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~  165 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG----NLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK  165 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC----ceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence            99999998652   1  12234577999999999988543    489999999999999998765544442  1345688


Q ss_pred             EEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816          245 CVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (500)
Q Consensus       245 ~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (500)
                      +++|+..  .+|++++.+|.+.|||++..+.+-.+..+                                          
T Consensus       166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~------------------------------------------  203 (1049)
T KOG0307|consen  166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT------------------------------------------  203 (1049)
T ss_pred             EeccchhhhHHhhccCCCCCceeccccCCCcccccccC------------------------------------------
Confidence            8888743  35777777888888887754322111100                                          


Q ss_pred             hhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCC---cEEEEeCCC-CceEEE
Q 010816          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDK---SIKLWNGTT-GKFVAV  397 (500)
Q Consensus       323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg---~i~lwd~~~-~~~~~~  397 (500)
                                                         +....+..++|+|+. ..|++++.|.   .|.+||++- -..+++
T Consensus       204 -----------------------------------~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~  248 (1049)
T KOG0307|consen  204 -----------------------------------PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI  248 (1049)
T ss_pred             -----------------------------------CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence                                               001236778999975 4566665543   699999875 345778


Q ss_pred             EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCccccccccCcccCEEE
Q 010816          398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFA  476 (500)
Q Consensus       398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~  476 (500)
                      +++|...|.++                           +|++.+ ++|++++.|+.|.+|+.++++.+..++...+.++.
T Consensus       249 ~~~H~~Gilsl---------------------------sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd  301 (1049)
T KOG0307|consen  249 LEGHQRGILSL---------------------------SWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD  301 (1049)
T ss_pred             hcccccceeee---------------------------ccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence            89999888777                           677766 89999999999999999999999999888889999


Q ss_pred             EEEcCCCC-EEEEEeCCCcEEEec
Q 010816          477 VDWSPDGE-KVASGGKDRVLKLWM  499 (500)
Q Consensus       477 l~~s~dg~-~l~s~~~D~~v~iW~  499 (500)
                      +.|.|... .++.++-||.|-|+.
T Consensus       302 v~w~pr~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  302 VQWCPRNPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             eeecCCCcchhhhheeccceeeee
Confidence            99999876 778889999998863

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.85  E-value=3.1e-20  Score=167.87  Aligned_cols=193  Identities=19%  Similarity=0.340  Sum_probs=145.4

Q ss_pred             ccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCee--EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHH
Q 010816          241 LAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (500)
Q Consensus       241 ~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (500)
                      ..|+++...+|| .|++|+.-.++.|||+.....  ..++........+++++++                         
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD-------------------------  520 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD-------------------------  520 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc-------------------------
Confidence            345566666776 588999999999999875432  2222222223334444443                         


Q ss_pred             HHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 010816          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV  397 (500)
Q Consensus       318 ~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~  397 (500)
                                 ....+++..||.|.+||+... .....+.||++.+.|+.+++||..|-+|+.|++||.||+++++.+..
T Consensus       521 -----------akvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq  588 (705)
T KOG0639|consen  521 -----------AKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ  588 (705)
T ss_pred             -----------cceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh
Confidence                       234678889999999998653 45677899999999999999999999999999999999999876532


Q ss_pred             EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEE
Q 010816          398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAV  477 (500)
Q Consensus       398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l  477 (500)
                      .. ...-|.+                           +.++|++.+||.|-..+.|.|-.....+ ...+.-|.+-|.+|
T Consensus       589 hd-F~SQIfS---------------------------Lg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSl  639 (705)
T KOG0639|consen  589 HD-FSSQIFS---------------------------LGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSL  639 (705)
T ss_pred             hh-hhhhhee---------------------------cccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEE
Confidence            21 1122222                           2468999999999999999888775543 34556688899999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEec
Q 010816          478 DWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       478 ~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      .|.+-|+|+++.|.|+.+..|.
T Consensus       640 KFa~cGkwfvStGkDnlLnawr  661 (705)
T KOG0639|consen  640 KFAYCGKWFVSTGKDNLLNAWR  661 (705)
T ss_pred             EecccCceeeecCchhhhhhcc
Confidence            9999999999999999998885

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=2.1e-19  Score=167.91  Aligned_cols=272  Identities=22%  Similarity=0.413  Sum_probs=193.5

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  189 (500)
                      .|..++|-|||..|+.+.+| .+.|||...+..+..+++|.+.|.|++|+.||+.+|||+.|+.|.+|+..-   .+...
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILK   89 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceee
Confidence            78999999999988877544 699999999999999999999999999999999999999999999998643   23345


Q ss_pred             cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeC
Q 010816          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWET  268 (500)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~  268 (500)
                      ..|.+.|.++.|+|..     ..+++++-. ..-+|........+  ......|.+.+|..||. ++.|-.||+|.+=+.
T Consensus        90 YSH~D~IQCMsFNP~~-----h~LasCsLs-dFglWS~~qK~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk  161 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPIT-----HQLASCSLS-DFGLWSPEQKSVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNK  161 (1081)
T ss_pred             eccCCeeeEeecCchH-----HHhhhcchh-hccccChhhhhHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence            6799999999999864     356666542 34566554322111  11235677888988885 566888888877532


Q ss_pred             CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCC
Q 010816          269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV  348 (500)
Q Consensus       269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~  348 (500)
                       +|+..-.                                                                        
T Consensus       162 -~gEek~~------------------------------------------------------------------------  168 (1081)
T KOG1538|consen  162 -NGEEKVK------------------------------------------------------------------------  168 (1081)
T ss_pred             -CCCcceE------------------------------------------------------------------------
Confidence             1111100                                                                        


Q ss_pred             CCCCceeeecccCcEEEEEECCCC-----CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816          349 SKQPKTRMTGHQQLVNHVYFSPDG-----QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY  423 (500)
Q Consensus       349 ~~~~~~~~~~h~~~v~~l~~sp~g-----~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  423 (500)
                          ..+..|...+|.+++|+|..     ..+++..+..++..|.+. |+.+..       -..+.|+            
T Consensus       169 ----I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk-------~r~L~Fd------------  224 (1081)
T KOG1538|consen  169 ----IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGK-------DRALNFD------------  224 (1081)
T ss_pred             ----EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecc-------cccCCCC------------
Confidence                01112334567788888742     367777777777777663 333221       1111121            


Q ss_pred             eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                              ...+++.++|.+++.|+.|+.+++|- +.|-.+.++......||.|...|+++..+.|..||+|-.++
T Consensus       225 --------P~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  225 --------PCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             --------chhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence                    11235679999999999999999995 44555566655667899999999999999999999997653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.6e-18  Score=141.74  Aligned_cols=278  Identities=17%  Similarity=0.293  Sum_probs=185.4

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC----------CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~----------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      ..|.+-+++|.+++|+.|..+|.|.+..+.+          +.++...++|.++|+.+.|.  ..+|++|+ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            3567778999999999999999999998752          34456678999999999997  35777876 59999998


Q ss_pred             CCCCCc-------ccccccCcc-----cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEE
Q 010816          179 PQTGKP-------SGNPLSGHK-----KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV  246 (500)
Q Consensus       179 ~~~~~~-------~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~  246 (500)
                      .+....       ......-|.     -.|+++...|..     +.++.++.|+.++-||+++++...+++||+..|.++
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-----nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v  162 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-----NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV  162 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-----CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee
Confidence            753321       001111222     234555554432     346677799999999999999999999999999999


Q ss_pred             Ee-CCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhc
Q 010816          247 KW-GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (500)
Q Consensus       247 ~~-~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (500)
                      .- +.++.+++|+.||++|+||+++++.++.+....++                                          
T Consensus       163 v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~------------------------------------------  200 (325)
T KOG0649|consen  163 VGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP------------------------------------------  200 (325)
T ss_pred             eecccCcceeecCCCccEEEEeccccceeEEeccccCh------------------------------------------
Confidence            87 56789999999999999999999887765421110                                          


Q ss_pred             CCCCcEEEEeeCCCeEEEEcCCCCCCCceeee-cccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc
Q 010816          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP  404 (500)
Q Consensus       326 ~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~  404 (500)
                                                  ..+. ....+|.+++.+  ..++++|+ ...+.+|++++.++..++.- .++
T Consensus       201 ----------------------------~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpi-pa~  248 (325)
T KOG0649|consen  201 ----------------------------NLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPI-PAR  248 (325)
T ss_pred             ----------------------------hhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEec-ccc
Confidence                                        0000 112456666543  55777664 34688888888777665531 112


Q ss_pred             EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCC
Q 010816          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE  484 (500)
Q Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~  484 (500)
                      +..+.|                             ..+.+++++..+.|.-|.+. +.+....++.....++.+|+..--
T Consensus       249 v~~v~F-----------------------------~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~  298 (325)
T KOG0649|consen  249 VHLVDF-----------------------------VDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPI  298 (325)
T ss_pred             eeEeee-----------------------------ecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCce
Confidence            222221                             34567777777778888654 333333344334456666654433


Q ss_pred             -EEEEEeCCCcEEEe
Q 010816          485 -KVASGGKDRVLKLW  498 (500)
Q Consensus       485 -~l~s~~~D~~v~iW  498 (500)
                       .|-.+|-.+++.|.
T Consensus       299 k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  299 KFISIAGFSNKLHIL  313 (325)
T ss_pred             EEEEecccceeeeee
Confidence             44445666666664

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.84  E-value=6.6e-21  Score=182.02  Aligned_cols=276  Identities=26%  Similarity=0.428  Sum_probs=202.0

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      ...|.||..+|.|+.|...|.++++|+.|..++||..++..++..+.||.+.|+.++.+.+..+++++|.|..|++|.+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC----ccccEEEEEeCCCCeEEE
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG----HTLAVTCVKWGGDGVIYT  256 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~l~t  256 (500)
                      .+..+. .+.+|++.|++++|+|         +.+.+.||++++||.+....++.-..    ...-+.++.|..+     
T Consensus       263 ~~~pvs-vLrghtgavtaiafsP---------~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~-----  327 (1113)
T KOG0644|consen  263 DGAPVS-VLRGHTGAVTAIAFSP---------RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN-----  327 (1113)
T ss_pred             CCchHH-HHhccccceeeeccCc---------cccCCCCCceEeccccccccccCCCCCCcccccceeeeecccc-----
Confidence            987654 5789999999999998         34778999999999872211111000    0001111111111     


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                                                                                              ...+++++
T Consensus       328 ------------------------------------------------------------------------~~~f~Tgs  335 (1113)
T KOG0644|consen  328 ------------------------------------------------------------------------GDRFLTGS  335 (1113)
T ss_pred             ------------------------------------------------------------------------cccccccc
Confidence                                                                                    12344555


Q ss_pred             CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC  415 (500)
Q Consensus       337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  415 (500)
                      .|+.-..|....       +..+...+.-+.++.+- .+.+++-.+-.+.+|++.+|.+...+.+|..+++-+.+     
T Consensus       336 ~d~ea~n~e~~~-------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~-----  403 (1113)
T KOG0644|consen  336 RDGEARNHEFEQ-------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDV-----  403 (1113)
T ss_pred             CCcccccchhhH-------hhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeee-----
Confidence            555444443211       11122222222222222 34556667788999999999999999999999888755     


Q ss_pred             ecCCCCceeeeeccccceeeEEcC-CCCEEEEEECCCcEEEEECCCccccccc-cCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816          416 FRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDR  493 (500)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~h~~~V~~l~~s~dg~~l~s~~~D~  493 (500)
                                            +| +.+...+++.||...|||+..+..++.. .+| .++..-.||+||..++....-|
T Consensus       404 ----------------------Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hg  460 (1113)
T KOG0644|consen  404 ----------------------HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHG  460 (1113)
T ss_pred             ----------------------cCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCC
Confidence                                  33 4456678999999999999887665543 344 5677889999999999888888


Q ss_pred             cEEEe
Q 010816          494 VLKLW  498 (500)
Q Consensus       494 ~v~iW  498 (500)
                      .++|.
T Consensus       461 ql~i~  465 (1113)
T KOG0644|consen  461 QLYIL  465 (1113)
T ss_pred             ceEEe
Confidence            88875

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1.7e-20  Score=172.15  Aligned_cols=266  Identities=21%  Similarity=0.386  Sum_probs=183.4

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCC--------CCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--------TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~--------~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~  173 (500)
                      .++..|.+.|..++|+|....|++++.|+++++|++.        ..++++++.+|.++|.|+.+.++++++++|+-||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            3677899999999999999999999999999999993        23577899999999999999999999999999999


Q ss_pred             EEEEeCC------CC---CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---Cccc
Q 010816          174 LQCWDPQ------TG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTL  241 (500)
Q Consensus       174 i~~wd~~------~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---~h~~  241 (500)
                      |+.|++-      ..   ......+.||.+.|..+.+++..     .++++++.||++++|+...... .++.   .|..
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-----~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-----DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-----cceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence            9999543      11   12334577899888888876543     4799999999999999865543 1111   1111


Q ss_pred             cEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816          242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (500)
Q Consensus       242 ~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (500)
                       -.++.+.... ++-...+...+.+++.+-....                                              
T Consensus       442 -Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s----------------------------------------------  473 (577)
T KOG0642|consen  442 -PLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVS----------------------------------------------  473 (577)
T ss_pred             -cceEeeccch-hHhhhhhcccccccchhhhhhh----------------------------------------------
Confidence             1122221111 0000001111111111000000                                              


Q ss_pred             hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCC
Q 010816          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (500)
Q Consensus       322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h  401 (500)
                             ...++-.+.+...+                -...++.+..+|.+.+..++..|+.|+++|..+++++.....|
T Consensus       474 -------~~~~~~s~~~~~~~----------------~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~  530 (577)
T KOG0642|consen  474 -------DLLIFESSASPGPR----------------RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH  530 (577)
T ss_pred             -------heeeccccCCCccc----------------ccCccceEEecCCCCeeEecccCCceecccccccccchheeec
Confidence                   00011111111100                0133667788899999999999999999999999999888888


Q ss_pred             cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcc
Q 010816          402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA  471 (500)
Q Consensus       402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~  471 (500)
                      ...+.++                           ++.|+|-+|++++.|+.|++|.+....+......|.
T Consensus       531 ~~svtsl---------------------------ai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  531 KDSVTSL---------------------------AIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cceecce---------------------------eecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            8877776                           558999999999999999999987766655554453

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=7.4e-20  Score=165.04  Aligned_cols=292  Identities=21%  Similarity=0.313  Sum_probs=219.0

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (500)
Q Consensus       144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~  223 (500)
                      ..+.+|.+.|..|.|+..|..|+|||.|..|.+||+..++.......+|...|....|-|.   .++..+++++.||.|+
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~---s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF---SGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCC---CCCcCceeccccCcee
Confidence            4577899999999999999999999999999999999988877778899999988888874   3567899999999999


Q ss_pred             EEECCC-CeE--EEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEee---cCCc---eEEEEEecCc
Q 010816          224 IWDVSL-RKC--VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELK---GHGH---WVNSLALSTE  292 (500)
Q Consensus       224 iwd~~~-~~~--~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~---~~~~---~v~~~~~~~~  292 (500)
                      +=.+.. +.+  ...+..|..+|.-++..|+.  .|++++.|+.+.-+|++++.....+.   .+..   ....++..|.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            887643 322  34456788889888876653  68999999999999998875433221   1111   2233333321


Q ss_pred             ceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC-----ceee------ecccC
Q 010816          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-----KTRM------TGHQQ  361 (500)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~-----~~~~------~~h~~  361 (500)
                                                         ....+++|+.|-.++++|.+.-...     ...+      ....-
T Consensus       293 -----------------------------------nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v  337 (559)
T KOG1334|consen  293 -----------------------------------NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPV  337 (559)
T ss_pred             -----------------------------------CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcc
Confidence                                               2345788888888888886432111     1111      12234


Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCC--C----------ceEE-EEeCCccc--EEEEEeeeeeeecCCCCceeee
Q 010816          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTT--G----------KFVA-VFRGHVGP--VYQIRFELIYCFRYPSNFYCVV  426 (500)
Q Consensus       362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~--~----------~~~~-~~~~h~~~--v~~~~~~~~~~~~~~~~~~~~~  426 (500)
                      .|++++|+.++.=|.++-.|-.|+++.-.-  |          ..+. +++||...  |..+.                 
T Consensus       338 ~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVN-----------------  400 (559)
T KOG1334|consen  338 NITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVN-----------------  400 (559)
T ss_pred             cceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceee-----------------
Confidence            589999998776555556777899995432  3          2233 48888643  33332                 


Q ss_pred             eccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       427 ~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                               .|-|...|+++||.-|.|.||+-.+++.+.-+.|-..-|+||.=+|--..|||+|-|.-||||.
T Consensus       401 ---------FfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  401 ---------FFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             ---------eccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence                     3688999999999999999999999999999988777889999999889999999999999995

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.84  E-value=1.5e-18  Score=161.32  Aligned_cols=138  Identities=29%  Similarity=0.513  Sum_probs=113.3

Q ss_pred             CcEEEEeeCCCeEEEEcCCCCC------CCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceEEEEeCC
Q 010816          329 PERLVSGSDDFTMFLWEPAVSK------QPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~~------~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h  401 (500)
                      .++++.+++||.|++|.+....      .+...+..|...|.++.|+| -...||++++|-+|++||+.+++....+.+|
T Consensus       640 ~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH  719 (1012)
T KOG1445|consen  640 DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH  719 (1012)
T ss_pred             hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC
Confidence            4679999999999999875432      34567889999999999999 4688999999999999999999999999999


Q ss_pred             cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc-cccccCcc-cCEEEEEE
Q 010816          402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGHA-DEVFAVDW  479 (500)
Q Consensus       402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~h~-~~V~~l~~  479 (500)
                      .+.|..+                           +|||+|+.+|+.+.||+|++|+-++++. ++.-.|-. .+--.+.|
T Consensus       720 tdqIf~~---------------------------AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~w  772 (1012)
T KOG1445|consen  720 TDQIFGI---------------------------AWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILW  772 (1012)
T ss_pred             cCceeEE---------------------------EECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEE
Confidence            9999887                           8999999999999999999999877543 22222211 12245667


Q ss_pred             cCCCCEEEEEeCCC
Q 010816          480 SPDGEKVASGGKDR  493 (500)
Q Consensus       480 s~dg~~l~s~~~D~  493 (500)
                      --||++++..|.|+
T Consensus       773 acdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  773 ACDGRIVIVVGFDK  786 (1012)
T ss_pred             EecCcEEEEecccc
Confidence            78999999988875

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=1.9e-19  Score=150.13  Aligned_cols=305  Identities=17%  Similarity=0.251  Sum_probs=191.4

Q ss_pred             ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (500)
Q Consensus       141 ~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg  220 (500)
                      .|.+.+.+|...|+|+.|..++ +|.+|..-|.|++|++.+.+.....--.+...|+.+.-.|      ++.+.+-+.|.
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p------~d~l~tqgRd~   77 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP------NDSLDTQGRDP   77 (323)
T ss_pred             CCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecC------CcchhhcCCCc
Confidence            4567788999999999998776 5999999999999999887654432225566676665433      35788899999


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCC-eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC-TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg-~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (500)
                      .+.+|++.....+.   -|.-.+.++.|.+-. +...+... ..-.++-+.-...+..  ....-..+.+.++....   
T Consensus        78 ~L~lw~ia~s~~i~---i~Si~~nslgFCrfS-l~~~~k~~eqll~yp~rgsde~h~~--D~g~~tqv~i~dd~~~~---  148 (323)
T KOG0322|consen   78 LLILWTIAYSAFIS---IHSIVVNSLGFCRFS-LVKKPKNSEQLLEYPSRGSDETHKQ--DGGDTTQVQIADDSERS---  148 (323)
T ss_pred             eEEEEEccCcceEE---Eeeeeccccccccce-eccCCCcchhheecCCcccchhhhh--ccCccceeEccCchhcc---
Confidence            99999998755443   244455556554321 11111111 1111111110000000  00000011111110000   


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC---------CceeeecccCcEEEEEECC
Q 010816          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---------PKTRMTGHQQLVNHVYFSP  370 (500)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~---------~~~~~~~h~~~v~~l~~sp  370 (500)
                        ..+.....          . ........-.++.|..+|.+.+||+..+..         .......|..+|.++.|.+
T Consensus       149 --Klgsvmc~----------~-~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas  215 (323)
T KOG0322|consen  149 --KLGSVMCQ----------D-KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS  215 (323)
T ss_pred             --ccCceeee----------e-ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech
Confidence              00000000          0 000111123578899999999999876421         1223457899999999998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCC--CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE
Q 010816          371 DGQWVASASFDKSIKLWNGTT--GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS  448 (500)
Q Consensus       371 ~g~~lasgs~Dg~i~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s  448 (500)
                      .-..=++|+.+-.+..|++..  +.+..     ...+ ++        .           .+.+..+...||++.+|+++
T Consensus       216 ~~~rGisgga~dkl~~~Sl~~s~gslq~-----~~e~-~l--------k-----------npGv~gvrIRpD~KIlATAG  270 (323)
T KOG0322|consen  216 SCDRGISGGADDKLVMYSLNHSTGSLQI-----RKEI-TL--------K-----------NPGVSGVRIRPDGKILATAG  270 (323)
T ss_pred             hhcCCcCCCccccceeeeeccccCcccc-----cceE-Ee--------c-----------CCCccceEEccCCcEEeecc
Confidence            766677888888899998753  22210     0000 00        0           01122234579999999999


Q ss_pred             CCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       449 ~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +|+.||||+.++...+..+.-|.+.|.+++|+||-..+|.+|+|.+|-+|.
T Consensus       271 WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  271 WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK  321 (323)
T ss_pred             cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence            999999999999999999999999999999999999999999999999996

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.2e-18  Score=153.18  Aligned_cols=302  Identities=17%  Similarity=0.253  Sum_probs=198.3

Q ss_pred             ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCC------CCceeEEe-cCCCCCEEEEEEcCCCCEEEEEeC
Q 010816           98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN------TQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSK  170 (500)
Q Consensus        98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~------~~~~~~~~-~~h~~~v~~v~~s~~~~~l~s~~~  170 (500)
                      +.|.+-+.+|.++|.++.|+.++++||+|+.|..+++|+++      +.+++... ..|..-|.|++|......|.+|..
T Consensus        46 ~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~  125 (609)
T KOG4227|consen   46 PFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER  125 (609)
T ss_pred             chhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence            34566778999999999999999999999999999999975      23444332 235578999999998899999999


Q ss_pred             CCeEEEEeCCCCCcccccccCcc---cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe---EEEEecCccccEE
Q 010816          171 AGELQCWDPQTGKPSGNPLSGHK---KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLAVT  244 (500)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---~~~~~~~h~~~v~  244 (500)
                      +++|.+-|+++.+.+.  ...|+   +.|..+..+|..     ..|++.+.++.|.+||.+..+   .+..+........
T Consensus       126 ~~~VI~HDiEt~qsi~--V~~~~~~~~~VY~m~~~P~D-----N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~  198 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIY--VANENNNRGDVYHMDQHPTD-----NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY  198 (609)
T ss_pred             cceeEeeecccceeee--eecccCcccceeecccCCCC-----ceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence            9999999999876543  22333   478888877753     479999999999999998654   1222222233445


Q ss_pred             EEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816          245 CVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (500)
Q Consensus       245 ~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (500)
                      .+.|+|.  .+|++.+..+-+.+||.+....-         +                                  .++.
T Consensus       199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---------~----------------------------------~~~~  235 (609)
T KOG4227|consen  199 TAEFHPETPALILVNSETGGPNVFDRRMQARP---------V----------------------------------YQRS  235 (609)
T ss_pred             eeeecCCCceeEEeccccCCCCceeeccccch---------H----------------------------------Hhhh
Confidence            5666654  25667777777777776542100         0                                  0000


Q ss_pred             hhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCc
Q 010816          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV  402 (500)
Q Consensus       323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~  402 (500)
                                   .                ...+......-.++.|+|+|+.|.+--....-.+||.-+.++..--..|.
T Consensus       236 -------------~----------------~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N  286 (609)
T KOG4227|consen  236 -------------M----------------FKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN  286 (609)
T ss_pred             -------------c----------------cccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence                         0                00000000112356788988877765444444556655443321111222


Q ss_pred             ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc---------------------
Q 010816          403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ---------------------  461 (500)
Q Consensus       403 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~---------------------  461 (500)
                      ..-|+                ....+    -...|. +..-+++|+.+-.|++|.+...                     
T Consensus       287 ~~GY~----------------N~~T~----KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~  345 (609)
T KOG4227|consen  287 PNGYC----------------NIKTI----KSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF  345 (609)
T ss_pred             CCcce----------------eeeee----eeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhhe
Confidence            21111                11011    111232 3445899999999999987431                     


Q ss_pred             --cccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          462 --KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       462 --~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                        +.+..++||..-+..|.|+|....|++.|-.+.++||.
T Consensus       346 i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  346 IEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             ecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence              11335789999999999999999999999999999994

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=4.7e-19  Score=160.13  Aligned_cols=221  Identities=17%  Similarity=0.247  Sum_probs=176.7

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccccc
Q 010816          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS  190 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  190 (500)
                      -.|++......++++|+..+.|+|||+..+.+...+++|...|++|.++.+..+||+++..|.|.|..+.++......-.
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~  161 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI  161 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence            34555555568999999999999999997777778899999999999999999999999999999999988754332222


Q ss_pred             CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-ecCccccEEEEEeCCCC--eEEEEeCCCeEEEEe
Q 010816          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWE  267 (500)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd  267 (500)
                      +....|.-+.|+|..-    ..+.+++.+|.|.+||+........ ...|..+...++|+|.+  +|++.+.|..|.+||
T Consensus       162 ~sgqsvRll~ys~skr----~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD  237 (673)
T KOG4378|consen  162 DSGQSVRLLRYSPSKR----FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD  237 (673)
T ss_pred             CCCCeEEEeecccccc----eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence            2334555677776432    3577899999999999987766554 35799999999999865  688999999999999


Q ss_pred             CCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816          268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (500)
Q Consensus       268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~  347 (500)
                      .+..+....+. -.++...+++.++                                    +..|+.|+..|.|..||++
T Consensus       238 ~~s~~s~~~l~-y~~Plstvaf~~~------------------------------------G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  238 IRSQASTDRLT-YSHPLSTVAFSEC------------------------------------GTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             cccccccceee-ecCCcceeeecCC------------------------------------ceEEEeecCCceEEEEecc
Confidence            98665544443 2345666666654                                    4578999999999999999


Q ss_pred             CCCCCceeeecccCcEEEEEECCCC
Q 010816          348 VSKQPKTRMTGHQQLVNHVYFSPDG  372 (500)
Q Consensus       348 ~~~~~~~~~~~h~~~v~~l~~sp~g  372 (500)
                      ..+.+......|...|++++|-|..
T Consensus       281 ~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  281 STKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cCCCCceEeeecccceeEEEeeecc
Confidence            9999999999999999999998764

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=6.4e-19  Score=152.31  Aligned_cols=282  Identities=15%  Similarity=0.232  Sum_probs=185.5

Q ss_pred             CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCCccccc-ccCcc-cce
Q 010816          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNP-LSGHK-KWI  196 (500)
Q Consensus       121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~-~~v  196 (500)
                      ..+|++-..|+|++||..++..+..+++|...+..+.|..  ....+.+|+.||+|++||+++.....+. ..++. ...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888999999999999999999999999999999987  3567899999999999999876543322 22333 222


Q ss_pred             EEEEeeeeecCCCCceEEEE----eCCCcEEEEECCCCeE-EEE-ecCccccEEEEEeCCC--CeEEEEeCCCeEEEEeC
Q 010816          197 TGISWEPVHLNAPCRRFVSA----SKDGDARIWDVSLRKC-VIC-LSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWET  268 (500)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~s~----s~dg~v~iwd~~~~~~-~~~-~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~  268 (500)
                      .++.     .+...+.++.|    ..|-.|.+||++..+. +.. ...|...|+++.|.|.  +.|++|+-||-|.|||+
T Consensus       121 ~~ld-----~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  121 ICLD-----LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             eEee-----ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            3332     22233445554    3567899999998766 443 3479999999999875  47999999999999997


Q ss_pred             CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCC
Q 010816          269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV  348 (500)
Q Consensus       269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~  348 (500)
                      .....-                                                                          
T Consensus       196 ~~d~Ee--------------------------------------------------------------------------  201 (376)
T KOG1188|consen  196 KKDNEE--------------------------------------------------------------------------  201 (376)
T ss_pred             CCCcch--------------------------------------------------------------------------
Confidence            542100                                                                          


Q ss_pred             CCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeee
Q 010816          349 SKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD  427 (500)
Q Consensus       349 ~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  427 (500)
                        ......-.|...|.++.|..++ +.|.+-+...+..+|+++.+.....+....     +.+..   .+--.+...+++
T Consensus       202 --DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~-----~~~~d---~r~~~~~dY~I~  271 (376)
T KOG1188|consen  202 --DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPD-----VSADD---LRKEDNCDYVIN  271 (376)
T ss_pred             --hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCcc-----chhhh---HHhhhhhhheee
Confidence              0000111344568888898776 558888999999999999887543322110     00000   000000011111


Q ss_pred             ccccceeeEEcC-CCCEEEEEEC-CCcEEEEEC---CC---ccccccccC-cccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          428 MSCCMSLYSWSA-DSRLLLSGSK-DSTLKVWDI---RT---QKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       428 ~~~~~~~~~~s~-~~~~l~s~s~-d~~v~iwd~---~~---~~~~~~~~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                              ..+| ++.+++.++. -+...++-+   .+   .+....+.| |..-|.++.|.-.+..+.|||+||.+.+|
T Consensus       272 --------~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W  343 (376)
T KOG1188|consen  272 --------EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAW  343 (376)
T ss_pred             --------cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence                    1233 3445555554 455555433   23   233445666 66677888898889999999999999999


Q ss_pred             c
Q 010816          499 M  499 (500)
Q Consensus       499 ~  499 (500)
                      .
T Consensus       344 k  344 (376)
T KOG1188|consen  344 K  344 (376)
T ss_pred             e
Confidence            6

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=7.1e-19  Score=151.19  Aligned_cols=253  Identities=21%  Similarity=0.326  Sum_probs=179.9

Q ss_pred             CCcccEEEEEEcCCC----CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCC
Q 010816          106 GHTEAVLSVAFSPDG----RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       106 gh~~~V~~~~~sp~~----~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~~wd~~  180 (500)
                      .|.+.-..++|+.+.    .+||.|+.-|.|+|.|+.+++....+.+|...|..+.|.|+. ++|++||.|..|++||++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            477788889998753    479999999999999999999998999999999999999974 789999999999999999


Q ss_pred             CCCcccc--cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE------E-------------------
Q 010816          181 TGKPSGN--PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC------V-------------------  233 (500)
Q Consensus       181 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~------~-------------------  233 (500)
                      +..++..  -..+|...|.++.|++     ++.++++++.|.++++|++...+.      .                   
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~-----~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f  241 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSL-----DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF  241 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcC-----CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence            9876532  3578999999999876     557999999999999999873211      0                   


Q ss_pred             ---EEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCC-CCeeEEEeecCCceEEE---EEecCcce-eeeccccCCCC
Q 010816          234 ---ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNS---LALSTEYA-LRTGAFDHTGK  305 (500)
Q Consensus       234 ---~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~-~~~~~~~~~~~~~~v~~---~~~~~~~~-~~~~~~~~~~~  305 (500)
                         .+..-|..+|-|+.|-. +++++-+-++.|..|... -++.+...+......+-   +....... ....++|.   
T Consensus       242 p~fst~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~---  317 (385)
T KOG1034|consen  242 PDFSTTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP---  317 (385)
T ss_pred             ccccccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH---
Confidence               01224666777777765 367888888899999762 11111111111110000   00000000 00001110   


Q ss_pred             CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCc-eeeecc--cCcEEEEEECCCCCEEEEEeCCC
Q 010816          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRMTGH--QQLVNHVYFSPDGQWVASASFDK  382 (500)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~-~~~~~h--~~~v~~l~~sp~g~~lasgs~Dg  382 (500)
                                            ....++.|.+.|.+++||+.....+. ..+..+  ...|...+||.||.+|+..+.|+
T Consensus       318 ----------------------~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~  375 (385)
T KOG1034|consen  318 ----------------------WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG  375 (385)
T ss_pred             ----------------------HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCC
Confidence                                  12347889999999999998765532 222222  35688999999999999999999


Q ss_pred             cEEEEeC
Q 010816          383 SIKLWNG  389 (500)
Q Consensus       383 ~i~lwd~  389 (500)
                      +|.-||.
T Consensus       376 ~Vwrwdr  382 (385)
T KOG1034|consen  376 TVWRWDR  382 (385)
T ss_pred             cEEEEEe
Confidence            9999985

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=1e-17  Score=141.79  Aligned_cols=241  Identities=19%  Similarity=0.256  Sum_probs=171.8

Q ss_pred             cEEEEEEcC--C-CCeEEEEe----CCCcEEEEeCC--CCceeEE-ecCCCCCEEEEEEcCCCC-----EEEEEeCCCeE
Q 010816          110 AVLSVAFSP--D-GRQLASGS----GDTTVRLWDLN--TQTPMFK-CTGHKNWVLCIAWSADGK-----HLVSGSKAGEL  174 (500)
Q Consensus       110 ~V~~~~~sp--~-~~~lat~~----~d~~i~iwd~~--~~~~~~~-~~~h~~~v~~v~~s~~~~-----~l~s~~~d~~i  174 (500)
                      ++.++.|+.  + ..+||.|+    ..+.|.|-.+.  +++.+.. -..|.-+++.+.|.|+.+     +||+.  +..+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~L  123 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFL  123 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeE
Confidence            466777773  3 45788887    34566666543  2322211 126889999999999863     56654  3589


Q ss_pred             EEEeCCC--CCcc------cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe---EEEEecCccccE
Q 010816          175 QCWDPQT--GKPS------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLAV  243 (500)
Q Consensus       175 ~~wd~~~--~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---~~~~~~~h~~~v  243 (500)
                      |+|.+..  ++..      ......+..++++..|+...+    +++.++|-|.+..|||++++.   ....+-+|...|
T Consensus       124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp----~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV  199 (364)
T KOG0290|consen  124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDP----NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV  199 (364)
T ss_pred             EEEeccCcCCceehhhhhccCcccccCCcccccccccCCc----ceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence            9998763  2211      112244667899999987544    589999999999999999863   355678999999


Q ss_pred             EEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecC---CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816          244 TCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGH---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (500)
Q Consensus       244 ~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (500)
                      ..++|..++  .+++.|.||++|+||++.-.....+...   ..+...+++.+..                         
T Consensus       200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD-------------------------  254 (364)
T KOG0290|consen  200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD-------------------------  254 (364)
T ss_pred             eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC-------------------------
Confidence            999998744  6999999999999999875433322211   2334444443321                         


Q ss_pred             HhhhhhcCCCCcEEEEe-eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCC
Q 010816          319 ERYNKIKGNAPERLVSG-SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTT  391 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~-s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~  391 (500)
                                ++.+++- .+...|.+-|++....+..++.+|+..|+.++|.|. ...|++++.|..+.+||+..
T Consensus       255 ----------pnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  255 ----------PNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             ----------chHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence                      2233332 234568889999998999999999999999999995 68999999999999999875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=5.2e-18  Score=166.42  Aligned_cols=295  Identities=21%  Similarity=0.322  Sum_probs=198.8

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCC---CCCEEEEEEcC--CCCEEEEEeCCCeEEEEeCC
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH---KNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h---~~~v~~v~~s~--~~~~l~s~~~d~~i~~wd~~  180 (500)
                      +...+-..+.|+|-...++++.+.-.|+|||.+.++.+..+..+   ...|+.+.+-.  |..+|++|+.||.|+||+--
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            44445667899999999999988889999999988876555433   35688888764  45689999999999999642


Q ss_pred             -CC--Cc--cc--ccccCc----ccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEe
Q 010816          181 -TG--KP--SG--NPLSGH----KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKW  248 (500)
Q Consensus       181 -~~--~~--~~--~~~~~~----~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~  248 (500)
                       ++  +.  +.  ..+.++    .+.-.-+.|..     .++.++++|.-..|+|||....+++..+. +....|+++.-
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-----~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-----QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhh-----hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence             21  11  00  011111    11112234432     34567777778999999998877766543 33445666654


Q ss_pred             CC--CCeEEEEeCCCeEEEEeCCCCe---eEEEeecCCce--EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816          249 GG--DGVIYTGSQDCTIKVWETTQGK---LIRELKGHGHW--VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (500)
Q Consensus       249 ~~--~~~l~t~~~dg~i~lwd~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (500)
                      +.  .+.+++|..||.||+||.+...   .+...+.|..+  |..+.+.+.                             
T Consensus      1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~----------------------------- 1267 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ----------------------------- 1267 (1387)
T ss_pred             cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC-----------------------------
Confidence            43  2478899999999999987653   34555666555  555544332                             


Q ss_pred             hhhcCCCCcEEEEeeCCCeEEEEcCCCC-CCCceeeeccc--C-cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 010816          322 NKIKGNAPERLVSGSDDFTMFLWEPAVS-KQPKTRMTGHQ--Q-LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV  397 (500)
Q Consensus       322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~-~~~~~~~~~h~--~-~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~  397 (500)
                            .-..+++|+.||.|++||++.. .........|-  + ..+++..+++...+|+|+. +.|+||++. |+.+..
T Consensus      1268 ------G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~ 1339 (1387)
T KOG1517|consen 1268 ------GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNI 1339 (1387)
T ss_pred             ------CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcc
Confidence                  1235999999999999999873 22222222332  2 4899999999999999999 999999984 555555


Q ss_pred             EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc
Q 010816          398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK  462 (500)
Q Consensus       398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~  462 (500)
                      ++.+.+....                    .....+.++|+|-.-+||+|+.|.+|.||.....+
T Consensus      1340 ~k~n~~F~~q--------------------~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1340 IKYNPGFMGQ--------------------RIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cccCcccccC--------------------cCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            5433221100                    01123556889999999999999999999765443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=8.3e-18  Score=142.17  Aligned_cols=289  Identities=23%  Similarity=0.301  Sum_probs=193.3

Q ss_pred             CCCcEEEEeCCCCcee---EEecCCCCCEEEEEEcCC-CCEEEEEeCC-------CeEEEEeCCCCCc---------ccc
Q 010816          128 GDTTVRLWDLNTQTPM---FKCTGHKNWVLCIAWSAD-GKHLVSGSKA-------GELQCWDPQTGKP---------SGN  187 (500)
Q Consensus       128 ~d~~i~iwd~~~~~~~---~~~~~h~~~v~~v~~s~~-~~~l~s~~~d-------~~i~~wd~~~~~~---------~~~  187 (500)
                      .|+.|.+-+++.+...   ..+..|.+.|..++-+|- ...|+++-.+       -.+.||.+.....         +..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            4566777666543322   234457788999999885 4556665442       2478998753221         111


Q ss_pred             cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-EEEe-----cCccccEEEEEeCC--CCeEEEEeC
Q 010816          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICL-----SGHTLAVTCVKWGG--DGVIYTGSQ  259 (500)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~-----~~h~~~v~~~~~~~--~~~l~t~~~  259 (500)
                      .-..+.+.+.++.|.|     +..++++.. |..|.+|++..... +..+     .+|....++-+|+|  ++.-+....
T Consensus       118 Ldteavg~i~cvew~P-----ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~  191 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEP-----NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS  191 (370)
T ss_pred             CCHHHhCceeeEEEcC-----CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence            1224556899999998     234566554 88999999987654 2222     23455677788887  556666788


Q ss_pred             CCeEEEEeCCCCeeEEEe-ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          260 DCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       260 dg~i~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      |++++.||+++.+....+ ..|++.|..+.+.|+                                   ....++++++|
T Consensus       192 d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpn-----------------------------------kq~~lvt~gDd  236 (370)
T KOG1007|consen  192 DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPN-----------------------------------KQHILVTCGDD  236 (370)
T ss_pred             CCcEEEEEccchhhhcchhhhhcceeeeccCCCC-----------------------------------ceEEEEEcCCC
Confidence            999999999987665544 468888888887764                                   24578999999


Q ss_pred             CeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                      +.|++||.+..+.+...+.+|..+|.+|.|+|. .++|.+|+.|..|.+|...+-..-          ..+.++.-    
T Consensus       237 gyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE----------~qi~~~~d----  302 (370)
T KOG1007|consen  237 GYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE----------QQIEFEDD----  302 (370)
T ss_pred             ccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc----------cccccccc----
Confidence            999999999999999999999999999999994 678899999999999976432100          01111000    


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEE-EEEeCCCcEE
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLK  496 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-~s~~~D~~v~  496 (500)
                                .       +-+++        .|..=|.=-+.. ..++++..|.+.|++++||.-..++ |+-|-||++-
T Consensus       303 ----------e-------se~e~--------~dseer~kpL~d-g~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  303 ----------E-------SESED--------EDSEERVKPLQD-GQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             ----------c-------ccCcc--------hhhHHhcccccc-cccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence                      0       00000        000001001111 2235667899999999999877775 6779999987


Q ss_pred             E
Q 010816          497 L  497 (500)
Q Consensus       497 i  497 (500)
                      |
T Consensus       357 I  357 (370)
T KOG1007|consen  357 I  357 (370)
T ss_pred             e
Confidence            6

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=1.7e-17  Score=142.42  Aligned_cols=257  Identities=21%  Similarity=0.365  Sum_probs=187.4

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----C--cee-E----Eec-CCCCCEEEEEEc-------CCCCEEEEEeC
Q 010816          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNT-----Q--TPM-F----KCT-GHKNWVLCIAWS-------ADGKHLVSGSK  170 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~-----~--~~~-~----~~~-~h~~~v~~v~~s-------~~~~~l~s~~~  170 (500)
                      ...+.|+|||.-|.+-+.|..+++|++..     +  .++ .    .+. .....|..-+|-       |+..++|+.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            45689999999999999999999999742     1  111 0    111 123457777774       67789999999


Q ss_pred             CCeEEEEeCCCCCcccc-cccCcccce---EEEEeeeeecCCCCceEEEEeCCCcEEEEEC-CCCeE--EEEe-----cC
Q 010816          171 AGELQCWDPQTGKPSGN-PLSGHKKWI---TGISWEPVHLNAPCRRFVSASKDGDARIWDV-SLRKC--VICL-----SG  238 (500)
Q Consensus       171 d~~i~~wd~~~~~~~~~-~~~~~~~~v---~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~-~~~~~--~~~~-----~~  238 (500)
                      |.-|++||.-+|+.... .-..|...+   .++.|+|     ++.+++ ++....|+++|+ +.+.-  +...     .+
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-----DGeqlf-aGykrcirvFdt~RpGr~c~vy~t~~~~k~g  205 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-----DGEQLF-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFG  205 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecC-----CCCeEe-ecccceEEEeeccCCCCCCcchhhhhccccc
Confidence            99999999999975431 112233333   3556655     555554 567889999999 44421  1111     23


Q ss_pred             ccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816          239 HTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (500)
Q Consensus       239 h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (500)
                      ..+.+.|++|+|-.  .++.|+...++-||.-..++.+..+-+|+..|+-+.+.++                        
T Consensus       206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed------------------------  261 (406)
T KOG2919|consen  206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED------------------------  261 (406)
T ss_pred             ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC------------------------
Confidence            36678899999853  6888999999999988888899999999999999998876                        


Q ss_pred             HHHhhhhhcCCCCcEEEEeeC-CCeEEEEcCCCCCCCceeeecccCc-EEE--EEECCCCCEEEEEeCCCcEEEEeCCC-
Q 010816          317 ALERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQL-VNH--VYFSPDGQWVASASFDKSIKLWNGTT-  391 (500)
Q Consensus       317 ~~~~~~~~~~~~~~~~~s~s~-d~~v~~wd~~~~~~~~~~~~~h~~~-v~~--l~~sp~g~~lasgs~Dg~i~lwd~~~-  391 (500)
                                  +++|.+|+. |-.|..||++....+...+..|... --.  ....|+|++||+|+.||.|++||+++ 
T Consensus       262 ------------Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  262 ------------GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL  329 (406)
T ss_pred             ------------cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence                        356777765 7789999999888888888777652 223  45568999999999999999999998 


Q ss_pred             CceEEEEeCCcccEEEEE
Q 010816          392 GKFVAVFRGHVGPVYQIR  409 (500)
Q Consensus       392 ~~~~~~~~~h~~~v~~~~  409 (500)
                      |..+.++..|..-++.+.
T Consensus       330 gn~~sv~~~~sd~vNgvs  347 (406)
T KOG2919|consen  330 GNEVSVTGNYSDTVNGVS  347 (406)
T ss_pred             CCccccccccccccccee
Confidence            666766666666666553

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=2.4e-17  Score=140.65  Aligned_cols=229  Identities=17%  Similarity=0.325  Sum_probs=159.9

Q ss_pred             ccccccCCcccEEEEEEcC--CCCeEEEEeCCCcEEEEeCC--CC-------ceeEEecCCCCCEEEEEEcCC--CCEEE
Q 010816          100 CSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLN--TQ-------TPMFKCTGHKNWVLCIAWSAD--GKHLV  166 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp--~~~~lat~~~d~~i~iwd~~--~~-------~~~~~~~~h~~~v~~v~~s~~--~~~l~  166 (500)
                      |...-+.|.+.|..+.|.+  -|+.+|+++.|++++||.-.  ..       .....+......|+.|.|.|.  |-+||
T Consensus        51 ~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA  130 (361)
T KOG2445|consen   51 CTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLA  130 (361)
T ss_pred             EeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEE
Confidence            3344567999999999965  48999999999999999741  11       122345566788999999995  77899


Q ss_pred             EEeCCCeEEEEeCCCCCc------------ccccccCcccceEEEEeeeeecCCCCceEEEEeCC-----CcEEEEECCC
Q 010816          167 SGSKAGELQCWDPQTGKP------------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSL  229 (500)
Q Consensus       167 s~~~d~~i~~wd~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-----g~v~iwd~~~  229 (500)
                      +++.||.+|||+.-.--.            ...+...+.....+++|+|.....  ..|+.|+.+     +.++||....
T Consensus       131 ~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~--p~iAvgs~e~a~~~~~~~Iye~~e  208 (361)
T KOG2445|consen  131 AASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE--PLIAVGSDEDAPHLNKVKIYEYNE  208 (361)
T ss_pred             EeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccC--ceEEEEcccCCccccceEEEEecC
Confidence            999999999998543211            111233566778899999765432  356776665     4889997653


Q ss_pred             C----eEEEEecCccccEEEEEeCCCC-----eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccc
Q 010816          230 R----KCVICLSGHTLAVTCVKWGGDG-----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (500)
Q Consensus       230 ~----~~~~~~~~h~~~v~~~~~~~~~-----~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (500)
                      .    ..+.++.+|+.+|++++|.|+-     .|++++.|| |+||.+.....  .+..                     
T Consensus       209 ~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s--~i~~---------------------  264 (361)
T KOG2445|consen  209 NGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARS--AIEE---------------------  264 (361)
T ss_pred             CcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccc--hhhh---------------------
Confidence            3    2355678999999999999862     588999999 99998753210  0000                     


Q ss_pred             cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC
Q 010816          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF  380 (500)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~  380 (500)
                                                   +...++..-+.+       .-.....+.+|...|..+.|+-.|..|++.+.
T Consensus       265 -----------------------------ee~~~~~~~~~l-------~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd  308 (361)
T KOG2445|consen  265 -----------------------------EEVLAPDLMTDL-------PVEKVSELDDHNGEVWRVRWNMTGTILSSTGD  308 (361)
T ss_pred             -----------------------------hcccCCCCcccc-------ceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence                                         000011100000       01123345689999999999999999999999


Q ss_pred             CCcEEEEeCC
Q 010816          381 DKSIKLWNGT  390 (500)
Q Consensus       381 Dg~i~lwd~~  390 (500)
                      ||.||+|...
T Consensus       309 DG~VRLWkan  318 (361)
T KOG2445|consen  309 DGCVRLWKAN  318 (361)
T ss_pred             Cceeeehhhh
Confidence            9999999753

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=4.3e-18  Score=156.60  Aligned_cols=227  Identities=20%  Similarity=0.302  Sum_probs=168.8

Q ss_pred             EecCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCC--------eeEEEeecCCceEEEEEecCcceeeeccccCCCC
Q 010816          235 CLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQG--------KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (500)
Q Consensus       235 ~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (500)
                      ++..|...|+++.|.+ .+.|++++.||+|++|++...        +.+.++.+|..+|.|+++.+.             
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n-------------  355 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN-------------  355 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-------------
Confidence            4567888888888875 457999999999999999321        356788999999999988764             


Q ss_pred             CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC------C---CCceeeecccCcEEEEEECCCCCEEE
Q 010816          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS------K---QPKTRMTGHQQLVNHVYFSPDGQWVA  376 (500)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~------~---~~~~~~~~h~~~v~~l~~sp~g~~la  376 (500)
                                             .+.+.+|+.||+|+.|++...      .   .....+.||.+.|+.+++|+....|+
T Consensus       356 -----------------------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll  412 (577)
T KOG0642|consen  356 -----------------------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL  412 (577)
T ss_pred             -----------------------ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee
Confidence                                   467899999999999954321      1   23346789999999999999998999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEeC---CcccEEEEEeeeee----------------eec-------CCCCceeeeeccc
Q 010816          377 SASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQIRFELIY----------------CFR-------YPSNFYCVVDMSC  430 (500)
Q Consensus       377 sgs~Dg~i~lwd~~~~~~~~~~~~---h~~~v~~~~~~~~~----------------~~~-------~~~~~~~~~~~~~  430 (500)
                      +++.||++|+|+...... .+|..   |.-+. .+.+....                ...       +++.........+
T Consensus       413 scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl-svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~  490 (577)
T KOG0642|consen  413 SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL-SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP  490 (577)
T ss_pred             eecCCceEEeeccCCcCc-cccCCccccCCcc-eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence            999999999999876655 22322   22221 11111000                000       0000000011112


Q ss_pred             cceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       431 ~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      .+..+.+.|++.+.+++..|+.|+++|..+++.+.....|...|+++++.|+|-+|++++.||.+++|.
T Consensus       491 ~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k  559 (577)
T KOG0642|consen  491 QINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK  559 (577)
T ss_pred             ccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence            233455688889999999999999999999999999999999999999999999999999999999995

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=1.2e-17  Score=154.47  Aligned_cols=274  Identities=18%  Similarity=0.263  Sum_probs=188.4

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (500)
Q Consensus       144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~  223 (500)
                      ..+.||++.|.|++..|.|..|++|+.||+|++|.+.+|+++....  -...|.+++|+|...   ...+++ +.+..+-
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~---~~vLAv-A~~~~~~  467 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSD---LCVLAV-AVGECVL  467 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCC---ceeEEE-EecCceE
Confidence            4567999999999999999999999999999999999999876432  245789999998542   223443 3333465


Q ss_pred             EEECCCCeEEEEecCccccEEEEEeCCCCeEEEE----eCCCeEEEEeCCCC----eeEEEeecCCceEEEEEecCccee
Q 010816          224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG----SQDCTIKVWETTQG----KLIRELKGHGHWVNSLALSTEYAL  295 (500)
Q Consensus       224 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~----~~dg~i~lwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~  295 (500)
                      |-+...|..+..  +          ..+..|.++    ..|+.+..|.-...    +-++....|...|..+.++..   
T Consensus       468 ivnp~~G~~~e~--~----------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk---  532 (733)
T KOG0650|consen  468 IVNPIFGDRLEV--G----------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK---  532 (733)
T ss_pred             EeCccccchhhh--c----------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC---
Confidence            655443321110  0          001122222    23556677754311    113344456677777777654   


Q ss_pred             eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC---CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC
Q 010816          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG  372 (500)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~---d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g  372 (500)
                                                       +++|++...   ...|.|+++..... +.-+....+.|.++.|+|.-
T Consensus       533 ---------------------------------GDYlatV~~~~~~~~VliHQLSK~~s-Q~PF~kskG~vq~v~FHPs~  578 (733)
T KOG0650|consen  533 ---------------------------------GDYLATVMPDSGNKSVLIHQLSKRKS-QSPFRKSKGLVQRVKFHPSK  578 (733)
T ss_pred             ---------------------------------CceEEEeccCCCcceEEEEecccccc-cCchhhcCCceeEEEecCCC
Confidence                                             345555433   35678887643321 12233334568999999998


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCc
Q 010816          373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST  452 (500)
Q Consensus       373 ~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~  452 (500)
                      .+|+.++. +.|++||+...++++.+......|..+                           +.+|.|.-|+.|+.|+.
T Consensus       579 p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~m---------------------------sihp~GDnli~gs~d~k  630 (733)
T KOG0650|consen  579 PYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSM---------------------------SIHPNGDNLILGSYDKK  630 (733)
T ss_pred             ceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeee---------------------------eecCCCCeEEEecCCCe
Confidence            88877654 689999998877665544333333333                           56899999999999999


Q ss_pred             EEEEECCCc-cccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          453 LKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       453 v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      +..||+.-. +..+.+.-|...|.+|+|++.=..+++|+.||++.|+++
T Consensus       631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence            999998754 566788889999999999999999999999999999875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.1e-17  Score=144.63  Aligned_cols=271  Identities=16%  Similarity=0.248  Sum_probs=186.0

Q ss_pred             EeEEecc--cccccccCCcccEEEEEEcC--CCCeEEEEeCCCcEEEEeCCCCcee--EEecCCC-CCEEEEEEcCCCCE
Q 010816           92 FRIRPVN--RCSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHK-NWVLCIAWSADGKH  164 (500)
Q Consensus        92 ~~~~~~~--~~~~~~~gh~~~V~~~~~sp--~~~~lat~~~d~~i~iwd~~~~~~~--~~~~~h~-~~v~~v~~s~~~~~  164 (500)
                      +++....  +....+++|.+.+..++|..  .+..+.+|+.||+||+||+......  .....|. .+..|++-+-++..
T Consensus        52 v~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~i  131 (376)
T KOG1188|consen   52 VRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNI  131 (376)
T ss_pred             EEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCe
Confidence            4444333  35677899999999999988  4678999999999999999876544  3344555 56788887777778


Q ss_pred             EEEEe----CCCeEEEEeCCCCCc-ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe---EEEEe
Q 010816          165 LVSGS----KAGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICL  236 (500)
Q Consensus       165 l~s~~----~d~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---~~~~~  236 (500)
                      +++|.    .|-.|.+||++..+. ++.....|.+.|+++.|+|..+    ..+++||.||.|.++|+....   .+...
T Consensus       132 i~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p----nlLlSGSvDGLvnlfD~~~d~EeDaL~~v  207 (376)
T KOG1188|consen  132 IACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP----NLLLSGSVDGLVNLFDTKKDNEEDALLHV  207 (376)
T ss_pred             EEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC----CeEEeecccceEEeeecCCCcchhhHHHh
Confidence            88775    367899999988766 6667789999999999999654    489999999999999987542   12222


Q ss_pred             cCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816          237 SGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (500)
Q Consensus       237 ~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (500)
                      -.|...|.++.|.+++  .|.+-+...+..+|++..+.....+....  +.....                      ...
T Consensus       208 iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~--~~~~d~----------------------r~~  263 (376)
T KOG1188|consen  208 INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPD--VSADDL----------------------RKE  263 (376)
T ss_pred             hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCcc--chhhhH----------------------Hhh
Confidence            3566789999999988  79999999999999998876443322110  000000                      000


Q ss_pred             HHHHHhhhhhcCCCCcEEEEeeC-CCeEEEEcCC-----CCCCCceeeec-ccCcEEEEEECCCCCEEEEEeCCCcEEEE
Q 010816          315 KAALERYNKIKGNAPERLVSGSD-DFTMFLWEPA-----VSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (500)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~s~s~-d~~v~~wd~~-----~~~~~~~~~~~-h~~~v~~l~~sp~g~~lasgs~Dg~i~lw  387 (500)
                      ....+..+.......+.++.++. -+...++-+.     ........+.+ |...|+++.|...+.++.||+.||.+.+|
T Consensus       264 ~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W  343 (376)
T KOG1188|consen  264 DNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAW  343 (376)
T ss_pred             hhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence            00011111121222334444433 4555444322     11223344544 78889999999999999999999999999


Q ss_pred             eCC
Q 010816          388 NGT  390 (500)
Q Consensus       388 d~~  390 (500)
                      ..+
T Consensus       344 k~~  346 (376)
T KOG1188|consen  344 KVE  346 (376)
T ss_pred             ecC
Confidence            853

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=1.2e-16  Score=154.48  Aligned_cols=265  Identities=19%  Similarity=0.331  Sum_probs=184.9

Q ss_pred             CcEEEEeCCCC-ceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCcc-----cccccCcccceEEEEee
Q 010816          130 TTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPS-----GNPLSGHKKWITGISWE  202 (500)
Q Consensus       130 ~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~v~~~~~~  202 (500)
                      +.+.||++... .+-..+ .-...|.|+.|+|. ..+|+.|.++|.|.+||++.+...     ......|...+..+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            47999999876 333333 24678999999995 567888999999999999876541     22345788999999998


Q ss_pred             eeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-----ec-------CccccEEEEEeCCC--CeEEEEeCCCeEEEEeC
Q 010816          203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-----LS-------GHTLAVTCVKWGGD--GVIYTGSQDCTIKVWET  268 (500)
Q Consensus       203 ~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-----~~-------~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~  268 (500)
                      ....   ...|+++|.||.|..|+++.-.+...     ..       .-...++++.|.+.  ..++.|+.+|.|.--+.
T Consensus       301 ~~~~---~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r  377 (555)
T KOG1587|consen  301 QNEH---NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR  377 (555)
T ss_pred             ccCC---CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence            6332   25799999999999998865433110     01       12345788888653  36889999999877432


Q ss_pred             CC---Ce-----eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          269 TQ---GK-----LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       269 ~~---~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      ..   +.     .+..+..|..+|.++..+|-+                                   ...|++++ |.+
T Consensus       378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~-----------------------------------~k~fls~g-DW~  421 (555)
T KOG1587|consen  378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY-----------------------------------PKNFLSVG-DWT  421 (555)
T ss_pred             cCCcccccccccccccccccCcceEeeecCCCc-----------------------------------cceeeeec-cce
Confidence            21   11     122344566677777666532                                   12345554 999


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCC
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP  419 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  419 (500)
                      ++||.......+...+..+.+.|.+++|||. ...||++..||.|.+||+..        .+.+|+.+....        
T Consensus       422 vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~--------~~~~Pv~s~~~~--------  485 (555)
T KOG1587|consen  422 VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ--------DDEEPVLSQKVC--------  485 (555)
T ss_pred             eEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc--------cccCCccccccc--------
Confidence            9999866455666666777888999999995 46888999999999999853        334444433221        


Q ss_pred             CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                               ........|+++|++|++|...|++++|++.
T Consensus       486 ---------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  486 ---------SPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             ---------ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence                     1112233678999999999999999999985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=2.7e-17  Score=144.86  Aligned_cols=162  Identities=24%  Similarity=0.411  Sum_probs=133.2

Q ss_pred             ccccCCcccEEEEEEcCC-CCeEEEEeCCCcEEEEeCCCC-------ceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCC
Q 010816          102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAG  172 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~  172 (500)
                      ....||+++|..++|+|- ...||+||.|.+|.||++..+       +++..+.||...|--++|+|. .+.|+|++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            346799999999999995 567999999999999998543       456788999999999999996 46889999999


Q ss_pred             eEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcccc-EEEEEeCCC
Q 010816          173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA-VTCVKWGGD  251 (500)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~  251 (500)
                      +|.+||+.+|+.... +. |...|.+++|+.     ++.++++.+.|+.|||||.++++.+..-.+|.+. -..+.|-.+
T Consensus       155 ~v~iWnv~tgeali~-l~-hpd~i~S~sfn~-----dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~  227 (472)
T KOG0303|consen  155 TVSIWNVGTGEALIT-LD-HPDMVYSMSFNR-----DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS  227 (472)
T ss_pred             eEEEEeccCCceeee-cC-CCCeEEEEEecc-----CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc
Confidence            999999999986543 33 999999999864     6779999999999999999999999887777543 223456667


Q ss_pred             CeEEEEe----CCCeEEEEeCCC
Q 010816          252 GVIYTGS----QDCTIKVWETTQ  270 (500)
Q Consensus       252 ~~l~t~~----~dg~i~lwd~~~  270 (500)
                      +.+++.+    .+..+-+||...
T Consensus       228 g~i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  228 GKIFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             CceeeeccccccccceeccCccc
Confidence            7677655    467789998543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=1.2e-16  Score=140.91  Aligned_cols=201  Identities=23%  Similarity=0.391  Sum_probs=155.0

Q ss_pred             EecCccccEEEEEeCC--CCeEEEEeCCCeEEEEeCCCCe-------eEEEeecCCceEEEEEecCcceeeeccccCCCC
Q 010816          235 CLSGHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQGK-------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (500)
Q Consensus       235 ~~~~h~~~v~~~~~~~--~~~l~t~~~dg~i~lwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (500)
                      .+.||+.+|..++|+|  |..|++||.|.+|.||++..+-       .+..+.+|...|.-++++|.-            
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA------------  143 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA------------  143 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc------------
Confidence            3579999999999987  5589999999999999987653       356778899999999888741            


Q ss_pred             CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEE
Q 010816          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK  385 (500)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~  385 (500)
                                             .+.|++++.|.+|.+|++........ + .|++.|.+++|+.||.+|++.+.|..||
T Consensus       144 -----------------------~NVLlsag~Dn~v~iWnv~tgeali~-l-~hpd~i~S~sfn~dGs~l~TtckDKkvR  198 (472)
T KOG0303|consen  144 -----------------------PNVLLSAGSDNTVSIWNVGTGEALIT-L-DHPDMVYSMSFNRDGSLLCTTCKDKKVR  198 (472)
T ss_pred             -----------------------hhhHhhccCCceEEEEeccCCceeee-c-CCCCeEEEEEeccCCceeeeecccceeE
Confidence                                   34588999999999999877654433 3 3999999999999999999999999999


Q ss_pred             EEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE---CCCcEEEEECCCcc
Q 010816          386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS---KDSTLKVWDIRTQK  462 (500)
Q Consensus       386 lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s---~d~~v~iwd~~~~~  462 (500)
                      |||.++++.+....+|.+.-..-                          ..|-.+|.++.+|-   .+..+-|||-...+
T Consensus       199 v~dpr~~~~v~e~~~heG~k~~R--------------------------aifl~~g~i~tTGfsr~seRq~aLwdp~nl~  252 (472)
T KOG0303|consen  199 VIDPRRGTVVSEGVAHEGAKPAR--------------------------AIFLASGKIFTTGFSRMSERQIALWDPNNLE  252 (472)
T ss_pred             EEcCCCCcEeeecccccCCCcce--------------------------eEEeccCceeeeccccccccceeccCccccc
Confidence            99999999998888887752210                          13456777555553   46788899865433


Q ss_pred             c---cccccCcccCEEEEEEcCCCCEEEEE-eCCCcEEEec
Q 010816          463 L---KQDLPGHADEVFAVDWSPDGEKVASG-GKDRVLKLWM  499 (500)
Q Consensus       463 ~---~~~~~~h~~~V~~l~~s~dg~~l~s~-~~D~~v~iW~  499 (500)
                      .   ...+.. ...|.--=|.||.+.++.+ -.|+.||.|+
T Consensus       253 eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyE  292 (472)
T KOG0303|consen  253 EPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFE  292 (472)
T ss_pred             CcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence            2   334433 3456666688998888755 5689999876

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.77  E-value=3.4e-16  Score=146.71  Aligned_cols=241  Identities=20%  Similarity=0.310  Sum_probs=171.5

Q ss_pred             cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      ....+++||.+.|.|++++.||+++|+|+.|..|.||+-.-.. +... .|++.|.|+.|+|-...|+||+.. ..-+|.
T Consensus        44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS  120 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWS  120 (1081)
T ss_pred             ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHhhhcchh-hccccC
Confidence            4567899999999999999999999999999999999854222 1222 599999999999999999998864 567887


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE--EecCccccEEEEEeCCCC----
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG----  252 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~----  252 (500)
                      .......+   ......+.+.+|..     ++..|+.|-.||+|.|-+-.....+.  .-.|.+.+|.+++|+|..    
T Consensus       121 ~~qK~V~K---~kss~R~~~CsWtn-----DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~  192 (1081)
T KOG1538|consen  121 PEQKSVSK---HKSSSRIICCSWTN-----DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGR  192 (1081)
T ss_pred             hhhhhHHh---hhhheeEEEeeecC-----CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCc
Confidence            76543222   12235677888853     67799999999999988654332222  223578899999998742    


Q ss_pred             --eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816          253 --VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (500)
Q Consensus       253 --~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (500)
                        .++...+..++..+.+. |+.+..-       ..+.+.|.           -.                  -...+++
T Consensus       193 ~di~aV~DW~qTLSFy~Ls-G~~Igk~-------r~L~FdP~-----------Ci------------------sYf~NGE  235 (1081)
T KOG1538|consen  193 NDILAVADWGQTLSFYQLS-GKQIGKD-------RALNFDPC-----------CI------------------SYFTNGE  235 (1081)
T ss_pred             cceEEEEeccceeEEEEec-ceeeccc-------ccCCCCch-----------hh------------------eeccCCc
Confidence              56777777777777664 3322110       01111110           00                  0112467


Q ss_pred             EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (500)
Q Consensus       331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~  389 (500)
                      .++.|+.|+.+.+|...  ......+.....+|++++..|++++++.|+.||+|-.|++
T Consensus       236 y~LiGGsdk~L~~fTR~--GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  236 YILLGGSDKQLSLFTRD--GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EEEEccCCCceEEEeec--CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            89999999999998621  1222334446778999999999999999999999999874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=7.2e-17  Score=142.82  Aligned_cols=125  Identities=33%  Similarity=0.604  Sum_probs=105.3

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCC--------C-----C---ceeEEecCCCCCEEEEEEcCCCCEE
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--------T-----Q---TPMFKCTGHKNWVLCIAWSADGKHL  165 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~--------~-----~---~~~~~~~~h~~~v~~v~~s~~~~~l  165 (500)
                      ..|.+|...|+++.|+|+|.+||+|+.+|.|.+|-..        +     .   .....+.+|...|..++|+|++..+
T Consensus        59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l  138 (434)
T KOG1009|consen   59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFL  138 (434)
T ss_pred             ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCcee
Confidence            5678999999999999999999999999999999765        2     1   1124567899999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE
Q 010816          166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC  232 (500)
Q Consensus       166 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~  232 (500)
                      ++++.|..+++||+..|.... .+..|...+..++|.|..     +.+++-+.|...+.+.+...+.
T Consensus       139 ~s~s~dns~~l~Dv~~G~l~~-~~~dh~~yvqgvawDpl~-----qyv~s~s~dr~~~~~~~~~~~~  199 (434)
T KOG1009|consen  139 VSGSVDNSVRLWDVHAGQLLA-ILDDHEHYVQGVAWDPLN-----QYVASKSSDRHPEGFSAKLKQV  199 (434)
T ss_pred             eeeeccceEEEEEeccceeEe-eccccccccceeecchhh-----hhhhhhccCcccceeeeeeeee
Confidence            999999999999999997654 578899999999999854     4677888888777777655443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.76  E-value=5.8e-17  Score=148.15  Aligned_cols=266  Identities=16%  Similarity=0.255  Sum_probs=178.3

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeee----cCCCCceEEEEeCCCcEE
Q 010816          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH----LNAPCRRFVSASKDGDAR  223 (500)
Q Consensus       148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~s~s~dg~v~  223 (500)
                      .|..-|.|+.|+.+...+.+++++..+.-||+.+.....  ..-....+...-+ +..    -......|+.++.||.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~--~~~p~df~pt~~h-~~~rs~~~g~~~d~~~i~s~DGkf~   88 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEV--AKLPDDFVPTDMH-LGGRSSGGGKGSDTLLICSNDGRFV   88 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhh--hhCCcccCCcccc-ccccccCCCCCcceEEEEcCCceEE
Confidence            466678899999887666665544445555554332211  1111111111000 100    111235799999999998


Q ss_pred             EEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816          224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (500)
Q Consensus       224 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (500)
                      |.+ +.++......+|.+.+.|-.|++||. |++++.||.|++|. ++|.+-.++.....+|.|+++.|+..        
T Consensus        89 il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~--------  158 (737)
T KOG1524|consen   89 ILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSN--------  158 (737)
T ss_pred             Eec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCC--------
Confidence            876 34555556778999999999999995 89999999999997 56666556666778899999987631        


Q ss_pred             CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC
Q 010816          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (500)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg  382 (500)
                                                 ..+.+.+  +.+.+=. ........+...|.+.|.+++|+|..+++++|++|-
T Consensus       159 ---------------------------~vl~c~g--~h~~IKp-L~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~  208 (737)
T KOG1524|consen  159 ---------------------------SIVFCQG--GHISIKP-LAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDF  208 (737)
T ss_pred             ---------------------------ceEEecC--CeEEEee-cccccceeEEeccCcEEEEeecCccccceeecCCce
Confidence                                       1222222  2222221 122233445678999999999999999999999999


Q ss_pred             cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc
Q 010816          383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK  462 (500)
Q Consensus       383 ~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~  462 (500)
                      ..++||.. |+.+..-..|.-+|+++                           +|.|+ ..++.+|.. +.|        
T Consensus       209 kfKvWD~~-G~~Lf~S~~~ey~ITSv---------------------------a~npd-~~~~v~S~n-t~R--------  250 (737)
T KOG1524|consen  209 RFKIWDAQ-GANLFTSAAEEYAITSV---------------------------AFNPE-KDYLLWSYN-TAR--------  250 (737)
T ss_pred             eEEeeccc-CcccccCChhccceeee---------------------------eeccc-cceeeeeee-eee--------
Confidence            99999974 55555556688888777                           67898 666666543 222        


Q ss_pred             ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816          463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  497 (500)
Q Consensus       463 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i  497 (500)
                      + .  ....+.|+.++||+||..++.|...|.+.+
T Consensus       251 ~-~--~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  251 F-S--SPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             e-c--CCCccceEEEEEcCCCceeeccccCceEEE
Confidence            1 1  123567999999999999999998887643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.3e-16  Score=143.40  Aligned_cols=249  Identities=13%  Similarity=0.240  Sum_probs=174.3

Q ss_pred             CcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCce--eEEecCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816          107 HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTP--MFKCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (500)
Q Consensus       107 h~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~--~~~~~~h~-~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~  182 (500)
                      -.-+|.++.|.|+|. .+++++.-..+..||+.+.+.  +....++. ..+.....++++++|+.++..|.|.+-...++
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~  335 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK  335 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence            356899999999999 899999999999999987643  23334554 45677888999999999999999999988887


Q ss_pred             CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc-ccEEEEEeCCCC-eEEEEeCC
Q 010816          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-LAVTCVKWGGDG-VIYTGSQD  260 (500)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~-~l~t~~~d  260 (500)
                      +.+...  .-.+.|.++.|.     .+++.+++++.+|.|++||++...|+..+.... ..-++++.+.++ ++++|+..
T Consensus       336 eli~s~--KieG~v~~~~fs-----Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~  408 (514)
T KOG2055|consen  336 ELITSF--KIEGVVSDFTFS-----SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS  408 (514)
T ss_pred             hhhhee--eeccEEeeEEEe-----cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCc
Confidence            654321  124567777776     356788999999999999999998887664321 111333434443 67778888


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      |.|.|||..+-..                                                                   
T Consensus       409 GiVNIYd~~s~~~-------------------------------------------------------------------  421 (514)
T KOG2055|consen  409 GIVNIYDGNSCFA-------------------------------------------------------------------  421 (514)
T ss_pred             ceEEEeccchhhc-------------------------------------------------------------------
Confidence            8888887532100                                                                   


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC--CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF--DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY  418 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~--Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  418 (500)
                            .....|...+..-...|+++.|+||++.||.+|.  +..+|+-.+.+......|.....++.            
T Consensus       422 ------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg------------  483 (514)
T KOG2055|consen  422 ------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVG------------  483 (514)
T ss_pred             ------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCccc------------
Confidence                  0001122222222345899999999999987765  56788877766554444443333322            


Q ss_pred             CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                                  .++.++|||.|.+||.|..+|.|++|.+.
T Consensus       484 ------------~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  484 ------------HVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ------------ceEEEEecCCCceEEeecCCCceeeEeec
Confidence                        23445889999999999999999999763

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=4.5e-17  Score=147.31  Aligned_cols=291  Identities=21%  Similarity=0.314  Sum_probs=208.9

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEe
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSAD--GKHLVSGSKAGELQCWD  178 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~~wd  178 (500)
                      ..|.+|.+.|..|.|+..|..|++|+.|..|.+||+..+.+...+ .||...|....|-|.  ...+++++.||.+++=.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            457899999999999999999999999999999999988877665 589888888888885  35789999999999876


Q ss_pred             CC-CCCcc-cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE---EecCccc---cEEEEEeCC
Q 010816          179 PQ-TGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI---CLSGHTL---AVTCVKWGG  250 (500)
Q Consensus       179 ~~-~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~---~~~~h~~---~v~~~~~~~  250 (500)
                      +. ++... ...+..|...|.-++..|...    ..|.+++.|+.+.-.|++.+....   +...+..   ...+++..|
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp----~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSP----KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCC----CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence            53 33322 234567888888888777543    469999999999999998764322   2222322   445666665


Q ss_pred             C--CeEEEEeCCCeEEEEeCCCCee------EEEeec------CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816          251 D--GVIYTGSQDCTIKVWETTQGKL------IRELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (500)
Q Consensus       251 ~--~~l~t~~~dg~i~lwd~~~~~~------~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (500)
                      .  +.+++|+.|-.+++||.+.-..      +..+..      ...-|++++++                          
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys--------------------------  345 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS--------------------------  345 (559)
T ss_pred             CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec--------------------------
Confidence            4  3689999999999999764221      111110      01122333222                          


Q ss_pred             HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC-----------Cc-eeeecccC--cEEEEE-ECCCCCEEEEEeCC
Q 010816          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-----------PK-TRMTGHQQ--LVNHVY-FSPDGQWVASASFD  381 (500)
Q Consensus       317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~-----------~~-~~~~~h~~--~v~~l~-~sp~g~~lasgs~D  381 (500)
                                +.+..++++..|--|+++.......           .. ...+||..  .|..+- |-|...++++||.-
T Consensus       346 ----------h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC  415 (559)
T KOG1334|consen  346 ----------HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC  415 (559)
T ss_pred             ----------CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc
Confidence                      1233456667777888885322111           11 22567764  366675 57899999999999


Q ss_pred             CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       382 g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                      |.|-+|+-.+++++.-++|...-|+|+..                           +|---.||+.+-|..||||--.
T Consensus       416 GhIFiW~K~t~eii~~MegDr~VVNCLEp---------------------------HP~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  416 GHIFIWDKKTGEIIRFMEGDRHVVNCLEP---------------------------HPHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             ceEEEEecchhHHHHHhhcccceEeccCC---------------------------CCCCchhhccCCccceeeecCC
Confidence            99999999999999888887777777743                           4555689999999999999753

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1.8e-16  Score=141.34  Aligned_cols=201  Identities=22%  Similarity=0.352  Sum_probs=140.5

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccC
Q 010816          112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG  191 (500)
Q Consensus       112 ~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  191 (500)
                      .+++|+++|..|++|+.||++|||++.+-..+.....|...|.++.|+|||+.|++-+.| ..++|+.++|......-..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            689999999999999999999999988877777778899999999999999999999999 9999999988443211100


Q ss_pred             cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-----eEEE-EeCCCeEEE
Q 010816          192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-----VIYT-GSQDCTIKV  265 (500)
Q Consensus       192 ~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-----~l~t-~~~dg~i~l  265 (500)
                      .+..                                              ....+.|+.|+     ++++ ...-+.|+.
T Consensus       227 ~k~~----------------------------------------------~~~~cRF~~d~~~~~l~laa~~~~~~~v~~  260 (398)
T KOG0771|consen  227 SKDE----------------------------------------------MFSSCRFSVDNAQETLRLAASQFPGGGVRL  260 (398)
T ss_pred             ccch----------------------------------------------hhhhceecccCCCceEEEEEecCCCCceeE
Confidence            0000                                              00111222221     1111 112233444


Q ss_pred             EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (500)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd  345 (500)
                      ||+.                                                                         +|+
T Consensus       261 ~~~~-------------------------------------------------------------------------~w~  267 (398)
T KOG0771|consen  261 CDIS-------------------------------------------------------------------------LWS  267 (398)
T ss_pred             EEee-------------------------------------------------------------------------eec
Confidence            4421                                                                         121


Q ss_pred             CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE-eCCcccEEEEEeeeeeeecCCCCcee
Q 010816          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQIRFELIYCFRYPSNFYC  424 (500)
Q Consensus       346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~  424 (500)
                      -. ......+...-...|.+++.|+||+++|.|+.||.|-|++..+-+.+... +.|.+.|+.+                
T Consensus       268 ~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l----------------  330 (398)
T KOG0771|consen  268 GS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL----------------  330 (398)
T ss_pred             cc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeE----------------
Confidence            10 00000111112246899999999999999999999999999988876554 4688888777                


Q ss_pred             eeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816          425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       425 ~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                                 .|+|+.+++++.+.|.++.|..+..
T Consensus       331 -----------tF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  331 -----------TFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             -----------EEcCCcCcccccccCCceeEEEEee
Confidence                       4599999999999999999887654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.74  E-value=7.3e-16  Score=149.05  Aligned_cols=244  Identities=18%  Similarity=0.255  Sum_probs=176.0

Q ss_pred             cccEEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCce--eE----EecCCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEe
Q 010816          108 TEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTP--MF----KCTGHKNWVLCIAWSADG--KHLVSGSKAGELQCWD  178 (500)
Q Consensus       108 ~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~~~~~--~~----~~~~h~~~v~~v~~s~~~--~~l~s~~~d~~i~~wd  178 (500)
                      ...|+|+.|+|. ..+||.|..+|.|.+||+..+..  ..    ....|..++..+.|..+-  .-+++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            568999999995 56788888999999999976543  22    223688999999997653  4599999999999998


Q ss_pred             CCCCCccc-----cccc------CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEE---ECCCCe-----EEEEecCc
Q 010816          179 PQTGKPSG-----NPLS------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW---DVSLRK-----CVICLSGH  239 (500)
Q Consensus       179 ~~~~~~~~-----~~~~------~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iw---d~~~~~-----~~~~~~~h  239 (500)
                      ++.-....     ....      .-...++++.|.+..+    ..|+.|+.+|.|.-=   +.+...     ....+..|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p----~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h  397 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP----NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH  397 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCC----ceEEEEcCCcEEEEEeccCCccccccccccccccccc
Confidence            75322100     0000      1123567888877554    479999999988762   222221     12344567


Q ss_pred             cccEEEEEeCCCC--eEEEEeCCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816          240 TLAVTCVKWGGDG--VIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (500)
Q Consensus       240 ~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (500)
                      .++|.++.++|=+  .+++++ |-++++|... ....+-.+..+...+.+++++|..                       
T Consensus       398 ~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr-----------------------  453 (555)
T KOG1587|consen  398 IGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR-----------------------  453 (555)
T ss_pred             CcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcC-----------------------
Confidence            8899999988733  344555 9999999876 555666666677778999988752                       


Q ss_pred             HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC-CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010816          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (500)
Q Consensus       317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~-~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~  391 (500)
                                  +..|+++..||.+.+||+.... .+.....-+....+.+.|+++|+.|++|...|.+.+|++..
T Consensus       454 ------------pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  454 ------------PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ------------ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence                        4578999999999999986433 34444333455677888999999999999999999999854

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=6.7e-16  Score=151.89  Aligned_cols=286  Identities=15%  Similarity=0.259  Sum_probs=190.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccC--cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC
Q 010816          151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG--HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (500)
Q Consensus       151 ~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~  228 (500)
                      ++-..+.|+|-...++++...-.|++||.+.++.....-.+  ....|+.+.+-   +..++..+++|+.||.||||+--
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~li---Ne~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELI---NEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeee---cccchhheeeeccCceEEEeccc
Confidence            34567888888888999988889999999988764322111  12455555542   34566789999999999999642


Q ss_pred             -----CCeEEEEecC---cc----ccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeecC-CceEEEEEecCcce
Q 010816          229 -----LRKCVICLSG---HT----LAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYA  294 (500)
Q Consensus       229 -----~~~~~~~~~~---h~----~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~  294 (500)
                           +.+.+....+   +.    ..-.-+.|.. .|.|+++|.-..|||||...-..++.+... ..-++++....   
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~--- 1218 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL--- 1218 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc---
Confidence                 2233332221   11    1112245653 467888888899999999876665554322 22233322111   


Q ss_pred             eeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC--CceeeecccCc--EEEEEECC
Q 010816          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--PKTRMTGHQQL--VNHVYFSP  370 (500)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~--~~~~~~~h~~~--v~~l~~sp  370 (500)
                                                      ..++.+++|-.||.|++||.+....  .......|.+.  |..+.+.+
T Consensus      1219 --------------------------------~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1219 --------------------------------VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred             --------------------------------cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec
Confidence                                            1246799999999999999875443  45566788877  99999999


Q ss_pred             CCC-EEEEEeCCCcEEEEeCCCCceEE--EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE
Q 010816          371 DGQ-WVASASFDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG  447 (500)
Q Consensus       371 ~g~-~lasgs~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~  447 (500)
                      +|- .|++|+.||.|++||++......  ....|-                        +.....+.+..+++...+|+|
T Consensus      1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~------------------------~yGs~lTal~VH~hapiiAsG 1322 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW------------------------EYGSALTALTVHEHAPIIASG 1322 (1387)
T ss_pred             CCCcceeeeccCCeEEEEecccCcccccceeeecc------------------------ccCccceeeeeccCCCeeeec
Confidence            875 49999999999999998632111  111111                        000112333457788899999


Q ss_pred             ECCCcEEEEECCCcccc--cc---ccC-cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          448 SKDSTLKVWDIRTQKLK--QD---LPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       448 s~d~~v~iwd~~~~~~~--~~---~~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +. +.|+||++...++.  +.   +.+ -.+.+.++.|+|-.-.||.|..|.+|-||.
T Consensus      1323 s~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1323 SA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             Cc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence            99 99999998764331  11   111 234678999999988999999999999874

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=7.3e-17  Score=147.92  Aligned_cols=165  Identities=24%  Similarity=0.380  Sum_probs=126.0

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEE
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSAD--GKHLVSGSKAGELQCW  177 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~~w  177 (500)
                      .++|.||++.|.|++|+.+|.+||+|+.|..+.|||.-..++++.+ +||.+-|.|+.|-|.  ..+++||..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3568899999999999999999999999999999999877777654 699999999999984  5688999999999999


Q ss_pred             eCCCCCc---------ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe-EEEEe---------cC
Q 010816          178 DPQTGKP---------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICL---------SG  238 (500)
Q Consensus       178 d~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~-~~~~~---------~~  238 (500)
                      |+...+.         .......|...|..++-.|..+    ..|-+++.||+++-+|++... |....         .+
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P----htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~  198 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP----HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP  198 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCC----ceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence            9975221         1223456777777776555332    479999999999999998632 11110         11


Q ss_pred             ccccEEEEEeCCC--CeEEEEeCCCeEEEEeCC
Q 010816          239 HTLAVTCVKWGGD--GVIYTGSQDCTIKVWETT  269 (500)
Q Consensus       239 h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~~  269 (500)
                      .-....|+..+|.  .+|+.|+.|-..++||.+
T Consensus       199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             hhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            1123456666664  478999999999999964

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=4.3e-15  Score=144.10  Aligned_cols=293  Identities=22%  Similarity=0.276  Sum_probs=191.2

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC--C--ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--Q--TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~--~--~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      ..|+-.++|.++||+++++|+|..||.|.+|.--.  .  .....+.-|...|.+++|+++|.+|+||+..+.+.+|...
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            35777899999999999999999999999996322  1  1223455788999999999999999999999999999999


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC---c--------cccEEEEEeC
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---H--------TLAVTCVKWG  249 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~---h--------~~~v~~~~~~  249 (500)
                      +++  ++.++.-...|..+.++|     ++..++..-.|..|.+-.........++.|   .        ..-.+-+.++
T Consensus       282 T~~--kqfLPRLgs~I~~i~vS~-----ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id  354 (792)
T KOG1963|consen  282 TGK--KQFLPRLGSPILHIVVSP-----DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID  354 (792)
T ss_pred             CCC--cccccccCCeeEEEEEcC-----CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence            987  345667778899999886     445677777788888776543222211111   1        1223345555


Q ss_pred             C-CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816          250 G-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (500)
Q Consensus       250 ~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (500)
                      | .+.++-.+..|.|.+||+.+.+.+..+..-..     ..+                                      
T Consensus       355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~-----n~~--------------------------------------  391 (792)
T KOG1963|consen  355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE-----NYS--------------------------------------  391 (792)
T ss_pred             CCCCceeecCCCceEEEEeccccceeeeEEEEee-----ccc--------------------------------------
Confidence            5 45677788889999999877665544321000     000                                      


Q ss_pred             CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe--------CCC--cEEEEeCCCCceEEE-
Q 010816          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--------FDK--SIKLWNGTTGKFVAV-  397 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs--------~Dg--~i~lwd~~~~~~~~~-  397 (500)
                             ..|+                  .+...+++++.+-.|.+++|.-        .||  .++.|.......-.. 
T Consensus       392 -------~~~~------------------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L  446 (792)
T KOG1963|consen  392 -------DGDV------------------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFIL  446 (792)
T ss_pred             -------CCcc------------------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEE
Confidence                   0000                  1122355666666677777653        222  467776543322111 


Q ss_pred             ----EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEECCCcEEEEECCCcc----------
Q 010816          398 ----FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVWDIRTQK----------  462 (500)
Q Consensus       398 ----~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s~d~~v~iwd~~~~~----------  462 (500)
                          ..-|...+....                          ..++... .+++++.||.++||-+...+          
T Consensus       447 ~T~I~~PH~~~~vat~--------------------------~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~  500 (792)
T KOG1963|consen  447 NTKINNPHGNAFVATI--------------------------FLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT  500 (792)
T ss_pred             EEEEecCCCceeEEEE--------------------------EecCcccceeEEeccCCeEEEEEEecccccCcCccceE
Confidence                112332222111                          1233333 89999999999999874322          


Q ss_pred             ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       463 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +...-.-|+..+.+++|+.|| .+.++|.|++|.+|+
T Consensus       501 c~~i~sy~k~~i~a~~fs~dG-slla~s~~~~Itiwd  536 (792)
T KOG1963|consen  501 CKAIGSYHKTPITALCFSQDG-SLLAVSFDDTITIWD  536 (792)
T ss_pred             EeeeeccccCcccchhhcCCC-cEEEEecCCEEEEec
Confidence            222222378889999999999 567788889999997

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.72  E-value=3e-15  Score=126.96  Aligned_cols=276  Identities=18%  Similarity=0.278  Sum_probs=193.4

Q ss_pred             CEEEEEEcC--C-CCEEEEEeC----CCeEEEEeC--CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816          152 WVLCIAWSA--D-GKHLVSGSK----AGELQCWDP--QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (500)
Q Consensus       152 ~v~~v~~s~--~-~~~l~s~~~----d~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v  222 (500)
                      ++.++.|+.  + ..+||.|+.    .++|.+-.+  .+++........|..+++.+.|.|.........+++++  ..+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L  123 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL  123 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence            466777773  2 346777774    356666543  44444433345788899999999865444445565544  479


Q ss_pred             EEEECCCC--eE--EEEe-----cCccccEEEEEeCC--CCeEEEEeCCCeEEEEeCCCCe---eEEEeecCCceEEEEE
Q 010816          223 RIWDVSLR--KC--VICL-----SGHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQGK---LIRELKGHGHWVNSLA  288 (500)
Q Consensus       223 ~iwd~~~~--~~--~~~~-----~~h~~~v~~~~~~~--~~~l~t~~~dg~i~lwd~~~~~---~~~~~~~~~~~v~~~~  288 (500)
                      |+|.+...  +.  ...+     ..+..++++..|+.  ..+|.+.+-|-+..+||+.+|.   ...++..|...|..++
T Consensus       124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa  203 (364)
T KOG0290|consen  124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA  203 (364)
T ss_pred             EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence            99988632  11  1111     24567899999974  3578899999999999999873   3456788999999999


Q ss_pred             ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec--ccCcEEEE
Q 010816          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG--HQQLVNHV  366 (500)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~--h~~~v~~l  366 (500)
                      |....                                   .+.|++.+.||.+++||++..........+  .......+
T Consensus       204 f~~~s-----------------------------------~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL  248 (364)
T KOG0290|consen  204 FLKGS-----------------------------------RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL  248 (364)
T ss_pred             eccCc-----------------------------------cceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence            87531                                   357999999999999998764433222222  13467789


Q ss_pred             EECC-CCCEEEEEeCC-CcEEEEeCCC-CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC-CC
Q 010816          367 YFSP-DGQWVASASFD-KSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD-SR  442 (500)
Q Consensus       367 ~~sp-~g~~lasgs~D-g~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~  442 (500)
                      +|++ |-+++|+-..| ..|.|.|++. ...+..+++|.+.|+.+                           +|.|. ..
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgI---------------------------aWaPhS~~  301 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGI---------------------------AWAPHSSS  301 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccce---------------------------EecCCCCc
Confidence            9998 45788876665 4699999886 56688999999999888                           56665 46


Q ss_pred             EEEEEECCCcEEEEECCCccc------cccccCcccCEEEEEEcC-CCCEEEEEeCC
Q 010816          443 LLLSGSKDSTLKVWDIRTQKL------KQDLPGHADEVFAVDWSP-DGEKVASGGKD  492 (500)
Q Consensus       443 ~l~s~s~d~~v~iwd~~~~~~------~~~~~~h~~~V~~l~~s~-dg~~l~s~~~D  492 (500)
                      .|++++.|..+-+||+..--.      +-... -.++|..+.|++ .+.+|+.+...
T Consensus       302 hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  302 HICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             eeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence            899999999999999975221      11111 246899999995 46788887654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=1.5e-14  Score=136.68  Aligned_cols=275  Identities=15%  Similarity=0.204  Sum_probs=160.7

Q ss_pred             EEEeCCCcEEEEeCCC-Cc--eeEEecCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCC-CCCcccccccCcccceEE
Q 010816          124 ASGSGDTTVRLWDLNT-QT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQ-TGKPSGNPLSGHKKWITG  198 (500)
Q Consensus       124 at~~~d~~i~iwd~~~-~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~~wd~~-~~~~~~~~~~~~~~~v~~  198 (500)
                      ++...|+.|.+||+.+ ++  .+..+. +.+....++++|++++|++++ .++.|.+|++. +++...............
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            3446789999999964 32  223332 345677899999999987764 47889999986 333211000011122345


Q ss_pred             EEeeeeecCCCCceEEEEe-CCCcEEEEECCCC----eEEEEecCccccEEEEEeCCCC-eE-EEEeCCCeEEEEeCCCC
Q 010816          199 ISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLR----KCVICLSGHTLAVTCVKWGGDG-VI-YTGSQDCTIKVWETTQG  271 (500)
Q Consensus       199 ~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~-~l-~t~~~dg~i~lwd~~~~  271 (500)
                      +.++|     +++.+++++ .++.|.+|++.+.    +.+..+.+ .....++.+++++ .+ ++...++.|.+||+.+.
T Consensus        85 i~~~~-----~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         85 ISTDH-----QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             EEECC-----CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            55554     445565554 4889999998642    12222222 2334567788876 34 34556788999987642


Q ss_pred             eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC
Q 010816          272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ  351 (500)
Q Consensus       272 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~  351 (500)
                      ..+......                                                           .+          
T Consensus       159 g~l~~~~~~-----------------------------------------------------------~~----------  169 (330)
T PRK11028        159 GHLVAQEPA-----------------------------------------------------------EV----------  169 (330)
T ss_pred             CcccccCCC-----------------------------------------------------------ce----------
Confidence            211100000                                                           00          


Q ss_pred             CceeeecccCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCC--Cce--EEEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816          352 PKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTT--GKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (500)
Q Consensus       352 ~~~~~~~h~~~v~~l~~sp~g~~lasgs~-Dg~i~lwd~~~--~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  426 (500)
                        ....  ......++|+|+|++++++.. ++.|.+|++..  ++.  +..+..+                 |...    
T Consensus       170 --~~~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~-----------------p~~~----  224 (330)
T PRK11028        170 --TTVE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM-----------------PADF----  224 (330)
T ss_pred             --ecCC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC-----------------CCcC----
Confidence              0000  112456899999999988776 89999999873  322  2221111                 0000    


Q ss_pred             eccccceeeEEcCCCCEEEEEEC-CCcEEEEECCCccccccccCcc---cCEEEEEEcCCCCEEEEEeC-CCcEEEec
Q 010816          427 DMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHA---DEVFAVDWSPDGEKVASGGK-DRVLKLWM  499 (500)
Q Consensus       427 ~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~~h~---~~V~~l~~s~dg~~l~s~~~-D~~v~iW~  499 (500)
                      ........+.++|+|++|+++.. ++.|.+|++........+.+|.   .....+.|+|||++|+++.. +++|.+|.
T Consensus       225 ~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        225 SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            00011122467999999998854 7899999986533211122221   13357899999999998775 89999985

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.72  E-value=5.5e-15  Score=127.52  Aligned_cols=329  Identities=19%  Similarity=0.273  Sum_probs=198.2

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE
Q 010816          156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC  235 (500)
Q Consensus       156 v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~  235 (500)
                      .+|||+|+++|+++.- .+.+=|.++-+...  +..--+.|.-+-|..    ..+..+.....|+.|.+|++....-.-.
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q--lf~cldki~yieW~a----ds~~ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQ--LFLCLDKIVYIEWKA----DSCHILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHH--HHHHHHHhhheeeec----cceeeeeeeeccceEEEEEeecceeEEE
Confidence            5799999999999866 67777766543211  001123445566653    2344566778899999999987665555


Q ss_pred             ecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHH
Q 010816          236 LSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (500)
Q Consensus       236 ~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (500)
                      +.....++.++.|+|||  .|.+...|-.|.+|.+.+.+.. .++.....+..+++++++.+........-..+......
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            66667889999999998  4677889999999999875543 23334445677888887654433222211111111100


Q ss_pred             HHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeeccc-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816          314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ-QLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (500)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~-~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~  392 (500)
                      +.-.+.+........-.-+-.+-++..+.+||....-.   ...-|. -.+..++|+|.+++||.|+.|+.+|+.+--+.
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk---v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW  242 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK---VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW  242 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe---eeeeeeccceeEEEeccccceEEeeccchhhhhhceeee
Confidence            00001010001000001122234455678898532221   111122 35788999999999999999999999775443


Q ss_pred             ceEEEE------------------------------------eCCcccEEEEEeeee------eeecCCCCceeeeeccc
Q 010816          393 KFVAVF------------------------------------RGHVGPVYQIRFELI------YCFRYPSNFYCVVDMSC  430 (500)
Q Consensus       393 ~~~~~~------------------------------------~~h~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~  430 (500)
                      +....|                                    ..|..+.....++..      ...+.+..   ..+-.+
T Consensus       243 k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD---~pnPk~  319 (447)
T KOG4497|consen  243 KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD---FPNPKC  319 (447)
T ss_pred             eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCC---CCCccc
Confidence            322211                                    111111111111100      00011111   112246


Q ss_pred             cceeeEEcCCCCEEEEEEC--CCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          431 CMSLYSWSADSRLLLSGSK--DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       431 ~~~~~~~s~~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ++..++||+|..++++-..  -+.+-+||++..++...+. ....|.+..|+|...+|+.+....++++|.
T Consensus       320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence            6788999999999998654  3678999999888766553 356799999999999999998888999994

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=8.1e-15  Score=146.65  Aligned_cols=321  Identities=21%  Similarity=0.286  Sum_probs=199.3

Q ss_pred             EecccccccccCCcccEEEEEEcCCC-CeEEEEeCCCcEEEEeCCCC-------ceeEEecCCCCCEEEEEEcCCCCEEE
Q 010816           95 RPVNRCSATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADGKHLV  166 (500)
Q Consensus        95 ~~~~~~~~~~~gh~~~V~~~~~sp~~-~~lat~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~v~~s~~~~~l~  166 (500)
                      ++.+...+.|..|...|..++.++.. .+++|||.||+||+||...-       +...++.--...+.++.+.+.++.+|
T Consensus      1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred             CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence            34556778888999999999988765 99999999999999997531       11222323456789999999999999


Q ss_pred             EEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEE
Q 010816          167 SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV  246 (500)
Q Consensus       167 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~  246 (500)
                      .++.||.|++.++..-....                         +.++     .+++=|....-         ..|...
T Consensus      1115 v~t~DG~v~~~~id~~~~~~-------------------------~~~~-----~~ri~n~~~~g---------~vv~m~ 1155 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSK-------------------------RVAT-----QVRIPNLKKDG---------VVVSMH 1155 (1431)
T ss_pred             EEcCCCeEEEEEcccccccc-------------------------ceee-----eeecccccCCC---------ceEEee
Confidence            99999999998875321000                         0000     01111111111         112222


Q ss_pred             EeCC--C-CeEEEEeCCCeEEEEeCCCCeeEEEee--cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816          247 KWGG--D-GVIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (500)
Q Consensus       247 ~~~~--~-~~l~t~~~dg~i~lwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (500)
                      +|..  . ..++.+..-+.|..||.++......++  ...+.|+++++++.                             
T Consensus      1156 a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~----------------------------- 1206 (1431)
T KOG1240|consen 1156 AFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW----------------------------- 1206 (1431)
T ss_pred             cccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCC-----------------------------
Confidence            2221  1 146667788899999998765554443  23346778877764                             


Q ss_pred             hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC---CEEEEEe--CCCcEEEEeCCCCceEE
Q 010816          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG---QWVASAS--FDKSIKLWNGTTGKFVA  396 (500)
Q Consensus       322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g---~~lasgs--~Dg~i~lwd~~~~~~~~  396 (500)
                             +..++.|...|.+.+||++.......--.++..+++.|..+|-.   ...++++  ..+.|.+|+..+|.+-.
T Consensus      1207 -------~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1207 -------CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred             -------ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence                   34789999999999999986554433344556788888877632   3444444  46789999999997766


Q ss_pred             EEeCC-cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccc-----------
Q 010816          397 VFRGH-VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-----------  464 (500)
Q Consensus       397 ~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~-----------  464 (500)
                      ++... ..+..+-        ..|.+.... ......-...+...+.++.+|+.|..||.||....+..           
T Consensus      1280 vl~~s~~~p~ls~--------~~Ps~~~~k-p~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~ 1350 (1431)
T KOG1240|consen 1280 VLWASDGAPILSY--------ALPSNDARK-PDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSY 1350 (1431)
T ss_pred             EEEcCCCCcchhh--------hcccccCCC-CCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccc
Confidence            66544 2222111        112110000 00000011123344568999999999999996431100           


Q ss_pred             -------------------------------------cc--------ccCcccCEEEEEEcCC-CCEEEEEeCCCcEEEe
Q 010816          465 -------------------------------------QD--------LPGHADEVFAVDWSPD-GEKVASGGKDRVLKLW  498 (500)
Q Consensus       465 -------------------------------------~~--------~~~h~~~V~~l~~s~d-g~~l~s~~~D~~v~iW  498 (500)
                                                           ..        -..|.+.|+++++-.. ...|++++.||.|+||
T Consensus      1351 ~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1351 STNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred             cccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeec
Confidence                                                 00        0136667777765333 4588999999999999


Q ss_pred             c
Q 010816          499 M  499 (500)
Q Consensus       499 ~  499 (500)
                      .
T Consensus      1431 k 1431 (1431)
T KOG1240|consen 1431 K 1431 (1431)
T ss_pred             C
Confidence            5

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=1.9e-15  Score=147.19  Aligned_cols=233  Identities=22%  Similarity=0.264  Sum_probs=156.4

Q ss_pred             CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCccc-ccccCcccceEEEEeeee
Q 010816          129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSG-NPLSGHKKWITGISWEPV  204 (500)
Q Consensus       129 d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~  204 (500)
                      +..|++||..... ...+..|...+.+..|+|||+.|+.++.+   ..|.+||+.+++... ....+|   ...+.|+| 
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-  257 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-  257 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-
Confidence            5789999987655 34566788889999999999999987754   369999998875321 112333   33567776 


Q ss_pred             ecCCCCceEEEE-eCCCcEEEE--ECCCCeEEEEecCccccEEEEEeCCCCe-EE-EEeCCCeEEEEeCCCCeeEEEeec
Q 010816          205 HLNAPCRRFVSA-SKDGDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRELKG  279 (500)
Q Consensus       205 ~~~~~~~~~~s~-s~dg~v~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-t~~~dg~i~lwd~~~~~~~~~~~~  279 (500)
                          ++++++.+ +.+|.+.||  |+..+.. ..+..+...+.+..|++|+. |+ ++..++..++|++.....      
T Consensus       258 ----DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~------  326 (429)
T PRK01742        258 ----DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG------  326 (429)
T ss_pred             ----CCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC------
Confidence                45566665 467876655  6555543 34455666677889999874 44 444567777776432100      


Q ss_pred             CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc
Q 010816          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (500)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h  359 (500)
                                                                                  ..            ..+ ++
T Consensus       327 ------------------------------------------------------------~~------------~~l-~~  333 (429)
T PRK01742        327 ------------------------------------------------------------GA------------SLV-GG  333 (429)
T ss_pred             ------------------------------------------------------------Ce------------EEe-cC
Confidence                                                                        00            000 11


Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC
Q 010816          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA  439 (500)
Q Consensus       360 ~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  439 (500)
                      ..  ....|+|||++|+..+.++ +.+||+.+++.......+..                             ...+|+|
T Consensus       334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~-----------------------------~~~~~sP  381 (429)
T PRK01742        334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLD-----------------------------ESPSISP  381 (429)
T ss_pred             CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCC-----------------------------CCceECC
Confidence            11  2357899999998887765 55699988765422111100                             1126899


Q ss_pred             CCCEEEEEECCCcEEEEEC--CCccccccccCcccCEEEEEEcCC
Q 010816          440 DSRLLLSGSKDSTLKVWDI--RTQKLKQDLPGHADEVFAVDWSPD  482 (500)
Q Consensus       440 ~~~~l~s~s~d~~v~iwd~--~~~~~~~~~~~h~~~V~~l~~s~d  482 (500)
                      +|++|+.++.++.+++|++  ..++..+.+.+|.+.+..++|||-
T Consensus       382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            9999999999999988875  357777888888888999999984

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.68  E-value=5.5e-15  Score=135.37  Aligned_cols=260  Identities=19%  Similarity=0.345  Sum_probs=176.6

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce-eEEecCCCCCEEEEEE--------cCCCCEEEEEeCCCeEEE
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-MFKCTGHKNWVLCIAW--------SADGKHLVSGSKAGELQC  176 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~--------s~~~~~l~s~~~d~~i~~  176 (500)
                      -|+..|-|+.|+.+...+.+++.+..++-||+.+... +..+  ....|....+        -...+.++.++.||.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhC--CcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence            4677778999998888777777666666666643211 1111  1111111000        012357888899999998


Q ss_pred             EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--eE
Q 010816          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VI  254 (500)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l  254 (500)
                      -+- .++. .....+|.+.+.+-.|+|     ++.-+++++.||.|++|.- +|-...++.....+|.|++|.|+.  .+
T Consensus        90 l~k-~~rV-E~sv~AH~~A~~~gRW~~-----dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen   90 LNK-SARV-ERSISAHAAAISSGRWSP-----DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIV  161 (737)
T ss_pred             ecc-cchh-hhhhhhhhhhhhhcccCC-----CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceE
Confidence            864 3332 345788999999999987     4457999999999999973 343333344556789999999875  34


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (500)
Q Consensus       255 ~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (500)
                      ++.+  +.+.+=-+.....+-..+.|..-|.++.+++.                                    .+.+++
T Consensus       162 ~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~------------------------------------s~lI~s  203 (737)
T KOG1524|consen  162 FCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ------------------------------------SNIIAS  203 (737)
T ss_pred             EecC--CeEEEeecccccceeEEeccCcEEEEeecCcc------------------------------------ccceee
Confidence            4433  45555455544445556789999999988764                                    357899


Q ss_pred             eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeee
Q 010816          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY  414 (500)
Q Consensus       335 ~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~  414 (500)
                      |+.|...++||..  ..+......|..+|++++|+|+ ..++.+|.. ++|+=..           ..+.|..+      
T Consensus       204 gGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p-----------~~GSifnl------  262 (737)
T KOG1524|consen  204 GGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSP-----------RVGSIFNL------  262 (737)
T ss_pred             cCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeeeeee-eeeecCC-----------CccceEEE------
Confidence            9999999999954  2344455678899999999999 777777664 3442222           22334443      


Q ss_pred             eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEE
Q 010816          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (500)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~i  455 (500)
                                           +||+||.+++.|...|.+.+
T Consensus       263 ---------------------sWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  263 ---------------------SWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ---------------------EEcCCCceeeccccCceEEE
Confidence                                 79999999999999887654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=6.1e-14  Score=136.25  Aligned_cols=318  Identities=17%  Similarity=0.214  Sum_probs=206.3

Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCCccccccc
Q 010816          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG---KHLVSGSKAGELQCWDPQTGKPSGNPLS  190 (500)
Q Consensus       114 ~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~  190 (500)
                      -.|++|+++++... +..|+||...++.++..+.+|..++..+.+.|..   .++.+++.||.|++||...+...+....
T Consensus        22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~  100 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN  100 (792)
T ss_pred             cccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence            35899999887765 4589999999999999999999999999998864   4677999999999999988865442211


Q ss_pred             CcccceEEEEeeeeecCCC---------CceEEEEeCC--CcEEEEECCCC--eEEEEecCccccEEEEEeCCCCeEEEE
Q 010816          191 GHKKWITGISWEPVHLNAP---------CRRFVSASKD--GDARIWDVSLR--KCVICLSGHTLAVTCVKWGGDGVIYTG  257 (500)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~---------~~~~~s~s~d--g~v~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~l~t~  257 (500)
                        ...+..+.+.|.....+         ...+.+.+.+  ++++=+.+.+.  .....+.+|.. -.++.+++.+.+...
T Consensus       101 --~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i  177 (792)
T KOG1963|consen  101 --NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGI  177 (792)
T ss_pred             --CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEE
Confidence              12222332222111100         0011111111  11111111110  00001112222 235666777777777


Q ss_pred             eCCCeEEEEeCCCCeeEEE----eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816          258 SQDCTIKVWETTQGKLIRE----LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (500)
                      ..+..+.+|+.........    -..|.-.+++.+++|.                                    +..++
T Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn------------------------------------~~~~A  221 (792)
T KOG1963|consen  178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN------------------------------------ERYLA  221 (792)
T ss_pred             EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccc------------------------------------cceEE
Confidence            7778888888776441110    1123333556666553                                    45788


Q ss_pred             EeeCCCeEEEEcCCC---CCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEe
Q 010816          334 SGSDDFTMFLWEPAV---SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (500)
Q Consensus       334 s~s~d~~v~~wd~~~---~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~  410 (500)
                      +|..||.|.+|.-..   .......+.=|.+.|++++|+++|.+|.+|+..+.+-+|.+.+++. .-+.--.++|..   
T Consensus       222 a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPRLgs~I~~---  297 (792)
T KOG1963|consen  222 AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLPRLGSPILH---  297 (792)
T ss_pred             EeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-ccccccCCeeEE---
Confidence            999999999997433   1223345667889999999999999999999999999999998762 112212233333   


Q ss_pred             eeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCc-----------ccCEEEEEE
Q 010816          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH-----------ADEVFAVDW  479 (500)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h-----------~~~V~~l~~  479 (500)
                                              +.+|||+.+.+....|+.|++-...+.+....+.|-           .+-.+.+++
T Consensus       298 ------------------------i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i  353 (792)
T KOG1963|consen  298 ------------------------IVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI  353 (792)
T ss_pred             ------------------------EEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence                                    367999999999999999999988665544433332           223567889


Q ss_pred             cCCCCEEEEEeCCCcEEEec
Q 010816          480 SPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       480 s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +|.-+.++-.+.-+.|.+|+
T Consensus       354 dpr~~~~vln~~~g~vQ~yd  373 (792)
T KOG1963|consen  354 DPRTNSLVLNGHPGHVQFYD  373 (792)
T ss_pred             cCCCCceeecCCCceEEEEe
Confidence            99777888899999998876

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.68  E-value=6.6e-17  Score=155.05  Aligned_cols=235  Identities=26%  Similarity=0.439  Sum_probs=183.3

Q ss_pred             cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEE
Q 010816          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVW  266 (500)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lw  266 (500)
                      .+.+|...|.++.|..     .|+++++|+.|..++||...+..|+....||.+.|+.++.+.++. +++++.|..|++|
T Consensus       185 rLlgH~naVyca~fDr-----tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDR-----TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHhhhhheeeeeecc-----ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence            3568888888888754     568999999999999999999999999999999999999987764 7789999999999


Q ss_pred             eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (500)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~  346 (500)
                      .++++..+..+.+|...|++++++|.                                        .+.+.||++++||.
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP~----------------------------------------~sss~dgt~~~wd~  299 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSPR----------------------------------------ASSSDDGTCRIWDA  299 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCcc----------------------------------------ccCCCCCceEeccc
Confidence            99999999999999999999999873                                        36788999999997


Q ss_pred             CCCCC---CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816          347 AVSKQ---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY  423 (500)
Q Consensus       347 ~~~~~---~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  423 (500)
                      +....   +.-......+.+.++-|..++.-++||+.|+.-+.|...-..+      +...+   -|             
T Consensus       300 r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~l---if-------------  357 (1113)
T KOG0644|consen  300 RLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLL---IF-------------  357 (1113)
T ss_pred             cccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh------hccce---EE-------------
Confidence            62211   0000111235577888888999999999999988886543211      11100   00             


Q ss_pred             eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEE-EEeCCCcEEEec
Q 010816          424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA-SGGKDRVLKLWM  499 (500)
Q Consensus       424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~-s~~~D~~v~iW~  499 (500)
                           .+..     +....+.+++-.+-.+.+|++.++.+...+.+|.+.++.+.++|-+..++ +++.||..-||+
T Consensus       358 -----~t~s-----sd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd  424 (1113)
T KOG0644|consen  358 -----VTRS-----SDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD  424 (1113)
T ss_pred             -----Eecc-----ccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence                 0000     11124556677777889999999999999999999999999999877665 899999999997

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.67  E-value=5.1e-15  Score=135.72  Aligned_cols=192  Identities=18%  Similarity=0.384  Sum_probs=131.8

Q ss_pred             ceEEEEeCCCcEEEEECCCCeEEEEec----CccccEEEEEeCC--CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceE
Q 010816          211 RRFVSASKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWV  284 (500)
Q Consensus       211 ~~~~s~s~dg~v~iwd~~~~~~~~~~~----~h~~~v~~~~~~~--~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v  284 (500)
                      --++.|-.-|.|.+.|.......+.+.    -....|+|+.|.+  ++.++.+-.+|.+.+||..-.   .   .    .
T Consensus       186 ~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~---~---~----~  255 (636)
T KOG2394|consen  186 LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV---C---G----A  255 (636)
T ss_pred             cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc---c---c----C
Confidence            346667777888888865532211111    1246799999975  457888889999999986210   0   0    0


Q ss_pred             EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEE
Q 010816          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN  364 (500)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~  364 (500)
                          -.|.+.           ..                   ..++.+       .|..|.-.....+.....--+..|+
T Consensus       256 ----t~p~~~-----------~~-------------------k~~~~f-------~i~t~ksk~~rNPv~~w~~~~g~in  294 (636)
T KOG2394|consen  256 ----TAPSYQ-----------AL-------------------KDGDQF-------AILTSKSKKTRNPVARWHIGEGSIN  294 (636)
T ss_pred             ----CCCccc-----------cc-------------------CCCCee-------EEeeeeccccCCccceeEecccccc
Confidence                000000           00                   001111       2222322222244444444456899


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEE
Q 010816          365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL  444 (500)
Q Consensus       365 ~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  444 (500)
                      ..+|+|||++||+.|.||.+||||..+-+++.+++.--+...++                           .|||||+++
T Consensus       295 ~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCv---------------------------cWSPDGKyI  347 (636)
T KOG2394|consen  295 EFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCV---------------------------CWSPDGKYI  347 (636)
T ss_pred             ceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEE---------------------------EEcCCccEE
Confidence            99999999999999999999999998877776655444444444                           799999999


Q ss_pred             EEEECCCcEEEEECCCccccccccCcccCEEEEEEc
Q 010816          445 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS  480 (500)
Q Consensus       445 ~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s  480 (500)
                      ++|+.|-.|.||.+..++++..-.||+..|..|+|.
T Consensus       348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            999999999999999999999999999999999998

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.3e-15  Score=139.77  Aligned_cols=125  Identities=29%  Similarity=0.460  Sum_probs=105.1

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (500)
Q Consensus       144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~  223 (500)
                      ..+.||++.|.|+.|+.||.+|+|||.|-.+.|||+-..+.....-.+|.+.|.++.|.|...   .+.+++|+.|..|+
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn---nriv~sgAgDk~i~  120 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN---NRIVLSGAGDKLIK  120 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC---CeEEEeccCcceEE
Confidence            357799999999999999999999999999999999877766666789999999999998643   46899999999999


Q ss_pred             EEECCCC----------eEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCC
Q 010816          224 IWDVSLR----------KCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG  271 (500)
Q Consensus       224 iwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~  271 (500)
                      ++|+...          .......-|...|-.++-.+++  .+.+++.||+|+-+|++..
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            9999742          2334455677777777777655  7999999999999999864

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=1e-13  Score=121.72  Aligned_cols=224  Identities=15%  Similarity=0.225  Sum_probs=154.1

Q ss_pred             CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC--CCeEEEEeCCCCeeEEEeecCCceE
Q 010816          207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ--DCTIKVWETTQGKLIRELKGHGHWV  284 (500)
Q Consensus       207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~--dg~i~lwd~~~~~~~~~~~~~~~~v  284 (500)
                      ++++..+..|+.|| -+++.................|--.-|+.. .++..+.  -+.+++.+...+..+..+.. ...|
T Consensus        14 Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-pt~I   90 (391)
T KOG2110|consen   14 NQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTTICEIFF-PTSI   90 (391)
T ss_pred             ccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCceEEEEec-CCce
Confidence            34445566677776 467766543221111112233444556654 4333333  34588888887776665542 2345


Q ss_pred             EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee--eecccCc
Q 010816          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQL  362 (500)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~--~~~h~~~  362 (500)
                      .++.+.                                      ..+++..-.+. |+++|+...+.....  ...+...
T Consensus        91 L~VrmN--------------------------------------r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~g  131 (391)
T KOG2110|consen   91 LAVRMN--------------------------------------RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKG  131 (391)
T ss_pred             EEEEEc--------------------------------------cceEEEEEccc-EEEEecccceeehhhhccCCCccc
Confidence            555443                                      23566555544 999998765433222  2245566


Q ss_pred             EEEEEECCCCCEEEEEe--CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816          363 VNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (500)
Q Consensus       363 v~~l~~sp~g~~lasgs--~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  440 (500)
                      +.++++++.+.+||-=+  .-|.|.+||..+.+.+..+.+|.+++.++                           +|+++
T Consensus       132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAal---------------------------afs~~  184 (391)
T KOG2110|consen  132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAAL---------------------------AFSPD  184 (391)
T ss_pred             eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEE---------------------------EECCC
Confidence            77777777778888532  35899999999999999999999999887                           56999


Q ss_pred             CCEEEEEECCCc-EEEEECCCccccccccCcc--cCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          441 SRLLLSGSKDST-LKVWDIRTQKLKQDLPGHA--DEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       441 ~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~h~--~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |.+||+||..|+ ||||.+..++.+..++-..  ..|++++|+||+++|++.|..++|+|+.
T Consensus       185 G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK  246 (391)
T KOG2110|consen  185 GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK  246 (391)
T ss_pred             CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence            999999999986 6999999998887765432  3689999999999999999999999985

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.63  E-value=3.2e-14  Score=122.53  Aligned_cols=232  Identities=19%  Similarity=0.296  Sum_probs=163.2

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc---eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-C
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG-K  183 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~-~  183 (500)
                      .++|+|.+|++|+..+|.+-....|.||......   +.+.++.|...|+.|+|+|.++.|++|+.|..-.+|....+ +
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            4689999999999999999999999999887654   56788899999999999999999999999999999988433 3


Q ss_pred             ccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEE----EEecCccccEEEEEeCCCCe-EEEE
Q 010816          184 PSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV----ICLSGHTLAVTCVKWGGDGV-IYTG  257 (500)
Q Consensus       184 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~-l~t~  257 (500)
                      -.. ..+..++...+++.|.|..     .+|++||..+.|.||-.+...--    ..-+.+...|++++|.+++. +++|
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~e-----nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKE-----NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             eccceeEEEeccceeeEeecCcC-----ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            211 1245678889999999854     58999999999999987644321    11234567899999999985 6678


Q ss_pred             eCCCeEEEEeCC------------------CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816          258 SQDCTIKVWETT------------------QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (500)
Q Consensus       258 ~~dg~i~lwd~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (500)
                      +.|+..|+|..-                  -|.++.++.....++..+.+++                            
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~----------------------------  216 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP----------------------------  216 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC----------------------------
Confidence            899999999631                  0111112222333444444433                            


Q ss_pred             hhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC
Q 010816          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD  381 (500)
Q Consensus       320 ~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D  381 (500)
                              .++.++--+.|.++.+=|.....+.......-+-+..++.|-.+. .++.+++|
T Consensus       217 --------sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~  269 (361)
T KOG1523|consen  217 --------SGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYD  269 (361)
T ss_pred             --------CCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCCC
Confidence                    256788888899998888655432222222222455566664433 34555555

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.9e-13  Score=113.31  Aligned_cols=237  Identities=19%  Similarity=0.290  Sum_probs=148.4

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQT---------GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (500)
Q Consensus       152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v  222 (500)
                      .|.+-+|+|.+++|+.|..+|.|.+..+++         |+..-.+..+|..++..+.|..       +.+++| .||.|
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-------~~Lls~-gdG~V   83 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-------DFLLSG-GDGLV   83 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-------hheeec-cCceE
Confidence            355668899999999999999999998653         2222234578999999998863       234444 55999


Q ss_pred             EEEECCCCeE------EEE--ecCcc-----ccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEE
Q 010816          223 RIWDVSLRKC------VIC--LSGHT-----LAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA  288 (500)
Q Consensus       223 ~iwd~~~~~~------~~~--~~~h~-----~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~  288 (500)
                      +=|..+....      +..  ...|.     ..|.++...| ++.+++++.|+.++-||+++|+..+++++|...+.++.
T Consensus        84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv  163 (325)
T KOG0649|consen   84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV  163 (325)
T ss_pred             EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence            9887643211      000  01121     2355665553 45667777888888888888888777777766555543


Q ss_pred             ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEE
Q 010816          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF  368 (500)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~  368 (500)
                                                                                                     -
T Consensus       164 -------------------------------------------------------------------------------~  164 (325)
T KOG0649|consen  164 -------------------------------------------------------------------------------G  164 (325)
T ss_pred             -------------------------------------------------------------------------------e
Confidence                                                                                           2


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE
Q 010816          369 SPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS  448 (500)
Q Consensus       369 sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s  448 (500)
                      -.....+.+|++||++|+||.++++++.++..-..+- .+        +...        ...+.  +...+..+|++|+
T Consensus       165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~-~l--------Rp~~--------g~wig--ala~~edWlvCGg  225 (325)
T KOG0649|consen  165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN-LL--------RPDW--------GKWIG--ALAVNEDWLVCGG  225 (325)
T ss_pred             cccCcceeecCCCccEEEEeccccceeEEeccccChh-hc--------Cccc--------CceeE--EEeccCceEEecC
Confidence            1122346788888888888888888777654322110 00        0000        01111  1234667888776


Q ss_pred             CCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       449 ~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      . ...-+|++++-+....++ ...+|-.+.|-.  +.++++|.-+-|.-|
T Consensus       226 G-p~lslwhLrsse~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~  271 (325)
T KOG0649|consen  226 G-PKLSLWHLRSSESTCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSY  271 (325)
T ss_pred             C-CceeEEeccCCCceEEEe-cccceeEeeeec--ceEEEeccccceeee
Confidence            4 458899999888766654 234577788864  356677765555555

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=8.5e-13  Score=116.07  Aligned_cols=237  Identities=18%  Similarity=0.257  Sum_probs=155.1

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCCcc
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--GELQCWDPQTGKPS  185 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d--~~i~~wd~~~~~~~  185 (500)
                      ...+..+.|+.+...|..|+.|| .+++..+............-.|..+-|+.  .++|..+.+  ..+++.+.+.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence            34567777999999999999887 67887765444332222334566677765  456555544  45888888766544


Q ss_pred             cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC---ccccEEEEEeCCCC-eEEE-EeCC
Q 010816          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---HTLAVTCVKWGGDG-VIYT-GSQD  260 (500)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~-~l~t-~~~d  260 (500)
                      .....  ...|.++.++.       ++++.+=.+. |.|||++..+.+.++..   +...+.++..+.++ +++- ++. 
T Consensus        82 Ce~~f--pt~IL~VrmNr-------~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-  150 (391)
T KOG2110|consen   82 CEIFF--PTSILAVRMNR-------KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-  150 (391)
T ss_pred             EEEec--CCceEEEEEcc-------ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC-
Confidence            32221  23455555432       4677665554 99999999887765532   33334444444332 2221 111 


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                                                                                                  ..|.
T Consensus       151 ----------------------------------------------------------------------------t~Gd  154 (391)
T KOG2110|consen  151 ----------------------------------------------------------------------------TSGD  154 (391)
T ss_pred             ----------------------------------------------------------------------------CCce
Confidence                                                                                        1344


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCc-EEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCC
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS-IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP  419 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~-i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  419 (500)
                      |.+||... -.+...+..|.+.+.+++|+++|.+|||+|.-|+ |||+.+.+|+.+..|+--..++              
T Consensus       155 V~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~--------------  219 (391)
T KOG2110|consen  155 VVLFDTIN-LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPV--------------  219 (391)
T ss_pred             EEEEEccc-ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceee--------------
Confidence            55555432 2334556689999999999999999999999886 7999999999887775321111              


Q ss_pred             CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816          420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                                 .+..++|+|++++|++.|..++|++|.++.
T Consensus       220 -----------~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  220 -----------SIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             -----------EEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence                       123347899999999999999999998864

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.61  E-value=1.8e-13  Score=118.03  Aligned_cols=250  Identities=22%  Similarity=0.331  Sum_probs=168.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC--cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEE
Q 010816          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD  226 (500)
Q Consensus       149 h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd  226 (500)
                      -..+|+|.+|++|...+|.+.....|.||......  .....+..|...|+++.|.|..     .++++|+.|+.-++|.
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-----nrIvtcs~drnayVw~   83 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-----NRIVTCSHDRNAYVWT   83 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-----CceeEccCCCCccccc
Confidence            35689999999999999999999999999877655  2345678899999999999854     4899999999999999


Q ss_pred             CCCC---eEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816          227 VSLR---KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (500)
Q Consensus       227 ~~~~---~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (500)
                      ...+   +....+..++...+++.|+|.+ .+++|+....|.||-++...         .|                   
T Consensus        84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN---------dW-------------------  135 (361)
T KOG1523|consen   84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN---------DW-------------------  135 (361)
T ss_pred             cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc---------ce-------------------
Confidence            8433   3455667788999999999865 68888888888887543210         00                   


Q ss_pred             CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC
Q 010816          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (500)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg  382 (500)
                                                               |=   .   +..-..+...|++++|+|++-+||.||.|+
T Consensus       136 -----------------------------------------WV---s---KhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen  136 -----------------------------------------WV---S---KHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             -----------------------------------------eh---h---hhhCCccccceeeeeccCCcceecccccCc
Confidence                                                     00   0   011123456799999999999999999999


Q ss_pred             cEEEEeCCCCceEEEEeC---CcccEEEEEeeeeeeecCCCCceeee-eccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          383 SIKLWNGTTGKFVAVFRG---HVGPVYQIRFELIYCFRYPSNFYCVV-DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       383 ~i~lwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                      ..|++..-    ++....   ....-..+.|..+         .... .....+..+.|+|+|..|+-.+.|..|.+=|.
T Consensus       169 k~rVfSay----IK~Vdekpap~pWgsk~PFG~l---------m~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  169 KCRVFSAY----IKGVDEKPAPTPWGSKMPFGQL---------MSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA  235 (361)
T ss_pred             ceeEEEEe----eeccccCCCCCCCccCCcHHHH---------HHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence            99999632    110000   0000001111000         0000 11223444578999999999999999999987


Q ss_pred             CCcc-ccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          459 RTQK-LKQDLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       459 ~~~~-~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      .... ....+..-.-+..++.|-.+ +.++.+|.|
T Consensus       236 ~~p~~~v~~~~~~~lP~ls~~~ise-~~vv~ag~~  269 (361)
T KOG1523|consen  236 AGPSERVQSVATAQLPLLSVSWISE-NSVVAAGYD  269 (361)
T ss_pred             CCCchhccchhhccCCceeeEeecC-CceeecCCC
Confidence            7654 22222222245567777554 344555555

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=2e-13  Score=122.09  Aligned_cols=196  Identities=22%  Similarity=0.255  Sum_probs=138.3

Q ss_pred             EEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816          244 TCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (500)
Q Consensus       244 ~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (500)
                      .+++|+.+| .+++|+.||++|+|+.++-..+.....|...|.++.++++.                             
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-----------------------------  198 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-----------------------------  198 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-----------------------------
Confidence            568888884 68899999999999988777777777788899999999873                             


Q ss_pred             hhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee-ecccCcEEEEEECCCC-----CEEEEEeCCCcEEEEeCCCCceEE
Q 010816          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDG-----QWVASASFDKSIKLWNGTTGKFVA  396 (500)
Q Consensus       323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~g-----~~lasgs~Dg~i~lwd~~~~~~~~  396 (500)
                             ..+++-+.| ..++|+..........- .+.......+.|+.|+     ..++.-..-+.|+.||+....--.
T Consensus       199 -------k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~  270 (398)
T KOG0771|consen  199 -------KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN  270 (398)
T ss_pred             -------cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence                   467888888 89999987653222111 2233445667888776     333444445677777754321100


Q ss_pred             EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc-ccCcccCEE
Q 010816          397 VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVF  475 (500)
Q Consensus       397 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~h~~~V~  475 (500)
                      .++..                      ........++.++.|++|+++|.|+.||.|-|++..+.+..+. -..|..-|+
T Consensus       271 ~l~~~----------------------~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT  328 (398)
T KOG0771|consen  271 FLRLR----------------------KKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVT  328 (398)
T ss_pred             ccchh----------------------hhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeee
Confidence            00000                      0001112344557799999999999999999999988766543 346989999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEe
Q 010816          476 AVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       476 ~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      .|.|+||.+++++.+.|.+.++-
T Consensus       329 ~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  329 GLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             eEEEcCCcCcccccccCCceeEE
Confidence            99999999999999999887764

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=5.3e-12  Score=109.01  Aligned_cols=236  Identities=19%  Similarity=0.297  Sum_probs=153.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc--ccccCcccceEEEEeeeeecCCCCceEE-EEeCC------CcE
Q 010816          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFV-SASKD------GDA  222 (500)
Q Consensus       152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~-s~s~d------g~v  222 (500)
                      ...+++|+.|..-++.|..+| .++|+.+--+...  +...+. -.+..+-|       .++.++ .||.+      ..|
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G-~~~veMLf-------R~N~laLVGGg~~pky~pNkv   77 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGG-FKIVEMLF-------RSNYLALVGGGSRPKYPPNKV   77 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCc-hhhhhHhh-------hhceEEEecCCCCCCCCCceE
Confidence            345699999988887776554 7888875322110  001110 11111111       122332 34333      479


Q ss_pred             EEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (500)
Q Consensus       223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (500)
                      .|||-...+++.++. -..+|.++.+..+..++  -..+.|.||... +.+.++.+.....+---++..+..        
T Consensus        78 iIWDD~k~~~i~el~-f~~~I~~V~l~r~riVv--vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~--------  146 (346)
T KOG2111|consen   78 IIWDDLKERCIIELS-FNSEIKAVKLRRDRIVV--VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS--------  146 (346)
T ss_pred             EEEecccCcEEEEEE-eccceeeEEEcCCeEEE--EecCeEEEEEcCCChhheeeeecccCCCceEeecCCC--------
Confidence            999977777777653 46789999988775433  346789999887 445555443221111111111110        


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-EeeCCCeEEEEcCCCCCC-CceeeecccCcEEEEEECCCCCEEEEEe
Q 010816          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (500)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~d~~v~~wd~~~~~~-~~~~~~~h~~~v~~l~~sp~g~~lasgs  379 (500)
                                                ....++ -|-.-|.|.+-|+..... +.....+|...|.|++.+-+|.++||+|
T Consensus       147 --------------------------~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS  200 (346)
T KOG2111|consen  147 --------------------------NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS  200 (346)
T ss_pred             --------------------------CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec
Confidence                                      011222 244568899988765443 4567889999999999999999999999


Q ss_pred             CCCc-EEEEeCCCCceEEEEeC--CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEE
Q 010816          380 FDKS-IKLWNGTTGKFVAVFRG--HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW  456 (500)
Q Consensus       380 ~Dg~-i~lwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iw  456 (500)
                      ..|+ |||||..+|+.+..++-  ....++++                           +|||+..+||++|.-|+++||
T Consensus       201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i---------------------------aFSp~~s~LavsSdKgTlHiF  253 (346)
T KOG2111|consen  201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCI---------------------------AFSPNSSWLAVSSDKGTLHIF  253 (346)
T ss_pred             cCcEEEEEEEcCCCcEeeeeecCCchheEEEE---------------------------EeCCCccEEEEEcCCCeEEEE
Confidence            9986 79999999999887753  23456666                           679999999999999999999


Q ss_pred             ECCC
Q 010816          457 DIRT  460 (500)
Q Consensus       457 d~~~  460 (500)
                      .++.
T Consensus       254 ~l~~  257 (346)
T KOG2111|consen  254 SLRD  257 (346)
T ss_pred             Eeec
Confidence            9875

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.2e-13  Score=134.58  Aligned_cols=208  Identities=18%  Similarity=0.187  Sum_probs=134.9

Q ss_pred             CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCC---CeEEEEeCCCCee--EEEeecCCceEEEEEecCc
Q 010816          219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD---CTIKVWETTQGKL--IRELKGHGHWVNSLALSTE  292 (500)
Q Consensus       219 dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~d---g~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~  292 (500)
                      +..|++||..... ...+..|...+.+..|+|||. |+.++.+   ..|++||+.+++.  +..+.++   ...++++|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            4689999986544 445667778899999999984 5555443   4699999988753  2222222   224555554


Q ss_pred             ceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe-eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC
Q 010816          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG-SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD  371 (500)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~  371 (500)
                                                          +..++.+ +.++.+.||...........+..+...+....|+||
T Consensus       259 ------------------------------------G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpD  302 (429)
T PRK01742        259 ------------------------------------GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPD  302 (429)
T ss_pred             ------------------------------------CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCC
Confidence                                                3345554 467766655432222234456667777889999999


Q ss_pred             CCEEEEEe-CCCcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816          372 GQWVASAS-FDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (500)
Q Consensus       372 g~~lasgs-~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~  449 (500)
                      |+.|+..+ .+|..+||++... .....+ ++.+  +                           ..+|+|+|++|+.++.
T Consensus       303 G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~---------------------------~~~~SpDG~~ia~~~~  352 (429)
T PRK01742        303 GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--Y---------------------------SAQISADGKTLVMING  352 (429)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--C---------------------------CccCCCCCCEEEEEcC
Confidence            99877655 5788888876432 111111 1111  1                           1257999999998887


Q ss_pred             CCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          450 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       450 d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ++ +.+||+.+++.......+  ....++|+|||+.|+.++.++.+++|.
T Consensus       353 ~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        353 DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEE
Confidence            66 555999887654322222  235678999999999999999888774

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=5.3e-13  Score=118.12  Aligned_cols=262  Identities=16%  Similarity=0.268  Sum_probs=172.2

Q ss_pred             CCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCCcccc-----cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816          151 NWVLCIAWSADG--KHLVSGSKAGELQCWDPQTGKPSGN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (500)
Q Consensus       151 ~~v~~v~~s~~~--~~l~s~~~d~~i~~wd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~  223 (500)
                      ..|..+.|.-++  ..|..++.|-.+.............     ......+.|.++.       .....+++|-.+|.+.
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~-------~~dg~Litc~~sG~l~  128 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLK-------LADGTLITCVSSGNLQ  128 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchh-------hcCCEEEEEecCCcEE
Confidence            345666665443  3444444555555555443332211     1112223333332       2235789999999999


Q ss_pred             EEECCCCe----EEEEecCccccEEEEEeCC--CCeEEEEeCC--CeEEEEeCCCCeeEEEeecCC---------ceEEE
Q 010816          224 IWDVSLRK----CVICLSGHTLAVTCVKWGG--DGVIYTGSQD--CTIKVWETTQGKLIRELKGHG---------HWVNS  286 (500)
Q Consensus       224 iwd~~~~~----~~~~~~~h~~~v~~~~~~~--~~~l~t~~~d--g~i~lwd~~~~~~~~~~~~~~---------~~v~~  286 (500)
                      +|....+.    .+..+.-+ ..+..+.-.+  .+++++|+..  ..+++||+.+.+.+.+.+.-.         -|+..
T Consensus       129 ~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td  207 (412)
T KOG3881|consen  129 VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD  207 (412)
T ss_pred             EEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence            99987432    11112111 2233332222  2467779988  899999999875554433211         12222


Q ss_pred             EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEE
Q 010816          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV  366 (500)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l  366 (500)
                      +.|-                                  .+.+...|+++..-+.+++||.+....|...+.-....++++
T Consensus       208 i~Fl----------------------------------~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~  253 (412)
T KOG3881|consen  208 IRFL----------------------------------EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST  253 (412)
T ss_pred             ceec----------------------------------CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence            2221                                  222356799999999999999998888888887778899999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE
Q 010816          367 YFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL  445 (500)
Q Consensus       367 ~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  445 (500)
                      ...|+|+++.+|..-|.+..||.+.++.... +++-.+.+.++..                           +|...+||
T Consensus       254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~---------------------------hp~~~~la  306 (412)
T KOG3881|consen  254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC---------------------------HPTHPVLA  306 (412)
T ss_pred             eecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEE---------------------------cCCCceEE
Confidence            9999999999999999999999999998876 8888888887743                           78889999


Q ss_pred             EEECCCcEEEEECCCccccccccCcccCEEEEEEcCC
Q 010816          446 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD  482 (500)
Q Consensus       446 s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d  482 (500)
                      +++.|..|||+|+++.+++... --....+.+-+.++
T Consensus       307 s~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~~~  342 (412)
T KOG3881|consen  307 SCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLRDD  342 (412)
T ss_pred             eeccceeEEEeecccchhhhhh-hhhccccEEEecCC
Confidence            9999999999999996654321 11234555555443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.58  E-value=7e-15  Score=132.51  Aligned_cols=267  Identities=17%  Similarity=0.294  Sum_probs=181.5

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (500)
Q Consensus       150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~  229 (500)
                      .-.-..+.|+.+|.+|+.|+.-|.|..+|+.+++.....  .-...|..+.|...      ..|++.....-+.||| ..
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHn------eq~~AVAQK~y~yvYD-~~  199 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHN------EQFFAVAQKKYVYVYD-NN  199 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcc------hHHHHhhhhceEEEec-CC
Confidence            444577899999999999999999999999988754321  12334556666432      2456666778899998 45


Q ss_pred             CeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCC
Q 010816          230 RKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (500)
Q Consensus       230 ~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (500)
                      |..+.+++.| ..|..+.|-|..+ |++++..|.++.-|+.+|+.+..+......+..+...|-                
T Consensus       200 GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~----------------  262 (545)
T KOG1272|consen  200 GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY----------------  262 (545)
T ss_pred             CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc----------------
Confidence            6666666554 4677888888764 667888899999999999988776544444433333221                


Q ss_pred             CHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (500)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd  388 (500)
                                          ...+-.|...|+|.+|.+.. ..+...+..|...|.++++.++|+++||.+.|+.++|||
T Consensus       263 --------------------NaVih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD  321 (545)
T KOG1272|consen  263 --------------------NAVIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD  321 (545)
T ss_pred             --------------------cceEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence                                23466788999999999764 455667789999999999999999999999999999999


Q ss_pred             CCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC-Cc--cccc
Q 010816          389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR-TQ--KLKQ  465 (500)
Q Consensus       389 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~-~~--~~~~  465 (500)
                      ++.-..+.++.. ..+...                           +++|.  +-+++.|....|.||.-. .+  ....
T Consensus       322 lR~~~ql~t~~t-p~~a~~---------------------------ls~Sq--kglLA~~~G~~v~iw~d~~~~s~~~~~  371 (545)
T KOG1272|consen  322 LRNFYQLHTYRT-PHPASN---------------------------LSLSQ--KGLLALSYGDHVQIWKDALKGSGHGET  371 (545)
T ss_pred             eccccccceeec-CCCccc---------------------------ccccc--ccceeeecCCeeeeehhhhcCCCCCCc
Confidence            987665544432 111111                           13333  345556666679999522 11  1111


Q ss_pred             cccCc--ccCEEEEEEcCCCCEEEEEeCCC
Q 010816          466 DLPGH--ADEVFAVDWSPDGEKVASGGKDR  493 (500)
Q Consensus       466 ~~~~h--~~~V~~l~~s~dg~~l~s~~~D~  493 (500)
                      ....|  .+.|..|.|-|-+..|..|..-|
T Consensus       372 pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  372 PYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             chhhhccCcccccceeccHHHeeeccccCC
Confidence            11122  23788888888766666555444

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.58  E-value=5.1e-12  Score=119.41  Aligned_cols=156  Identities=15%  Similarity=0.173  Sum_probs=97.9

Q ss_pred             ccEEEEEEcCCCCeEEEEe-CCCcEEEEeCCC-Ccee-EEecCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCc
Q 010816          109 EAVLSVAFSPDGRQLASGS-GDTTVRLWDLNT-QTPM-FKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKP  184 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~-~d~~i~iwd~~~-~~~~-~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~~wd~~~~~~  184 (500)
                      +....++++|++++|+.++ .++.|.+|++.. +... .......+....+.|+|++++|++++. ++.|.+|++++...
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~  114 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI  114 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence            4566789999999987765 588999999863 3221 111112335678999999999988775 78999999864221


Q ss_pred             ccccc--cCcccceEEEEeeeeecCCCCceE-EEEeCCCcEEEEECCCCeEEE-------EecCccccEEEEEeCCCCe-
Q 010816          185 SGNPL--SGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVI-------CLSGHTLAVTCVKWGGDGV-  253 (500)
Q Consensus       185 ~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~~~-------~~~~h~~~v~~~~~~~~~~-  253 (500)
                      .....  ..+.....++.+.|     +++.+ ++...++.|.+||+.+...+.       .... ......+.|++++. 
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~p-----~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~  188 (330)
T PRK11028        115 PVAPIQIIEGLEGCHSANIDP-----DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQY  188 (330)
T ss_pred             CCCceeeccCCCcccEeEeCC-----CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCE
Confidence            11111  01112233444544     34444 566677999999997633221       1111 12345688999874 


Q ss_pred             EEEEeC-CCeEEEEeCCC
Q 010816          254 IYTGSQ-DCTIKVWETTQ  270 (500)
Q Consensus       254 l~t~~~-dg~i~lwd~~~  270 (500)
                      ++++.. +++|.+||+..
T Consensus       189 lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        189 AYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             EEEEecCCCEEEEEEEeC
Confidence            555554 89999999863

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=3.5e-13  Score=119.10  Aligned_cols=243  Identities=17%  Similarity=0.264  Sum_probs=163.4

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      .|...|+|++|....+.|.+|+.+++|..-|+++.+.+..+.  ...+.|+.+..+|..+.|++.+.++.|.+||.+...
T Consensus       103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             ccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            467899999999999999999999999999999988776543  233589999999999999999999999999987654


Q ss_pred             ccccc--ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-------ecCccccEEEEEeCCCCe-
Q 010816          184 PSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-------LSGHTLAVTCVKWGGDGV-  253 (500)
Q Consensus       184 ~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-------~~~h~~~v~~~~~~~~~~-  253 (500)
                      ....+  +.........+-|+|..+    ..+++.+..+-+-+||.+..+....       +......-..+.|+++|. 
T Consensus       183 ~~~~~~~~AN~~~~F~t~~F~P~~P----~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q  258 (609)
T KOG4227|consen  183 NPISLVLPANSGKNFYTAEFHPETP----ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ  258 (609)
T ss_pred             CCCceeeecCCCccceeeeecCCCc----eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe
Confidence            21111  122234455666777543    5788999999999999986542211       111111113456777663 


Q ss_pred             EEEEeCCCeEEEEeCCCCeeEEEeecCCc-------eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816          254 IYTGSQDCTIKVWETTQGKLIRELKGHGH-------WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (500)
Q Consensus       254 l~t~~~dg~i~lwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (500)
                      +++--....-.+||+-..++...-..|..       .+.++++.                                    
T Consensus       259 ~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~------------------------------------  302 (609)
T KOG4227|consen  259 FMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI------------------------------------  302 (609)
T ss_pred             ehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeee------------------------------------
Confidence            43333333334556544332111111111       11111111                                    


Q ss_pred             CCCcEEEEeeCCCeEEEEcCCCCC----------------------CCceeeecccCcEEEEEECCCCCEEEEEeCCCcE
Q 010816          327 NAPERLVSGSDDFTMFLWEPAVSK----------------------QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI  384 (500)
Q Consensus       327 ~~~~~~~s~s~d~~v~~wd~~~~~----------------------~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i  384 (500)
                       ....+++||++..|++|.+....                      .....+.||...++.|.|+|...+|++.+..+.+
T Consensus       303 -~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~  381 (609)
T KOG4227|consen  303 -DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSF  381 (609)
T ss_pred             -cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhhe
Confidence             12248899999999999863211                      1123578999999999999999999999999999


Q ss_pred             EEEeC
Q 010816          385 KLWNG  389 (500)
Q Consensus       385 ~lwd~  389 (500)
                      +||..
T Consensus       382 KlWS~  386 (609)
T KOG4227|consen  382 KLWSD  386 (609)
T ss_pred             ecccc
Confidence            99974

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.56  E-value=5.9e-13  Score=115.87  Aligned_cols=334  Identities=17%  Similarity=0.292  Sum_probs=192.2

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce-----eEEecCC------------CCCEEEEEEcCCC--CEEEEE
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-----MFKCTGH------------KNWVLCIAWSADG--KHLVSG  168 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~-----~~~~~~h------------~~~v~~v~~s~~~--~~l~s~  168 (500)
                      .+-|.++.|..+|.+||||..+|.|.++.-+....     ...++.|            ...|..+.|.+++  ..++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            56788999999999999999999999997543221     1123334            2357889998865  456777


Q ss_pred             eCCCeEEEEeCCCCCcccc----cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-ecCccccE
Q 010816          169 SKAGELQCWDPQTGKPSGN----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAV  243 (500)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~h~~~v  243 (500)
                      ..|++|++|.+........    +..+....++++..           .+.+..|-.+-      ..|... -.+|+.-|
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~-----------p~~~~~~~~ve------a~prRv~aNaHtyhi  167 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL-----------PVEGRHDLEVE------ASPRRVYANAHTYHI  167 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeec-----------eeeccccceee------eeeeeeccccceeEe
Confidence            8999999998764322110    01111122222221           01111111110      011122 24788899


Q ss_pred             EEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhh
Q 010816          244 TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (500)
Q Consensus       244 ~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (500)
                      .++.+++|...+....|=.|.+|++.-...         ...-+.+.|..                -++...+..  ...
T Consensus       168 NSIS~NsD~Et~lSADdLRINLWnlei~d~---------sFnIVDIKP~n----------------mEeLteVIT--saE  220 (433)
T KOG1354|consen  168 NSISVNSDKETFLSADDLRINLWNLEIIDQ---------SFNIVDIKPAN----------------MEELTEVIT--SAE  220 (433)
T ss_pred             eeeeecCccceEeeccceeeeeccccccCC---------ceeEEEccccC----------------HHHHHHHHh--hhc
Confidence            999999999888888899999999753211         11111222210                011111000  001


Q ss_pred             hcCCCCcEEEEeeCCCeEEEEcCCCCCCCc---------------eeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPK---------------TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (500)
Q Consensus       324 ~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~---------------~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd  388 (500)
                      ........++-+|..|+|++-|++......               ..+.+--..|..+.|+++|+++++-+. -+|++||
T Consensus       221 Fhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD  299 (433)
T KOG1354|consen  221 FHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD  299 (433)
T ss_pred             cCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence            111234678889999999999987432110               111222345888999999999998644 5899999


Q ss_pred             C-CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc----
Q 010816          389 G-TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL----  463 (500)
Q Consensus       389 ~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~----  463 (500)
                      + ...+.+.++..|..--..+      |..+-.  .+..+    .--.+|+.++..+++||..+..++|++..+..    
T Consensus       300 ~nme~~pv~t~~vh~~lr~kL------c~lYEn--D~Ifd----KFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~t  367 (433)
T KOG1354|consen  300 LNMEAKPVETYPVHEYLRSKL------CSLYEN--DAIFD----KFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFT  367 (433)
T ss_pred             ccccCCcceEEeehHhHHHHH------HHHhhc--cchhh----eeEEEEcCCcceEecccccceEEEecCCCCcceeec
Confidence            9 5566676666554210000      000000  00000    00126888999999999999999999543221    


Q ss_pred             ----------------cccccCcc--------------cCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          464 ----------------KQDLPGHA--------------DEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       464 ----------------~~~~~~h~--------------~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                                      .....+..              ..++..+|+|..+.+|.+...+ ++|+.
T Consensus       368 l~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif~  432 (433)
T KOG1354|consen  368 LEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIFQ  432 (433)
T ss_pred             ccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEec
Confidence                            01111111              1355678999998888877644 66653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=1.5e-12  Score=128.97  Aligned_cols=276  Identities=18%  Similarity=0.275  Sum_probs=177.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (500)
Q Consensus       150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~  229 (500)
                      -+++.+.++-.  ++|+.|. --.|.+||..++..+......+...+.   ...........++++++.-+.+..=+...
T Consensus         7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H---~~e~~~~l~~~~~v~~~~~~~v~~~~~~~   80 (967)
T KOG0974|consen    7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH---RGEGKVKLLSGKIVTCAKSDEVYVKEASN   80 (967)
T ss_pred             cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccc---cccccceeccceEEEEEeecceeecchhh
Confidence            34455555543  5666543 457999999877543221111111111   00000111234566665544444322221


Q ss_pred             CeEEEEecCccccEEEEE-eCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEE-EEEecCcceeeeccccCCCCCC
Q 010816          230 RKCVICLSGHTLAVTCVK-WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVN-SLALSTEYALRTGAFDHTGKQY  307 (500)
Q Consensus       230 ~~~~~~~~~h~~~v~~~~-~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~  307 (500)
                      .. ...+..+   |.... +-.+..++.+..++.+-+||...+.....+........ +...-.                
T Consensus        81 ~~-~~~~s~w---i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g----------------  140 (967)
T KOG0974|consen   81 QI-IERFSDW---IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIG----------------  140 (967)
T ss_pred             hh-hhhcccc---ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEe----------------
Confidence            11 0001111   11111 12345788889999999999887766554433222111 111000                


Q ss_pred             CCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEE
Q 010816          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (500)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lw  387 (500)
                                       .+..+-++++|+.-+.|.+|++.....+ ..+.||.+.+-++.++.||+++++.|.|+++|+|
T Consensus       141 -----------------~s~~~~~i~~gsv~~~iivW~~~~dn~p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW  202 (967)
T KOG0974|consen  141 -----------------DSAEELYIASGSVFGEIIVWKPHEDNKP-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLW  202 (967)
T ss_pred             -----------------ccCcEEEEEeccccccEEEEeccccCCc-ceecccCCceEEEEEccCCcEEEEEecCcceeee
Confidence                             0112346888999999999998743333 3789999999999999999999999999999999


Q ss_pred             eCCCCceEE-EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc
Q 010816          388 NGTTGKFVA-VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD  466 (500)
Q Consensus       388 d~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~  466 (500)
                      ++.+.+... +.-+|...+.++.+                           .|+  .+++++.|-++++|+....+ +..
T Consensus       203 ~i~s~~~~~~~~fgHsaRvw~~~~---------------------------~~n--~i~t~gedctcrvW~~~~~~-l~~  252 (967)
T KOG0974|consen  203 PIDSREVLGCTGFGHSARVWACCF---------------------------LPN--RIITVGEDCTCRVWGVNGTQ-LEV  252 (967)
T ss_pred             ecccccccCcccccccceeEEEEe---------------------------ccc--eeEEeccceEEEEEecccce-ehh
Confidence            999988765 67789998887743                           566  89999999999999655433 347


Q ss_pred             ccCccc-CEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          467 LPGHAD-EVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       467 ~~~h~~-~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +.+|.+ .++.++..++...++|++.|+.+++|+
T Consensus       253 y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  253 YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             hhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            777864 689999999999999999999999996

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.49  E-value=7.8e-11  Score=111.22  Aligned_cols=295  Identities=20%  Similarity=0.187  Sum_probs=164.7

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCccccccc
Q 010816          112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNPLS  190 (500)
Q Consensus       112 ~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~  190 (500)
                      ..+.|+|||+++.+++.||.|.++|+.+.+.+.....- .....+++++||++++++. .++.+.++|.++.+..+....
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~  118 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT  118 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence            45789999999999999999999999999988777643 3467899999999998765 589999999988776543211


Q ss_pred             C------cccceEEEEeeeeecCCCCceEEEEeCC-CcEEEEECCCCeEEE-EecCccccEEEEEeCCCCe-E-EEEeCC
Q 010816          191 G------HKKWITGISWEPVHLNAPCRRFVSASKD-GDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGV-I-YTGSQD  260 (500)
Q Consensus       191 ~------~~~~v~~~~~~~~~~~~~~~~~~s~s~d-g~v~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~-l-~t~~~d  260 (500)
                      +      ....+.++...|     ....|+..-.| +.|.+-|....+.+. .............|++++. + ++...+
T Consensus       119 ~~~~~~~~~~Rv~aIv~s~-----~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s  193 (369)
T PF02239_consen  119 GGMPVDGPESRVAAIVASP-----GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS  193 (369)
T ss_dssp             -EE-TTTS---EEEEEE-S-----SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred             ccccccccCCCceeEEecC-----CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccc
Confidence            1      122444554333     22346555554 777777876543322 1111223445678888873 3 445567


Q ss_pred             CeEEEEeCCCCeeEEEeec----CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          261 CTIKVWETTQGKLIRELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                      +.|-++|..+++.+..+..    |..++..+ .++.+...... .                         +.....++.-
T Consensus       194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~-~-------------------------~~~~~~~~~i  246 (369)
T PF02239_consen  194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWAT-S-------------------------GLGYFAIPLI  246 (369)
T ss_dssp             TEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEE-E-------------------------BSSSSEEEEE
T ss_pred             ceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEee-c-------------------------cccceecccc
Confidence            8999999999887665432    22222222 12221000000 0                         0001111111


Q ss_pred             CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE----eCCCcEEEEeCCCCceEEEEeCCcc-cEEEEEee
Q 010816          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA----SFDKSIKLWNGTTGKFVAVFRGHVG-PVYQIRFE  411 (500)
Q Consensus       337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg----s~Dg~i~lwd~~~~~~~~~~~~h~~-~v~~~~~~  411 (500)
                      ....+.+||....+ ....+...... .-+..+|+++++.+.    ...+.|.++|.++.+.+..+....+ .+..+   
T Consensus       247 g~~~v~v~d~~~wk-vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~---  321 (369)
T PF02239_consen  247 GTDPVSVHDDYAWK-VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM---  321 (369)
T ss_dssp             E--TTT-STTTBTS-EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE---
T ss_pred             cCCccccchhhcCe-EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc---
Confidence            11233345544322 23334333444 667889999999987    4458999999999877666542221 23333   


Q ss_pred             eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC--cEEEEECCCcccccccc
Q 010816          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS--TLKVWDIRTQKLKQDLP  468 (500)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~  468 (500)
                                              .|+++|+++..+..++  .|.+||..+.++++.++
T Consensus       322 ------------------------ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  322 ------------------------EFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             ------------------------EE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             ------------------------EECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence                                    5799999777665443  69999999998887665

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.49  E-value=2.9e-10  Score=107.42  Aligned_cols=292  Identities=20%  Similarity=0.250  Sum_probs=163.5

Q ss_pred             EEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeee
Q 010816          124 ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP  203 (500)
Q Consensus       124 at~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~  203 (500)
                      ++-..++.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.......+            
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G------------   77 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG------------   77 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S------------
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC------------
Confidence            45567899999999999888888755444455789999999999999999999999877643211000            


Q ss_pred             eecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EE-EEeCCCeEEEEeCCCCeeEEEeecCC
Q 010816          204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRELKGHG  281 (500)
Q Consensus       204 ~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-t~~~dg~i~lwd~~~~~~~~~~~~~~  281 (500)
                                                           ..-..+++++||. ++ +...++.+.++|..+.+.++.+....
T Consensus        78 -------------------------------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~  120 (369)
T PF02239_consen   78 -------------------------------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG  120 (369)
T ss_dssp             -------------------------------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred             -------------------------------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence                                                 1123456666663 33 34467888888888877777654321


Q ss_pred             -------ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce
Q 010816          282 -------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT  354 (500)
Q Consensus       282 -------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~  354 (500)
                             ..+.++..++.                                   .++.+++--+.+.|.+-|.........
T Consensus       121 ~~~~~~~~Rv~aIv~s~~-----------------------------------~~~fVv~lkd~~~I~vVdy~d~~~~~~  165 (369)
T PF02239_consen  121 MPVDGPESRVAAIVASPG-----------------------------------RPEFVVNLKDTGEIWVVDYSDPKNLKV  165 (369)
T ss_dssp             E-TTTS---EEEEEE-SS-----------------------------------SSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred             ccccccCCCceeEEecCC-----------------------------------CCEEEEEEccCCeEEEEEeccccccce
Confidence                   12333322221                                   122333334446666666544333333


Q ss_pred             eeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceEEEEeC----CcccEEEEE---eeeeeeecCCCCc----
Q 010816          355 RMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRG----HVGPVYQIR---FELIYCFRYPSNF----  422 (500)
Q Consensus       355 ~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~~~~~~~~----h~~~v~~~~---~~~~~~~~~~~~~----  422 (500)
                      ....-........|+|++++++.+ -.+..|-++|..+++.+..+..    |.+++..+.   +...+.......+    
T Consensus       166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~  245 (369)
T PF02239_consen  166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL  245 (369)
T ss_dssp             EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred             eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccc
Confidence            333334556788999999987665 4567899999999988765432    444444332   1112221111110    


Q ss_pred             --------------eee--eeccccceeeEEcCCCCEEEEE----ECCCcEEEEECCCccccccccCcc-cCEEEEEEcC
Q 010816          423 --------------YCV--VDMSCCMSLYSWSADSRLLLSG----SKDSTLKVWDIRTQKLKQDLPGHA-DEVFAVDWSP  481 (500)
Q Consensus       423 --------------~~~--~~~~~~~~~~~~s~~~~~l~s~----s~d~~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~  481 (500)
                                    ..+  +.......-+..+|+++++...    ...+.|.++|.++.+....+.... .++..+.|++
T Consensus       246 ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~  325 (369)
T PF02239_consen  246 IGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP  325 (369)
T ss_dssp             EE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T
T ss_pred             ccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC
Confidence                          011  1111112223468999999988    345799999999987766654322 3588999999


Q ss_pred             CCCEEEEEeCC--CcEEEec
Q 010816          482 DGEKVASGGKD--RVLKLWM  499 (500)
Q Consensus       482 dg~~l~s~~~D--~~v~iW~  499 (500)
                      ||+++..+..|  +.|.+++
T Consensus       326 dG~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  326 DGKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             TSSEEEEEEE--TTEEEEEE
T ss_pred             CCCEEEEEEecCCCEEEEEE
Confidence            99977554443  3688876

...

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=2.7e-11  Score=117.89  Aligned_cols=233  Identities=17%  Similarity=0.189  Sum_probs=140.1

Q ss_pred             CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (500)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (500)
                      ..|.+||....... .+..+...+.+.+|+|||+.|+..+.   +..|.+||+.+|+...                    
T Consensus       179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------  237 (429)
T PRK03629        179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------  237 (429)
T ss_pred             eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------
Confidence            36888888765443 33456678999999999999886543   3457777766553211                    


Q ss_pred             CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EE-EEeCCC--eEEEEeCCCCeeEEEeecCCc
Q 010816          207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDC--TIKVWETTQGKLIRELKGHGH  282 (500)
Q Consensus       207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-t~~~dg--~i~lwd~~~~~~~~~~~~~~~  282 (500)
                                                +..+.++   +....|+|||. |+ +.+.+|  .|.+||+.+++..+ +..+..
T Consensus       238 --------------------------l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~  287 (429)
T PRK03629        238 --------------------------VASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRS  287 (429)
T ss_pred             --------------------------ccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCC
Confidence                                      0001111   12356777763 33 233344  48888988776543 322333


Q ss_pred             eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC-CCeEEEE--cCCCCCCCceeeecc
Q 010816          283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DFTMFLW--EPAVSKQPKTRMTGH  359 (500)
Q Consensus       283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~-d~~v~~w--d~~~~~~~~~~~~~h  359 (500)
                      .+....++|+                                    +..++..+. ++...+|  |+...  ....+..+
T Consensus       288 ~~~~~~wSPD------------------------------------G~~I~f~s~~~g~~~Iy~~d~~~g--~~~~lt~~  329 (429)
T PRK03629        288 NNTEPTWFPD------------------------------------SQNLAYTSDQAGRPQVYKVNINGG--APQRITWE  329 (429)
T ss_pred             CcCceEECCC------------------------------------CCEEEEEeCCCCCceEEEEECCCC--CeEEeecC
Confidence            3445555554                                    234544443 3444444  54332  22333334


Q ss_pred             cCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816          360 QQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS  436 (500)
Q Consensus       360 ~~~v~~l~~sp~g~~lasgs~D---g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (500)
                      ........|+|||++|+..+.+   ..|.+||+.+++.......+.                             ....+
T Consensus       330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~-----------------------------~~~p~  380 (429)
T PRK03629        330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFL-----------------------------DETPS  380 (429)
T ss_pred             CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCC-----------------------------CCCce
Confidence            4445678999999999876654   358889988776432111100                             01126


Q ss_pred             EcCCCCEEEEEECCCc---EEEEECCCccccccccCcccCEEEEEEcC
Q 010816          437 WSADSRLLLSGSKDST---LKVWDIRTQKLKQDLPGHADEVFAVDWSP  481 (500)
Q Consensus       437 ~s~~~~~l~s~s~d~~---v~iwd~~~~~~~~~~~~h~~~V~~l~~s~  481 (500)
                      |+|||++|+.++.++.   +.++++ .++....+.+|.+.+...+|+|
T Consensus       381 ~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        381 IAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            8999999999998865   566776 4555566778888899999998

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.1e-11  Score=120.80  Aligned_cols=236  Identities=18%  Similarity=0.205  Sum_probs=133.9

Q ss_pred             CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (500)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (500)
                      ..+.++|..... ...+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++...  +.                
T Consensus       176 ~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~----------------  236 (427)
T PRK02889        176 YQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--VA----------------  236 (427)
T ss_pred             cEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--ee----------------
Confidence            457777775433 33455677889999999999999877643   347777776553211  00                


Q ss_pred             CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-EEEeCCCeEEEEe--CCCCeeEEEeecCCc
Q 010816          207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDCTIKVWE--TTQGKLIRELKGHGH  282 (500)
Q Consensus       207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~t~~~dg~i~lwd--~~~~~~~~~~~~~~~  282 (500)
                                                     .....+.+..|+||+. | ++.+.++...+|.  +..+. .+.+..+..
T Consensus       237 -------------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~  284 (427)
T PRK02889        237 -------------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSG  284 (427)
T ss_pred             -------------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCC
Confidence                                           0011223456777763 3 3456666655554  43333 333333333


Q ss_pred             eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-CCCeEEEEcCCCCCCCceeeecccC
Q 010816          283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGHQQ  361 (500)
Q Consensus       283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~~~~~~~~~~h~~  361 (500)
                      ......++++                                    +..++..+ .++...+|...........+..+..
T Consensus       285 ~~~~~~wSpD------------------------------------G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~  328 (427)
T PRK02889        285 IDTEPFFSPD------------------------------------GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS  328 (427)
T ss_pred             CCcCeEEcCC------------------------------------CCEEEEEecCCCCcEEEEEECCCCceEEEecCCC
Confidence            3334445544                                    23344333 3455566654322222222222222


Q ss_pred             cEEEEEECCCCCEEEEEeCCC---cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816          362 LVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS  438 (500)
Q Consensus       362 ~v~~l~~sp~g~~lasgs~Dg---~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  438 (500)
                      .....+|||||++|+..+.++   .|.+||+.+++......+.  .                           ....+|+
T Consensus       329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~---------------------------~~~p~~s  379 (427)
T PRK02889        329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--R---------------------------DESPSFA  379 (427)
T ss_pred             CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--C---------------------------ccCceEC
Confidence            344678999999998777654   6999999887643221110  0                           0112689


Q ss_pred             CCCCEEEEEECCC---cEEEEECCCccccccccCcccCEEEEEEcCC
Q 010816          439 ADSRLLLSGSKDS---TLKVWDIRTQKLKQDLPGHADEVFAVDWSPD  482 (500)
Q Consensus       439 ~~~~~l~s~s~d~---~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d  482 (500)
                      |||++|+.++.++   .+.+.++ .++....+..+.+.+...+|+|-
T Consensus       380 pdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        380 PNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            9999998877654   3455555 35555556566677788899873

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=1.8e-11  Score=113.70  Aligned_cols=285  Identities=17%  Similarity=0.271  Sum_probs=178.0

Q ss_pred             CCcccEEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCceeEEecCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816          106 GHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHK--NWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~l-at~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~  182 (500)
                      +|...-+.|..+|||+++ |||..--.|++||+..-..  .+..|.  ..|.-.-.+.|-..++--..|.+|.+-.- -|
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G  125 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YG  125 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhh-cC
Confidence            466677889999999975 6777889999999875432  222332  22333333334334444455666655421 11


Q ss_pred             CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCC
Q 010816          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDC  261 (500)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg  261 (500)
                      ......+..   .-..+.++    ...|..++ ++....|+-.+++.|..+..+.-....+.++..++ .++|++|+.||
T Consensus       126 ~hy~~RIP~---~GRDm~y~----~~scDly~-~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g  197 (703)
T KOG2321|consen  126 RHYRTRIPK---FGRDMKYH----KPSCDLYL-VGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG  197 (703)
T ss_pred             eeeeeecCc---CCcccccc----CCCccEEE-eecCcceEEEEccccccccccccccccceeeeecCccceEEecccCc
Confidence            111000000   00112222    12344444 44556777788888888877776778888888876 46778888899


Q ss_pred             eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (500)
Q Consensus       262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v  341 (500)
                      .|..||.++...+..+..... |.                                                        
T Consensus       198 ~VEfwDpR~ksrv~~l~~~~~-v~--------------------------------------------------------  220 (703)
T KOG2321|consen  198 VVEFWDPRDKSRVGTLDAASS-VN--------------------------------------------------------  220 (703)
T ss_pred             eEEEecchhhhhheeeecccc-cC--------------------------------------------------------
Confidence            999999887654443321100 00                                                        


Q ss_pred             EEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc--cEEEEEeeeeeeecCC
Q 010816          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG--PVYQIRFELIYCFRYP  419 (500)
Q Consensus       342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~  419 (500)
                              ..+   .......|+++.|+.+|-.+++|..+|.|.|||+++.+.+.+ +.|..  +|..+           
T Consensus       221 --------s~p---g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l-----------  277 (703)
T KOG2321|consen  221 --------SHP---GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKL-----------  277 (703)
T ss_pred             --------CCc---cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeee-----------
Confidence                    000   001123589999999999999999999999999999877653 45544  33333           


Q ss_pred             CCceeeeeccccceeeEEcCCCCEEEEEECC-CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d-~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                                      .|.+.++.=...+.| ..++|||-.+++....+... ..+..+++-|++-.+.++-.+..+..+
T Consensus       278 ----------------~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  278 ----------------DWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             ----------------cccccCCCceEEecchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeE
Confidence                            344443332333344 56899999999887766543 348899999999999999888766543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=8.7e-12  Score=110.57  Aligned_cols=245  Identities=13%  Similarity=0.183  Sum_probs=165.3

Q ss_pred             cccEEEEEEcCCCC--eEEEEeCCCcEEEEeCCCCceeE------EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          108 TEAVLSVAFSPDGR--QLASGSGDTTVRLWDLNTQTPMF------KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       108 ~~~V~~~~~sp~~~--~lat~~~d~~i~iwd~~~~~~~~------~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      ...|.++.|.-+++  .|...+.|..+............      .....+.+|..+... | ..|++|-.+|.+++|..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEec
Confidence            44566777765543  45555566667766665443322      223445566666553 3 47888899999999998


Q ss_pred             CCCCcccc---cccCcccceEEEEeeeeecCCCCceEEEEeCC--CcEEEEECCCCeEEEEecC-------cc--ccEEE
Q 010816          180 QTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKD--GDARIWDVSLRKCVICLSG-------HT--LAVTC  245 (500)
Q Consensus       180 ~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d--g~v~iwd~~~~~~~~~~~~-------h~--~~v~~  245 (500)
                      +.+..-..   .+..+ ..+..+.-.+.    ....+++||..  ..++|||++..+.+..-+.       -.  ..+++
T Consensus       133 k~~d~hss~l~~la~g-~g~~~~r~~~~----~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td  207 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATG-PGLYDVRQTDT----DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD  207 (412)
T ss_pred             cCCccccccceeeecC-CceeeeccCCC----CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence            75431100   01111 11222222221    22467779999  8999999988765543221       11  23456


Q ss_pred             EEeCCC---CeEEEEeCCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816          246 VKWGGD---GVIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (500)
Q Consensus       246 ~~~~~~---~~l~t~~~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (500)
                      +.|-+.   ..|++++.-+.+|+||.+.++ .+..+.....++.++...|.                             
T Consensus       208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~-----------------------------  258 (412)
T KOG3881|consen  208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS-----------------------------  258 (412)
T ss_pred             ceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC-----------------------------
Confidence            777544   479999999999999998663 45555555566666655443                             


Q ss_pred             hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE
Q 010816          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (500)
Q Consensus       322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~  395 (500)
                             +..+++|..-+.+..||.+........+.+-.+.|+++..+|.+++||+++.|+.|||+|.++.+++
T Consensus       259 -------gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  259 -------GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             -------CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence                   4568889999999999998877777778888899999999999999999999999999999986554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.46  E-value=4.1e-12  Score=108.80  Aligned_cols=108  Identities=31%  Similarity=0.609  Sum_probs=83.6

Q ss_pred             cCcEEEEEECCCCCEEEEE--eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816          360 QQLVNHVYFSPDGQWVASA--SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (500)
Q Consensus       360 ~~~v~~l~~sp~g~~lasg--s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (500)
                      ...|.+++|+|+|+.||+.  ..++.|.+||++ ++.+..+.  ......+                           .|
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i---------------------------~w  108 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTI---------------------------SW  108 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEE---------------------------EE
Confidence            4469999999999987654  467899999996 55555443  2333333                           68


Q ss_pred             cCCCCEEEEEECC---CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeC------CCcEEEec
Q 010816          438 SADSRLLLSGSKD---STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK------DRVLKLWM  499 (500)
Q Consensus       438 s~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~------D~~v~iW~  499 (500)
                      ||+|++|+.|+.+   |.+.+||+++.+.+.... | ..+..++|+|||++|++++.      |+.++||+
T Consensus       109 sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~  177 (194)
T PF08662_consen  109 SPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWS  177 (194)
T ss_pred             CCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence            9999999998754   569999999888776654 3 34789999999999999875      78888886

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1.2e-11  Score=120.79  Aligned_cols=233  Identities=19%  Similarity=0.201  Sum_probs=137.6

Q ss_pred             CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (500)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (500)
                      ..|.+||.....+ ..+..+...+.+..|+|||+.|+..+.+   ..|.+||+.+++...  +.                
T Consensus       184 ~~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--l~----------------  244 (433)
T PRK04922        184 YALQVADSDGYNP-QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--VA----------------  244 (433)
T ss_pred             EEEEEECCCCCCc-eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--ec----------------
Confidence            4689999865443 3455677789999999999999987643   357777776553210  00                


Q ss_pred             CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-EEEeCCC--eEEEEeCCCCeeEEEeecCCc
Q 010816          207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDC--TIKVWETTQGKLIRELKGHGH  282 (500)
Q Consensus       207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~t~~~dg--~i~lwd~~~~~~~~~~~~~~~  282 (500)
                                                     .......+..|++||. | ++.+.+|  .|.+||+.+++.. .+..+..
T Consensus       245 -------------------------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~  292 (433)
T PRK04922        245 -------------------------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFG  292 (433)
T ss_pred             -------------------------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCC
Confidence                                           0011122456777763 3 3444444  5888898877643 3333333


Q ss_pred             eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-CCCe--EEEEcCCCCCCCceeeecc
Q 010816          283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFT--MFLWEPAVSKQPKTRMTGH  359 (500)
Q Consensus       283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~d~~--v~~wd~~~~~~~~~~~~~h  359 (500)
                      .....+++++                                    +..++..+ .++.  +++++.....  ...+..+
T Consensus       293 ~~~~~~~spD------------------------------------G~~l~f~sd~~g~~~iy~~dl~~g~--~~~lt~~  334 (433)
T PRK04922        293 IDTEPTWAPD------------------------------------GKSIYFTSDRGGRPQIYRVAASGGS--AERLTFQ  334 (433)
T ss_pred             CccceEECCC------------------------------------CCEEEEEECCCCCceEEEEECCCCC--eEEeecC
Confidence            3334455543                                    23444444 3444  5555553322  2223223


Q ss_pred             cCcEEEEEECCCCCEEEEEeCCC---cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816          360 QQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS  436 (500)
Q Consensus       360 ~~~v~~l~~sp~g~~lasgs~Dg---~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (500)
                      .......+|||||++|+..+.++   .|.+||+.+++... +. +....                           ...+
T Consensus       335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~---------------------------~~p~  385 (433)
T PRK04922        335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLD---------------------------ESPS  385 (433)
T ss_pred             CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCC---------------------------CCce
Confidence            33345689999999998765443   69999998876542 21 11010                           1126


Q ss_pred             EcCCCCEEEEEECC---CcEEEEECCCccccccccCcccCEEEEEEcC
Q 010816          437 WSADSRLLLSGSKD---STLKVWDIRTQKLKQDLPGHADEVFAVDWSP  481 (500)
Q Consensus       437 ~s~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~  481 (500)
                      |+|||++++..+.+   +.+.++++.. .....+..+.+.+...+|+|
T Consensus       386 ~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        386 FAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence            89999988877654   3577788754 34455555566677888887

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.46  E-value=1.6e-11  Score=113.21  Aligned_cols=242  Identities=20%  Similarity=0.244  Sum_probs=149.7

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee----EEecCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEEeCCC
Q 010816          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWS-----ADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~~v~~s-----~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      +....++-.|++|+..-.+ .+.+|+...+..+    ....-....-.|-+|+     +++--|+.|-..|.+++.|+..
T Consensus       126 ~~~~~~~~~gd~lcFnvg~-~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~  204 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNVGR-ELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN  204 (636)
T ss_pred             eeeccccCCCCEEEEecCC-eEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence            4445555567777665333 5788887643221    1111111223444553     4566778888889999998765


Q ss_pred             CCcccccc----cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeC--CCC-eE
Q 010816          182 GKPSGNPL----SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG--GDG-VI  254 (500)
Q Consensus       182 ~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~-~l  254 (500)
                      .+.. ..+    .-.+..|+++.|.|...    ..|+.+-.+|.+.+||...-          ...+...|.  +++ .+
T Consensus       205 ~~~s-klfne~r~i~ktsvT~ikWvpg~~----~~Fl~a~~sGnlyly~~~~~----------~~~t~p~~~~~k~~~~f  269 (636)
T KOG2394|consen  205 FEVS-KLFNEERLINKSSVTCIKWVPGSD----SLFLVAHASGNLYLYDKEIV----------CGATAPSYQALKDGDQF  269 (636)
T ss_pred             hHHH-HhhhhcccccccceEEEEEEeCCC----ceEEEEEecCceEEeecccc----------ccCCCCcccccCCCCee
Confidence            3211 111    11246789999998543    47888899999999987311          111111111  111 11


Q ss_pred             EEEeCCCeEEEEeC-CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816          255 YTGSQDCTIKVWET-TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (500)
Q Consensus       255 ~t~~~dg~i~lwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (500)
                      .       |..|.- .+...+.....-...|..++++++                                    +.+|+
T Consensus       270 ~-------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D------------------------------------G~~LA  306 (636)
T KOG2394|consen  270 A-------ILTSKSKKTRNPVARWHIGEGSINEFAFSPD------------------------------------GKYLA  306 (636)
T ss_pred             E-------EeeeeccccCCccceeEeccccccceeEcCC------------------------------------CceEE
Confidence            1       111110 011111111112224555555554                                    46799


Q ss_pred             EeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeee
Q 010816          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL  412 (500)
Q Consensus       334 s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  412 (500)
                      +-|.||.++|||..... ....++.--....|++|||||++|++|++|--|.||....++.+....||+.+|..|+|..
T Consensus       307 ~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  307 TVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            99999999999965432 2223334456789999999999999999999999999999999999999999999999975

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=3.6e-11  Score=105.63  Aligned_cols=198  Identities=22%  Similarity=0.318  Sum_probs=128.9

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      .+..++|++.-.-+|.+..|-+|+|||-....+...-..-...|.|++|-|.+ +.|+.|+ -+-|.+|.....-...  
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~--  176 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN--  176 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc--
Confidence            57788999988888999999999999987643322222345679999999975 4555555 4568999764211000  


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEe-CCCeEEEE
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVW  266 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~-~dg~i~lw  266 (500)
                                             +.+.+...+..         .+..-.|| .+|+++.|.+||. +++++ .|..|.+|
T Consensus       177 -----------------------r~~~~~s~~~~---------qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iW  223 (445)
T KOG2139|consen  177 -----------------------RNIRMMSTHHL---------QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIW  223 (445)
T ss_pred             -----------------------cccccccccch---------hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEE
Confidence                                   00011111111         11122455 7899999999985 66665 46789999


Q ss_pred             eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (500)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~  346 (500)
                      |..++..+.........+.-+.++|+                                    ++.++++.-|+..++|..
T Consensus       224 dpdtg~~~pL~~~glgg~slLkwSPd------------------------------------gd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  224 DPDTGQKIPLIPKGLGGFSLLKWSPD------------------------------------GDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             cCCCCCcccccccCCCceeeEEEcCC------------------------------------CCEEEEecccceeeeehh
Confidence            99998766554344455667778776                                    457889999999999964


Q ss_pred             CCCCCCceeeecccCcEEEEEECCCCCEEEEEeC
Q 010816          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF  380 (500)
Q Consensus       347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~  380 (500)
                      ...... .+..-.++.|...+|+|+|.+|.-.+.
T Consensus       268 ~q~wt~-erw~lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  268 NQSWTK-ERWILGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             ccccee-cceeccCCceeeeeecCCCCEEEEEEc
Confidence            332211 111122347899999999987765443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=8.1e-10  Score=102.82  Aligned_cols=312  Identities=16%  Similarity=0.228  Sum_probs=179.1

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      .+....+++++|+++|-+ .++.++|++..+...+.....  ..+.++.|+|-|.+|.+=   ..-.+|...+       
T Consensus        35 ~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~---e~~~i~~~~~-------  101 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTW---EPWAIYGPKN-------  101 (566)
T ss_pred             CcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccc---cccccccCCC-------
Confidence            346678899999987765 566899999888754443332  278999999999888651   0001111000       


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeC
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET  268 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~  268 (500)
                          .                        ..-.+++|++.++.....+......-++..|+.|..+++---.+.+.+|+.
T Consensus       102 ----~------------------------~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~  153 (566)
T KOG2315|consen  102 ----A------------------------SNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDL  153 (566)
T ss_pred             ----C------------------------CCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEec
Confidence                0                        023467777777444433333222225777888876665555678999987


Q ss_pred             CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-----EeeCCCeEEE
Q 010816          269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-----SGSDDFTMFL  343 (500)
Q Consensus       269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~s~d~~v~~  343 (500)
                      ..-+.. .-+.|...+..+.++|...                                  ...++     .++.-..+++
T Consensus       154 ~~f~~~-~~kl~~~~i~~f~lSpgp~----------------------------------~~~vAvyvPe~kGaPa~vri  198 (566)
T KOG2315|consen  154 GSFKTI-QHKLSVSGITMLSLSPGPE----------------------------------PPFVAVYVPEKKGAPASVRI  198 (566)
T ss_pred             CCccce-eeeeeccceeeEEecCCCC----------------------------------CceEEEEccCCCCCCcEEEE
Confidence            653221 1223455666777666411                                  11111     2455667888


Q ss_pred             EcCCCCCC--CceeeecccCcEEEEEECCCCC-E--EEEEeCCC---------cEEEEeCCCCceEEEEeCCcccEEEEE
Q 010816          344 WEPAVSKQ--PKTRMTGHQQLVNHVYFSPDGQ-W--VASASFDK---------SIKLWNGTTGKFVAVFRGHVGPVYQIR  409 (500)
Q Consensus       344 wd~~~~~~--~~~~~~~h~~~v~~l~~sp~g~-~--lasgs~Dg---------~i~lwd~~~~~~~~~~~~h~~~v~~~~  409 (500)
                      |.......  +...-.-....=..+.|++-|. +  |++..-|.         ++++.+.+ |+...+--.-.++|+++.
T Consensus       199 ~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~  277 (566)
T KOG2315|consen  199 YKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVT  277 (566)
T ss_pred             eccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEE
Confidence            87542111  1111000112223467777664 2  23333343         57777777 332222112478898888


Q ss_pred             eeee-----eeecCCCCceeeeeccc---------cceeeEEcCCCCEEEEEECC---CcEEEEECCCccccccccCccc
Q 010816          410 FELI-----YCFRYPSNFYCVVDMSC---------CMSLYSWSADSRLLLSGSKD---STLKVWDIRTQKLKQDLPGHAD  472 (500)
Q Consensus       410 ~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~~s~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~  472 (500)
                      +...     .++-+-.....+.+..|         .-..+-|+|.|++++.++.+   |.|-|||+...+++..+..-..
T Consensus       278 W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t  357 (566)
T KOG2315|consen  278 WSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT  357 (566)
T ss_pred             ECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc
Confidence            7421     12211111111222211         11223589999999988865   7899999999888777665433


Q ss_pred             CEEEEEEcCCCCEEEEEeC------CCcEEEec
Q 010816          473 EVFAVDWSPDGEKVASGGK------DRVLKLWM  499 (500)
Q Consensus       473 ~V~~l~~s~dg~~l~s~~~------D~~v~iW~  499 (500)
                        +-++|+|||++|+|++.      |+-++||+
T Consensus       358 --t~~eW~PdGe~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  358 --TVFEWSPDGEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             --eEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence              45789999999999876      67788886

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.44  E-value=3e-10  Score=109.46  Aligned_cols=307  Identities=13%  Similarity=0.056  Sum_probs=185.2

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEE
Q 010816          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG  198 (500)
Q Consensus       119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~  198 (500)
                      .+..++.++.++.+.-+|..+++.+....-..........  ++..++.++.++.+..+|..+|+........  ..+. 
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~-  138 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVL-  138 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceee-
Confidence            3667888889999999999999887665433321122222  4678888999999999999998764321111  1111 


Q ss_pred             EEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEE-----EEEeCCCCeEEEEeCCCeEEEEeCCCCee
Q 010816          199 ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT-----CVKWGGDGVIYTGSQDCTIKVWETTQGKL  273 (500)
Q Consensus       199 ~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~-----~~~~~~~~~l~t~~~dg~i~lwd~~~~~~  273 (500)
                        -.|..   ....++.++.++.+..||.++++.+..+........     +... .++.++.+..++.+..+|..+|+.
T Consensus       139 --~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~  212 (377)
T TIGR03300       139 --SPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQP  212 (377)
T ss_pred             --cCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCE
Confidence              11211   224677788899999999999987766543222111     1111 135788888899999999999876


Q ss_pred             EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCc
Q 010816          274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK  353 (500)
Q Consensus       274 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~  353 (500)
                      +........         ..     ...     .   .     ...............++.++.++.++.+|....+...
T Consensus       213 ~W~~~~~~~---------~g-----~~~-----~---~-----~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W  265 (377)
T TIGR03300       213 LWEQRVALP---------KG-----RTE-----L---E-----RLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW  265 (377)
T ss_pred             eeeeccccC---------CC-----CCc-----h---h-----hhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE
Confidence            654321000         00     000     0   0     0000000000013467778889999999976543221


Q ss_pred             eeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccce
Q 010816          354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS  433 (500)
Q Consensus       354 ~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (500)
                      ...  .. ....  ...++..+..++.||.+..+|..+|+.+-..........                          +
T Consensus       266 ~~~--~~-~~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~--------------------------s  314 (377)
T TIGR03300       266 KRD--AS-SYQG--PAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQL--------------------------T  314 (377)
T ss_pred             eec--cC-CccC--ceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcc--------------------------c
Confidence            111  11 1111  112467788888999999999999987643321111000                          0


Q ss_pred             eeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEE-EEEcCCCCEEEEEeCCCcEEEe
Q 010816          434 LYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFA-VDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       434 ~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                        +....+..+++++.||.++++|..+++.+..++.+...+.. ..+. + ..|+.++.||.|+.+
T Consensus       315 --sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       315 --APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             --cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence              00124668889999999999999999988777665544332 2222 3 469999999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.2e-10  Score=114.16  Aligned_cols=232  Identities=16%  Similarity=0.166  Sum_probs=137.5

Q ss_pred             CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (500)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (500)
                      ..|.+||..+..+ ..+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++...                    
T Consensus       182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------  240 (435)
T PRK05137        182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------  240 (435)
T ss_pred             eEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------
Confidence            3788888865443 456678889999999999999887764   3567777776553210                    


Q ss_pred             CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-EEEeCCCe--EEEEeCCCCeeEEEeecCCc
Q 010816          207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDCT--IKVWETTQGKLIRELKGHGH  282 (500)
Q Consensus       207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~t~~~dg~--i~lwd~~~~~~~~~~~~~~~  282 (500)
                                                   +..+...+.+..|++||. | ++.+.++.  |.+||+.++.. +.+..+..
T Consensus       241 -----------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~  290 (435)
T PRK05137        241 -----------------------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPA  290 (435)
T ss_pred             -----------------------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCC
Confidence                                         111122334567888773 3 45555554  77778877654 33443433


Q ss_pred             eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-CC--CeEEEEcCCCCCCCceeeecc
Q 010816          283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DD--FTMFLWEPAVSKQPKTRMTGH  359 (500)
Q Consensus       283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~d--~~v~~wd~~~~~~~~~~~~~h  359 (500)
                      ......++|+                                    +..++..+ .+  ..|+++|.....  ...+..+
T Consensus       291 ~~~~~~~spD------------------------------------G~~i~f~s~~~g~~~Iy~~d~~g~~--~~~lt~~  332 (435)
T PRK05137        291 IDTSPSYSPD------------------------------------GSQIVFESDRSGSPQLYVMNADGSN--PRRISFG  332 (435)
T ss_pred             ccCceeEcCC------------------------------------CCEEEEEECCCCCCeEEEEECCCCC--eEEeecC
Confidence            3444455544                                    23444433 23  357777754322  2334434


Q ss_pred             cCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816          360 QQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS  436 (500)
Q Consensus       360 ~~~v~~l~~sp~g~~lasgs~D---g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (500)
                      ...+....|+|||+.|+..+.+   ..|.+||+.++.. ..+.. ...                           ....+
T Consensus       333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~---------------------------~~~p~  383 (435)
T PRK05137        333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFL---------------------------VEGPT  383 (435)
T ss_pred             CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCC---------------------------CCCCe
Confidence            4556678899999999877654   3688888755432 21111 000                           11237


Q ss_pred             EcCCCCEEEEEECC------CcEEEEECCCccccccccCcccCEEEEEEcC
Q 010816          437 WSADSRLLLSGSKD------STLKVWDIRTQKLKQDLPGHADEVFAVDWSP  481 (500)
Q Consensus       437 ~s~~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~  481 (500)
                      |+|||++|+..+.+      ..+.++|+..+.. ..+.. .+.+...+|+|
T Consensus       384 ~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp  432 (435)
T PRK05137        384 WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASDPAWSP  432 (435)
T ss_pred             ECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CCCccCcccCC
Confidence            89999998876543      2577788766544 33432 34466778887

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.5e-11  Score=108.00  Aligned_cols=202  Identities=24%  Similarity=0.433  Sum_probs=130.9

Q ss_pred             cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCC
Q 010816          194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ  270 (500)
Q Consensus       194 ~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~  270 (500)
                      ..+..++|++ ++.    .|+++..|-.|++||-+. ++...++ .....|+|++|.|.+  .|+.|+.. .|.+|....
T Consensus        99 ~dlr~~aWhq-H~~----~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~  171 (445)
T KOG2139|consen   99 IDLRGVAWHQ-HII----AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSR  171 (445)
T ss_pred             cceeeEeech-hhh----hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCc
Confidence            3456788887 332    588999999999999876 4443333 345679999998754  46666664 578896532


Q ss_pred             CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC
Q 010816          271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (500)
Q Consensus       271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~  350 (500)
                      .-..       .                                                +...+.....          
T Consensus       172 tln~-------~------------------------------------------------r~~~~~s~~~----------  186 (445)
T KOG2139|consen  172 TLNA-------N------------------------------------------------RNIRMMSTHH----------  186 (445)
T ss_pred             cccc-------c------------------------------------------------cccccccccc----------
Confidence            1000       0                                                0000000000          


Q ss_pred             CCceeeecccCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecc
Q 010816          351 QPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS  429 (500)
Q Consensus       351 ~~~~~~~~h~~~v~~l~~sp~g~~lasgs~-Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  429 (500)
                      .....-.+| ..|+++.|.+||..+++++. |..|.|||+.++..+....-..+                          
T Consensus       187 ~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg--------------------------  239 (445)
T KOG2139|consen  187 LQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG--------------------------  239 (445)
T ss_pred             hhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC--------------------------
Confidence            011122345 57999999999999999887 57899999999876543211112                          


Q ss_pred             ccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEE-EEeCCCcE
Q 010816          430 CCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA-SGGKDRVL  495 (500)
Q Consensus       430 ~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~-s~~~D~~v  495 (500)
                       .++.+.|||||.+|.++.-|+..++|+...........-..+.|....|+|+|++|. +++..-++
T Consensus       240 -g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l  305 (445)
T KOG2139|consen  240 -GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL  305 (445)
T ss_pred             -ceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceE
Confidence             223447899999999999999999996543322233333345899999999999864 45554443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.42  E-value=1e-10  Score=101.19  Aligned_cols=224  Identities=13%  Similarity=0.208  Sum_probs=139.4

Q ss_pred             CCCceEEEEeCCCcEEEEECCCCeEEEEecCcc--ccEEEEEeCCCCeEEEEeCC------CeEEEEeCCCCeeEEEeec
Q 010816          208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHT--LAVTCVKWGGDGVIYTGSQD------CTIKVWETTQGKLIRELKG  279 (500)
Q Consensus       208 ~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~l~t~~~d------g~i~lwd~~~~~~~~~~~~  279 (500)
                      ++..-|+.| .|.-.|||+....+......-+.  -.+.-+-|..+-..+.||.+      +.+-|||-...+++.++..
T Consensus        15 QD~ScFava-~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f   93 (346)
T KOG2111|consen   15 QDHSCFAVA-TDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSF   93 (346)
T ss_pred             cCCceEEEE-ecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEe
Confidence            344445554 45558999986533221111111  12222223333233445444      5799999666666666543


Q ss_pred             CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee--e
Q 010816          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--T  357 (500)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~--~  357 (500)
                       ..+|.++.+.++                                      +++.. ..+.|++|...........+  .
T Consensus        94 -~~~I~~V~l~r~--------------------------------------riVvv-l~~~I~VytF~~n~k~l~~~et~  133 (346)
T KOG2111|consen   94 -NSEIKAVKLRRD--------------------------------------RIVVV-LENKIYVYTFPDNPKLLHVIETR  133 (346)
T ss_pred             -ccceeeEEEcCC--------------------------------------eEEEE-ecCeEEEEEcCCChhheeeeecc
Confidence             345666666543                                      33332 34578888654222111111  1


Q ss_pred             cccCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCce--EEEEeCCcccEEEEEeeeeeeecCCCCceeeeecccccee
Q 010816          358 GHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL  434 (500)
Q Consensus       358 ~h~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (500)
                      ..+...-+++-+.+..+||.=| .-|.|+|-|+...+.  .....+|.+.|.++                          
T Consensus       134 ~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv--------------------------  187 (346)
T KOG2111|consen  134 SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACV--------------------------  187 (346)
T ss_pred             cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEE--------------------------
Confidence            1223333333333445555433 458899999876554  46778999998887                          


Q ss_pred             eEEcCCCCEEEEEECCCc-EEEEECCCccccccccCc--ccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          435 YSWSADSRLLLSGSKDST-LKVWDIRTQKLKQDLPGH--ADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       435 ~~~s~~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~h--~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                       +.+-+|.++|++|..|+ |||||..+++++..++-.  ...|++++|||+..+||.+|+-|+|+|+.
T Consensus       188 -~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~  254 (346)
T KOG2111|consen  188 -ALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS  254 (346)
T ss_pred             -EEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence             44779999999999986 799999999988776532  34799999999999999999999999974

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1.1e-10  Score=113.55  Aligned_cols=161  Identities=19%  Similarity=0.242  Sum_probs=99.4

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEe---CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEE-eCCC--eEE
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGS---GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAG--ELQ  175 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~---~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-~~d~--~i~  175 (500)
                      ..+..+.+.+.+.+|+|||+.||..+   .+..+.+|++.+++... +....+.+..+.|+|||+.|+.. +.++  .|.
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence            34455667899999999999998654   34579999998775432 22233335568999999988754 4454  588


Q ss_pred             EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCC-CcEEEE--ECCCCeEEEEecCccccEEEEEeCCCC
Q 010816          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-GDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDG  252 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-g~v~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~  252 (500)
                      +||+.+++...  +..+...+....|+|     +++.++..+.+ +..+||  |+..+... .+..+.....+..|++||
T Consensus       271 ~~d~~tg~~~~--lt~~~~~~~~~~wSP-----DG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG  342 (429)
T PRK03629        271 VMDLASGQIRQ--VTDGRSNNTEPTWFP-----DSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDG  342 (429)
T ss_pred             EEECCCCCEEE--ccCCCCCcCceEECC-----CCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCC
Confidence            89998876432  233334566778876     45567666543 444555  66555432 222233344567788887


Q ss_pred             e-EEEEeC-C--CeEEEEeCCCC
Q 010816          253 V-IYTGSQ-D--CTIKVWETTQG  271 (500)
Q Consensus       253 ~-l~t~~~-d--g~i~lwd~~~~  271 (500)
                      . |+..+. +  ..|.+||+.++
T Consensus       343 ~~Ia~~~~~~g~~~I~~~dl~~g  365 (429)
T PRK03629        343 KFMVMVSSNGGQQHIAKQDLATG  365 (429)
T ss_pred             CEEEEEEccCCCceEEEEECCCC
Confidence            3 444333 2  24566666544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.41  E-value=8.4e-11  Score=118.54  Aligned_cols=145  Identities=13%  Similarity=0.237  Sum_probs=94.9

Q ss_pred             EEEEeeCCCeEEEEcCCCCCCCce-eeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC-CcccEEEE
Q 010816          331 RLVSGSDDFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQI  408 (500)
Q Consensus       331 ~~~s~s~d~~v~~wd~~~~~~~~~-~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-h~~~v~~~  408 (500)
                      .++.+..-+.+..||++....... +.....+.|++++.+|.+.+++.|...|.+-+||++=+..+..+.- +..++..+
T Consensus      1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHV 1244 (1431)
T ss_pred             eEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceE
Confidence            567778888999999875433221 1122346799999999999999999999999999988777765542 34555544


Q ss_pred             EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE--CCCcEEEEECCCccccccccCc----------------
Q 010816          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIRTQKLKQDLPGH----------------  470 (500)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~h----------------  470 (500)
                      ...                        .+.|.....++++  ..+.|-+|++.++.....+...                
T Consensus      1245 ~~~------------------------~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~ 1300 (1431)
T KOG1240|consen 1245 WLC------------------------PTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDAR 1300 (1431)
T ss_pred             Eee------------------------ccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCC
Confidence            321                        1123334444444  4678999999887543332211                


Q ss_pred             ---ccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          471 ---ADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       471 ---~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                         .-......+-.-+..+.+||.|..||.|+
T Consensus      1301 kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1301 KPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred             CCCcccceeeecccCCceeeecCCccceeecc
Confidence               11112233333456889999999999997

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.38  E-value=1.7e-12  Score=117.41  Aligned_cols=223  Identities=16%  Similarity=0.204  Sum_probs=163.4

Q ss_pred             CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEE
Q 010816          207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNS  286 (500)
Q Consensus       207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~  286 (500)
                      ..+++.++.|+..|.+-.+|..+++....+.- ...|.++.|-.+..+++..+..-+.+||- .|..+.-++.+. .|..
T Consensus       138 trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~-~v~r  214 (545)
T KOG1272|consen  138 TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHI-RVAR  214 (545)
T ss_pred             cCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcC-chhh
Confidence            34677899999999999999999887766542 44677888877777777888889999994 455555554432 2333


Q ss_pred             EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEE
Q 010816          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV  366 (500)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l  366 (500)
                      +.|-|-                                    --.|++++..|.++.-|+..++. ...+....+.+..+
T Consensus       215 LeFLPy------------------------------------HfLL~~~~~~G~L~Y~DVS~Gkl-Va~~~t~~G~~~vm  257 (545)
T KOG1272|consen  215 LEFLPY------------------------------------HFLLVAASEAGFLKYQDVSTGKL-VASIRTGAGRTDVM  257 (545)
T ss_pred             hcccch------------------------------------hheeeecccCCceEEEeechhhh-hHHHHccCCccchh
Confidence            333221                                    12477888899999888766543 23333334567778


Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816          367 YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS  446 (500)
Q Consensus       367 ~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  446 (500)
                      +-+|-...+-+|...|+|.+|.....+.+..+-.|.++|.++                           ++.++|+++|+
T Consensus       258 ~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si---------------------------Av~~~G~YMaT  310 (545)
T KOG1272|consen  258 KQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI---------------------------AVDRGGRYMAT  310 (545)
T ss_pred             hcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE---------------------------EECCCCcEEee
Confidence            888988889999999999999999988887777899999888                           55899999999


Q ss_pred             EECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       447 ~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ++.|..|+|||++.-..+.+... .-....+++|..|  |..+|....|.||.
T Consensus       311 tG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  311 TGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             cccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence            99999999999998664433322 1245677888654  45555555688885

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=9.2e-11  Score=114.30  Aligned_cols=206  Identities=17%  Similarity=0.124  Sum_probs=125.2

Q ss_pred             CcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCC---CeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (500)
Q Consensus       220 g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~d---g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (500)
                      ..+.++|.. +.....+..+...+.+..|+||+. |+..+.+   ..|.+||+.+++.... ...........++|+   
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPD---  250 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPD---  250 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC---
Confidence            457777764 333334446677888999999984 5544432   4599999988865432 222223345556654   


Q ss_pred             eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCE
Q 010816          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW  374 (500)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~  374 (500)
                                                       +..+ ++.+.++...+|...........+..+........|+|||+.
T Consensus       251 ---------------------------------G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~  297 (427)
T PRK02889        251 ---------------------------------GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRS  297 (427)
T ss_pred             ---------------------------------CCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCE
Confidence                                             2334 356667776666543222233445555555677899999998


Q ss_pred             EEEEeC-CCcEEEEeC--CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC
Q 010816          375 VASASF-DKSIKLWNG--TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS  451 (500)
Q Consensus       375 lasgs~-Dg~i~lwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~  451 (500)
                      |+..+. +|...+|.+  .+++..... .+...                           ....+|||+|++|+..+.++
T Consensus       298 l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~---------------------------~~~~~~SpDG~~Ia~~s~~~  349 (427)
T PRK02889        298 IYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSY---------------------------NTSPRISPDGKLLAYISRVG  349 (427)
T ss_pred             EEEEecCCCCcEEEEEECCCCceEEEe-cCCCC---------------------------cCceEECCCCCEEEEEEccC
Confidence            886654 456666643  344321111 00000                           01126899999999877654


Q ss_pred             ---cEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816          452 ---TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR  493 (500)
Q Consensus       452 ---~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~  493 (500)
                         .|.+||+.+++......+  .......|+|||+.|+.++.++
T Consensus       350 g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        350 GAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecC
Confidence               699999988765433222  2335789999999998877554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.38  E-value=8.2e-10  Score=101.57  Aligned_cols=304  Identities=20%  Similarity=0.301  Sum_probs=188.6

Q ss_pred             ccEEEEEEcCCCCeEEEEeC---------------CCcEEEEeCCCCceeEEecCCCCC--EE-EEEEcCCCCEEEEEeC
Q 010816          109 EAVLSVAFSPDGRQLASGSG---------------DTTVRLWDLNTQTPMFKCTGHKNW--VL-CIAWSADGKHLVSGSK  170 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~---------------d~~i~iwd~~~~~~~~~~~~h~~~--v~-~v~~s~~~~~l~s~~~  170 (500)
                      ..|..+.|+|.+++|.|=+.               ++.+.+||+.++..+..+.+...+  .. -+.|+-+.+++|=. .
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v  150 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V  150 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence            45888999999999998643               235999999999988887766655  44 67888888777654 3


Q ss_pred             CCeEEEEeCCCCCcccccccCcc-cceEEEEeeeeecCCCCceEE-----EEeCCCcEEEEECCCCeEEEEecCccccEE
Q 010816          171 AGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFV-----SASKDGDARIWDVSLRKCVICLSGHTLAVT  244 (500)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~-----s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~  244 (500)
                      ...+.++++ ++.....++..-. ..+....|+|....   ..|+     ..+.++.+++|.+..++.+.+-.--...-.
T Consensus       151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~---~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~  226 (561)
T COG5354         151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNH---DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV  226 (561)
T ss_pred             cCeEEEEec-CCccccCchhhccccceeeEEecCCCCC---ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence            457899987 5443332222222 45666777776422   2233     257788999999986655443211111222


Q ss_pred             EEEeCCCCe-E-E---EEe-------CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816          245 CVKWGGDGV-I-Y---TGS-------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (500)
Q Consensus       245 ~~~~~~~~~-l-~---t~~-------~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (500)
                      .+.|.+.|. | +   +-.       ....+.|++++. +.+........+|...++.|...                  
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~------------------  287 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSS------------------  287 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccCC------------------
Confidence            355655441 1 1   111       124567777653 33333334566788887766420                  


Q ss_pred             HHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC---CcEEEEeC
Q 010816          313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNG  389 (500)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D---g~i~lwd~  389 (500)
                                      .--+++|-.+-.+.++|++..    ......+..-+.+.|||.+++++.++.|   |.|-+||.
T Consensus       288 ----------------~F~vi~g~~pa~~s~~~lr~N----l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~  347 (561)
T COG5354         288 ----------------RFAVISGYMPASVSVFDLRGN----LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP  347 (561)
T ss_pred             ----------------ceeEEecccccceeecccccc----eEEecCCcccccccccCcccEEEEecCCccccceEEecc
Confidence                            112445566777777776532    1222333445678899999999998887   57999997


Q ss_pred             CCCceEE-EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE------CCCcEEEEECCCcc
Q 010816          390 TTGKFVA-VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS------KDSTLKVWDIRTQK  462 (500)
Q Consensus       390 ~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s------~d~~v~iwd~~~~~  462 (500)
                      .....+. .+.+...                             +...|+||++++.+.-      .|..|+|||+...+
T Consensus       348 ~~rf~~~~~~~~~n~-----------------------------s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         348 AGRFKVAGAFNGLNT-----------------------------SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             CCceEEEEEeecCCc-----------------------------eEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            6543322 3332211                             1125899999988764      37889999986544


Q ss_pred             ccccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816          463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDR  493 (500)
Q Consensus       463 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~  493 (500)
                      ..        +.+.+.|.|.|++.-+.+.+.
T Consensus       399 ~f--------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         399 VF--------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             hh--------hhhhccccCCcccceeeccCC
Confidence            32        456778888887766665554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=4.2e-10  Score=110.27  Aligned_cols=203  Identities=15%  Similarity=0.109  Sum_probs=127.9

Q ss_pred             CcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEe---CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS---QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (500)
Q Consensus       220 g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~---~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (500)
                      ..|.++|..... ...+..|...+.+..|++||. |+..+   .+..|.+||+.+++.. .+......+....++|+.  
T Consensus       182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG--  257 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDG--  257 (435)
T ss_pred             eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCC--
Confidence            378888875443 344556778899999999984 55444   3468999999887653 233333344455555542  


Q ss_pred             eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCCe--EEEEcCCCCCCCceeeecccCcEEEEEECCCC
Q 010816          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG  372 (500)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~~--v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g  372 (500)
                                                        ..+ ++.+.++.  |++||+...  ....+..+........|+|||
T Consensus       258 ----------------------------------~~la~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG  301 (435)
T PRK05137        258 ----------------------------------RKVVMSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDG  301 (435)
T ss_pred             ----------------------------------CEEEEEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCC
Confidence                                              233 45555554  666776543  234455666667788999999


Q ss_pred             CEEEEEeC-CC--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816          373 QWVASASF-DK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (500)
Q Consensus       373 ~~lasgs~-Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~  449 (500)
                      +.|+..+. +|  .|++||+.+++...... +.+..                           ....|+|+|+.|+..+.
T Consensus       302 ~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~-~~~~~---------------------------~~~~~SpdG~~ia~~~~  353 (435)
T PRK05137        302 SQIVFESDRSGSPQLYVMNADGSNPRRISF-GGGRY---------------------------STPVWSPRGDLIAFTKQ  353 (435)
T ss_pred             CEEEEEECCCCCCeEEEEECCCCCeEEeec-CCCcc---------------------------cCeEECCCCCEEEEEEc
Confidence            99887764 33  58888876655432221 11111                           11268999999988765


Q ss_pred             C---CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          450 D---STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       450 d---~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      +   ..|.+||+.++.. ..+.. ...+....|+|||+.|+..+.+
T Consensus       354 ~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        354 GGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             CCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEcc
Confidence            4   3688888765543 22221 2245678999999998776543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.35  E-value=2.1e-10  Score=98.28  Aligned_cols=152  Identities=28%  Similarity=0.439  Sum_probs=103.3

Q ss_pred             EEEEcCCCCeEEEEeC----------CCcEEEEeCCC-CceeEEec-CCCCCEEEEEEcCCCCEEEE--EeCCCeEEEEe
Q 010816          113 SVAFSPDGRQLASGSG----------DTTVRLWDLNT-QTPMFKCT-GHKNWVLCIAWSADGKHLVS--GSKAGELQCWD  178 (500)
Q Consensus       113 ~~~~sp~~~~lat~~~----------d~~i~iwd~~~-~~~~~~~~-~h~~~v~~v~~s~~~~~l~s--~~~d~~i~~wd  178 (500)
                      .+.|+|+|++|+.-..          -+...||.++. +.+...+. ...++|.+++|+|+|+.+|.  |..++.|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            5789999987764322          23455665532 22333332 23457999999999998765  44678999999


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeC---CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK---DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I  254 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~---dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l  254 (500)
                      ++ ++...   .-+...++.+.|+|.     ++.+++++.   .|.+.+||.++.+.+.....  ..++.++|+|+|. +
T Consensus        90 ~~-~~~i~---~~~~~~~n~i~wsP~-----G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~  158 (194)
T PF08662_consen   90 VK-GKKIF---SFGTQPRNTISWSPD-----GRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYL  158 (194)
T ss_pred             Cc-ccEeE---eecCCCceEEEECCC-----CCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEE
Confidence            96 33322   223456778999884     457777764   46799999998888776543  3478999999984 5


Q ss_pred             EEEe------CCCeEEEEeCCCCeeEEE
Q 010816          255 YTGS------QDCTIKVWETTQGKLIRE  276 (500)
Q Consensus       255 ~t~~------~dg~i~lwd~~~~~~~~~  276 (500)
                      ++++      .|+.++||+. +|+.+..
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~-~G~~l~~  185 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSF-QGRLLYK  185 (194)
T ss_pred             EEEEeccceeccccEEEEEe-cCeEeEe
Confidence            5544      3789999997 4665543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.30  E-value=2.6e-09  Score=93.00  Aligned_cols=328  Identities=19%  Similarity=0.316  Sum_probs=179.0

Q ss_pred             ccEEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCccc
Q 010816          109 EAVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSG  186 (500)
Q Consensus       109 ~~V~~~~~sp~~~~la-t~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~  186 (500)
                      +.|.-+.|..|..++. ....|+.|.+|++...+-...+.....++.+++|||||+.+ .+...|-.|.+|.+.+.+...
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            5677788888876654 45688999999998776666666677889999999999654 566779999999998765432


Q ss_pred             ccccCcccceEEEEeeeeec------CCCCceE---------------------EEE---e-CCCcEEEEECCCCeEEEE
Q 010816          187 NPLSGHKKWITGISWEPVHL------NAPCRRF---------------------VSA---S-KDGDARIWDVSLRKCVIC  235 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~------~~~~~~~---------------------~s~---s-~dg~v~iwd~~~~~~~~~  235 (500)
                        +.-.+..+.+++|+|...      ..+|..+                     .+|   + .+..+.+||--..-.+..
T Consensus       129 --~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a  206 (447)
T KOG4497|consen  129 --LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA  206 (447)
T ss_pred             --ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence              222233445666655210      0011100                     011   1 223456676433222211


Q ss_pred             ecCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816          236 LSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (500)
Q Consensus       236 ~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (500)
                      . .-...+..++|+| +..|+.|+.|+.+|+-+--+=+....+- |-..+..-...   .+.              .+.-
T Consensus       207 Y-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~---~~~--------------ke~~  267 (447)
T KOG4497|consen  207 Y-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLH---LLE--------------KETF  267 (447)
T ss_pred             e-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhh---hhh--------------hhhc
Confidence            1 1124577788998 4467789999999886533222211110 11001000000   000              0000


Q ss_pred             HHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC-------CC------CCCceeeecccCcEEEEEECCCCCEEEEEeC-
Q 010816          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPA-------VS------KQPKTRMTGHQQLVNHVYFSPDGQWVASASF-  380 (500)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~-------~~------~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~-  380 (500)
                      .........+...+.+        -...+|...       ..      ..+..........+.-++||+|..++|+-.. 
T Consensus       268 ~~~ql~~~cLsf~p~~--------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~  339 (447)
T KOG4497|consen  268 SIVQLLHHCLSFTPTD--------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK  339 (447)
T ss_pred             chhhhcccccccCCCc--------cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCC
Confidence            0000000000000000        000111100       00      0011111122345778999999999998643 


Q ss_pred             -CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          381 -DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       381 -Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                       -+.+.+||++..++..++.. ..+|.                           ...|.|....|+.......+++|...
T Consensus       340 ~PnalW~Wdlq~l~l~avLiQ-k~pir---------------------------af~WdP~~prL~vctg~srLY~W~ps  391 (447)
T KOG4497|consen  340 YPNALWLWDLQNLKLHAVLIQ-KHPIR---------------------------AFEWDPGRPRLVVCTGKSRLYFWAPS  391 (447)
T ss_pred             CCceEEEEechhhhhhhhhhh-cccee---------------------------EEEeCCCCceEEEEcCCceEEEEcCC
Confidence             36799999987765433321 12222                           22578888777777666779999877


Q ss_pred             CccccccccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816          460 TQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV  494 (500)
Q Consensus       460 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~  494 (500)
                      ....+..- +..=.|..+.|.-+|..|+-.|.|.-
T Consensus       392 g~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  392 GPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             CceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence            65554432 22235889999999999999999863

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.30  E-value=5.7e-10  Score=97.62  Aligned_cols=248  Identities=17%  Similarity=0.267  Sum_probs=166.4

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE-Ee-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-KC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~-~~-~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w  177 (500)
                      +...+.||.+.|.+...-|-..-+++.+.|.++|||--.+..+.. .+ ..-..+++++.+.++...|+.|-..|++.-+
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            345578999999999999999999999999999999533221111 11 1224678999999999999999999998887


Q ss_pred             eCCCC---CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccc--cEEEEEeCCCC
Q 010816          178 DPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL--AVTCVKWGGDG  252 (500)
Q Consensus       178 d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~  252 (500)
                      .+..-   .........|...+..+-|.-     ....+++.+.|..+.---.+.+..+   .++.-  .-+++.+.-. 
T Consensus        96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-----~~e~V~s~~~dk~~~~hc~e~~~~l---g~Y~~~~~~t~~~~d~~-  166 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-----THEWVLSTGKDKQFAWHCTESGNRL---GGYNFETPASALQFDAL-  166 (404)
T ss_pred             EhhhhhhhcchhhhhhhhhcceeeEEecC-----CceeEEEeccccceEEEeeccCCcc---cceEeeccCCCCceeeE-
Confidence            65321   111223456777887776643     3356777787765532222222111   01100  0001111101 


Q ss_pred             eEEEEeCCCeEEEEeC--CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816          253 VIYTGSQDCTIKVWET--TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (500)
Q Consensus       253 ~l~t~~~dg~i~lwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (500)
                      ..+.|...|.|..-.+  ..-..+..+.+|...+.++.+.+.                                    ..
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~------------------------------------~~  210 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG------------------------------------QR  210 (404)
T ss_pred             EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC------------------------------------Cc
Confidence            2334444444433322  233456777888888888887653                                    35


Q ss_pred             EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (500)
Q Consensus       331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~  392 (500)
                      .+.+|+.|..+.+||+-........+.+|.+.|..+..-+-.+.|.+++.||.|-+|+.+-.
T Consensus       211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            78999999999999998777778888999999999999888899999999999999997643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.29  E-value=3.5e-10  Score=105.96  Aligned_cols=202  Identities=21%  Similarity=0.288  Sum_probs=142.8

Q ss_pred             eEEEEeCCCeEEEEeCCCCeeEEEeecCCc---eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGH---WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (500)
Q Consensus       253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (500)
                      +++....||.+|+||...++..+.+....+   ...+..+.    +..   +.      +  ..+....... ..+....
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~----L~~---~~------s--~~k~~~~~~~-~~~s~~t   70 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG----LSA---DY------S--PMKWLSLEKA-KKASLDT   70 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE----EEe---cc------c--hHHHHhHHHH-hhccCCc
Confidence            677888999999999999988777653221   11111111    000   00      0  1111111111 1122334


Q ss_pred             cEEEEeeCCCeEEEEcCCCCCCCceee-ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816          330 ERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (500)
Q Consensus       330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~  408 (500)
                      ..++-|...|.|.+++....+...... ..|.+.|+++.++.+-..|.+++.|..+..|+..+++.++.+++....+.++
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl  150 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL  150 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence            567888899999999976544322222 4789999999999999999999999999999999999998888766555444


Q ss_pred             EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCC-----C
Q 010816          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD-----G  483 (500)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d-----g  483 (500)
                                                 ..+|||..|++|+.  .|++||+++++.+..++||.+.|.+++|..+     |
T Consensus       151 ---------------------------~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G  201 (541)
T KOG4547|consen  151 ---------------------------CISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIG  201 (541)
T ss_pred             ---------------------------EEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEecccccc
Confidence                                       45899999999884  6999999999999999999999999999877     5


Q ss_pred             CEEE-EEeCCCcEEEec
Q 010816          484 EKVA-SGGKDRVLKLWM  499 (500)
Q Consensus       484 ~~l~-s~~~D~~v~iW~  499 (500)
                      +++. +...+.-+-+|.
T Consensus       202 ~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  202 KYVLSSAAAERGITVWV  218 (541)
T ss_pred             ceeeeccccccceeEEE
Confidence            6554 445566666663

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.28  E-value=3.9e-11  Score=124.98  Aligned_cols=246  Identities=16%  Similarity=0.243  Sum_probs=153.1

Q ss_pred             eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816          127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (500)
Q Consensus       127 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (500)
                      ..++...-|..+....+  .+.+-..|.++.=+|...+-+||+.||.++.|....+..+...-.+....|+.+.|+.   
T Consensus      2187 n~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~--- 2261 (2439)
T KOG1064|consen 2187 NLPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH--- 2261 (2439)
T ss_pred             cCCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc---
Confidence            33444444444332222  2334566888888888889999999999999998766544332222235555555433   


Q ss_pred             CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEE
Q 010816          207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNS  286 (500)
Q Consensus       207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~  286 (500)
                        .++.+..+..||.+-+|.+. .+.....+-|+...+...|-. ..+++++                            
T Consensus      2262 --qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag---------------------------- 2309 (2439)
T KOG1064|consen 2262 --QGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAG---------------------------- 2309 (2439)
T ss_pred             --cCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccc----------------------------
Confidence              34566667777777777665 222333333444433333322 1122211                            


Q ss_pred             EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEE
Q 010816          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV  366 (500)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l  366 (500)
                                                                     ..+.++.+.+||..........-..|...++++
T Consensus      2310 -----------------------------------------------~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2310 -----------------------------------------------RSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVL 2342 (2439)
T ss_pred             -----------------------------------------------cCCCCCcccchhcccCcccceeeeecCCCceEE
Confidence                                                           023455666666433322222337899999999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816          367 YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS  446 (500)
Q Consensus       367 ~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  446 (500)
                      ++-|..++|++|+.+|.|++||++..++..+++.                                    +. ...++++
T Consensus      2343 ~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------------------------------------~~-~~~~f~~ 2385 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------------------------------------LD-TREYFVT 2385 (2439)
T ss_pred             EEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------------------------------------hh-hhheeec
Confidence            9999999999999999999999988776655442                                    23 4568999


Q ss_pred             EECCCcEEEEECCCccccccccC-c--cc--CE--EEEEEcCCCCEEEEEeCCCc
Q 010816          447 GSKDSTLKVWDIRTQKLKQDLPG-H--AD--EV--FAVDWSPDGEKVASGGKDRV  494 (500)
Q Consensus       447 ~s~d~~v~iwd~~~~~~~~~~~~-h--~~--~V--~~l~~s~dg~~l~s~~~D~~  494 (500)
                      |+..|.++||++....++..++. |  .+  ++  ..+... ...+|.+||.|++
T Consensus      2386 ~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2386 GSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred             cCcccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence            99999999999988777766654 2  11  01  122222 3568999999974

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=9.7e-10  Score=107.55  Aligned_cols=203  Identities=16%  Similarity=0.135  Sum_probs=125.2

Q ss_pred             CcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeC---CCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQ---DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (500)
Q Consensus       220 g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~---dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (500)
                      ..|++||.... ....+..+...+.+..|++|+. |+..+.   +..|.+||+.+++... +.........+.++|+   
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpD---  258 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPD---  258 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCC---
Confidence            36888998543 3334555667788999999984 555553   3469999998776432 2222222234445443   


Q ss_pred             eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCC--eEEEEcCCCCCCCceeeecccCcEEEEEECCCC
Q 010816          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG  372 (500)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~--~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g  372 (500)
                                                       +..+ ++.+.++  .|++||+....  ...+..+.......+|+|||
T Consensus       259 ---------------------------------G~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG  303 (433)
T PRK04922        259 ---------------------------------GRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDG  303 (433)
T ss_pred             ---------------------------------CCEEEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCC
Confidence                                             2233 3444444  58889876433  33445555556678999999


Q ss_pred             CEEEEEeC-CCc--EEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816          373 QWVASASF-DKS--IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (500)
Q Consensus       373 ~~lasgs~-Dg~--i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~  449 (500)
                      +.|+.++. +|.  |+++|+.+++..... .+...                           ....+|+|+|++++..+.
T Consensus       304 ~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~---------------------------~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        304 KSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNY---------------------------NARASVSPDGKKIAMVHG  355 (433)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCeEEee-cCCCC---------------------------ccCEEECCCCCEEEEEEC
Confidence            98887764 444  666677666532211 11100                           011378999999987764


Q ss_pred             CC---cEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          450 DS---TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       450 d~---~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      ++   .|.+||+.+++.. .+. +........|+|||++|+..+.+
T Consensus       356 ~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        356 SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             CCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec
Confidence            43   6999999887654 332 22234567999999998876654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=7e-09  Score=96.51  Aligned_cols=319  Identities=17%  Similarity=0.205  Sum_probs=172.0

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC-----------CCeEEEEeCC
Q 010816          112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-----------AGELQCWDPQ  180 (500)
Q Consensus       112 ~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-----------d~~i~~wd~~  180 (500)
                      +-+.|||-|.+|+|--.- .|.+|--++-..+..+ .|. .|.-+.|||+.++|+|=+.           -..++|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEecc-ceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            468999999999997554 4889965544333333 244 4889999999999998542           1579999999


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEE---
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG---  257 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~---  257 (500)
                      +|..... +..-..  ..+.|.-+.-+.+...++-... .+|.||+......+-.-.-.-..|....|+|.+.+++=   
T Consensus       291 tG~lkrs-F~~~~~--~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp  366 (698)
T KOG2314|consen  291 TGLLKRS-FPVIKS--PYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP  366 (698)
T ss_pred             ccchhcc-eeccCC--CccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence            9975432 111111  1112222222234445544443 67889987654332211112345667778887544321   


Q ss_pred             eCC---CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816          258 SQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (500)
Q Consensus       258 ~~d---g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (500)
                      ..+   ..+.+-.+.+++.+++..-+...-..+.+-..+...+...+...                       ...   .
T Consensus       367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~t-----------------------K~~---~  420 (698)
T KOG2314|consen  367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHT-----------------------KSK---V  420 (698)
T ss_pred             cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeec-----------------------ccc---c
Confidence            111   23444455554444433222111111111111111000000000                       000   1


Q ss_pred             eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCC-C---ceEEEEeCCcccEEE
Q 010816          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTT-G---KFVAVFRGHVGPVYQ  407 (500)
Q Consensus       335 ~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D---g~i~lwd~~~-~---~~~~~~~~h~~~v~~  407 (500)
                      .+.--.+-|+.++....+.... .-...|...+|-|.|..+++-+..   .++.+|.+++ +   +++..+..       
T Consensus       421 ~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-------  492 (698)
T KOG2314|consen  421 KGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-------  492 (698)
T ss_pred             cceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-------
Confidence            1112245566665544444332 345678899999999888765442   4677776653 1   11111110       


Q ss_pred             EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE---CCCcEEEEECCCcccccc-ccCcccCEEEEEEcCCC
Q 010816          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS---KDSTLKVWDIRTQKLKQD-LPGHADEVFAVDWSPDG  483 (500)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s---~d~~v~iwd~~~~~~~~~-~~~h~~~V~~l~~s~dg  483 (500)
                                            .....+.|+|.|++++.+.   ..|.+.++|+.-..+... .+.|. .-+.+.|.|.|
T Consensus       493 ----------------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtG  549 (698)
T KOG2314|consen  493 ----------------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTG  549 (698)
T ss_pred             ----------------------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCC
Confidence                                  1112236899999998764   568899999874333222 23353 34678999999


Q ss_pred             CEEEEEeCCCc
Q 010816          484 EKVASGGKDRV  494 (500)
Q Consensus       484 ~~l~s~~~D~~  494 (500)
                      +++++++.-.+
T Consensus       550 RYvvT~ss~wr  560 (698)
T KOG2314|consen  550 RYVVTSSSSWR  560 (698)
T ss_pred             CEEEEeeehhh
Confidence            99999987543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.26  E-value=5.7e-10  Score=97.57  Aligned_cols=283  Identities=19%  Similarity=0.355  Sum_probs=167.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc----ccccccCcc------------cceEEEEeeeeecCCCCceE
Q 010816          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----SGNPLSGHK------------KWITGISWEPVHLNAPCRRF  213 (500)
Q Consensus       150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~  213 (500)
                      ..-|.+|.|..+|.+||+|..+|.|.++.-.....    ....+..|.            ..|..+.|.+..   ....|
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~---n~a~F  101 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG---NLAEF  101 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC---CccEE
Confidence            35688999999999999999999999996543221    111222332            356777887643   23478


Q ss_pred             EEEeCCCcEEEEECCCCeEEEE-----ecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEe-ecCCceEEEE
Q 010816          214 VSASKDGDARIWDVSLRKCVIC-----LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSL  287 (500)
Q Consensus       214 ~s~s~dg~v~iwd~~~~~~~~~-----~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~-~~~~~~v~~~  287 (500)
                      +....|.+|++|.+........     ..+....++++..     .+.+..|-.+..      .+.+.+ ..|.--|.++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~-----p~~~~~~~~vea------~prRv~aNaHtyhiNSI  170 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL-----PVEGRHDLEVEA------SPRRVYANAHTYHINSI  170 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeec-----eeeccccceeee------eeeeeccccceeEeeee
Confidence            8899999999999865432110     0011111222111     111111111100      111111 2345556666


Q ss_pred             EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce-------eeeccc
Q 010816          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT-------RMTGHQ  360 (500)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~-------~~~~h~  360 (500)
                      .+..+.                                    + ...+++|=.|.+|.+....+...       .+..-.
T Consensus       171 S~NsD~------------------------------------E-t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLt  213 (433)
T KOG1354|consen  171 SVNSDK------------------------------------E-TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELT  213 (433)
T ss_pred             eecCcc------------------------------------c-eEeeccceeeeeccccccCCceeEEEccccCHHHHH
Confidence            655432                                    2 34456778899998765433211       222234


Q ss_pred             CcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEE----EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceee
Q 010816          361 QLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVA----VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLY  435 (500)
Q Consensus       361 ~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (500)
                      ..|++..|+|. .++++-++.-|+|++-|++...+..    .+.....+               .+..-....-.+++.+
T Consensus       214 eVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp---------------~~rsffseiIsSISDv  278 (433)
T KOG1354|consen  214 EVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP---------------SSRSFFSEIISSISDV  278 (433)
T ss_pred             HHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC---------------cchhhHHHHhhhhhce
Confidence            56888999995 5788888999999999998644321    11111111               1111111222345667


Q ss_pred             EEcCCCCEEEEEECCCcEEEEECCC-ccccccccCc------------ccCE---EEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          436 SWSADSRLLLSGSKDSTLKVWDIRT-QKLKQDLPGH------------ADEV---FAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       436 ~~s~~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~h------------~~~V---~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      .|+++|+++++-.. -+|++||+.. .+.+...+-|            ++.|   +.++|+.++.++.|||-....+++.
T Consensus       279 KFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  279 KFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             EEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence            79999999987543 4799999843 3444443333            2333   5689999999999999999998875

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.26  E-value=2.5e-09  Score=100.32  Aligned_cols=171  Identities=22%  Similarity=0.359  Sum_probs=126.2

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCCcccc--cccCcccceEEEEee------ee---------ecCCCCceEEEEeCCCcE
Q 010816          160 ADGKHLVSGSKAGELQCWDPQTGKPSGN--PLSGHKKWITGISWE------PV---------HLNAPCRRFVSASKDGDA  222 (500)
Q Consensus       160 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~~v~~~~~~------~~---------~~~~~~~~~~s~s~dg~v  222 (500)
                      |-..++|....||.+++||..+++....  +.....+.-+...|.      |.         ....+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4467899999999999999988764321  222222333444443      10         111233457788899999


Q ss_pred             EEEECCCCeEEEEec--CccccEEEEEeCCC-CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816          223 RIWDVSLRKCVICLS--GHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (500)
Q Consensus       223 ~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (500)
                      .+|++..++....+.  .|...|.++.++.+ +.|++++.|+.+..|+....+.                          
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~--------------------------  136 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI--------------------------  136 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee--------------------------
Confidence            999999888766654  68899999988765 5799999999999998765433                          


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe
Q 010816          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (500)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs  379 (500)
                                                               +++|..            .+..+.+++++|||..|++++
T Consensus       137 -----------------------------------------~~~~~~------------~~~~~~sl~is~D~~~l~~as  163 (541)
T KOG4547|consen  137 -----------------------------------------IRIWKE------------QKPLVSSLCISPDGKILLTAS  163 (541)
T ss_pred             -----------------------------------------eeeecc------------CCCccceEEEcCCCCEEEecc
Confidence                                                     233432            223467889999999999887


Q ss_pred             CCCcEEEEeCCCCceEEEEeCCcccEEEEEee
Q 010816          380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE  411 (500)
Q Consensus       380 ~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  411 (500)
                        +.|++||.++++.+..|.||.++|.++.|.
T Consensus       164 --~~ik~~~~~~kevv~~ftgh~s~v~t~~f~  193 (541)
T KOG4547|consen  164 --RQIKVLDIETKEVVITFTGHGSPVRTLSFT  193 (541)
T ss_pred             --ceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence              579999999999999999999999999874

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=2.9e-10  Score=113.06  Aligned_cols=196  Identities=23%  Similarity=0.339  Sum_probs=146.5

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC----EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----VLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~----v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      .+.|....+.-+.+.++.+..++.+.|||......+......+..    ..-+.++++.-++++|+.-+.|.+|++. ..
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~-~d  165 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH-ED  165 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc-cc
Confidence            445555667778889999999999999999876555444332221    2223456677789999999999999987 32


Q ss_pred             cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE-EecCccccEEEEEeCCCCeEEEEeCCCe
Q 010816          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGSQDCT  262 (500)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~l~t~~~dg~  262 (500)
                      .....+.+|++.+.++.|+     .+++++++.|.|+++|+|++.+++... +.-+|+..|..+.|.++ .+++++.|-+
T Consensus       166 n~p~~l~GHeG~iF~i~~s-----~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedct  239 (967)
T KOG0974|consen  166 NKPIRLKGHEGSIFSIVTS-----LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCT  239 (967)
T ss_pred             CCcceecccCCceEEEEEc-----cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceE
Confidence            2223578999999999875     367899999999999999999887765 56699999999999987 9999999999


Q ss_pred             EEEEeCCCCeeEEEeecCC-ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816          263 IKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (500)
Q Consensus       263 i~lwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v  341 (500)
                      .++|+.. +..+..+.+|. .-+..++.++.                                    .-..++++.|+++
T Consensus       240 crvW~~~-~~~l~~y~~h~g~~iw~~~~~~~------------------------------------~~~~vT~g~Ds~l  282 (967)
T KOG0974|consen  240 CRVWGVN-GTQLEVYDEHSGKGIWKIAVPIG------------------------------------VIIKVTGGNDSTL  282 (967)
T ss_pred             EEEEecc-cceehhhhhhhhcceeEEEEcCC------------------------------------ceEEEeeccCcch
Confidence            9999653 44455555553 34555655543                                    2246788888888


Q ss_pred             EEEcCC
Q 010816          342 FLWEPA  347 (500)
Q Consensus       342 ~~wd~~  347 (500)
                      ++|+..
T Consensus       283 k~~~l~  288 (967)
T KOG0974|consen  283 KLWDLN  288 (967)
T ss_pred             hhhhhh
Confidence            888753

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.24  E-value=1.7e-08  Score=93.11  Aligned_cols=322  Identities=16%  Similarity=0.167  Sum_probs=180.4

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---------------
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---------------  171 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---------------  171 (500)
                      -.-++..+.+||.|.+|++.... .|.+|.-.....+..+. | ..|..+.|+|++++|.+=+..               
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            34578889999999999987544 49999877666444443 3 358999999999999885433               


Q ss_pred             CeEEEEeCCCCCcccccccCcccc--e-EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc---cccEEE
Q 010816          172 GELQCWDPQTGKPSGNPLSGHKKW--I-TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH---TLAVTC  245 (500)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~--v-~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h---~~~v~~  245 (500)
                      ..+.+||..+|..+.. +.+-...  . .-+.|+-.+  .-+.++    ....+.|+++ ++... ...-+   ...|..
T Consensus       108 n~~~vwd~~sg~iv~s-f~~~~q~~~~Wp~~k~s~~D--~y~ARv----v~~sl~i~e~-t~n~~-~~p~~~lr~~gi~d  178 (561)
T COG5354         108 NNVFVWDIASGMIVFS-FNGISQPYLGWPVLKFSIDD--KYVARV----VGSSLYIHEI-TDNIE-EHPFKNLRPVGILD  178 (561)
T ss_pred             CceeEEeccCceeEee-ccccCCcccccceeeeeecc--hhhhhh----ccCeEEEEec-CCccc-cCchhhccccceee
Confidence            3589999998865432 1111111  0 122333211  111223    2346888886 32211 11111   234566


Q ss_pred             EEeCCCC---eEE-----EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcce-eeeccccCCCCCCCCHHHHHHH
Q 010816          246 VKWGGDG---VIY-----TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKA  316 (500)
Q Consensus       246 ~~~~~~~---~l~-----t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  316 (500)
                      ..|+|.+   .|+     ..+.++++++|.+..++.+.+-.--...-..+.+.+.+. +..-...+..            
T Consensus       179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~k------------  246 (561)
T COG5354         179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTK------------  246 (561)
T ss_pred             EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeee------------
Confidence            6677652   222     256778888998876655443211110011111111110 0000000000            


Q ss_pred             HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe--CCCcEEEEeCCCCce
Q 010816          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKF  394 (500)
Q Consensus       317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs--~Dg~i~lwd~~~~~~  394 (500)
                               . +...    -...+++|+++.....+..  .+-.++|...+|.|.++.+++.+  .+..+.++|++.. +
T Consensus       247 ---------s-nKsy----fgesnLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l  309 (561)
T COG5354         247 ---------S-NKSY----FGESNLYLLRITERSIPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L  309 (561)
T ss_pred             ---------c-ccce----eccceEEEEeeccccccee--ccccccceeeeecccCCceeEEecccccceeecccccc-e
Confidence                     0 0000    0123566776653222222  25578899999999887776554  6788889988654 2


Q ss_pred             EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC---CcEEEEECCCccccc-cccCc
Q 010816          395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD---STLKVWDIRTQKLKQ-DLPGH  470 (500)
Q Consensus       395 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d---~~v~iwd~~~~~~~~-~~~~h  470 (500)
                      ...+  ..++-+.                           ..|||.+++++.++.|   |.|-+||....-... .+.+-
T Consensus       310 ~~~~--Pe~~rNT---------------------------~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~  360 (561)
T COG5354         310 RFYF--PEQKRNT---------------------------IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL  360 (561)
T ss_pred             EEec--CCccccc---------------------------ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC
Confidence            2211  1111111                           1479999999998876   679999976644332 44443


Q ss_pred             ccCEEEEEEcCCCCEEEEEeC------CCcEEEecC
Q 010816          471 ADEVFAVDWSPDGEKVASGGK------DRVLKLWMG  500 (500)
Q Consensus       471 ~~~V~~l~~s~dg~~l~s~~~------D~~v~iW~~  500 (500)
                      +  -.-+.|+||++++.+...      |..|+||+.
T Consensus       361 n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v  394 (561)
T COG5354         361 N--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV  394 (561)
T ss_pred             C--ceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence            2  234689999999877643      778999973

>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO)

Probab=99.23  E-value=4.9e-11  Score=80.79  Aligned_cols=62  Identities=34%  Similarity=0.599  Sum_probs=57.5

Q ss_pred             eEEEEEECCCC--CcCCCcEeecCCCCHHHHHHHHHHHh-cCCCCCceeEEecCeeeecchhhhH
Q 010816           10 NVMCLLTDPEG--NPLGAPMYFPQNAGPQQLSQIVNKLL-NNEEKLPYAFYISDHELLVPLGSYL   71 (500)
Q Consensus        10 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~   71 (500)
                      ||+++|.++++  .+++.|+.+|.++.+.+|+.++|+|+ ..+++.||+|++++.+++.+|++++
T Consensus         1 qv~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~lr~sL~~~l   65 (65)
T PF08154_consen    1 QVQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEELRTSLEEHL   65 (65)
T ss_pred             CEEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEEeechHHHhC
Confidence            68999998876  89999999999999999999999999 7888999999999999999998864

It is found in the microtubule-associated protein Q12024 from SWISSPROT [].

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=8.4e-09  Score=96.22  Aligned_cols=295  Identities=19%  Similarity=0.251  Sum_probs=174.1

Q ss_pred             cEEEEEEcCCCCeEEEE-----eCC-----CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          110 AVLSVAFSPDGRQLASG-----SGD-----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~-----~~d-----~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      .+.++.|+|-|.+|.|=     ..+     ..+++|+++++.....+....+.-.+..|+.|..+.| --..+.+++|+.
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~  153 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDL  153 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEec
Confidence            67899999999988753     223     3577999998544433332222225889998865332 223568999998


Q ss_pred             CCCCcccccccCcccceEEEEeeeeecCCCCceEE-----EEeCCCcEEEEECCCCeE-----EEEecCccccEEEEEeC
Q 010816          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV-----SASKDGDARIWDVSLRKC-----VICLSGHTLAVTCVKWG  249 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----s~s~dg~v~iwd~~~~~~-----~~~~~~h~~~v~~~~~~  249 (500)
                      ...+....  .-|...++...++|...   ...++     .+|.-+.|+||.......     .++|..  ..--.+.|+
T Consensus       154 ~~f~~~~~--kl~~~~i~~f~lSpgp~---~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk--adkvqm~WN  226 (566)
T KOG2315|consen  154 GSFKTIQH--KLSVSGITMLSLSPGPE---PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK--ADKVQMKWN  226 (566)
T ss_pred             CCccceee--eeeccceeeEEecCCCC---CceEEEEccCCCCCCcEEEEeccccccccchhhhccccc--cceeEEEec
Confidence            76443322  22455666666666411   11222     246667899998762211     011110  111234565


Q ss_pred             CCC--eEEEEe--CC---------CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816          250 GDG--VIYTGS--QD---------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (500)
Q Consensus       250 ~~~--~l~t~~--~d---------g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (500)
                      .-|  +|+.++  -|         .++++.++. |.....--....+|.++.+++...           .          
T Consensus       227 ~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~-----------E----------  284 (566)
T KOG2315|consen  227 KLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGR-----------E----------  284 (566)
T ss_pred             cCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCC-----------E----------
Confidence            433  333332  22         356666655 222221122356788888876531           0          


Q ss_pred             HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCc
Q 010816          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGK  393 (500)
Q Consensus       317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D---g~i~lwd~~~~~  393 (500)
                                   --++-|-....+.++|++-.  +...  -.++.-+++-|+|.|++|+.++.+   |.+-+||+.+.+
T Consensus       285 -------------F~VvyGfMPAkvtifnlr~~--~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K  347 (566)
T KOG2315|consen  285 -------------FAVVYGFMPAKVTIFNLRGK--PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK  347 (566)
T ss_pred             -------------EEEEEecccceEEEEcCCCC--EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence                         01334555667888886531  2222  224556789999999999998876   789999999887


Q ss_pred             eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC------CCcEEEEECCCccccccc
Q 010816          394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK------DSTLKVWDIRTQKLKQDL  467 (500)
Q Consensus       394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~------d~~v~iwd~~~~~~~~~~  467 (500)
                      ++..++....                             +.+.|+|||++++++..      |+.++||+.....+....
T Consensus       348 ~i~~~~a~~t-----------------------------t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~  398 (566)
T KOG2315|consen  348 LIAKFKAANT-----------------------------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM  398 (566)
T ss_pred             hccccccCCc-----------------------------eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh
Confidence            7766554322                             22379999999999874      788999998654433221


Q ss_pred             cCcccCEEEEEEcCC
Q 010816          468 PGHADEVFAVDWSPD  482 (500)
Q Consensus       468 ~~h~~~V~~l~~s~d  482 (500)
                      -  ..+.+.+.|-|-
T Consensus       399 f--~sEL~qv~W~P~  411 (566)
T KOG2315|consen  399 F--KSELLQVEWRPF  411 (566)
T ss_pred             h--hHhHhheeeeec
Confidence            1  115778888753

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=9.1e-11  Score=108.65  Aligned_cols=214  Identities=22%  Similarity=0.370  Sum_probs=146.3

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-------CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~  175 (500)
                      .+.||+..|..++--.+.+-+++++.|++|++|.++.       ..+.++.+.|+.+|.++.|-.+-++++++  ||.|.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH  807 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH  807 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence            4679999999998878888899999999999998753       34677888999999999999988888776  89999


Q ss_pred             EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEE
Q 010816          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY  255 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~  255 (500)
                      +||+--|+...+.           -|.|.+                                +....|.|+.-.....++
T Consensus       808 lWDPFigr~Laq~-----------~dapk~--------------------------------~a~~~ikcl~nv~~~ili  844 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQM-----------EDAPKE--------------------------------GAGGNIKCLENVDRHILI  844 (1034)
T ss_pred             eecccccchhHhh-----------hcCccc--------------------------------CCCceeEecccCcchhee
Confidence            9998766543221           111110                                001112222211112333


Q ss_pred             E-EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816          256 T-GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (500)
Q Consensus       256 t-~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (500)
                      . ++...+|+++|.+.+....+++.                                                       
T Consensus       845 AgcsaeSTVKl~DaRsce~~~E~kV-------------------------------------------------------  869 (1034)
T KOG4190|consen  845 AGCSAESTVKLFDARSCEWTCELKV-------------------------------------------------------  869 (1034)
T ss_pred             eeccchhhheeeecccccceeeEEe-------------------------------------------------------
Confidence            3 47788999999877654433221                                                       


Q ss_pred             eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeee
Q 010816          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY  414 (500)
Q Consensus       335 ~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~  414 (500)
                                  ...       .+....+++++..+.|+++|.+-..|.|-+.|.++|+.+..++--+-...++      
T Consensus       870 ------------cna-------~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllql------  924 (1034)
T KOG4190|consen  870 ------------CNA-------PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQL------  924 (1034)
T ss_pred             ------------ccC-------CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhh------
Confidence                        000       1122447889999999999999999999999999999887665332222221      


Q ss_pred             eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEE-EECCCccc
Q 010816          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV-WDIRTQKL  463 (500)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~i-wd~~~~~~  463 (500)
                                           + .|..+.|+....|.++-+ |....+..
T Consensus       925 ---------------------a-apsdq~L~~saldHslaVnWhaldgim  952 (1034)
T KOG4190|consen  925 ---------------------A-APSDQALAQSALDHSLAVNWHALDGIM  952 (1034)
T ss_pred             ---------------------c-CchhHHHHhhcccceeEeeehhcCCee
Confidence                                 1 467778888888888888 87655443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.17  E-value=1.4e-08  Score=99.54  Aligned_cols=232  Identities=19%  Similarity=0.222  Sum_probs=129.6

Q ss_pred             CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (500)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (500)
                      ..|.++|...... ..+..+...+.+..|+|||++|+.++.+   ..|.+||+.+++...  +.                
T Consensus       170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--~~----------------  230 (417)
T TIGR02800       170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--VA----------------  230 (417)
T ss_pred             ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--ee----------------
Confidence            3577888764433 3455567778999999999999877644   367777776553210  00                


Q ss_pred             CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-EEEeCCC--eEEEEeCCCCeeEEEeecCCc
Q 010816          207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDC--TIKVWETTQGKLIRELKGHGH  282 (500)
Q Consensus       207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~t~~~dg--~i~lwd~~~~~~~~~~~~~~~  282 (500)
                                                     .+...+.+..|++|+. | ++.+.++  .|.+||+.++...+ +..+..
T Consensus       231 -------------------------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~  278 (417)
T TIGR02800       231 -------------------------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPG  278 (417)
T ss_pred             -------------------------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCC
Confidence                                           1111223355666652 3 3344433  57778877664332 222222


Q ss_pred             eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC-CC--eEEEEcCCCCCCCceeeecc
Q 010816          283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DF--TMFLWEPAVSKQPKTRMTGH  359 (500)
Q Consensus       283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~-d~--~v~~wd~~~~~~~~~~~~~h  359 (500)
                      ......++++                                    +..++..+. ++  .|+++|.....  ...+..+
T Consensus       279 ~~~~~~~s~d------------------------------------g~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~~~  320 (417)
T TIGR02800       279 IDTEPSWSPD------------------------------------GKSIAFTSDRGGSPQIYMMDADGGE--VRRLTFR  320 (417)
T ss_pred             CCCCEEECCC------------------------------------CCEEEEEECCCCCceEEEEECCCCC--EEEeecC
Confidence            2222233322                                    234444332 33  57777764332  2334444


Q ss_pred             cCcEEEEEECCCCCEEEEEeCCC---cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816          360 QQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS  436 (500)
Q Consensus       360 ~~~v~~l~~sp~g~~lasgs~Dg---~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (500)
                      ...+....|+|+|++|+.++.++   .|.+||+.++.... +.....                            ....+
T Consensus       321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~----------------------------~~~p~  371 (417)
T TIGR02800       321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGL----------------------------DESPS  371 (417)
T ss_pred             CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCC----------------------------CCCce
Confidence            55667889999999999888876   78899987754321 111100                            01126


Q ss_pred             EcCCCCEEEEEECCC---cEEEEECCCccccccccCcccCEEEEEEc
Q 010816          437 WSADSRLLLSGSKDS---TLKVWDIRTQKLKQDLPGHADEVFAVDWS  480 (500)
Q Consensus       437 ~s~~~~~l~s~s~d~---~v~iwd~~~~~~~~~~~~h~~~V~~l~~s  480 (500)
                      |+|+|++|+.++.++   .+++.+.. ++....+..+.+.+..++|+
T Consensus       372 ~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       372 FAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             ECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCCC
Confidence            899999988877654   35555543 33334444444455555553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.17  E-value=3.2e-08  Score=95.45  Aligned_cols=236  Identities=14%  Similarity=0.104  Sum_probs=141.6

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEE
Q 010816          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG  198 (500)
Q Consensus       119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~  198 (500)
                      ++..++.++.++.+.-+|..+++.+...... ..+.+.-.. .+..++.++.++.+..||.++|+....... .......
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~~~~~  180 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSR-VTPALTL  180 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEcc-CCCceee
Confidence            4677888889999999999998887654422 222211111 345777788899999999999875432111 0000000


Q ss_pred             EE-eeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc-----cc-----cEE-EEEeCCCCeEEEEeCCCeEEEE
Q 010816          199 IS-WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-----TL-----AVT-CVKWGGDGVIYTGSQDCTIKVW  266 (500)
Q Consensus       199 ~~-~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h-----~~-----~v~-~~~~~~~~~l~t~~~dg~i~lw  266 (500)
                      .. -.|..   ....++.+..++.+..+|.++++.+....-.     ..     .+. +... .++.++.++.+|.+..|
T Consensus       181 ~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~  256 (377)
T TIGR03300       181 RGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAAL  256 (377)
T ss_pred             cCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEE
Confidence            00 01111   1236777888899999999988766543210     00     010 1111 25678889999999999


Q ss_pred             eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (500)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~  346 (500)
                      |..+|+.+.......  .....                                      ..+..++.++.||.++.+|.
T Consensus       257 d~~tG~~~W~~~~~~--~~~p~--------------------------------------~~~~~vyv~~~~G~l~~~d~  296 (377)
T TIGR03300       257 DLRSGRVLWKRDASS--YQGPA--------------------------------------VDDNRLYVTDADGVVVALDR  296 (377)
T ss_pred             ECCCCcEEEeeccCC--ccCce--------------------------------------EeCCEEEEECCCCeEEEEEC
Confidence            999988765443110  00000                                      01346777888999999997


Q ss_pred             CCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc
Q 010816          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG  403 (500)
Q Consensus       347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~  403 (500)
                      ...+.......-......+...  .+..|++++.||.|+++|..+|+.+..++.+..
T Consensus       297 ~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~  351 (377)
T TIGR03300       297 RSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS  351 (377)
T ss_pred             CCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence            6543221110000011111111  467889999999999999999999887775543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=1.6e-08  Score=99.08  Aligned_cols=232  Identities=18%  Similarity=0.182  Sum_probs=126.3

Q ss_pred             cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCCcccccccCcccceEEEEeeeeecC
Q 010816          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN  207 (500)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  207 (500)
                      .+.++|...... ..+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++...  +.                 
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt-----------------  258 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--VT-----------------  258 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--ec-----------------
Confidence            566777765543 2344567788999999999988876543 2  46666766543210  00                 


Q ss_pred             CCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-EEEeCCCe--EEEEeCCCCeeEEEeecCCce
Q 010816          208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDCT--IKVWETTQGKLIRELKGHGHW  283 (500)
Q Consensus       208 ~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~t~~~dg~--i~lwd~~~~~~~~~~~~~~~~  283 (500)
                                                 .+.++   .....|++||. | ++.+.++.  |.++|+.+++.. .+..+...
T Consensus       259 ---------------------------~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~  307 (448)
T PRK04792        259 ---------------------------SFPGI---NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAI  307 (448)
T ss_pred             ---------------------------CCCCC---cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCC
Confidence                                       00111   12345676663 3 33455554  667787766543 33333333


Q ss_pred             EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-EeeCCC--eEEEEcCCCCCCCceeeeccc
Q 010816          284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDF--TMFLWEPAVSKQPKTRMTGHQ  360 (500)
Q Consensus       284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~d~--~v~~wd~~~~~~~~~~~~~h~  360 (500)
                      .....++++.                                    ..++ ++..++  .++++|+....  ...+....
T Consensus       308 ~~~p~wSpDG------------------------------------~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~~g  349 (448)
T PRK04792        308 DTEPSWHPDG------------------------------------KSLIFTSERGGKPQIYRVNLASGK--VSRLTFEG  349 (448)
T ss_pred             ccceEECCCC------------------------------------CEEEEEECCCCCceEEEEECCCCC--EEEEecCC
Confidence            3444455432                                    2333 332233  45555654332  22222222


Q ss_pred             CcEEEEEECCCCCEEEEEeCC-C--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816          361 QLVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (500)
Q Consensus       361 ~~v~~l~~sp~g~~lasgs~D-g--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (500)
                      ......+|+|||++|+..+.+ +  .|.++|+.+++... +.....                            ....+|
T Consensus       350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~----------------------------d~~ps~  400 (448)
T PRK04792        350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRL----------------------------DESPSV  400 (448)
T ss_pred             CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCC----------------------------CCCceE
Confidence            223456899999998876553 3  45566777765422 111000                            001158


Q ss_pred             cCCCCEEEEEECC-C--cEEEEECCCccccccccCcccCEEEEEEcC
Q 010816          438 SADSRLLLSGSKD-S--TLKVWDIRTQKLKQDLPGHADEVFAVDWSP  481 (500)
Q Consensus       438 s~~~~~l~s~s~d-~--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~  481 (500)
                      +|||+.|+..+.+ +  .+++++. .++....+..+.+.+...+|+|
T Consensus       401 spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        401 APNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence            9999988876644 3  3667776 4555566666666777888987

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.15  E-value=1.5e-08  Score=99.38  Aligned_cols=204  Identities=18%  Similarity=0.185  Sum_probs=123.9

Q ss_pred             CcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCC---CeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (500)
Q Consensus       220 g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~d---g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (500)
                      ..|.++|..... ...+..+...+.+..|++|+. |+.++.+   ..|++||+.+++..... .+...+..++++++.  
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~~~~~~~spDg--  245 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGMNGAPAFSPDG--  245 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCCccceEECCCC--
Confidence            357777775333 333445666788889999984 4444432   47999999887543322 222333445555442  


Q ss_pred             eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCC--eEEEEcCCCCCCCceeeecccCcEEEEEECCCC
Q 010816          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG  372 (500)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~--~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g  372 (500)
                                                        ..+ ++.+.++  .|++||+....  ...+..+........|+|||
T Consensus       246 ----------------------------------~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg  289 (417)
T TIGR02800       246 ----------------------------------SKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDG  289 (417)
T ss_pred             ----------------------------------CEEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCC
Confidence                                              233 3444443  58888865432  23344444445567899999


Q ss_pred             CEEEEEeCC-C--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816          373 QWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (500)
Q Consensus       373 ~~lasgs~D-g--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~  449 (500)
                      +.|+..+.. +  .|+++|+.+++... +..+....                           ....|+|+|++++.++.
T Consensus       290 ~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~---------------------------~~~~~spdg~~i~~~~~  341 (417)
T TIGR02800       290 KSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYN---------------------------ASPSWSPDGDLIAFVHR  341 (417)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCc---------------------------cCeEECCCCCEEEEEEc
Confidence            988776653 3  57888877665432 11111111                           12368999999999888


Q ss_pred             CC---cEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816          450 DS---TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR  493 (500)
Q Consensus       450 d~---~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~  493 (500)
                      ++   .|.+||+.++... .+... .......|+|||++|+.++.++
T Consensus       342 ~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       342 EGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             cCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            76   7899998875442 22222 2234568999999998877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.15  E-value=4.9e-10  Score=107.33  Aligned_cols=295  Identities=24%  Similarity=0.336  Sum_probs=181.1

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-ceeEEecCCCC--CEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCC
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKN--WVLCIAWSADG--KHLVSGSKAGELQCWDPQTG  182 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~-~~~~~~~~h~~--~v~~v~~s~~~--~~l~s~~~d~~i~~wd~~~~  182 (500)
                      .+++.++.++|.|+-+|.++.-| +.|-|+... .+..-+ .|-.  .|..+.|+|..  .+-+.......-.+|++...
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            45677889999999999887665 445565432 222111 2222  36677888753  34444445566778987643


Q ss_pred             C--cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe-EEEEecCccccEEEEEeCC-CCeEEEEe
Q 010816          183 K--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCVKWGG-DGVIYTGS  258 (500)
Q Consensus       183 ~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~-~~~~~~~h~~~v~~~~~~~-~~~l~t~~  258 (500)
                      .  .+...+.+|...++.+.|+|.+.    ..+++++.|..+..||++... .+..+..-...-+.+.|+- ++.+++.+
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~p----dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass  177 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHP----DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS  177 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCC----cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence            2  33345789999999999998654    479999999999999998754 3333333333445677763 45566777


Q ss_pred             CCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          259 QDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       259 ~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      ..+.|++||++.|. .+..+++|-..|..+++...                                   ....+.+++.
T Consensus       178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~-----------------------------------~~s~~~s~~~  222 (1081)
T KOG0309|consen  178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRF-----------------------------------KYSEIMSSSN  222 (1081)
T ss_pred             cCCceEEEeccCCCcceEEecccceeeehHHHhhh-----------------------------------hhhhhcccCC
Confidence            88899999998774 56677776666655544321                                   1235788999


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC--EEEE--E-------eCCCcEEEEeCCCC-ceEEEEeCCcccE
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ--WVAS--A-------SFDKSIKLWNGTTG-KFVAVFRGHVGPV  405 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~--~las--g-------s~Dg~i~lwd~~~~-~~~~~~~~h~~~v  405 (500)
                      |++|+.||-............-..+|..-.|-|-|.  .+.-  |       --+.....|+..++ +.+..|.||...|
T Consensus       223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V  302 (1081)
T KOG0309|consen  223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV  302 (1081)
T ss_pred             CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence            999999997544333222222233455555555332  2221  1       11222334554443 5688999998877


Q ss_pred             EEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816          406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                      ....+..-        ..|..+         +.--.-+|++=|.|.++|+|-+..
T Consensus       303 ~eFlWR~r--------~e~~~d---------~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  303 LEFLWRKR--------KECDGD---------YDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             HHHhhhhc--------ccccCC---------CCccceeEEEeecCCceEeeeccH
Confidence            65433110        001100         111223799999999999998754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=3.4e-08  Score=96.95  Aligned_cols=233  Identities=17%  Similarity=0.183  Sum_probs=128.0

Q ss_pred             cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCcccccccCcccceEEEEeeeeecC
Q 010816          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN  207 (500)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  207 (500)
                      .|.++|.+++.+ ..+..+...+....|+|||+.|+..+.+   ..|.+||+.+++...  +....              
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~--------------  242 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFE--------------  242 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCC--------------
Confidence            477778776544 3444567789999999999999876644   257777776654211  10000              


Q ss_pred             CCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EE-EEeCCC--eEEEEeCCCCeeEEEeecCCce
Q 010816          208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDC--TIKVWETTQGKLIRELKGHGHW  283 (500)
Q Consensus       208 ~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-t~~~dg--~i~lwd~~~~~~~~~~~~~~~~  283 (500)
                                                       ..+....|+|||. |+ +.+.++  .|.+||+.+++..+ +..+...
T Consensus       243 ---------------------------------g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~  288 (430)
T PRK00178        243 ---------------------------------GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAI  288 (430)
T ss_pred             ---------------------------------CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCC
Confidence                                             1112345666652 32 333343  57777877665432 3322222


Q ss_pred             EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-CCC--eEEEEcCCCCCCCceeeeccc
Q 010816          284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDF--TMFLWEPAVSKQPKTRMTGHQ  360 (500)
Q Consensus       284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~d~--~v~~wd~~~~~~~~~~~~~h~  360 (500)
                      .....++++                                    +..++..+ .++  .|+++++.....  ..+....
T Consensus       289 ~~~~~~spD------------------------------------g~~i~f~s~~~g~~~iy~~d~~~g~~--~~lt~~~  330 (430)
T PRK00178        289 DTEPFWGKD------------------------------------GRTLYFTSDRGGKPQIYKVNVNGGRA--ERVTFVG  330 (430)
T ss_pred             cCCeEECCC------------------------------------CCEEEEEECCCCCceEEEEECCCCCE--EEeecCC
Confidence            333344443                                    22333333 233  466666543321  2222111


Q ss_pred             CcEEEEEECCCCCEEEEEeCC-C--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816          361 QLVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (500)
Q Consensus       361 ~~v~~l~~sp~g~~lasgs~D-g--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (500)
                      .......|+|||++|+..+.+ +  .|.+||+.+++.......  ..                           .....|
T Consensus       331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~---------------------------~~~p~~  381 (430)
T PRK00178        331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SL---------------------------DESPSV  381 (430)
T ss_pred             CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CC---------------------------CCCceE
Confidence            223456899999999877653 3  588889887754221110  00                           001268


Q ss_pred             cCCCCEEEEEECC-C--cEEEEECCCccccccccCcccCEEEEEEcCC
Q 010816          438 SADSRLLLSGSKD-S--TLKVWDIRTQKLKQDLPGHADEVFAVDWSPD  482 (500)
Q Consensus       438 s~~~~~l~s~s~d-~--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d  482 (500)
                      +|||++++..+.+ +  .+.++++.. ...+.+..+.+.+...+|+|-
T Consensus       382 spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        382 APNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence            9999999877654 2  466667643 333445555566778888873

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.14  E-value=1.9e-08  Score=86.52  Aligned_cols=223  Identities=20%  Similarity=0.325  Sum_probs=135.4

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEecCc---ccc---EEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeE--EEeecCCce
Q 010816          213 FVSASKDGDARIWDVSLRKCVICLSGH---TLA---VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI--RELKGHGHW  283 (500)
Q Consensus       213 ~~s~s~dg~v~iwd~~~~~~~~~~~~h---~~~---v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~--~~~~~~~~~  283 (500)
                      ++-+-.+|.|.++..........+++-   ...   ..++.|+..+ .++++..+|.+.+-+.......  +..+.|.-.
T Consensus        88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E  167 (339)
T KOG0280|consen   88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE  167 (339)
T ss_pred             eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence            455566788888866543333333321   111   2356676544 4777778888875444333332  355666554


Q ss_pred             EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC-ceeeecccCc
Q 010816          284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-KTRMTGHQQL  362 (500)
Q Consensus       284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~-~~~~~~h~~~  362 (500)
                      .....++.                                   ..++.+.+|++|+.+..||.+.+... .....-|...
T Consensus       168 ~Wta~f~~-----------------------------------~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G  212 (339)
T KOG0280|consen  168 AWTAKFSD-----------------------------------KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG  212 (339)
T ss_pred             eeeeeccc-----------------------------------CCCceEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence            44433322                                   23578899999999999999844432 2335668888


Q ss_pred             EEEEEECC-CCCEEEEEeCCCcEEEEeCCC-CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816          363 VNHVYFSP-DGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (500)
Q Consensus       363 v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  440 (500)
                      |.++.-+| .+.+|++|++|-.|++||.+. ++.+..-+ -.+.|+.+..                           +|.
T Consensus       213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~---------------------------~p~  264 (339)
T KOG0280|consen  213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKH---------------------------HPE  264 (339)
T ss_pred             eEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEe---------------------------cch
Confidence            99998876 688999999999999999884 55543221 1255666533                           222


Q ss_pred             --CCEEEEEECCCcEEEEECCCc--c---ccccccCcccCEEEEEEcCCCCEEEEEe-CCCcEE-Eec
Q 010816          441 --SRLLLSGSKDSTLKVWDIRTQ--K---LKQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLK-LWM  499 (500)
Q Consensus       441 --~~~l~s~s~d~~v~iwd~~~~--~---~~~~~~~h~~~V~~l~~s~dg~~l~s~~-~D~~v~-iW~  499 (500)
                        +.+|+++-..| .+|-+.+.+  +   .+.....|.+-.+.-+|......||||+ .|+.++ +|.
T Consensus       265 ~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  265 IFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             hhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence              22333333333 455555432  2   2334566777788888855556788875 477755 774

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.14  E-value=4.2e-10  Score=117.58  Aligned_cols=188  Identities=16%  Similarity=0.295  Sum_probs=142.1

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      .-|-..|.++.=+|...+-+||+.||.|++|.+..+..+.... .-...|+.+.|+.+|+.+..+..||.+.+|..... 
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk- 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK- 2283 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc-
Confidence            3455678888889999999999999999999998887765543 22378999999999999999999999999987622 


Q ss_pred             cccccccCcccceEEEEeeeeecCCCCceEEEE---eCCCcEEEEECCCC---eEEEEecCccccEEEEEeCCCC-eEEE
Q 010816          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA---SKDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGDG-VIYT  256 (500)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~---s~dg~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~-~l~t  256 (500)
                       .......|+.....+.|-.       ..++++   +.++.+.+||.-..   .++.  ..|...++++++.|.. .|++
T Consensus      2284 -~~~s~qchnk~~~Df~Fi~-------s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2284 -PYTSWQCHNKALSDFRFIG-------SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred             -ceeccccCCccccceeeee-------hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEe
Confidence             2223466777766666543       134443   46789999996432   2333  6799999999999875 5889


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                      ||.+|.|++||++..+..+.++.                                            .  ...+.+++|+
T Consensus      2354 ggr~G~v~l~D~rqrql~h~~~~--------------------------------------------~--~~~~~f~~~s 2387 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQA--------------------------------------------L--DTREYFVTGS 2387 (2439)
T ss_pred             cCCcCcEEEeehHHHHHHHHhhh--------------------------------------------h--hhhheeeccC
Confidence            99999999999987665543321                                            0  0246799999


Q ss_pred             CCCeEEEEcCCCC
Q 010816          337 DDFTMFLWEPAVS  349 (500)
Q Consensus       337 ~d~~v~~wd~~~~  349 (500)
                      ..|.++||++...
T Consensus      2388 s~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2388 SEGNIKIWRLSEF 2400 (2439)
T ss_pred             cccceEEEEcccc
Confidence            9999999997654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=4e-08  Score=95.42  Aligned_cols=241  Identities=16%  Similarity=0.105  Sum_probs=130.6

Q ss_pred             CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE---EEeCCC--eEEEEeCCCCCcccccccCcccceEEEEeeee
Q 010816          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV---SGSKAG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPV  204 (500)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~---s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~  204 (500)
                      ..|.+.|.+.+.+. .+......+.+-.|+|||+.++   +...++  .|.+.++.+|+...  +...........|+| 
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~p~wSP-  240 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLMPTFSP-  240 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccceEECC-
Confidence            35667777665443 3444455667889999997532   333344  46677887765322  222233334566766 


Q ss_pred             ecCCCCceEEEEeC-CC----cEEEEECCCC---eEEEEecCccccEEEEEeCCCCe-EEEEe-CCCeEEEEeCCCCeeE
Q 010816          205 HLNAPCRRFVSASK-DG----DARIWDVSLR---KCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVWETTQGKLI  274 (500)
Q Consensus       205 ~~~~~~~~~~s~s~-dg----~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-l~t~~-~dg~i~lwd~~~~~~~  274 (500)
                          ++++++..+. +|    .+.+|++..+   .......++........|+|||. |+..+ .+|..++|....    
T Consensus       241 ----DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~----  312 (428)
T PRK01029        241 ----RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI----  312 (428)
T ss_pred             ----CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC----
Confidence                4556665432 22    3444666542   22222222223345667888874 44333 455444442110    


Q ss_pred             EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce
Q 010816          275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT  354 (500)
Q Consensus       275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~  354 (500)
                                                                                              ........
T Consensus       313 ------------------------------------------------------------------------~~~g~~~~  320 (428)
T PRK01029        313 ------------------------------------------------------------------------DPEGQSPR  320 (428)
T ss_pred             ------------------------------------------------------------------------cccccceE
Confidence                                                                                    00000001


Q ss_pred             eeecccCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecccc
Q 010816          355 RMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCC  431 (500)
Q Consensus       355 ~~~~h~~~v~~l~~sp~g~~lasgs~D---g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (500)
                      .+..+...+....|||||+.|+..+.+   ..|.+||+.+++......+ ...+                          
T Consensus       321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~--------------------------  373 (428)
T PRK01029        321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENK--------------------------  373 (428)
T ss_pred             EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCc--------------------------
Confidence            111222234567899999999876553   3699999988865432211 1111                          


Q ss_pred             ceeeEEcCCCCEEEEEEC---CCcEEEEECCCccccccccCcccCEEEEEEcCCC
Q 010816          432 MSLYSWSADSRLLLSGSK---DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG  483 (500)
Q Consensus       432 ~~~~~~s~~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg  483 (500)
                       ....|+|||+.|+..+.   +..|.++|+.+++..... ...+.+...+|+|-.
T Consensus       374 -~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        374 -ESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP  426 (428)
T ss_pred             -cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence             11368999998875443   346888898877654333 334556678898854

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.12  E-value=9.2e-07  Score=93.16  Aligned_cols=336  Identities=16%  Similarity=0.194  Sum_probs=201.3

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEE----eCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLW----DLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ--  180 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iw----d~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~--  180 (500)
                      ..+.|.++++-++...++.+..+|.|.+.    +..+...- ....-...|.+++||||+..|+.+..++++.+.+..  
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd  152 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD  152 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence            35789999999999999999999999999    44433221 111235689999999999999999999988775321  


Q ss_pred             -------------C--------CCcccccccC------------------------cccceEEEEeeeeecCCCCceEEE
Q 010816          181 -------------T--------GKPSGNPLSG------------------------HKKWITGISWEPVHLNAPCRRFVS  215 (500)
Q Consensus       181 -------------~--------~~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~~~~~~~s  215 (500)
                                   .        |+.. +.+.|                        +...-..++|..     ++..|++
T Consensus       153 ~i~E~~l~~~~~~~~~~VsVGWGkKe-TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-----DG~yFAV  226 (928)
T PF04762_consen  153 PISEVPLDSDDFGESKHVSVGWGKKE-TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-----DGEYFAV  226 (928)
T ss_pred             EEEEeecCccccCCCceeeeccCccc-CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-----CCcEEEE
Confidence                         0        0000 00000                        222344566754     6677777


Q ss_pred             EeC------CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCC----CeEEEEeCCCCeeEEEee----cCC
Q 010816          216 ASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD----CTIKVWETTQGKLIRELK----GHG  281 (500)
Q Consensus       216 ~s~------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~d----g~i~lwd~~~~~~~~~~~----~~~  281 (500)
                      .+.      -+.+|||+-+ |....+-..-.+--.+++|.|.|.++++..-    ..|.+|. ++|-....+.    ...
T Consensus       227 ss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~  304 (928)
T PF04762_consen  227 SSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEE  304 (928)
T ss_pred             EEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence            654      2578999854 5433332222223357899999876665542    5677776 4554444432    335


Q ss_pred             ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC-ceeee-cc
Q 010816          282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-KTRMT-GH  359 (500)
Q Consensus       282 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~-~~~~~-~h  359 (500)
                      ..|..+.|+.+.                                    +.|+..-.|. |.+|-..+.... +..+. ..
T Consensus       305 ~~v~~l~Wn~ds------------------------------------~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~  347 (928)
T PF04762_consen  305 EKVIELAWNSDS------------------------------------EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS  347 (928)
T ss_pred             ceeeEEEECCCC------------------------------------CEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence            567788887653                                    3444444443 889976543321 11121 22


Q ss_pred             cCcEEEEEECC-CCCEEEEEeCCCcEEEEeC----CCC--------ceEEEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816          360 QQLVNHVYFSP-DGQWVASASFDKSIKLWNG----TTG--------KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (500)
Q Consensus       360 ~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~----~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  426 (500)
                      ...+..+.|+| +...|...+.+|.+..++.    ..+        ..+.+..|..-.++.++.    ....|......+
T Consensus       348 ~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~----a~VPPPMs~~~l  423 (928)
T PF04762_consen  348 SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRR----AVVPPPMSSYEL  423 (928)
T ss_pred             CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccc----cCCCchHhceEE
Confidence            23355599999 4566777777777766543    211        123333333322222221    123345556667


Q ss_pred             eccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc--------cccccC----------cccCEEEEEEcCCCCEEEE
Q 010816          427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL--------KQDLPG----------HADEVFAVDWSPDGEKVAS  488 (500)
Q Consensus       427 ~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~--------~~~~~~----------h~~~V~~l~~s~dg~~l~s  488 (500)
                      ..+..+..++|++++..+|+-..||.+.+|.......        ...+..          -...+..+.|..+...++.
T Consensus       424 ~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (928)
T PF04762_consen  424 ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVL  503 (928)
T ss_pred             cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEE
Confidence            7778888899999998899999999999998543211        111111          1234677888777766666


Q ss_pred             EeCC
Q 010816          489 GGKD  492 (500)
Q Consensus       489 ~~~D  492 (500)
                      ...+
T Consensus       504 ~~~~  507 (928)
T PF04762_consen  504 SDSD  507 (928)
T ss_pred             EecC
Confidence            5554

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.11  E-value=8.9e-10  Score=105.63  Aligned_cols=293  Identities=18%  Similarity=0.312  Sum_probs=170.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-CcccccccCc-ccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC
Q 010816          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG-KPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (500)
Q Consensus       150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~  227 (500)
                      .+++..+..+|.|+-++.++.-|-. +-|+... .... .+..- .-.|-.+.|+|..   ...+-+.......-.+|++
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr-~l~h~tpw~vad~qws~h~---a~~~wiVsts~qkaiiwnl   98 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPR-WLHHITPWQVADVQWSPHP---AKPYWIVSTSNQKAIIWNL   98 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCce-eeeccCcchhcceecccCC---CCceeEEecCcchhhhhhh
Confidence            4567888999999988888876643 3344322 1111 11111 1123455676632   1223444445556678887


Q ss_pred             CC---CeEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCee-EEEeecCCceEEEEEecCcceeeecccc
Q 010816          228 SL---RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFD  301 (500)
Q Consensus       228 ~~---~~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (500)
                      ..   ...-..+.||...|+.+.|.+..  .+++++-|-.+..||++.... +.....-...-..+.+.-          
T Consensus        99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny----------  168 (1081)
T KOG0309|consen   99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY----------  168 (1081)
T ss_pred             hcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc----------
Confidence            43   34456678999999999998753  689999999999999987532 111110000001111110          


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeC
Q 010816          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASF  380 (500)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~  380 (500)
                                                ....+.+.+..+.+++||.+.+..+...+++|...|+.++|.. -...+.+.+.
T Consensus       169 --------------------------k~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~  222 (1081)
T KOG0309|consen  169 --------------------------KDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN  222 (1081)
T ss_pred             --------------------------cCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC
Confidence                                      0113455666778999999988888888999999999999976 3456889999


Q ss_pred             CCcEEEEeCCCCceE-EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          381 DKSIKLWNGTTGKFV-AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       381 Dg~i~lwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                      ||+|+.||....... ........++..-++-+...      -++...+          ..+..+-----++.-..|+..
T Consensus       223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~------g~~~mp~----------~G~n~v~~~~c~n~d~e~n~~  286 (1081)
T KOG0309|consen  223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE------GYCIMPM----------VGGNMVPQLRCENSDLEWNVF  286 (1081)
T ss_pred             CCceeeecccccccccceeccccCcceeccccccCc------eeEeccc----------cCCeeeeeccccchhhhhccc
Confidence            999999998753211 11111223333322211100      0011000          011110000011122334443


Q ss_pred             C-ccccccccCcccCEEEEEEcCCC----------CEEEEEeCCCcEEEec
Q 010816          460 T-QKLKQDLPGHADEVFAVDWSPDG----------EKVASGGKDRVLKLWM  499 (500)
Q Consensus       460 ~-~~~~~~~~~h~~~V~~l~~s~dg----------~~l~s~~~D~~v~iW~  499 (500)
                      + .+.+..+.||.+.|...-|-..+          -.|+|=|.|.++|+|.
T Consensus       287 ~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp  337 (1081)
T KOG0309|consen  287 DLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP  337 (1081)
T ss_pred             cCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence            3 34567889999988777665432          3799999999999995

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.09  E-value=1.3e-08  Score=89.26  Aligned_cols=245  Identities=18%  Similarity=0.284  Sum_probs=152.8

Q ss_pred             eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc
Q 010816          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD-PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (500)
Q Consensus       143 ~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~  221 (500)
                      +..++||.+.|+....-|...-+++++.|.++++|- .+.++.-..........++++.+.+     ..++++.|-..|+
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-----e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-----ESRRLYVGQDNGT   91 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-----cceEEEEEEecce
Confidence            345678888888888888888899999999999994 3444432222222234455665544     3467888888888


Q ss_pred             EEEEECCC----CeEEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceee
Q 010816          222 ARIWDVSL----RKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (500)
Q Consensus       222 v~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  296 (500)
                      +.-+.+..    ...++....|...|..+.|+-. ..+++.+.|..+.---.+.|..+..                    
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~--------------------  151 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGG--------------------  151 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccc--------------------
Confidence            87775532    2233334568888888888743 4577777776654322222221100                    


Q ss_pred             eccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEE
Q 010816          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA  376 (500)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~la  376 (500)
                                                        ++..+.....  -+|+     .......|...|+.+.+-++     
T Consensus       152 ----------------------------------Y~~~~~~t~~--~~d~-----~~~fvGd~~gqvt~lr~~~~-----  185 (404)
T KOG1409|consen  152 ----------------------------------YNFETPASAL--QFDA-----LYAFVGDHSGQITMLKLEQN-----  185 (404)
T ss_pred             ----------------------------------eEeeccCCCC--ceee-----EEEEecccccceEEEEEeec-----
Confidence                                              0000000000  0000     00011123333333333322     


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEE
Q 010816          377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW  456 (500)
Q Consensus       377 sgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iw  456 (500)
                                    ....+.++++|.++++++                           +|.+..+.|.+|..|..|.+|
T Consensus       186 --------------~~~~i~~~~~h~~~~~~l---------------------------~Wd~~~~~LfSg~~d~~vi~w  224 (404)
T KOG1409|consen  186 --------------GCQLITTFNGHTGEVTCL---------------------------KWDPGQRLLFSGASDHSVIMW  224 (404)
T ss_pred             --------------CCceEEEEcCcccceEEE---------------------------EEcCCCcEEEeccccCceEEE
Confidence                          234456678888888776                           678888899999999999999


Q ss_pred             ECCCccc-cccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          457 DIRTQKL-KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       457 d~~~~~~-~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |+-..+. ...+.+|.+.|..+..-+--+.|.+++.||.|.+|+
T Consensus       225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             eccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence            9876543 346778999999888877789999999999999997

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=9.8e-08  Score=91.69  Aligned_cols=266  Identities=17%  Similarity=0.330  Sum_probs=163.6

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce------e---------EEecCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP------M---------FKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~------~---------~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~  173 (500)
                      ....|++|+....++|.|+.||.+++-.+.+...      +         ..+.||+..|..+.|+.+.+.|-+...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            4578999999999999999999999998765321      1         246699999999999999999999999999


Q ss_pred             EEEEeCCCCCcccccc-cCcccceEEEEeeeeecCCCCceE---------EEEeCCCcEEEEECCCCeEEEEecCccccE
Q 010816          174 LQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRF---------VSASKDGDARIWDVSLRKCVICLSGHTLAV  243 (500)
Q Consensus       174 i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~---------~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v  243 (500)
                      |.+|-+-+|......+ ...+..|.+++|+.     ++.++         +.|+-||. |||.-+.       ++.  -.
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-----dG~kIcIvYeDGavIVGsvdGN-RIwgKeL-------kg~--~l  159 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-----DGTKICIVYEDGAVIVGSVDGN-RIWGKEL-------KGQ--LL  159 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcC-----CCcEEEEEEccCCEEEEeeccc-eecchhc-------chh--ec
Confidence            9999988776433222 23455678899964     33444         44555543 5554321       111  12


Q ss_pred             EEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcce--eeeccccCCCCCCCCHHHHHHHHHHh
Q 010816          244 TCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA--LRTGAFDHTGKQYSSPEEMKKAALER  320 (500)
Q Consensus       244 ~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (500)
                      ..+.|++|.. ++.+-..|.+.+||.... ....++. ...|+.-.......  +....+.+ +               +
T Consensus       160 ~hv~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~-~c~Vn~tg~~s~~~~kia~i~w~~-g---------------~  221 (1189)
T KOG2041|consen  160 AHVLWSEDLEQALFKKANGETHLYDNQGN-FERKLEK-DCEVNGTGIFSNFPTKIAEIEWNT-G---------------P  221 (1189)
T ss_pred             cceeecccHHHHHhhhcCCcEEEeccccc-HHHhhhh-ceEEeeeeeecCCCccccceeecc-C---------------c
Confidence            2467888763 455667799999986532 1111110 00011111110000  00000000 0               0


Q ss_pred             hhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC---------cEEEEeCCC
Q 010816          321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK---------SIKLWNGTT  391 (500)
Q Consensus       321 ~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg---------~i~lwd~~~  391 (500)
                      +.. ..+....++.+-..|.+.+-.......|...-.+  -.+....|+++|..||.++.|.         .|..|.. -
T Consensus       222 ~~~-v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~  297 (1189)
T KOG2041|consen  222 YQP-VPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-Y  297 (1189)
T ss_pred             ccc-CCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-c
Confidence            000 1112346888999999888765544444443333  4577889999999999988753         3455543 3


Q ss_pred             CceEEEEeCCcccEEEEEee
Q 010816          392 GKFVAVFRGHVGPVYQIRFE  411 (500)
Q Consensus       392 ~~~~~~~~~h~~~v~~~~~~  411 (500)
                      |+.+.+++.....|+.+.++
T Consensus       298 G~i~gtlkvpg~~It~lsWE  317 (1189)
T KOG2041|consen  298 GHIVGTLKVPGSCITGLSWE  317 (1189)
T ss_pred             hhheEEEecCCceeeeeEEc
Confidence            66677777766667776654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=1.9e-07  Score=91.75  Aligned_cols=202  Identities=17%  Similarity=0.150  Sum_probs=119.7

Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCC---CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceee
Q 010816          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~d---g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  296 (500)
                      .+.++|...+. ...+..+...+....|++||. |+..+.+   ..|.+||+.+++... +......+....++|+    
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpD----  253 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPD----  253 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCC----
Confidence            46677776443 333445667788999999984 5444432   368889998876433 2222222334455544    


Q ss_pred             eccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-EeeCCC--eEEEEcCCCCCCCceeeecccCcEEEEEECCCCC
Q 010816          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (500)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~d~--~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~  373 (500)
                                                      +..++ +.+.++  .|+++|+....  ...+..+........|+|||+
T Consensus       254 --------------------------------G~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~  299 (430)
T PRK00178        254 --------------------------------GSKLAFVLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGR  299 (430)
T ss_pred             --------------------------------CCEEEEEEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCC
Confidence                                            23343 444444  57778875432  234455555566789999999


Q ss_pred             EEEEEeC-CC--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC
Q 010816          374 WVASASF-DK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD  450 (500)
Q Consensus       374 ~lasgs~-Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d  450 (500)
                      .|+..+. +|  .|+++|+.+++....... ..                           .....+|+|+|+.|+..+.+
T Consensus       300 ~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~---------------------------~~~~~~~Spdg~~i~~~~~~  351 (430)
T PRK00178        300 TLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GN---------------------------YNARPRLSADGKTLVMVHRQ  351 (430)
T ss_pred             EEEEEECCCCCceEEEEECCCCCEEEeecC-CC---------------------------CccceEECCCCCEEEEEEcc
Confidence            8876654 33  577778777654321110 00                           00112689999999877653


Q ss_pred             -C--cEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          451 -S--TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       451 -~--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                       +  .|.+||+.+++... +.. ........|+|||+.|+..+.+
T Consensus       352 ~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        352 DGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             CCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEec
Confidence             3  57889998876532 221 1122356899999999876544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.03  E-value=4.1e-08  Score=84.42  Aligned_cols=178  Identities=18%  Similarity=0.182  Sum_probs=116.1

Q ss_pred             cEEEEEEcC---CCC-eEEEEeCCCcEEEEeCCCCceeEEecCC---C---CCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          110 AVLSVAFSP---DGR-QLASGSGDTTVRLWDLNTQTPMFKCTGH---K---NWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       110 ~V~~~~~sp---~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h---~---~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      .++.+.|.-   +|. .|+-+-.+|.|.++..........+.+-   .   .-..++.|++.+..+++...+|.+..-+.
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~  150 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE  150 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence            344454432   333 4666677888999876543333333221   1   12457889999999999999998884443


Q ss_pred             CCCCcc-cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-CCeEEEE-ecCccccEEEEEeCCC--CeE
Q 010816          180 QTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVIC-LSGHTLAVTCVKWGGD--GVI  254 (500)
Q Consensus       180 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~-~~~~~~~-~~~h~~~v~~~~~~~~--~~l  254 (500)
                      ..+... .+..+.|....--..|+..++    +.+.+||.|+.+..||++ .++++.. .+-|+..|.++.-++.  .+|
T Consensus       151 t~~~le~vq~wk~He~E~Wta~f~~~~p----nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I  226 (339)
T KOG0280|consen  151 TEMVLEKVQTWKVHEFEAWTAKFSDKEP----NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYI  226 (339)
T ss_pred             ceeeeeecccccccceeeeeeecccCCC----ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceE
Confidence            332211 134667776665555554332    578999999999999999 4445544 4568899999987764  379


Q ss_pred             EEEeCCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCc
Q 010816          255 YTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTE  292 (500)
Q Consensus       255 ~t~~~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~  292 (500)
                      +||+.|-.|++||.+ .++.+...+ ....|..+..+|.
T Consensus       227 ~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  227 ATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPE  264 (339)
T ss_pred             EEeccccceeeeehhcccCccccCc-cccceEEEEecch
Confidence            999999999999998 455543322 2245666665553

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.01  E-value=3.2e-06  Score=78.37  Aligned_cols=269  Identities=14%  Similarity=0.081  Sum_probs=147.6

Q ss_pred             CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCCcccccccCcccc----
Q 010816          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK----------AGELQCWDPQTGKPSGNPLSGHKKW----  195 (500)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~----------d~~i~~wd~~~~~~~~~~~~~~~~~----  195 (500)
                      ++|.+.|..+.+.+..+..-..+-. + ++||++.|+.+..          +..|.+||..+.+.......+.+-.    
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            7899999999887766653333322 4 8999998877655          7899999999987654332211100    


Q ss_pred             --eEEEEeeeeecCCCCceEEEEe--CCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCC-
Q 010816          196 --ITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ-  270 (500)
Q Consensus       196 --v~~~~~~~~~~~~~~~~~~s~s--~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~-  270 (500)
                        -..+.+     +.+++.+....  .+..|-+.|+.+++.+..+.--. ...-.. .++....+-+.||......+.+ 
T Consensus       105 ~~~~~~~l-----s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~-t~e~~~~~~~~Dg~~~~v~~d~~  177 (352)
T TIGR02658       105 TYPWMTSL-----TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP-TANDTFFMHCRDGSLAKVGYGTK  177 (352)
T ss_pred             CccceEEE-----CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE-ecCCccEEEeecCceEEEEecCC
Confidence              012222     33555555444  37899999999988877654211 111111 1122222333444433322221 


Q ss_pred             CeeEEEeecCCceEEEEE-ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC
Q 010816          271 GKLIRELKGHGHWVNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (500)
Q Consensus       271 ~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~  349 (500)
                      |+ ..        ..... +..+.       +   ..+..+            ......+..+..... |+|.+.|+...
T Consensus       178 g~-~~--------~~~~~vf~~~~-------~---~v~~rP------------~~~~~dg~~~~vs~e-G~V~~id~~~~  225 (352)
T TIGR02658       178 GN-PK--------IKPTEVFHPED-------E---YLINHP------------AYSNKSGRLVWPTYT-GKIFQIDLSSG  225 (352)
T ss_pred             Cc-eE--------EeeeeeecCCc-------c---ccccCC------------ceEcCCCcEEEEecC-CeEEEEecCCC
Confidence            11 10        00000 00000       0   000000            000001233434334 99999885332


Q ss_pred             CC----Cceeeec-------ccCcEEEEEECCCCCEEEEEeC----------CCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816          350 KQ----PKTRMTG-------HQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (500)
Q Consensus       350 ~~----~~~~~~~-------h~~~v~~l~~sp~g~~lasgs~----------Dg~i~lwd~~~~~~~~~~~~h~~~v~~~  408 (500)
                      ..    ....+..       ......-++++|+++.+.....          .+.|.++|..+++.+..+..- .....+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~i  304 (352)
T TIGR02658       226 DAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSI  304 (352)
T ss_pred             cceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeE
Confidence            11    1111110       1222334999999988877432          257999999999988766531 233333


Q ss_pred             EeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEEECCCccccccc
Q 010816          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDL  467 (500)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iwd~~~~~~~~~~  467 (500)
                                                 +++||++ +|++.+ .++.|.++|..+++.++.+
T Consensus       305 ---------------------------avS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       305 ---------------------------NVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ---------------------------EECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence                                       5699999 888776 5788999999999887766

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=1.4e-07  Score=91.56  Aligned_cols=352  Identities=15%  Similarity=0.111  Sum_probs=195.0

Q ss_pred             ccccccCCcccEEEEEEcCCC------------CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcC---CC-C
Q 010816          100 CSATIAGHTEAVLSVAFSPDG------------RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA---DG-K  163 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~------------~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~---~~-~  163 (500)
                      ..+.+.-|...|+.+.|.|-.            -+||++.-.|.|.+||......+..+..|.+++..+.|-+   ++ .
T Consensus        47 ~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd  126 (1062)
T KOG1912|consen   47 LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRD  126 (1062)
T ss_pred             hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchh
Confidence            345667789999999998731            2578888899999999988877777888999999999975   34 5


Q ss_pred             EEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-------CCeEEEEe
Q 010816          164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LRKCVICL  236 (500)
Q Consensus       164 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~-------~~~~~~~~  236 (500)
                      .|+.-....++.+|+..+|......-.+| ....++.+.|++.    +.|..-+..|.+-+-+.-       .++..+..
T Consensus       127 ~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~----rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~  201 (1062)
T KOG1912|consen  127 VLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDS----RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT  201 (1062)
T ss_pred             eeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCc----ceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence            67777778899999999997654322233 3455677777543    345555555655555431       12222222


Q ss_pred             cCccc------------c-------------EEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEec
Q 010816          237 SGHTL------------A-------------VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (500)
Q Consensus       237 ~~h~~------------~-------------v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~  290 (500)
                      ..|..            .             ....+|+|.- .++....-..+.++|++-..++.........+.-+.+-
T Consensus       202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl  281 (1062)
T KOG1912|consen  202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL  281 (1062)
T ss_pred             cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence            22221            0             0012234321 23344556678888876555554443332222222222


Q ss_pred             CcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc-----cCcEEE
Q 010816          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-----QQLVNH  365 (500)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h-----~~~v~~  365 (500)
                      |+                                  ...+.+.+...||.+.+|-.............|     ...+.+
T Consensus       282 P~----------------------------------~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~  327 (1062)
T KOG1912|consen  282 PD----------------------------------PRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHV  327 (1062)
T ss_pred             cC----------------------------------CCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEE
Confidence            22                                  234678999999999999643321111110000     111222


Q ss_pred             -----------EEECCC-CCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc-EEEEEeeeee-------------eecCC
Q 010816          366 -----------VYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP-VYQIRFELIY-------------CFRYP  419 (500)
Q Consensus       366 -----------l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~-v~~~~~~~~~-------------~~~~~  419 (500)
                                 ..-.|. ...++.--.+|.+.+|.+..|+.-........+ +..+.|....             .-..+
T Consensus       328 vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~  407 (1062)
T KOG1912|consen  328 VRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHS  407 (1062)
T ss_pred             EeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCC
Confidence                       222343 334444445778889988866532111110000 0001110000             00011


Q ss_pred             CCceeeeeccc-cceeeEEcCCC-------CEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816          420 SNFYCVVDMSC-CMSLYSWSADS-------RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       420 ~~~~~~~~~~~-~~~~~~~s~~~-------~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~  491 (500)
                      .+..+.....- ..+...-.|.|       .++|.|...|+|.++|+.++...+.+..|...|.++.|-... .|++.+.
T Consensus       408 sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s-slvSfsy  486 (1062)
T KOG1912|consen  408 SGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS-SLVSFSY  486 (1062)
T ss_pred             CCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce-eEEEeee
Confidence            11111110000 00111111222       278889999999999999999999999999999999997653 4555543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.99  E-value=8.9e-08  Score=81.35  Aligned_cols=233  Identities=17%  Similarity=0.103  Sum_probs=146.1

Q ss_pred             EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-EEEecCccccEEEEEeC--CCCeEEEEeCCCeEEEEeCCCCee
Q 010816          197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKL  273 (500)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~~~h~~~v~~~~~~--~~~~l~t~~~dg~i~lwd~~~~~~  273 (500)
                      +++.|-|..+-..|..++.|+.-|...+|...+.+. ++....|...|+-+.-.  ....+..++.|.+++++++..+..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            466777777777888999999999999999986543 23333344433322111  112467789999999998765433


Q ss_pred             EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCc
Q 010816          274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK  353 (500)
Q Consensus       274 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~  353 (500)
                      -..+......+.+++.+++                                    +..+++-++...|..|.+.......
T Consensus       151 ~~~~h~~~~~~ns~~~snd------------------------------------~~~~~~Vgds~~Vf~y~id~~sey~  194 (344)
T KOG4532|consen  151 KFAVHNQNLTQNSLHYSND------------------------------------PSWGSSVGDSRRVFRYAIDDESEYI  194 (344)
T ss_pred             cceeeccccceeeeEEcCC------------------------------------CceEEEecCCCcceEEEeCCcccee
Confidence            2222111122555555554                                    3455666667777777665433221


Q ss_pred             --eeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE-----EEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816          354 --TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-----AVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (500)
Q Consensus       354 --~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  426 (500)
                        ......++.=-+.+|+.....+|++..||++.|||++.....     .+-..|.+.+...+|                
T Consensus       195 ~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~F----------------  258 (344)
T KOG4532|consen  195 ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRF----------------  258 (344)
T ss_pred             eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEe----------------
Confidence              123333444567889999999999999999999999864322     223357888877765                


Q ss_pred             eccccceeeEEcCCC--CEEEEEECCCcEEEEECCCcccccc-------ccCcccC-EEEEEEcCCCCEEEEEeCC
Q 010816          427 DMSCCMSLYSWSADS--RLLLSGSKDSTLKVWDIRTQKLKQD-------LPGHADE-VFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       427 ~~~~~~~~~~~s~~~--~~l~s~s~d~~v~iwd~~~~~~~~~-------~~~h~~~-V~~l~~s~dg~~l~s~~~D  492 (500)
                                 ++.|  .+|...-.-+.+++.|+++.+-.+.       ...|... ++.-.|+.++..+.+.+++
T Consensus       259 -----------sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  259 -----------SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             -----------cCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence                       3333  3455455556789999988654332       2234433 7888888888777766654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.98  E-value=1.5e-06  Score=84.17  Aligned_cols=308  Identities=10%  Similarity=0.061  Sum_probs=174.6

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCceeEEecCCC--CCEE-----EEEEcC--CCCEEEEEeCCCeEEEEeCCCCCccccccc
Q 010816          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHK--NWVL-----CIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPLS  190 (500)
Q Consensus       120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~-----~v~~s~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  190 (500)
                      +..++.++.++.+.-+|.++++.+....-..  ....     .+.-.|  ++..++.++.++.+..+|.++|+..-....
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  148 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV  148 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence            5677778888888889998888776543211  0000     000011  356788888999999999999986543211


Q ss_pred             CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccE-----EEEEeCCCCeEEEEeCCCeEEE
Q 010816          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-----TCVKWGGDGVIYTGSQDCTIKV  265 (500)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~l~t~~~dg~i~l  265 (500)
                      .  ..+.   -.|..   ...+++.+..++.+.-+|..+++.+..........     .+... .++.++.++.++.+..
T Consensus       149 ~--~~~~---ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a  219 (394)
T PRK11138        149 A--GEAL---SRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSA  219 (394)
T ss_pred             C--Ccee---cCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE-ECCEEEEEcCCCEEEE
Confidence            1  1111   11211   12467778889999999999998876654321100     00011 1356777888999999


Q ss_pred             EeCCCCeeEEEeecCCce-EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEE
Q 010816          266 WETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (500)
Q Consensus       266 wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~w  344 (500)
                      +|..+|+.+......... ...+.             ........+            .   ...+.++.++.++.+...
T Consensus       220 ~d~~~G~~~W~~~~~~~~~~~~~~-------------~~~~~~~sP------------~---v~~~~vy~~~~~g~l~al  271 (394)
T PRK11138        220 VLMEQGQLIWQQRISQPTGATEID-------------RLVDVDTTP------------V---VVGGVVYALAYNGNLVAL  271 (394)
T ss_pred             EEccCChhhheeccccCCCccchh-------------cccccCCCc------------E---EECCEEEEEEcCCeEEEE
Confidence            999988765543211000 00000             000000000            0   013456677788888888


Q ss_pred             cCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCcee
Q 010816          345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYC  424 (500)
Q Consensus       345 d~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  424 (500)
                      |....+.......+.   ...+.  ..+..|..++.||.+..+|..+|+.+-....-.....                  
T Consensus       272 d~~tG~~~W~~~~~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~------------------  328 (394)
T PRK11138        272 DLRSGQIVWKREYGS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLL------------------  328 (394)
T ss_pred             ECCCCCEEEeecCCC---ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcc------------------
Confidence            876554322211111   11111  2466777888999999999999876432211000000                  


Q ss_pred             eeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEE-EEEcCCCCEEEEEeCCCcEEEec
Q 010816          425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFA-VDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       425 ~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                              +...  -.+..++.++.||.++..|..+++.+....-....+.+ ..+  .+..|+.++.||.|+.+.
T Consensus       329 --------~sp~--v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        329 --------TAPV--LYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             --------cCCE--EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence                    0000  12557788999999999999999887654332222332 122  245899999999988764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=2.5e-07  Score=89.92  Aligned_cols=213  Identities=16%  Similarity=0.103  Sum_probs=113.4

Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEeCCCCe---E-EEEeCCC--eEEEEeCCCCeeEEEeecCCceEEEEEecCcce
Q 010816          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV---I-YTGSQDC--TIKVWETTQGKLIRELKGHGHWVNSLALSTEYA  294 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~---l-~t~~~dg--~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  294 (500)
                      .|.+.|...+.... +......+.+-.|+|||.   + ++...++  .|.+.++.+|+..+... .........++|++ 
T Consensus       166 ~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG-  242 (428)
T PRK01029        166 ELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRK-  242 (428)
T ss_pred             eEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCC-
Confidence            45666654433222 323344556778999973   2 3444444  47777887765433221 22223345566553 


Q ss_pred             eeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-C----CCeEEEEcCCCC--CCCceeeecccCcEEEEE
Q 010816          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-D----DFTMFLWEPAVS--KQPKTRMTGHQQLVNHVY  367 (500)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~----d~~v~~wd~~~~--~~~~~~~~~h~~~v~~l~  367 (500)
                                                         ..++..+ .    +-.+..|++...  ..+.....++.......+
T Consensus       243 -----------------------------------~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~  287 (428)
T PRK01029        243 -----------------------------------KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPS  287 (428)
T ss_pred             -----------------------------------CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeE
Confidence                                               2333222 1    223344665432  112222222223446789


Q ss_pred             ECCCCCEEEEEe-CCCcEEEE--eCCC-CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816          368 FSPDGQWVASAS-FDKSIKLW--NGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL  443 (500)
Q Consensus       368 ~sp~g~~lasgs-~Dg~i~lw--d~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  443 (500)
                      |+|||+.|+..+ .+|...+|  ++.. +.....+..+...                           .....|||||+.
T Consensus       288 wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~---------------------------~~~p~wSPDG~~  340 (428)
T PRK01029        288 FSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRN---------------------------SSCPAWSPDGKK  340 (428)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCC---------------------------ccceeECCCCCE
Confidence            999999888765 46655555  4332 1112222211111                           122378999999


Q ss_pred             EEEEECC---CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeC-C--CcEEEec
Q 010816          444 LLSGSKD---STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK-D--RVLKLWM  499 (500)
Q Consensus       444 l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~-D--~~v~iW~  499 (500)
                      |+..+.+   ..|.+||+.+++... +......+....|+|||+.|+..+. +  ..|++|+
T Consensus       341 Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd  401 (428)
T PRK01029        341 IAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS  401 (428)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            9877653   368999998887643 3323345678899999998875433 2  3455553

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=3.3e-07  Score=89.82  Aligned_cols=201  Identities=18%  Similarity=0.146  Sum_probs=114.2

Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEe-CCC--eEEEEeCCCCeeEEEeecCCceEEEEEecCcceee
Q 010816          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDC--TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~-~dg--~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  296 (500)
                      .+.++|...... ..+..+...+.+..|+|||. |+..+ .++  .|.+||+.+++.... ...........++|+    
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPD----  272 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPD----  272 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCC----
Confidence            566667644332 23334556778889999984 44433 333  588889887764322 111112223445544    


Q ss_pred             eccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCCe--EEEEcCCCCCCCceeeecccCcEEEEEECCCCC
Q 010816          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (500)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~~--v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~  373 (500)
                                                      +..+ ++.+.++.  |+++|+...  ....+..+.......+|+|||+
T Consensus       273 --------------------------------G~~La~~~~~~g~~~Iy~~dl~tg--~~~~lt~~~~~~~~p~wSpDG~  318 (448)
T PRK04792        273 --------------------------------GKKLALVLSKDGQPEIYVVDIATK--ALTRITRHRAIDTEPSWHPDGK  318 (448)
T ss_pred             --------------------------------CCEEEEEEeCCCCeEEEEEECCCC--CeEECccCCCCccceEECCCCC
Confidence                                            2334 34555664  666776533  2334445555567789999999


Q ss_pred             EEEEEeC-CC--cEEEEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816          374 WVASASF-DK--SIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (500)
Q Consensus       374 ~lasgs~-Dg--~i~lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~  449 (500)
                      .|+..+. ++  .|+++|+.+++.... +.++.                             ....+|+|||++|+..+.
T Consensus       319 ~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~-----------------------------~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        319 SLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ-----------------------------NLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             EEEEEECCCCCceEEEEECCCCCEEEEecCCCC-----------------------------CcCeeECCCCCEEEEEEe
Confidence            8876654 33  466677777654322 11110                             011268999999887665


Q ss_pred             C-C--cEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          450 D-S--TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       450 d-~--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      + +  .|.++|+.+++... +.... ......|+|||+.|+..+.+
T Consensus       370 ~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        370 TNGKFNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             cCCceEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEec
Confidence            3 4  45567877765432 22211 12245799999998765543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.94  E-value=5e-08  Score=84.50  Aligned_cols=289  Identities=18%  Similarity=0.306  Sum_probs=161.8

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc-e----eEEecCCC------------CCEEEEEEcCCC--CEEEEE
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-P----MFKCTGHK------------NWVLCIAWSADG--KHLVSG  168 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~-~----~~~~~~h~------------~~v~~v~~s~~~--~~l~s~  168 (500)
                      .+.|+++.|...|.+||+|...|.|.++.-+... +    +..+++|+            ..|..+.|-.++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            5679999999999999999999999999765322 1    12244553            347788887654  356677


Q ss_pred             eCCCeEEEEeCCCCCcccccccCc--------ccceEEEEe--eeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC
Q 010816          169 SKAGELQCWDPQTGKPSGNPLSGH--------KKWITGISW--EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG  238 (500)
Q Consensus       169 ~~d~~i~~wd~~~~~~~~~~~~~~--------~~~v~~~~~--~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~  238 (500)
                      +.|++|++|.+.........-...        .+++++..-  .|. .+ ....++++ .-  .|+|          -..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lpr-ls-~hd~iiaa-~p--~rvy----------aNa  170 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPR-LS-EHDEIIAA-KP--CRVY----------ANA  170 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccc-cc-ccceEEEe-cc--ceec----------ccc
Confidence            899999999876442110000000        011111000  000 00 00011111 10  0111          246


Q ss_pred             ccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816          239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (500)
Q Consensus       239 h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (500)
                      |..-+.++.+++|...+..+.|=.|.+|++.-..                                              
T Consensus       171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D----------------------------------------------  204 (460)
T COG5170         171 HPYHINSISFNSDKETLLSADDLRINLWNLEIID----------------------------------------------  204 (460)
T ss_pred             ceeEeeeeeecCchheeeeccceeeeeccccccC----------------------------------------------
Confidence            7778888999888777777788889999864211                                              


Q ss_pred             HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEE-
Q 010816          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVA-  396 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~-  396 (500)
                                          +...|-|+..     ..+..-...|++..|+|. .+.+.-++..|.|++-|++...+.. 
T Consensus       205 --------------------~sFnIVDiKP-----~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn  259 (460)
T COG5170         205 --------------------GSFNIVDIKP-----HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN  259 (460)
T ss_pred             --------------------CceEEEeccC-----ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence                                1111111110     011122234666778884 4666777788999999987433211 


Q ss_pred             ---EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc-cccccccCc--
Q 010816          397 ---VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGH--  470 (500)
Q Consensus       397 ---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h--  470 (500)
                         .+.....++.               .........+++.+.|+++|+++++-+. -+|+|||.+.. .++++.+-|  
T Consensus       260 ~~klfe~~~D~v~---------------~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~  323 (460)
T COG5170         260 SKKLFELTIDGVD---------------VDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD  323 (460)
T ss_pred             chhhhhhccCccc---------------chhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHH
Confidence               0110001100               0000111234555678999999987654 47999998753 334444333  


Q ss_pred             ----------ccCE---EEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          471 ----------ADEV---FAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       471 ----------~~~V---~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                                .+.|   +.+.||.|.+.+.+|+-.+...++
T Consensus       324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence                      2344   457899998888888877665554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.92  E-value=3.6e-08  Score=92.27  Aligned_cols=174  Identities=18%  Similarity=0.319  Sum_probs=125.3

Q ss_pred             eEeEEe-cccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe------cCCCC-----CEEEEEE
Q 010816           91 VFRIRP-VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC------TGHKN-----WVLCIAW  158 (500)
Q Consensus        91 ~~~~~~-~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~------~~h~~-----~v~~v~~  158 (500)
                      ++|++. .++.+..+.-..+.+++|.+++-..+||+|+.||.|..||..+......+      ..|.+     .|+++.|
T Consensus       157 vYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F  236 (703)
T KOG2321|consen  157 VYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKF  236 (703)
T ss_pred             eEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEe
Confidence            444432 23344555566789999999999999999999999999998765433322      12333     4999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC
Q 010816          159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG  238 (500)
Q Consensus       159 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~  238 (500)
                      +.+|-.+++|..+|.+.|||+++.++....-.+..-++..+.|.+..   ....+++. ....++|||-.+++....+..
T Consensus       237 ~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~---~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp  312 (703)
T KOG2321|consen  237 RDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD---QQNKVVSM-DKRILKIWDECTGKPMASIEP  312 (703)
T ss_pred             cCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC---CCceEEec-chHHhhhcccccCCceeeccc
Confidence            99999999999999999999999887654445556778889997742   22344443 346889999999987766544


Q ss_pred             ccccEEEEEeCC-CCeEEEEeCCCeEEEEeCC
Q 010816          239 HTLAVTCVKWGG-DGVIYTGSQDCTIKVWETT  269 (500)
Q Consensus       239 h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~  269 (500)
                      . ..+..+++-+ .|.+++|-.+..+..|=+.
T Consensus       313 t-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  313 T-SDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             c-CCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            3 3366666655 4678888887777666443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.91  E-value=2.8e-08  Score=89.13  Aligned_cols=161  Identities=17%  Similarity=0.306  Sum_probs=110.4

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce---eEEecCCCCCEEEEEEcCCCCEEE---EEeCCCeEEEEeCCCCCc
Q 010816          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSADGKHLV---SGSKAGELQCWDPQTGKP  184 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~v~~s~~~~~l~---s~~~d~~i~~wd~~~~~~  184 (500)
                      +..+..+|.+++||.+..+....+.++....+   +.....-...-.++.|-.+...+.   .++....+.+|....+..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            44456778888888888777776776654332   111111111223334433333333   355566777777665443


Q ss_pred             ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-ecCccccEEEEEeCCCCeEEEEeCCCeE
Q 010816          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDGVIYTGSQDCTI  263 (500)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~l~t~~~dg~i  263 (500)
                        .+.-||-..+..+.|+|     +.+.++++..|..||+-....-..+.. .-||..-|..++..++..|++||.|+++
T Consensus       145 --~~~lGhvSml~dVavS~-----D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tl  217 (390)
T KOG3914|consen  145 --EPILGHVSMLLDVAVSP-----DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTL  217 (390)
T ss_pred             --chhhhhhhhhheeeecC-----CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcE
Confidence              46789999999999987     447899999999999876543333322 3489999999999888889999999999


Q ss_pred             EEEeCCCCeeEEEee
Q 010816          264 KVWETTQGKLIRELK  278 (500)
Q Consensus       264 ~lwd~~~~~~~~~~~  278 (500)
                      ++||+.+|+.+.++.
T Consensus       218 r~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  218 RLWDITSGKLLDTCD  232 (390)
T ss_pred             EEEecccCCcccccc
Confidence            999999999886543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.89  E-value=1.7e-05  Score=75.29  Aligned_cols=234  Identities=15%  Similarity=0.253  Sum_probs=126.7

Q ss_pred             CCceEEEEeC----CCcEEEEECCCC--eE--EEEecCccccEEEEEeCCCCe-EEEEe-CCCeEEEEeCCC-CeeEEEe
Q 010816          209 PCRRFVSASK----DGDARIWDVSLR--KC--VICLSGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVWETTQ-GKLIREL  277 (500)
Q Consensus       209 ~~~~~~s~s~----dg~v~iwd~~~~--~~--~~~~~~h~~~v~~~~~~~~~~-l~t~~-~dg~i~lwd~~~-~~~~~~~  277 (500)
                      +.+++.+...    ++.|..|++...  +.  +.........-..++.++++. |+++. .+|+|.++++.. |......
T Consensus        47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~  126 (345)
T PF10282_consen   47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV  126 (345)
T ss_dssp             TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred             CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence            3445555544    578888887653  32  222221122234577777763 44444 689999999876 4433221


Q ss_pred             --ecC-----------CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE-EEEeeCCCeEEE
Q 010816          278 --KGH-----------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDFTMFL  343 (500)
Q Consensus       278 --~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~s~d~~v~~  343 (500)
                        ..+           ..-..++.++|+                                    +.. +++.-....|++
T Consensus       127 ~~~~~~g~g~~~~rq~~~h~H~v~~~pd------------------------------------g~~v~v~dlG~D~v~~  170 (345)
T PF10282_consen  127 QTVRHEGSGPNPDRQEGPHPHQVVFSPD------------------------------------GRFVYVPDLGADRVYV  170 (345)
T ss_dssp             EEEESEEEESSTTTTSSTCEEEEEE-TT------------------------------------SSEEEEEETTTTEEEE
T ss_pred             eecccCCCCCcccccccccceeEEECCC------------------------------------CCEEEEEecCCCEEEE
Confidence              101           111223333332                                    223 333334457888


Q ss_pred             EcCCCCCCCce---e-eecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCC--CCceE--EEEeCCcccEEEEEeeeee
Q 010816          344 WEPAVSKQPKT---R-MTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGT--TGKFV--AVFRGHVGPVYQIRFELIY  414 (500)
Q Consensus       344 wd~~~~~~~~~---~-~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~--~~~~~--~~~~~h~~~v~~~~~~~~~  414 (500)
                      |+.........   . ........+.+.|+|+|+++... -.++.|.++++.  ++...  ......             
T Consensus       171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~-------------  237 (345)
T PF10282_consen  171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL-------------  237 (345)
T ss_dssp             EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC-------------
T ss_pred             EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec-------------
Confidence            87654432111   1 12334557899999999887555 457889999877  44321  111100             


Q ss_pred             eecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECC--Cccc--cccccCcccCEEEEEEcCCCCEEEEE
Q 010816          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIR--TQKL--KQDLPGHADEVFAVDWSPDGEKVASG  489 (500)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~--~~~~--~~~~~~h~~~V~~l~~s~dg~~l~s~  489 (500)
                          +..    .......+.+.++|||++|+++. .++.|-+|++.  ++++  +..++.....-..+.++|+|++|+++
T Consensus       238 ----~~~----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va  309 (345)
T PF10282_consen  238 ----PEG----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA  309 (345)
T ss_dssp             ----ETT----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred             ----ccc----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence                000    00011234456799999988876 45689999983  2333  22333223346789999999999987


Q ss_pred             e-CCCcEEEec
Q 010816          490 G-KDRVLKLWM  499 (500)
Q Consensus       490 ~-~D~~v~iW~  499 (500)
                      . .++.|.+|+
T Consensus       310 ~~~s~~v~vf~  320 (345)
T PF10282_consen  310 NQDSNTVSVFD  320 (345)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ecCCCeEEEEE
Confidence            6 456787764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.88  E-value=2.8e-05  Score=71.83  Aligned_cols=134  Identities=14%  Similarity=0.149  Sum_probs=99.1

Q ss_pred             CCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC-cEEEEeCCCCceEEEEeCCcccEE
Q 010816          328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVY  406 (500)
Q Consensus       328 ~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg-~i~lwd~~~~~~~~~~~~h~~~v~  406 (500)
                      +++.++.-|. |..++.+....   .....+|...|.-..+..+++-++.|..|| .+-|||..+++... +...-+.|.
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~---~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~  405 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDG---YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIE  405 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCC---eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceE
Confidence            4556655554 44555543322   123346777798889998888999999999 89999998887543 334444555


Q ss_pred             EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEE
Q 010816          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV  486 (500)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l  486 (500)
                      .+                           ..+|+|++++.+.....+-+.|+.+++....-+...+-|+.++|||++++|
T Consensus       406 av---------------------------~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~i  458 (668)
T COG4946         406 AV---------------------------KVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWI  458 (668)
T ss_pred             EE---------------------------EEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeE
Confidence            44                           348999999999999999999999988765444556789999999999999


Q ss_pred             EEEeCCC
Q 010816          487 ASGGKDR  493 (500)
Q Consensus       487 ~s~~~D~  493 (500)
                      |-+=-+|
T Consensus       459 AYafP~g  465 (668)
T COG4946         459 AYAFPEG  465 (668)
T ss_pred             EEecCcc
Confidence            9886665

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.88  E-value=4.1e-06  Score=90.08  Aligned_cols=273  Identities=16%  Similarity=0.183  Sum_probs=152.7

Q ss_pred             EEEEcCC-CCeEEEEeCCCcEEEEeCCCCceeEEecC--C------------CCCEEEEEEcCCCCEEEEEe-CCCeEEE
Q 010816          113 SVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKCTG--H------------KNWVLCIAWSADGKHLVSGS-KAGELQC  176 (500)
Q Consensus       113 ~~~~sp~-~~~lat~~~d~~i~iwd~~~~~~~~~~~~--h------------~~~v~~v~~s~~~~~l~s~~-~d~~i~~  176 (500)
                      .++++++ ++..++-+..+.|++||..+.. +....+  .            -.....+++.++++.|+.+. ..+.|+.
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            5788875 5566666778899999986543 222211  1            12357889999888766654 4577999


Q ss_pred             EeCCCCCccccc--------ccCcc-------cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC---
Q 010816          177 WDPQTGKPSGNP--------LSGHK-------KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---  238 (500)
Q Consensus       177 wd~~~~~~~~~~--------~~~~~-------~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~---  238 (500)
                      +|..++......        ..+..       ..-.++++.|.    .+..+++.+.++.|++||...+.... +.+   
T Consensus       651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~----~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~  725 (1057)
T PLN02919        651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV----NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGY  725 (1057)
T ss_pred             EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC----CCeEEEEECCCCeEEEEECCCCeEEE-EecCCc
Confidence            998765421100        00000       01124455441    33567888888999999988765432 111   


Q ss_pred             ------cc------ccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCC
Q 010816          239 ------HT------LAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG  304 (500)
Q Consensus       239 ------h~------~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  304 (500)
                            +.      .....+++++++  .+++.+.++.|++||+.++.... +.+ ...+.     +             
T Consensus       726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~-~~g-g~~~~-----~-------------  785 (1057)
T PLN02919        726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL-LAG-GDPTF-----S-------------  785 (1057)
T ss_pred             cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE-EEe-ccccc-----C-------------
Confidence                  11      123457888876  34455667899999987654211 000 00000     0             


Q ss_pred             CCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcE
Q 010816          305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI  384 (500)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i  384 (500)
                                              ....-.|..|+.          .... ...|   ...++++++|.++++-+.++.|
T Consensus       786 ------------------------~~l~~fG~~dG~----------g~~~-~l~~---P~Gvavd~dG~LYVADs~N~rI  827 (1057)
T PLN02919        786 ------------------------DNLFKFGDHDGV----------GSEV-LLQH---PLGVLCAKDGQIYVADSYNHKI  827 (1057)
T ss_pred             ------------------------cccccccCCCCc----------hhhh-hccC---CceeeEeCCCcEEEEECCCCEE
Confidence                                    000000111110          0000 0112   3478999999999999999999


Q ss_pred             EEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc
Q 010816          385 KLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL  463 (500)
Q Consensus       385 ~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~  463 (500)
                      ++||..++...... +....-    +.        .+. .....-.....++++++|+++++-+.++.|++||+.+++.
T Consensus       828 rviD~~tg~v~tia-G~G~~G----~~--------dG~-~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        828 KKLDPATKRVTTLA-GTGKAG----FK--------DGK-ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEECCCCeEEEEe-ccCCcC----CC--------CCc-ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            99999887665332 211100    00        000 0000001123346789999988888999999999988654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.88  E-value=4.4e-06  Score=72.39  Aligned_cols=246  Identities=17%  Similarity=0.201  Sum_probs=132.9

Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEeCCCC--ceeEEecCCCC---CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          114 VAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKN---WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       114 ~~~sp~~~~lat~~~d~~i~iwd~~~~--~~~~~~~~h~~---~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      ++.+++|+.||.- .|..|.|=..++.  ..+..++.+.+   .=+.++||||+.+||.+...|+|+++|+..... ...
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEc
Confidence            5677899988875 5666777654432  12223332222   236799999999999999999999999864322 111


Q ss_pred             c------cCcccceEEEEeeeeecCCC-CceEEEEeCCCcEEEEECCCC-----eEE--EEecC-ccccEEEEEeCCCC-
Q 010816          189 L------SGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLR-----KCV--ICLSG-HTLAVTCVKWGGDG-  252 (500)
Q Consensus       189 ~------~~~~~~v~~~~~~~~~~~~~-~~~~~s~s~dg~v~iwd~~~~-----~~~--~~~~~-h~~~v~~~~~~~~~-  252 (500)
                      .      ......|.++.|.+...+.. +..++.-..+|.++-|-+..+     +..  ..+.. +...|.++.|++.. 
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            1      11234566666655443222 346777778888877765321     222  22333 35689999998874 


Q ss_pred             eEEEEeCC-CeEEEEeCCCCeeEEEeecCCceEEEEEe---cCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816          253 VIYTGSQD-CTIKVWETTQGKLIRELKGHGHWVNSLAL---STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (500)
Q Consensus       253 ~l~t~~~d-g~i~lwd~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (500)
                      .|+.||.. ..-..+..           ....+.+-.+   .|-+.... ..                            
T Consensus       161 LLlVgG~~~~~~~~s~a-----------~~~GLtaWRiL~~~Pyyk~v~-~~----------------------------  200 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKA-----------SSCGLTAWRILSDSPYYKQVT-SS----------------------------  200 (282)
T ss_pred             EEEEeccCCCCCccccc-----------cccCceEEEEcCCCCcEEEcc-cc----------------------------
Confidence            45555432 21000000           0000111000   01000000 00                            


Q ss_pred             CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc
Q 010816          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP  404 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~  404 (500)
                      ++.+...+  .+..+|.+.. .....+....++.|..|..||||.+||+...+|.|.+|++.+.++...++-++.|
T Consensus       201 ~~~~~~~~--~~~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP  273 (282)
T PF15492_consen  201 EDDITASS--KRRGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP  273 (282)
T ss_pred             Cccccccc--cccceeeccc-eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence            00000000  0011221110 0000111234577999999999999999999999999999988877776655554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.80  E-value=1.8e-05  Score=73.48  Aligned_cols=236  Identities=14%  Similarity=0.107  Sum_probs=131.5

Q ss_pred             EcCCCCeEEEEeC----------CCcEEEEeCCCCceeEEecCCCC-------CEEEEEEcCCCCEEEEEe-C-CCeEEE
Q 010816          116 FSPDGRQLASGSG----------DTTVRLWDLNTQTPMFKCTGHKN-------WVLCIAWSADGKHLVSGS-K-AGELQC  176 (500)
Q Consensus       116 ~sp~~~~lat~~~----------d~~i~iwd~~~~~~~~~~~~h~~-------~v~~v~~s~~~~~l~s~~-~-d~~i~~  176 (500)
                      ++||++.|+.+..          +..|.+||..+.+.+..+.-...       ....++++|||++|+... . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998887755          78999999999988876653222       234788999999998765 3 689999


Q ss_pred             EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEE----EEecCccccEEEE-EeCC
Q 010816          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCV----ICLSGHTLAVTCV-KWGG  250 (500)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~----~~~~~h~~~v~~~-~~~~  250 (500)
                      .|+.+++.....-..-...+..  .       ....+..-+.||......+.. ++..    ..+.+...++..- .|.+
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~--t-------~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~  203 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFP--T-------ANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN  203 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEE--e-------cCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc
Confidence            9999887654321111111100  0       001222233444443332221 1110    0111101111000 2233


Q ss_pred             -CCeEEEEeCCCeEEEEeCCCCee-----EEEeecC-------CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHH
Q 010816          251 -DGVIYTGSQDCTIKVWETTQGKL-----IRELKGH-------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (500)
Q Consensus       251 -~~~l~t~~~dg~i~lwd~~~~~~-----~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (500)
                       ++..+..+..|+|.+-|+.....     ...+...       .....-++++++                         
T Consensus       204 ~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d-------------------------  258 (352)
T TIGR02658       204 KSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA-------------------------  258 (352)
T ss_pred             CCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC-------------------------
Confidence             56555555559999999654321     1111100       000111333322                         


Q ss_pred             HHhhhhhcCCCCcEEEE-ee---------CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC-EEEEEe-CCCcEE
Q 010816          318 LERYNKIKGNAPERLVS-GS---------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS-FDKSIK  385 (500)
Q Consensus       318 ~~~~~~~~~~~~~~~~s-~s---------~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~lasgs-~Dg~i~  385 (500)
                                 +.++.. ..         ..+.|.++|....+.......+  ..+..++++|||+ +|.+.. .++.|.
T Consensus       259 -----------g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~Vs  325 (352)
T TIGR02658       259 -----------RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLY  325 (352)
T ss_pred             -----------CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEE
Confidence                       122332 21         1246888887655444333444  3688999999999 777665 578899


Q ss_pred             EEeCCCCceEEEE
Q 010816          386 LWNGTTGKFVAVF  398 (500)
Q Consensus       386 lwd~~~~~~~~~~  398 (500)
                      ++|..+++.+...
T Consensus       326 ViD~~t~k~i~~i  338 (352)
T TIGR02658       326 IFDAETGKELSSV  338 (352)
T ss_pred             EEECcCCeEEeee
Confidence            9999999988776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.80  E-value=6.8e-05  Score=71.14  Aligned_cols=245  Identities=17%  Similarity=0.218  Sum_probs=141.5

Q ss_pred             EEEEEEcCCCCeEEEEeC----CCcEEEEeCCCC--ce--eEEecCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCC
Q 010816          111 VLSVAFSPDGRQLASGSG----DTTVRLWDLNTQ--TP--MFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQT  181 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~----d~~i~iwd~~~~--~~--~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~~wd~~~  181 (500)
                      -..++++|++++|.+...    ++.|..|++...  ..  +............++++|++++|+++.+ +|.|.++++..
T Consensus        39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence            445789999999998876    578999988754  22  2222223445677999999999999875 79999999876


Q ss_pred             -CCccccc-cc-----------CcccceEEEEeeeeecCCCCceEEE-EeCCCcEEEEECCCCe--EE--EEec-Ccccc
Q 010816          182 -GKPSGNP-LS-----------GHKKWITGISWEPVHLNAPCRRFVS-ASKDGDARIWDVSLRK--CV--ICLS-GHTLA  242 (500)
Q Consensus       182 -~~~~~~~-~~-----------~~~~~v~~~~~~~~~~~~~~~~~~s-~s~dg~v~iwd~~~~~--~~--~~~~-~h~~~  242 (500)
                       |...... ..           .......++.+.|     +++.+++ .-....|++|++....  ..  ..+. .....
T Consensus       119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-----dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G  193 (345)
T PF10282_consen  119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-----DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG  193 (345)
T ss_dssp             TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-----TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred             CcccceeeeecccCCCCCcccccccccceeEEECC-----CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence             3221110 00           0112234455544     4444444 3334578899886554  21  1111 22234


Q ss_pred             EEEEEeCCCCe--EEEEeCCCeEEEEeCC--CCee--EEEeecC------CceEEEEEecCcceeeeccccCCCCCCCCH
Q 010816          243 VTCVKWGGDGV--IYTGSQDCTIKVWETT--QGKL--IRELKGH------GHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (500)
Q Consensus       243 v~~~~~~~~~~--l~t~~~dg~i~lwd~~--~~~~--~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (500)
                      -+.+.|++++.  .++...+++|.++++.  ++..  ++.+...      ......+.++++                  
T Consensus       194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd------------------  255 (345)
T PF10282_consen  194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD------------------  255 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT------------------
T ss_pred             CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC------------------
Confidence            56788999873  3456678899999887  4432  2222110      012334444443                  


Q ss_pred             HHHHHHHHHhhhhhcCCCCcE-EEEeeCCCeEEEEcCCCCCCCce---eeecccCcEEEEEECCCCCEEEEEe-CCCcEE
Q 010816          311 EEMKKAALERYNKIKGNAPER-LVSGSDDFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASAS-FDKSIK  385 (500)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~-~~s~s~d~~v~~wd~~~~~~~~~---~~~~h~~~v~~l~~sp~g~~lasgs-~Dg~i~  385 (500)
                                        +.+ .++.....+|.+|++........   .........+.++++|+|++|+++. .++.|.
T Consensus       256 ------------------g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~  317 (345)
T PF10282_consen  256 ------------------GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS  317 (345)
T ss_dssp             ------------------SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             ------------------CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence                              223 34445677888998743322211   2222234578999999999998776 467899


Q ss_pred             EEeC--CCCceEE
Q 010816          386 LWNG--TTGKFVA  396 (500)
Q Consensus       386 lwd~--~~~~~~~  396 (500)
                      +|++  .+|.+..
T Consensus       318 vf~~d~~tG~l~~  330 (345)
T PF10282_consen  318 VFDIDPDTGKLTP  330 (345)
T ss_dssp             EEEEETTTTEEEE
T ss_pred             EEEEeCCCCcEEE
Confidence            9865  5676543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.80  E-value=6.7e-05  Score=79.43  Aligned_cols=271  Identities=16%  Similarity=0.217  Sum_probs=142.8

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCC----C---------C--cee--------EE-------------------
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLN----T---------Q--TPM--------FK-------------------  145 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~----~---------~--~~~--------~~-------------------  145 (500)
                      ...|.+++||||+.+||...+++++.+-+-.    .         +  +++        ..                   
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            4589999999999999999999888775321    0         0  000        00                   


Q ss_pred             ------ecCCCCCEEEEEEcCCCCEEEEEeC---C---CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceE
Q 010816          146 ------CTGHKNWVLCIAWSADGKHLVSGSK---A---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF  213 (500)
Q Consensus       146 ------~~~h~~~v~~v~~s~~~~~l~s~~~---d---~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  213 (500)
                            +. +...-..++|-.||.++|+.+.   .   ..+|+|+.+ |.... ....-.+--.+++|.|..     ..+
T Consensus       200 ~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~s-tSE~v~gLe~~l~WrPsG-----~lI  271 (928)
T PF04762_consen  200 KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQS-TSEPVDGLEGALSWRPSG-----NLI  271 (928)
T ss_pred             ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEe-ccccCCCccCCccCCCCC-----CEE
Confidence                  11 2334567899999999998764   2   479999976 43211 111111222457888743     455


Q ss_pred             EEEeC---CCcEEEEEC---CCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeE--EEeecC-CceE
Q 010816          214 VSASK---DGDARIWDV---SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI--RELKGH-GHWV  284 (500)
Q Consensus       214 ~s~s~---dg~v~iwd~---~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~--~~~~~~-~~~v  284 (500)
                      ++...   ...|.+|.-   +.+.....+......|..+.|++|+.+++......|.+|-..+....  +++... ...+
T Consensus       272 A~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~  351 (928)
T PF04762_consen  272 ASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESV  351 (928)
T ss_pred             EEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCC
Confidence            55432   245556652   22222222224556789999999987665555556999987765532  222211 2223


Q ss_pred             EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC-CCCcEEEEeeCCC-eEEEEcCCCCC--CCc-eeeecc
Q 010816          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG-NAPERLVSGSDDF-TMFLWEPAVSK--QPK-TRMTGH  359 (500)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~s~d~-~v~~wd~~~~~--~~~-~~~~~h  359 (500)
                      ..+.|++..+.........+......-.      .....-.+ .+.+.-..+--|| ++++-..+...  .|. .....-
T Consensus       352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~  425 (928)
T PF04762_consen  352 NFVKWDPEKPLRLHVLTSNGQYEIYDFA------WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL  425 (928)
T ss_pred             CceEECCCCCCEEEEEecCCcEEEEEEE------EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence            3466776543322111111100000000      00000000 0001111111222 23333322211  111 112233


Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (500)
Q Consensus       360 ~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~  392 (500)
                      +..|.+++|++++..+|+-..||.|.+|.....
T Consensus       426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            577999999999988999999999999986543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.79  E-value=1.1e-08  Score=62.38  Aligned_cols=37  Identities=54%  Similarity=0.997  Sum_probs=34.5

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD  136 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd  136 (500)
                      +..++.+|.+.|.+++|+|++.+|++|+.|++|+|||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4567889999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=4.7e-06  Score=78.17  Aligned_cols=90  Identities=21%  Similarity=0.307  Sum_probs=60.6

Q ss_pred             cEEEEEEcCCCCeEEEEeC-----------CCcEEEEeCCCCceeEEecCCCC--CE-EEEEEcCCCCEEEEEeCCCeEE
Q 010816          110 AVLSVAFSPDGRQLASGSG-----------DTTVRLWDLNTQTPMFKCTGHKN--WV-LCIAWSADGKHLVSGSKAGELQ  175 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~-----------d~~i~iwd~~~~~~~~~~~~h~~--~v-~~v~~s~~~~~l~s~~~d~~i~  175 (500)
                      .|.-+.|||+.++|+|-+.           ...++|||+.+|..+..+.....  .+ .-..||.|++++|.-.. ..|.
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis  329 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS  329 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence            4888999999999998752           25799999999987765543211  12 23689999999987665 5788


Q ss_pred             EEeCCCCCcccccccCc---ccceEEEEeeee
Q 010816          176 CWDPQTGKPSGNPLSGH---KKWITGISWEPV  204 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~---~~~v~~~~~~~~  204 (500)
                      ||+..+-..    +..-   -..|....|+|.
T Consensus       330 IyEtpsf~l----ld~Kslki~gIr~FswsP~  357 (698)
T KOG2314|consen  330 IYETPSFML----LDKKSLKISGIRDFSWSPT  357 (698)
T ss_pred             EEecCceee----ecccccCCccccCcccCCC
Confidence            887654211    1111   123556677774

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.76  E-value=1.5e-08  Score=61.86  Aligned_cols=38  Identities=34%  Similarity=0.785  Sum_probs=35.4

Q ss_pred             cccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          462 KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       462 ~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +++.++.+|.+.|++++|+|++..|++++.|++|++|+
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45677889999999999999999999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.75  E-value=8.5e-06  Score=78.97  Aligned_cols=262  Identities=12%  Similarity=0.086  Sum_probs=150.2

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCccc-ce
Q 010816          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC-IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK-WI  196 (500)
Q Consensus       119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~-v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-~v  196 (500)
                      ++..++.++.++.+.-+|.++++.+....... .+.+ ...  .+..++.+..++.+..+|.++|+..-........ ..
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  195 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL  195 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence            35567778889999999999998877654322 2221 111  2456777888999999999999764322111000 00


Q ss_pred             EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc----c---cEEEEEeC---CCCeEEEEeCCCeEEEE
Q 010816          197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT----L---AVTCVKWG---GDGVIYTGSQDCTIKVW  266 (500)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~----~---~v~~~~~~---~~~~l~t~~~dg~i~lw  266 (500)
                      .. .-.|..   ....++.++.++.+...|..+++.+....-..    .   ....+..+   .++.++.++.+|.+.-+
T Consensus       196 ~~-~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al  271 (394)
T PRK11138        196 RG-ESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL  271 (394)
T ss_pred             cC-CCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence            00 001211   12356677888999999988887654432100    0   00000011   25678888899999999


Q ss_pred             eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (500)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~  346 (500)
                      |..+|+.+.......  ...+.                                      ..++.++.++.++.+...|.
T Consensus       272 d~~tG~~~W~~~~~~--~~~~~--------------------------------------~~~~~vy~~~~~g~l~ald~  311 (394)
T PRK11138        272 DLRSGQIVWKREYGS--VNDFA--------------------------------------VDGGRIYLVDQNDRVYALDT  311 (394)
T ss_pred             ECCCCCEEEeecCCC--ccCcE--------------------------------------EECCEEEEEcCCCeEEEEEC
Confidence            999998765432110  00000                                      01345777778888888887


Q ss_pred             CCCCCCceee-ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceee
Q 010816          347 AVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV  425 (500)
Q Consensus       347 ~~~~~~~~~~-~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  425 (500)
                      ...+...... ..+. ...+..+  .+..|..++.||.+...|..+|+.+...+-....+..-                 
T Consensus       312 ~tG~~~W~~~~~~~~-~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~-----------------  371 (394)
T PRK11138        312 RGGVELWSQSDLLHR-LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSE-----------------  371 (394)
T ss_pred             CCCcEEEcccccCCC-cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeC-----------------
Confidence            5443211110 0110 1111111  25677888999999999999999876655332222110                 


Q ss_pred             eeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          426 VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       426 ~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                               ..  ..+..|+.++.||.++.++.
T Consensus       372 ---------P~--~~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        372 ---------PV--VADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             ---------CE--EECCEEEEEeCCceEEEEeC
Confidence                     00  12447888899998887753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.75  E-value=8.3e-06  Score=87.75  Aligned_cols=163  Identities=11%  Similarity=0.077  Sum_probs=96.2

Q ss_pred             cEEEEeeCCCeEEEEcCCCCCCCce-------eeec------ccCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceE
Q 010816          330 ERLVSGSDDFTMFLWEPAVSKQPKT-------RMTG------HQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGKFV  395 (500)
Q Consensus       330 ~~~~s~s~d~~v~~wd~~~~~~~~~-------~~~~------h~~~v~~l~~sp~g~-~lasgs~Dg~i~lwd~~~~~~~  395 (500)
                      ..+++.+.++.|++||.........       ...+      .-.....++++|+|+ ++++-+.++.|++||+.++...
T Consensus       696 ~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~  775 (1057)
T PLN02919        696 KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR  775 (1057)
T ss_pred             eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            4556777788899998643321000       0001      112356799999998 5556667799999999887542


Q ss_pred             EEEeCCcc-cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc-------
Q 010816          396 AVFRGHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-------  467 (500)
Q Consensus       396 ~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-------  467 (500)
                      ....+... +.....+...      .... ....-.....++++++|.++++-+.++.|++||..++......       
T Consensus       776 ~~~gg~~~~~~~l~~fG~~------dG~g-~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~  848 (1057)
T PLN02919        776 LLAGGDPTFSDNLFKFGDH------DGVG-SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF  848 (1057)
T ss_pred             EEEecccccCcccccccCC------CCch-hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC
Confidence            21111100 0000000000      0000 0000011223467899998888889999999999876653211       


Q ss_pred             ------cCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          468 ------PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       468 ------~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                            .+.......++++++|+.+++-+.+++|++|+
T Consensus       849 ~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        849 KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence                  11223567899999999889989999999996

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.74  E-value=2e-07  Score=78.90  Aligned_cols=116  Identities=20%  Similarity=0.284  Sum_probs=79.7

Q ss_pred             CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceEEEEe--CCcc--
Q 010816          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFR--GHVG--  403 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~--~h~~--  403 (500)
                      ...+++|+.||.+-+||.+....+...+..|+..++.+.|+| ++..|.+++.||.+..||..+.-+-...+  +|..  
T Consensus       192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WL  271 (319)
T KOG4714|consen  192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWL  271 (319)
T ss_pred             ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccc
Confidence            456888999999999999888778888999999999999999 67899999999999999987522211111  1111  


Q ss_pred             ---cEEE-EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816          404 ---PVYQ-IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD  457 (500)
Q Consensus       404 ---~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd  457 (500)
                         ++.+ +..+.+.             .+...++.+|.--|..|++|+.-+.|++++
T Consensus       272 sgD~v~s~i~i~~ll-------------~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  272 SGDPVKSRIEITSLL-------------PSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cCCcccceEeeeccc-------------cccceeeeeeeccCceEEeccccceEEEec
Confidence               1111 1111100             011223334555678899999888888875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=4.7e-08  Score=91.09  Aligned_cols=204  Identities=14%  Similarity=0.259  Sum_probs=128.8

Q ss_pred             EEecCccccEEEEE-eCCCCeEEEEeCCCeEEEEeCCC-------CeeEEEeecCCceEEEEEecCcceeeeccccCCCC
Q 010816          234 ICLSGHTLAVTCVK-WGGDGVIYTGSQDCTIKVWETTQ-------GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (500)
Q Consensus       234 ~~~~~h~~~v~~~~-~~~~~~l~t~~~dg~i~lwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (500)
                      ..+.||+..|..++ .+.++.+++++.|.+|++|.++.       ..+..++..|..+|.++.+-.+             
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-------------  795 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-------------  795 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-------------
Confidence            34678988888764 34556799999999999998753       1244556677777777655432             


Q ss_pred             CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee----ecccCcEEEEEECCCCCEEEEE-eC
Q 010816          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNHVYFSPDGQWVASA-SF  380 (500)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~----~~h~~~v~~l~~sp~g~~lasg-s~  380 (500)
                                               .-...|.|+.+.+||+..........    .+....|.|+- +-+...+..| +.
T Consensus       796 -------------------------lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsa  849 (1034)
T KOG4190|consen  796 -------------------------LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSA  849 (1034)
T ss_pred             -------------------------cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccc
Confidence                                     11345678999999986543322111    11122344432 2234444444 77


Q ss_pred             CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       381 Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                      ..+|+++|.+.++....++..+.+...                      .....++..+.|..+|.|=..|.|-+.|.++
T Consensus       850 eSTVKl~DaRsce~~~E~kVcna~~Pn----------------------a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  850 ESTVKLFDARSCEWTCELKVCNAPGPN----------------------ALTRAIAVADKGNKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             hhhheeeecccccceeeEEeccCCCCc----------------------hheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence            899999999999887766643222110                      0011124578999999999999999999999


Q ss_pred             ccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE-ec
Q 010816          461 QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL-WM  499 (500)
Q Consensus       461 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i-W~  499 (500)
                      |+.+..++.-.-....++ -|..+.|+....|.++-+ |.
T Consensus       908 G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWh  946 (1034)
T KOG4190|consen  908 GKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWH  946 (1034)
T ss_pred             CceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeeh
Confidence            998776654433334443 244456666666666666 54

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.68  E-value=5.4e-07  Score=86.79  Aligned_cols=252  Identities=18%  Similarity=0.270  Sum_probs=151.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (500)
Q Consensus       150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~  229 (500)
                      .....|++|+.+..++|+|+.||.+++-.+.+...-.     ....                 ++..+           +
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~-----~~~g-----------------laa~s-----------n   60 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDL-----NKSG-----------------LAAAS-----------N   60 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcc-----cccc-----------------ccccc-----------c
Confidence            3457899999999999999999999999876543211     0000                 11111           1


Q ss_pred             CeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEe--ecCCceEEEEEecCcceeeeccccCCCCC
Q 010816          230 RKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIREL--KGHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (500)
Q Consensus       230 ~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  306 (500)
                      -..-+++.||+..|.-+.|+.+.. |-+...+|.|.+|-+-.|....++  ......|.++++..++.-....+.     
T Consensus        61 LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe-----  135 (1189)
T KOG2041|consen   61 LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE-----  135 (1189)
T ss_pred             cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc-----
Confidence            111234679999999999987654 666778999999998888765444  234556777777665321111110     


Q ss_pred             CCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEE
Q 010816          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL  386 (500)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~l  386 (500)
                                            ...++.|+-||. +||.-.        +.+.  ....+.|++|.+.+..+-..|.+.+
T Consensus       136 ----------------------DGavIVGsvdGN-RIwgKe--------Lkg~--~l~hv~ws~D~~~~Lf~~ange~hl  182 (1189)
T KOG2041|consen  136 ----------------------DGAVIVGSVDGN-RIWGKE--------LKGQ--LLAHVLWSEDLEQALFKKANGETHL  182 (1189)
T ss_pred             ----------------------cCCEEEEeeccc-eecchh--------cchh--eccceeecccHHHHHhhhcCCcEEE
Confidence                                  113556666665 566422        1111  1346789999998888888899999


Q ss_pred             EeCCCCce--------EE---EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEE
Q 010816          387 WNGTTGKF--------VA---VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV  455 (500)
Q Consensus       387 wd~~~~~~--------~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~i  455 (500)
                      ||-+..-.        +.   .+......+..+.+.             .      ....-..|+.-.||.+-..|.+.|
T Consensus       183 ydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~-------------~------g~~~~v~pdrP~lavcy~nGr~Qi  243 (1189)
T KOG2041|consen  183 YDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN-------------T------GPYQPVPPDRPRLAVCYANGRMQI  243 (1189)
T ss_pred             ecccccHHHhhhhceEEeeeeeecCCCccccceeec-------------c------CccccCCCCCCEEEEEEcCceehh
Confidence            99764211        10   000000011111110             0      000011467788999999998887


Q ss_pred             EECCCc-cccccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816          456 WDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDR  493 (500)
Q Consensus       456 wd~~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~  493 (500)
                      -.-... +..-.-.|  -.|....|+++|..||.+|.|.
T Consensus       244 MR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  244 MRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             hhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcc
Confidence            644332 22111112  3577889999999999998764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.67  E-value=1.7e-05  Score=76.72  Aligned_cols=181  Identities=15%  Similarity=0.115  Sum_probs=105.1

Q ss_pred             cEEEEEeCCCCe--EEEEeC---CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816          242 AVTCVKWGGDGV--IYTGSQ---DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (500)
Q Consensus       242 ~v~~~~~~~~~~--l~t~~~---dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (500)
                      ......|+||+.  ++..+.   +..|.++|+.+|+...... .........++|+..                      
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~----------------------  245 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS----------------------  245 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC----------------------
Confidence            566788999884  443333   3568889998876544332 233334455666531                      


Q ss_pred             HHHhhhhhcCCCCcEEEEeeC--CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC-C--cEEEEeCCC
Q 010816          317 ALERYNKIKGNAPERLVSGSD--DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-K--SIKLWNGTT  391 (500)
Q Consensus       317 ~~~~~~~~~~~~~~~~~s~s~--d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D-g--~i~lwd~~~  391 (500)
                                   ..+++.+.  +..|+++|+....  ...+..+........|+|||+.|+-.+.. +  .|++.|+.+
T Consensus       246 -------------~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~  310 (419)
T PRK04043        246 -------------KLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS  310 (419)
T ss_pred             -------------EEEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence                         12223332  3456666754332  23344444333456899999988766542 3  577778777


Q ss_pred             CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC---------CcEEEEECCCcc
Q 010816          392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD---------STLKVWDIRTQK  462 (500)
Q Consensus       392 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d---------~~v~iwd~~~~~  462 (500)
                      ++.......  +.                            ....|||+|+.|+..+..         ..|.+.|+.+++
T Consensus       311 g~~~rlt~~--g~----------------------------~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        311 GSVEQVVFH--GK----------------------------NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             CCeEeCccC--CC----------------------------cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence            654322110  00                            001689999988876654         367888888776


Q ss_pred             ccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          463 LKQDLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       463 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      .. .+... .......|+|||+.|+..+.+
T Consensus       361 ~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        361 IR-RLTAN-GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             eE-ECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence            53 33322 122357899999988766543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.67  E-value=1e-07  Score=85.70  Aligned_cols=105  Identities=17%  Similarity=0.227  Sum_probs=81.7

Q ss_pred             EEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeee
Q 010816          125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV  204 (500)
Q Consensus       125 t~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~  204 (500)
                      .++....+.+|....+.+. ..-||-.-++.|+|+||+++++++..|.+|++=....--.+....-||+..|..++..+ 
T Consensus       127 kagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-  204 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-  204 (390)
T ss_pred             ecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-
Confidence            3455667778877654433 34589999999999999999999999999999765443333345678999999988654 


Q ss_pred             ecCCCCceEEEEeCCCcEEEEECCCCeEEEEe
Q 010816          205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICL  236 (500)
Q Consensus       205 ~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~  236 (500)
                           ...+++||.|+++++||+++++++.++
T Consensus       205 -----~~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  205 -----NYLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             -----CceeeecCCCCcEEEEecccCCccccc
Confidence                 345899999999999999999887544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=2.3e-06  Score=83.39  Aligned_cols=262  Identities=15%  Similarity=0.143  Sum_probs=165.2

Q ss_pred             eEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-------------eEEEEeCCCe
Q 010816          196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-------------VIYTGSQDCT  262 (500)
Q Consensus       196 v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~l~t~~~dg~  262 (500)
                      -.++.|+|.      +.++-|+. ..|.+-|..+-+.+..+..|...|+.+.|.+..             .|+++.-.|.
T Consensus        18 ~~A~Dw~~~------GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr   90 (1062)
T KOG1912|consen   18 RNAADWSPS------GLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR   90 (1062)
T ss_pred             ccccccCcc------ceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence            456777663      35555554 578888999999999999999999999997522             4677888899


Q ss_pred             EEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEE
Q 010816          263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (500)
Q Consensus       263 i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~  342 (500)
                      |.+||...+..+..+..+..++..+.+-+..                                ....+.++.-....++.
T Consensus        91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~r--------------------------------d~Srd~LlaIh~ss~lv  138 (1062)
T KOG1912|consen   91 IILVDFVLASVINWLSHSNDSVQDLCWVPAR--------------------------------DDSRDVLLAIHGSSTLV  138 (1062)
T ss_pred             EEEEEehhhhhhhhhcCCCcchhheeeeecc--------------------------------CcchheeEEecCCcEEE
Confidence            9999999888888888888888777665421                                01124566666677889


Q ss_pred             EEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCC-------CceEEEEeCCcccEEEEEeeeee
Q 010816          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTT-------GKFVAVFRGHVGPVYQIRFELIY  414 (500)
Q Consensus       343 ~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~  414 (500)
                      +|+...+......-.+| ....|+.+.| |.+.+..-+..|.+-+-+.-.       |+...+-..|...- .+..+...
T Consensus       139 LwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~-~lere~at  216 (1062)
T KOG1912|consen  139 LWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA-HLERETAT  216 (1062)
T ss_pred             EEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh-hhhhhhhc
Confidence            99866554433333333 3456788898 777787777777776665321       22222222222100 00000000


Q ss_pred             eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCC--EEEEEeCC
Q 010816          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE--KVASGGKD  492 (500)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~--~l~s~~~D  492 (500)
                      . ...+.......+......++|+|.-+-++-...-..+.++|++-...+...+-..+.+.-++|-|+++  .|++...|
T Consensus       217 ~-ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~n  295 (1062)
T KOG1912|consen  217 G-NSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSN  295 (1062)
T ss_pred             c-ccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecC
Confidence            0 00000000000001123356788766555556677899999988777776666666677788888754  68999999


Q ss_pred             CcEEEec
Q 010816          493 RVLKLWM  499 (500)
Q Consensus       493 ~~v~iW~  499 (500)
                      |.+.||.
T Consensus       296 G~ltirv  302 (1062)
T KOG1912|consen  296 GRLTIRV  302 (1062)
T ss_pred             CeEEEEE
Confidence            9999984

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.63  E-value=2.7e-05  Score=69.81  Aligned_cols=225  Identities=18%  Similarity=0.118  Sum_probs=128.7

Q ss_pred             CCcEEEEeCCCCceeEEecCC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816          129 DTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (500)
Q Consensus       129 d~~i~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (500)
                      +|+|..||..+++.+....--  .....+. ..++++.+++++.++.|..||..+|+..........  +...   |.  
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~---~~--   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGA---PV--   73 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSG---EE--
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccce---ee--
Confidence            688999999888887765421  1222221 223567888889999999999999975432111100  0000   11  


Q ss_pred             CCCCceEEEEeCCCcEEEEECCCCeEEEEe-cCc----c-ccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecC
Q 010816          207 NAPCRRFVSASKDGDARIWDVSLRKCVICL-SGH----T-LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGH  280 (500)
Q Consensus       207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-~~h----~-~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~  280 (500)
                       .....++.++.++.++.+|..+++.+... ...    . .......+. ++.++.+..++.|..+|..+|+.+......
T Consensus        74 -~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~  151 (238)
T PF13360_consen   74 -VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVG  151 (238)
T ss_dssp             -EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred             -ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence             12346677778889999999999988763 322    1 111122222 457888888999999999999988776543


Q ss_pred             CceE-EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc
Q 010816          281 GHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH  359 (500)
Q Consensus       281 ~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h  359 (500)
                      .... ..+....+...                           ...- ....+..++.++.+.-+|........ ...  
T Consensus       152 ~~~~~~~~~~~~~~~~---------------------------~~~~-~~~~v~~~~~~g~~~~~d~~tg~~~w-~~~--  200 (238)
T PF13360_consen  152 EPRGSSPISSFSDING---------------------------SPVI-SDGRVYVSSGDGRVVAVDLATGEKLW-SKP--  200 (238)
T ss_dssp             TT-SS--EEEETTEEE---------------------------EEEC-CTTEEEEECCTSSEEEEETTTTEEEE-EEC--
T ss_pred             CCCCCcceeeeccccc---------------------------ceEE-ECCEEEEEcCCCeEEEEECCCCCEEE-Eec--
Confidence            3211 00000000000                           0000 01245566666643333765543211 111  


Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE
Q 010816          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV  395 (500)
Q Consensus       360 ~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~  395 (500)
                      ...+.. ...+++..|+.++.++.|..||+++|+.+
T Consensus       201 ~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  201 ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            112222 13467788888889999999999999875

...

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=8.2e-08  Score=84.46  Aligned_cols=129  Identities=14%  Similarity=0.226  Sum_probs=100.7

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-----ceeEEecCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~-----~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd~~  180 (500)
                      .++.|.+++|...++++..|+..|.|-..|+...     .+...+ -|...|+|+..-. ++.+|++.+.+|+|++||.+
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            4568999999999999999999999999999754     233333 5889999988766 67899999999999999987


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS  237 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~  237 (500)
                      .-++.. ......+.|+..+..|.+.....+.+++++.|...|||.+..+..+.++.
T Consensus       330 ~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  330 ATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             hhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            544311 12223344566667777877778889999999999999999988776654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.57  E-value=2.8e-07  Score=81.17  Aligned_cols=127  Identities=16%  Similarity=0.224  Sum_probs=95.0

Q ss_pred             CcEEEEeeCCCeEEEEcCCCCCC---CceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCce---EEEEeCC
Q 010816          329 PERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKF---VAVFRGH  401 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~~~---~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~---~~~~~~h  401 (500)
                      ...+..|..+|.|...|++...+   ....-.-|...|+++..-. ++++|.+.+.+|+|++||.+--++   +..+.||
T Consensus       264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH  343 (425)
T KOG2695|consen  264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH  343 (425)
T ss_pred             CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc
Confidence            35688999999999999875421   1223345888899987766 789999999999999999987666   8899999


Q ss_pred             cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCccc----CEEEE
Q 010816          402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD----EVFAV  477 (500)
Q Consensus       402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~----~V~~l  477 (500)
                      .....-+.+                         -..+....+++++.|-..|||.+..+.++.+++--..    .++++
T Consensus       344 vN~~a~l~~-------------------------~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv  398 (425)
T KOG2695|consen  344 VNLSAYLPA-------------------------HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSV  398 (425)
T ss_pred             ccccccccc-------------------------ccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccce
Confidence            765433322                         1256677888999999999999999988877654332    34556


Q ss_pred             EEc
Q 010816          478 DWS  480 (500)
Q Consensus       478 ~~s  480 (500)
                      +|.
T Consensus       399 ~~~  401 (425)
T KOG2695|consen  399 AFD  401 (425)
T ss_pred             ehh
Confidence            654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.57  E-value=7.4e-07  Score=75.56  Aligned_cols=158  Identities=15%  Similarity=0.159  Sum_probs=90.5

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccccc-CcccceEEEEeeeeecCCCCceEEEEeCC------C
Q 010816          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS-GHKKWITGISWEPVHLNAPCRRFVSASKD------G  220 (500)
Q Consensus       148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~s~s~d------g  220 (500)
                      .|..+-.+-.-+-.+..++++..||.+.+.+.+.-........ -|.+     .++.....  ...++..+.-      +
T Consensus        87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-----~as~~~~~--~~~~i~s~~~g~~n~~d  159 (319)
T KOG4714|consen   87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-----SASRKICR--HGNSILSGGCGNWNAQD  159 (319)
T ss_pred             ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-----ccccceee--cccEEecCCcceEeecc
Confidence            3443333333333467899999999999998764211110000 0100     00000000  0123332222      3


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEeCC--CCeEEEEeCCCeEEEEeCCCCee-EEEeecCCceEEEEEecCcceeee
Q 010816          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRT  297 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~t~~~dg~i~lwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~  297 (500)
                      ..+.|+++..+....-......|++++-.|  ...+++|+.||.+-+||.+.... ...++.|+.++..+-|+|.     
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk-----  234 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK-----  234 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC-----
Confidence            445666654333222122223377776655  45788999999999999987643 2345677777877777764     


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (500)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~  347 (500)
                                                    .++.|++++.||.+..||..
T Consensus       235 ------------------------------~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  235 ------------------------------NPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             ------------------------------CchheeEecCCCcEEEEcCC
Confidence                                          36789999999999999964

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.55  E-value=0.00058  Score=61.51  Aligned_cols=219  Identities=18%  Similarity=0.182  Sum_probs=123.0

Q ss_pred             ceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeC-CCCeEEEEeCCCeEEEEeCCCCeeEEEeec-----CCceE
Q 010816          211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLIRELKG-----HGHWV  284 (500)
Q Consensus       211 ~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~-----~~~~v  284 (500)
                      ..+++--..+.|..|+..+++........  + ..+.+. +++.++.+..++. .++|..+++.......     .....
T Consensus        13 ~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~-~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~   88 (246)
T PF08450_consen   13 RLYWVDIPGGRIYRVDPDTGEVEVIDLPG--P-NGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRP   88 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEESSS--E-EEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCeEEEEecCC--C-ceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCC
Confidence            45566666788999998887654322222  3 344444 6788888877554 5559888865443332     23455


Q ss_pred             EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEE
Q 010816          285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN  364 (500)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~  364 (500)
                      +.+++.++..+-.+........                            ....+.+..++.. .  ....+...-...+
T Consensus        89 ND~~vd~~G~ly~t~~~~~~~~----------------------------~~~~g~v~~~~~~-~--~~~~~~~~~~~pN  137 (246)
T PF08450_consen   89 NDVAVDPDGNLYVTDSGGGGAS----------------------------GIDPGSVYRIDPD-G--KVTVVADGLGFPN  137 (246)
T ss_dssp             EEEEE-TTS-EEEEEECCBCTT----------------------------CGGSEEEEEEETT-S--EEEEEEEEESSEE
T ss_pred             ceEEEcCCCCEEEEecCCCccc----------------------------cccccceEEECCC-C--eEEEEecCccccc
Confidence            6666666543221111000000                            0000445555543 1  1222223345578


Q ss_pred             EEEECCCCCEEE-EEeCCCcEEEEeCCCCc--eE--EEEe-CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816          365 HVYFSPDGQWVA-SASFDKSIKLWNGTTGK--FV--AVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS  438 (500)
Q Consensus       365 ~l~~sp~g~~la-sgs~Dg~i~lwd~~~~~--~~--~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  438 (500)
                      .++|+|+++.|. +-+..+.|..+++....  ..  ..+. .....                         ...-.+++.
T Consensus       138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------g~pDG~~vD  192 (246)
T PF08450_consen  138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-------------------------GYPDGLAVD  192 (246)
T ss_dssp             EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-------------------------CEEEEEEEB
T ss_pred             ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-------------------------cCCCcceEc
Confidence            999999998765 56677889998875321  11  1110 00000                         001123567


Q ss_pred             CCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEE-cCCCCEEEEEe
Q 010816          439 ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW-SPDGEKVASGG  490 (500)
Q Consensus       439 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~-s~dg~~l~s~~  490 (500)
                      .+|++.++....+.|.++|.. ++.+..+.--...+++++| .++.+.|+..+
T Consensus       193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  193 SDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             TTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            889988888889999999987 7766655444458899999 57777776554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.54  E-value=0.00015  Score=67.23  Aligned_cols=140  Identities=19%  Similarity=0.180  Sum_probs=103.3

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCC-cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDT-TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~-~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      -||.+.|.-..+.-+++-++.|..|| .+-|+|..+++.. .....-+.|.++..+++|++++.+-....|.+.|+.+|+
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            47888899999999999999999999 8999999887643 344556779999999999999998888889999999987


Q ss_pred             cccccccCcccceEEEEeeeeecCCCCceEEEEeCC----CcEEEEECCCCeEEEEecCccccEEEEEeCCCC
Q 010816          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD----GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG  252 (500)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d----g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  252 (500)
                      ... .-....+.|+.+.|+|.     .+.++-+-.+    ..|+++|+..++....... ++.=.+-+|.+|+
T Consensus       435 v~~-idkS~~~lItdf~~~~n-----sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~d~  500 (668)
T COG4946         435 VRL-IDKSEYGLITDFDWHPN-----SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDPDG  500 (668)
T ss_pred             eeE-ecccccceeEEEEEcCC-----ceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCCCC
Confidence            532 23445678899999873     3455554444    4789999988776543221 1112234566666

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.53  E-value=0.00026  Score=63.56  Aligned_cols=265  Identities=14%  Similarity=0.199  Sum_probs=148.5

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeC---CCcEEEEeCCC--CceeE--EecCCCCCEEEEEEcCCCCEEEEEeCC-CeEE
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNT--QTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA-GELQ  175 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~---d~~i~iwd~~~--~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d-~~i~  175 (500)
                      +..+.+..+-++|+|+.+.|.++..   +|.|.-|.++.  ++..+  .......+-.-++++++|++|+++.+. |.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            3456777889999999999988854   57788887764  33221  111122334789999999999998875 7788


Q ss_pred             EEeCCC-CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-
Q 010816          176 CWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-  253 (500)
Q Consensus       176 ~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-  253 (500)
                      ++-+++ |..         ..+.++.-+                        ...+-....-..|   +.+..+.|++. 
T Consensus       115 v~p~~~dG~l---------~~~v~~~~h------------------------~g~~p~~rQ~~~h---~H~a~~tP~~~~  158 (346)
T COG2706         115 VYPLQADGSL---------QPVVQVVKH------------------------TGSGPHERQESPH---VHSANFTPDGRY  158 (346)
T ss_pred             EEEcccCCcc---------ccceeeeec------------------------CCCCCCccccCCc---cceeeeCCCCCE
Confidence            887754 221         111111000                        0000000001112   55667888884 


Q ss_pred             EEEEe-CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816          254 IYTGS-QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (500)
Q Consensus       254 l~t~~-~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (500)
                      |++.+ .-..|.+|++..|++...-.                                                      
T Consensus       159 l~v~DLG~Dri~~y~~~dg~L~~~~~------------------------------------------------------  184 (346)
T COG2706         159 LVVPDLGTDRIFLYDLDDGKLTPADP------------------------------------------------------  184 (346)
T ss_pred             EEEeecCCceEEEEEcccCccccccc------------------------------------------------------
Confidence            44432 22357778776554321100                                                      


Q ss_pred             EEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCC-ceEEEEeCCcccEEEEEe
Q 010816          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRF  410 (500)
Q Consensus       333 ~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~  410 (500)
                                           ..+ .....-+.|.|+|++++..... .+++|-+|..... ..+..++.+.        
T Consensus       185 ---------------------~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~--------  234 (346)
T COG2706         185 ---------------------AEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID--------  234 (346)
T ss_pred             ---------------------ccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec--------
Confidence                                 000 0112346789999999886655 4899999998763 2222221110        


Q ss_pred             eeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEEEECCC--ccc--cccccCcccCEEEEEEcCCCCE
Q 010816          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRT--QKL--KQDLPGHADEVFAVDWSPDGEK  485 (500)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~--~~~--~~~~~~h~~~V~~l~~s~dg~~  485 (500)
                            ..|..    .......+.+..++||++|.++.. ...|-+|.+..  +++  ....+-+...--.+.|+|+|++
T Consensus       235 ------tlP~d----F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~  304 (346)
T COG2706         235 ------TLPED----FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF  304 (346)
T ss_pred             ------cCccc----cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence                  00111    112233445567999999998763 23677776643  322  2222223222357789999999


Q ss_pred             EEEEeCCC-cEEEe
Q 010816          486 VASGGKDR-VLKLW  498 (500)
Q Consensus       486 l~s~~~D~-~v~iW  498 (500)
                      |+.++.|+ .|.++
T Consensus       305 Liaa~q~sd~i~vf  318 (346)
T COG2706         305 LIAANQKSDNITVF  318 (346)
T ss_pred             EEEEccCCCcEEEE
Confidence            99988764 45554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.52  E-value=9.5e-05  Score=66.25  Aligned_cols=220  Identities=15%  Similarity=0.109  Sum_probs=127.8

Q ss_pred             CCcEEEEECCCCeEEEEecCc--cccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceee
Q 010816          219 DGDARIWDVSLRKCVICLSGH--TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (500)
Q Consensus       219 dg~v~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  296 (500)
                      +|+|..||..+++.+....--  .....+.....++.+++++.++.+..||..+|+.+..............        
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~--------   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPV--------   73 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEE--------
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceee--------
Confidence            678899999999887765321  1222222333467888889999999999999998776653211000000        


Q ss_pred             eccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc-c--CcEEEEEECCCCC
Q 010816          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-Q--QLVNHVYFSPDGQ  373 (500)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h-~--~~v~~l~~sp~g~  373 (500)
                                                    .....++.++.++.++.+|....+......... +  ..........++.
T Consensus        74 ------------------------------~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~  123 (238)
T PF13360_consen   74 ------------------------------VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD  123 (238)
T ss_dssp             ------------------------------EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT
T ss_pred             ------------------------------ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC
Confidence                                          013456667788888888866554433311111 0  1112222233478


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEeCCcccE-EEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCc
Q 010816          374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPV-YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST  452 (500)
Q Consensus       374 ~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~  452 (500)
                      .++.+..++.|..+|+++|+.+..+.....+. ..+..                 ....... ....++ .+..++.++.
T Consensus       124 ~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-----------------~~~~~~~-~~~~~~-~v~~~~~~g~  184 (238)
T PF13360_consen  124 RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS-----------------FSDINGS-PVISDG-RVYVSSGDGR  184 (238)
T ss_dssp             EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE-----------------ETTEEEE-EECCTT-EEEEECCTSS
T ss_pred             EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee-----------------ecccccc-eEEECC-EEEEEcCCCe
Confidence            88888889999999999999987776543221 00000                 0000000 012234 6666666775


Q ss_pred             -EEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          453 -LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       453 -v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                       +.+ |+++++.+-...  ...+..+ ..+++..|+.++.|+.|..|+
T Consensus       185 ~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  185 VVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             EEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred             EEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence             555 999887543222  1222221 346778888888999999886

...

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.46  E-value=2.1e-05  Score=67.32  Aligned_cols=124  Identities=18%  Similarity=0.245  Sum_probs=84.8

Q ss_pred             EEEEeeCCCeEEEEcCCCCCCCceeeecccC--cEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceE-EEEeCCcccEE
Q 010816          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFV-AVFRGHVGPVY  406 (500)
Q Consensus       331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~--~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~-~~~-~~~~~h~~~v~  406 (500)
                      .+..++.|.++++.++......   ..-|-.  .+++++++||++++++.+....|-.|.+... +.+ .+..+.+.   
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~---~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~---  203 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNK---FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS---  203 (344)
T ss_pred             ceeeccCCcceeEEEEecCccc---ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC---
Confidence            3667788888888876543221   222332  3789999999999999999999999987653 222 21111100   


Q ss_pred             EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc-----ccccccCcccCEEEEEEcC
Q 010816          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK-----LKQDLPGHADEVFAVDWSP  481 (500)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~~h~~~V~~l~~s~  481 (500)
                                  ..++           ..+|+.....+|++..||++-|||++...     ...+-+.|++.+..+.|++
T Consensus       204 ------------D~gF-----------~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl  260 (344)
T KOG4532|consen  204 ------------DHGF-----------YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL  260 (344)
T ss_pred             ------------CCce-----------eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC
Confidence                        0011           12678889999999999999999998632     2233456899999999998


Q ss_pred             CC
Q 010816          482 DG  483 (500)
Q Consensus       482 dg  483 (500)
                      -|
T Consensus       261 ~g  262 (344)
T KOG4532|consen  261 YG  262 (344)
T ss_pred             CC
Confidence            54

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.37  E-value=5.9e-07  Score=88.60  Aligned_cols=80  Identities=20%  Similarity=0.287  Sum_probs=66.9

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-C-eEEEEe
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G-ELQCWD  178 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-~-~i~~wd  178 (500)
                      ..++..|+..-+|++|+-+.+.|+.|+..|.|+++++.+|.......+|..+|+-+.=+.||..+++.+.- . -..+|+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            35677889999999999999999999999999999999998888888999999999888888877664432 2 356776


Q ss_pred             CC
Q 010816          179 PQ  180 (500)
Q Consensus       179 ~~  180 (500)
                      ..
T Consensus      1174 ~~ 1175 (1516)
T KOG1832|consen 1174 AS 1175 (1516)
T ss_pred             cc
Confidence            54

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.36  E-value=1.4e-05  Score=69.69  Aligned_cols=217  Identities=18%  Similarity=0.284  Sum_probs=121.7

Q ss_pred             ccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCe-----eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816          241 LAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK-----LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (500)
Q Consensus       241 ~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (500)
                      .-|+++.|...| ++++|...|.|.+|.-....     ....++.|.....-+                    .+. ++ 
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYL--------------------kSl-ei-   84 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYL--------------------KSL-EI-   84 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhh--------------------hhc-cH-
Confidence            457888887664 68888888999999754322     112233332110000                    000 00 


Q ss_pred             HHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC------------------CCCc-----------------------
Q 010816          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS------------------KQPK-----------------------  353 (500)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~------------------~~~~-----------------------  353 (500)
                      ..-+.............++....|.+|++|.+...                  ..+.                       
T Consensus        85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~  164 (460)
T COG5170          85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC  164 (460)
T ss_pred             HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc
Confidence            00011111223334567888889999999986432                  1000                       


Q ss_pred             e-eeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccc
Q 010816          354 T-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM  432 (500)
Q Consensus       354 ~-~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (500)
                      . ....|+.-+++++|+.|...+.++ .|=.|.+|++.-..       |.-.|..++.+         ++.   +...-+
T Consensus       165 rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D-------~sFnIVDiKP~---------nme---eLteVI  224 (460)
T COG5170         165 RVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIID-------GSFNIVDIKPH---------NME---ELTEVI  224 (460)
T ss_pred             eeccccceeEeeeeeecCchheeeec-cceeeeeccccccC-------CceEEEeccCc---------cHH---HHHHHH
Confidence            0 013467778999999999888875 67789999986421       11111111110         000   000112


Q ss_pred             eeeEEcCC-CCEEEEEECCCcEEEEECCCccc------cc--c--------ccCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 010816          433 SLYSWSAD-SRLLLSGSKDSTLKVWDIRTQKL------KQ--D--------LPGHADEVFAVDWSPDGEKVASGGKDRVL  495 (500)
Q Consensus       433 ~~~~~s~~-~~~l~s~s~d~~v~iwd~~~~~~------~~--~--------~~~h~~~V~~l~~s~dg~~l~s~~~D~~v  495 (500)
                      +...|+|. ...+.-.+..|+|++-|++...+      +.  .        +.+-.+.|..+.|+++|+++++-+- .+|
T Consensus       225 tSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltv  303 (460)
T COG5170         225 TSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTV  303 (460)
T ss_pred             hhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceE
Confidence            22245665 34666677889999999984211      11  1        1122346788999999999888765 689


Q ss_pred             EEecC
Q 010816          496 KLWMG  500 (500)
Q Consensus       496 ~iW~~  500 (500)
                      +||+.
T Consensus       304 kiwDv  308 (460)
T COG5170         304 KIWDV  308 (460)
T ss_pred             EEEec
Confidence            99974

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=5e-05  Score=74.83  Aligned_cols=156  Identities=20%  Similarity=0.247  Sum_probs=108.7

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~  187 (500)
                      .+.+.|+++  .++.||-|..+|.|.+.+.....  .....|...      ..+|.+++|||.||+|.+-.+-+.+... 
T Consensus        39 ~D~is~~av--~~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~-  107 (846)
T KOG2066|consen   39 NDAISCCAV--HDKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT-  107 (846)
T ss_pred             hhHHHHHHh--hcceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce-
Confidence            345566666  35679999999999999875432  222234332      5579999999999999998776655321 


Q ss_pred             cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC---CCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEE
Q 010816          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS---LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK  264 (500)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~  264 (500)
                       ...-..++.+++++|......+++|++||..| +.++.-+   ....+ .+....++|.++.|..+ .|+.++.+| |+
T Consensus       108 -~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~-lIAWand~G-v~  182 (846)
T KOG2066|consen  108 -QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGN-LIAWANDDG-VK  182 (846)
T ss_pred             -eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCc-EEEEecCCC-cE
Confidence             11234678899999876666788999999999 7776532   11222 34555789999999854 666666655 89


Q ss_pred             EEeCCCCeeEEEeec
Q 010816          265 VWETTQGKLIRELKG  279 (500)
Q Consensus       265 lwd~~~~~~~~~~~~  279 (500)
                      +||+.+++.+..++.
T Consensus       183 vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPP  197 (846)
T ss_pred             EEeccccceeeccCC
Confidence            999988877766543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.8e-05  Score=72.51  Aligned_cols=265  Identities=17%  Similarity=0.146  Sum_probs=152.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CCcccccccCcccceEEEEeeeeecCCCCceEEEEeC-CCcEEEE
Q 010816          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT--GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIW  225 (500)
Q Consensus       149 h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~-dg~v~iw  225 (500)
                      |.+.|+.+.-+ -.+++++++.||.++.|....  |......+..|...+.++.-     +.++..+.+.+. |..+|++
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~-----S~dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAV-----SYDGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhc-----cccceeEeeccCcccceeEE
Confidence            66666665443 457999999999999997532  22222223455555555442     234556778676 9999999


Q ss_pred             ECCCCeEEEEecC--ccccEEEEEeCCC-C--eEEE-EeCCCeEEEEeCCCCee--EEEeecCCceEEEEEecCcceeee
Q 010816          226 DVSLRKCVICLSG--HTLAVTCVKWGGD-G--VIYT-GSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRT  297 (500)
Q Consensus       226 d~~~~~~~~~~~~--h~~~v~~~~~~~~-~--~l~t-~~~dg~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~  297 (500)
                      |+.....+..++-  -...+.++ .++. .  .|+. .-.++.+.++|-..+.+  ...-.-|..+|..+...+.     
T Consensus        82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa-----  155 (558)
T KOG0882|consen   82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA-----  155 (558)
T ss_pred             EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecc-----
Confidence            9986554322211  11122222 1221 1  3333 34678899999765432  2233456777777665543     


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC-Cce-------------eeecccCcE
Q 010816          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-PKT-------------RMTGHQQLV  363 (500)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~-~~~-------------~~~~h~~~v  363 (500)
                                                     .+.+++....|.|..|.....-+ +..             .+.......
T Consensus       156 -------------------------------~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p  204 (558)
T KOG0882|consen  156 -------------------------------GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP  204 (558)
T ss_pred             -------------------------------ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCc
Confidence                                           23466666778899997652110 100             011123446


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC-----Cccc-----EEEEEeeeeeeecCCCCceeeee----cc
Q 010816          364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-----HVGP-----VYQIRFELIYCFRYPSNFYCVVD----MS  429 (500)
Q Consensus       364 ~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-----h~~~-----v~~~~~~~~~~~~~~~~~~~~~~----~~  429 (500)
                      .++.|+|+|..+++-+.|..|++++..+|+++..+..     |..+     +..+.+.        .......+    .+
T Consensus       205 ts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Velg--------RRmaverelek~~~  276 (558)
T KOG0882|consen  205 TSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELG--------RRMAVERELEKHGS  276 (558)
T ss_pred             cceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehh--------hhhhHHhhHhhhcC
Confidence            7899999999999999999999999999987765532     1110     1111110        00000000    01


Q ss_pred             ccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc
Q 010816          430 CCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ  465 (500)
Q Consensus       430 ~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~  465 (500)
                      ...+...|...|.+|+-|+.=| |++.++.++++.+
T Consensus       277 ~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r  311 (558)
T KOG0882|consen  277 TVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR  311 (558)
T ss_pred             cccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence            1122235677888998887665 7888887765543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.32  E-value=1.5e-05  Score=79.44  Aligned_cols=183  Identities=15%  Similarity=0.162  Sum_probs=121.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc
Q 010816          161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT  240 (500)
Q Consensus       161 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~  240 (500)
                      ++..++-|+.-..+..+|+++.+..+..-.+ ...+.=+..       .++.+.+|...|+|-+-|.++.+.+.++..|+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~-a~~v~imR~-------Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs  217 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS-ASGVTIMRY-------NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS  217 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeecc-CCceEEEEe-------cCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence            3456777777777888888776543321111 111333322       34578889999999999999999999999999


Q ss_pred             ccEEEEEeCCCCeEEEEeC---------CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHH
Q 010816          241 LAVTCVKWGGDGVIYTGSQ---------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (500)
Q Consensus       241 ~~v~~~~~~~~~~l~t~~~---------dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (500)
                      +.|++....+ +.|+++|.         |.-|+|||+++-+.+.-+.-+..+ .-+.                       
T Consensus       218 ~siSDfDv~G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr-----------------------  272 (1118)
T KOG1275|consen  218 GSISDFDVQG-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR-----------------------  272 (1118)
T ss_pred             cceeeeeccC-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh-----------------------
Confidence            9999887664 46777763         556899999875544322211111 0000                       


Q ss_pred             HHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC---ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (500)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~---~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd  388 (500)
                                  +.+.-...++..|..|...+-|...-..+   ..........+..+++|++|+.+|.|..+|.|.+|.
T Consensus       273 ------------f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  273 ------------FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ------------hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence                        11122456888888888888874332222   222233345589999999999999999999999997

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=0.00058  Score=66.22  Aligned_cols=29  Identities=10%  Similarity=0.069  Sum_probs=21.0

Q ss_pred             EEECCCCCEEEEEeCC---------CcEEEEeCCCCce
Q 010816          366 VYFSPDGQWVASASFD---------KSIKLWNGTTGKF  394 (500)
Q Consensus       366 l~~sp~g~~lasgs~D---------g~i~lwd~~~~~~  394 (500)
                      ..|||||++|+..+..         ..|.+.|+.+++.
T Consensus       324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI  361 (419)
T ss_pred             ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence            4899999998876654         2577777776653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.27  E-value=0.003  Score=56.87  Aligned_cols=206  Identities=17%  Similarity=0.205  Sum_probs=121.0

Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEE
Q 010816          155 CIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV  233 (500)
Q Consensus       155 ~v~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~  233 (500)
                      ++.|.+ ++.++++--..+.|..|+..++........+    ..++.+..    .+ ..++.+...+ +.++|..+++..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~----~~-g~l~v~~~~~-~~~~d~~~g~~~   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDR----PD-GRLYVADSGG-IAVVDPDTGKVT   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEEC----TT-SEEEEEETTC-EEEEETTTTEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEc----cC-CEEEEEEcCc-eEEEecCCCcEE
Confidence            567887 6666677667899999999887543222222    34444431    12 4566666544 455598887543


Q ss_pred             EEec----C-ccccEEEEEeCCCCeEEEEeCC---------CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816          234 ICLS----G-HTLAVTCVKWGGDGVIYTGSQD---------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (500)
Q Consensus       234 ~~~~----~-h~~~v~~~~~~~~~~l~t~~~d---------g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (500)
                      ....    . .......+++.++|.|+.+...         |.|..++.. ++... +...-..-+.++++++.      
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg------  145 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDG------  145 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTS------
T ss_pred             EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcc------
Confidence            3322    2 3456788999999977665532         456666665 44322 22223334566666642      


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC-C--ceee---ecccCcEEEEEECCCCC
Q 010816          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-P--KTRM---TGHQQLVNHVYFSPDGQ  373 (500)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~-~--~~~~---~~h~~~v~~l~~sp~g~  373 (500)
                                                   ...+++-+..+.|..++...... .  ...+   .........+++..+|+
T Consensus       146 -----------------------------~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~  196 (246)
T PF08450_consen  146 -----------------------------KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN  196 (246)
T ss_dssp             -----------------------------SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred             -----------------------------hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence                                         11334666777788777653332 1  1111   11122477899999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816          374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (500)
Q Consensus       374 ~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~  408 (500)
                      +.++.-..+.|.++|.+ |+.+..+.......+++
T Consensus       197 l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~  230 (246)
T PF08450_consen  197 LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC  230 (246)
T ss_dssp             EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred             EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence            88888888999999987 88877665443344444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.24  E-value=0.00066  Score=60.99  Aligned_cols=122  Identities=22%  Similarity=0.304  Sum_probs=78.5

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEe-----CCCcEEEEeCC-CCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGS-----GDTTVRLWDLN-TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~-----~d~~i~iwd~~-~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~  175 (500)
                      ..+.||      -.|||||++|.+.-     ..|.|-|||.. +-+.+..+..|.-.-..+.+.|||+.|+.+  +|-|.
T Consensus        50 RHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA--NGGI~  121 (305)
T PF07433_consen   50 RHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA--NGGIE  121 (305)
T ss_pred             CEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE--cCCCc
Confidence            456777      46999999999873     45789999998 555666777777777889999999888775  22221


Q ss_pred             EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE--e--cCccccEEEEEeCCC
Q 010816          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC--L--SGHTLAVTCVKWGGD  251 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~--~--~~h~~~v~~~~~~~~  251 (500)
                      - .+++|+..                           +=...++-++...|..+++.+..  +  .-|...|.-+++.++
T Consensus       122 T-hpd~GR~k---------------------------LNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~  173 (305)
T PF07433_consen  122 T-HPDSGRAK---------------------------LNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGD  173 (305)
T ss_pred             c-CcccCcee---------------------------cChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCC
Confidence            0 11111110                           11112334445555566665544  3  336778889999988


Q ss_pred             CeEEEEeC
Q 010816          252 GVIYTGSQ  259 (500)
Q Consensus       252 ~~l~t~~~  259 (500)
                      |.++.|.+
T Consensus       174 G~V~~a~Q  181 (305)
T PF07433_consen  174 GTVAFAMQ  181 (305)
T ss_pred             CcEEEEEe
Confidence            87776654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.20  E-value=0.0046  Score=61.66  Aligned_cols=297  Identities=15%  Similarity=0.133  Sum_probs=152.6

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCceeEEecCCCC------CEE--EEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc-c
Q 010816          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN------WVL--CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL-S  190 (500)
Q Consensus       120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~------~v~--~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~  190 (500)
                      +..+..++.++.+.-.|..+++.+........      .+.  .+... ++..++.++.++.|..+|.++|+..-..- .
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            44566777889999999988887765542221      010  01111 22678888899999999999997653221 1


Q ss_pred             CcccceEEEEeeeeecCCCCceEEEEe---------CCCcEEEEECCCCeEEEEecCccc--------------------
Q 010816          191 GHKKWITGISWEPVHLNAPCRRFVSAS---------KDGDARIWDVSLRKCVICLSGHTL--------------------  241 (500)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s---------~dg~v~iwd~~~~~~~~~~~~h~~--------------------  241 (500)
                      .+...-..+.-.|...   ..+++.++         .++.+...|..+++.+..+.....                    
T Consensus       140 ~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         140 DQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             CCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            1100000111122111   13444443         367888999999887765532110                    


Q ss_pred             cEE-EEEeC-CCCeEEEEeCCC------------------eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816          242 AVT-CVKWG-GDGVIYTGSQDC------------------TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (500)
Q Consensus       242 ~v~-~~~~~-~~~~l~t~~~dg------------------~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (500)
                      .+. +.... ..+.++.++.++                  .|.-.|..+|+.....+........+.....-.+...   
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~---  293 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI---  293 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec---
Confidence            010 12222 245777777665                  6888888888877665422111110000000000000   


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE---
Q 010816          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA---  378 (500)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg---  378 (500)
                                          ..+.+.....++.++.+|.+...|....+........    ...++.+|  ..+..+   
T Consensus       294 --------------------~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~  347 (488)
T cd00216         294 --------------------KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFH  347 (488)
T ss_pred             --------------------cccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEcccc
Confidence                                0001111235677888999998887765543322111    11233344  222222   


Q ss_pred             ---------------eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816          379 ---------------SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL  443 (500)
Q Consensus       379 ---------------s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  443 (500)
                                     ..+|.+.-.|..+|+.+-......... ...+                .......  .....+..
T Consensus       348 ~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~-~~~~----------------g~~~~~~--~~~~~g~~  408 (488)
T cd00216         348 IPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRD-SWNI----------------GFPHWGG--SLATAGNL  408 (488)
T ss_pred             ccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccc-cccc----------------CCcccCc--ceEecCCe
Confidence                           245778888888887654333210000 0000                0000000  00125678


Q ss_pred             EEEEECCCcEEEEECCCcccccccc
Q 010816          444 LLSGSKDSTLKVWDIRTQKLKQDLP  468 (500)
Q Consensus       444 l~s~s~d~~v~iwd~~~~~~~~~~~  468 (500)
                      ++.++.||.++.+|.++++.+-+.+
T Consensus       409 v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         409 VFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             EEEECCCCeEEEEECCCCceeeEEE
Confidence            8889999999999999998875543

The alignment model contains an 8-bladed beta-propeller.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.19  E-value=3.6e-05  Score=73.61  Aligned_cols=75  Identities=31%  Similarity=0.472  Sum_probs=63.3

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~  182 (500)
                      .....|.|++++|+.+.|+.|+.||+|.+||...+...  +....-....++|+|+|..+++|+..|.+++||..-+
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            35678999999999999999999999999998766433  2234455788999999999999999999999998644

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=0.00026  Score=64.34  Aligned_cols=81  Identities=20%  Similarity=0.323  Sum_probs=69.5

Q ss_pred             ccccCCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeC
Q 010816          102 ATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDP  179 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~~wd~  179 (500)
                      ..+.+|...|..++|+|..+ ++..++-+..|+|.|+++...+..+..| ..+.+++|.-|. .++..|...|.|.+||+
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            45678999999999999988 6788899999999999998888777777 789999998765 56778888999999999


Q ss_pred             CCCC
Q 010816          180 QTGK  183 (500)
Q Consensus       180 ~~~~  183 (500)
                      +..+
T Consensus       266 R~~~  269 (463)
T KOG1645|consen  266 RQPE  269 (463)
T ss_pred             cCCC
Confidence            7654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.16  E-value=7.2e-05  Score=74.70  Aligned_cols=179  Identities=17%  Similarity=0.268  Sum_probs=120.6

Q ss_pred             CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816          252 GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (500)
Q Consensus       252 ~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (500)
                      ..++.|+....+..+|+++.+..+........+.-+.                                      .++..
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--------------------------------------~Nnr~  189 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--------------------------------------YNNRN  189 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEEE--------------------------------------ecCcE
Confidence            3567777777888899998877665443222222221                                      12346


Q ss_pred             EEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC---------CCcEEEEeCCCCceEEEEeCCc
Q 010816          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---------DKSIKLWNGTTGKFVAVFRGHV  402 (500)
Q Consensus       332 ~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~---------Dg~i~lwd~~~~~~~~~~~~h~  402 (500)
                      +.+|...|+|.+-|+.. -.....+..|++.|..  |+-.|++|++++.         |.-|+|||++.-+.+.-+.-+.
T Consensus       190 lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~  266 (1118)
T KOG1275|consen  190 LFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY  266 (1118)
T ss_pred             EEeecccceEEeecCCc-Cceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc
Confidence            88999999999999764 3456778899998875  4557999999876         4568999988766554333333


Q ss_pred             ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC-CCEEEEEECCCcEEEEECCC---ccc-cccccCcccCEEEE
Q 010816          403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD-SRLLLSGSKDSTLKVWDIRT---QKL-KQDLPGHADEVFAV  477 (500)
Q Consensus       403 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~s~d~~v~iwd~~~---~~~-~~~~~~h~~~V~~l  477 (500)
                      ++    .|                        +.|.|. ...++.++..|...+-|..+   ... +.-+..-...+.++
T Consensus       267 ~P----~f------------------------lrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~f  318 (1118)
T KOG1275|consen  267 GP----QF------------------------LRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAF  318 (1118)
T ss_pred             Cc----hh------------------------hhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeE
Confidence            33    00                        123333 34688888889999988432   211 11111123458899


Q ss_pred             EEcCCCCEEEEEeCCCcEEEec
Q 010816          478 DWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       478 ~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ++|++|+.||.|..+|.|.+|.
T Consensus       319 DiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  319 DISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EecCCCceEEEecccCcEeeec
Confidence            9999999999999999999994

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=2.6e-05  Score=71.57  Aligned_cols=204  Identities=19%  Similarity=0.286  Sum_probs=129.6

Q ss_pred             ceEEEEeCCCcEEEEECCC---CeEEEEecCccccEEEEEeCCCCeE-EEEeC-CCeEEEEeCCCCeeEEEee-----cC
Q 010816          211 RRFVSASKDGDARIWDVSL---RKCVICLSGHTLAVTCVKWGGDGVI-YTGSQ-DCTIKVWETTQGKLIRELK-----GH  280 (500)
Q Consensus       211 ~~~~s~s~dg~v~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~l-~t~~~-dg~i~lwd~~~~~~~~~~~-----~~  280 (500)
                      ..+++++.||.++.|--..   -..+..+..|...|.+++.+.++.+ .+.+. |..++++|+.+-..+.-++     +.
T Consensus        21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~  100 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF  100 (558)
T ss_pred             heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence            5788999999999997543   1334556678888888888888865 45566 8999999987543321111     11


Q ss_pred             CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-EeeCCCeEEEEcCCCCC-CCceeeec
Q 010816          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSK-QPKTRMTG  358 (500)
Q Consensus       281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~d~~v~~wd~~~~~-~~~~~~~~  358 (500)
                      ..++.+    +                                  +..-..++ +.-.++.+.++|..... +......-
T Consensus       101 a~wv~s----k----------------------------------Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl  142 (558)
T KOG0882|consen  101 AEWVTS----K----------------------------------GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL  142 (558)
T ss_pred             eEEecC----C----------------------------------CCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence            111100    0                                  00111233 33457889999976554 33344556


Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816          359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (500)
Q Consensus       359 h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (500)
                      |..+|.++.++|.+..+.+....|.|.-|.... -+...         ..+.|+    +..-...+.........+.+.|
T Consensus       143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr---------~~l~~~----~K~eTdLy~f~K~Kt~pts~Ef  209 (558)
T KOG0882|consen  143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPR---------TNLNFE----LKHETDLYGFPKAKTEPTSFEF  209 (558)
T ss_pred             ccCceEEEEeeccccceeeccccceeEeecCCCcccCcc---------cccccc----ccccchhhcccccccCccceEE
Confidence            899999999999999999999999999998763 11000         000110    0001111222222233455578


Q ss_pred             cCCCCEEEEEECCCcEEEEECCCccccc
Q 010816          438 SADSRLLLSGSKDSTLKVWDIRTQKLKQ  465 (500)
Q Consensus       438 s~~~~~l~s~s~d~~v~iwd~~~~~~~~  465 (500)
                      +|+|..+++-+.|..|++++.+++++++
T Consensus       210 sp~g~qistl~~DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  210 SPDGAQISTLNPDRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             ccccCcccccCcccEEEEEEeccchhhh
Confidence            9999999999999999999999877543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.11  E-value=0.00052  Score=59.84  Aligned_cols=164  Identities=18%  Similarity=0.233  Sum_probs=101.2

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecC-------CCCCEEEEEEcCC------CCEEEEEeCCCeEEE
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-------HKNWVLCIAWSAD------GKHLVSGSKAGELQC  176 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~-------h~~~v~~v~~s~~------~~~l~s~~~d~~i~~  176 (500)
                      .-..++||||+.+||.+...|+|+++|+.... ++.+..       -...|..+.|.+.      ...|+.-.++|.++-
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            45578999999999999999999999997633 233221       2345777777542      235777788998888


Q ss_pred             EeCCCCCccc-------ccccCcccceEEEEeeeeecCCCCceEEEEe-CC----------CcEEEEECCCCeE------
Q 010816          177 WDPQTGKPSG-------NPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KD----------GDARIWDVSLRKC------  232 (500)
Q Consensus       177 wd~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s-~d----------g~v~iwd~~~~~~------  232 (500)
                      |-+..+....       .....+...|.++.|+|.+     +.|+.|| ..          .-+.-|.+-.+..      
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-----~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~  198 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-----RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT  198 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-----CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence            8764332111       1112235678888888754     2333332 11          1234454321100      


Q ss_pred             --------------E---E---Ee---cCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeec
Q 010816          233 --------------V---I---CL---SGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG  279 (500)
Q Consensus       233 --------------~---~---~~---~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~  279 (500)
                                    .   .   .+   ......|..+..+|||. |++...+|.|.+|++..-+..+....
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence                          0   0   00   11245677888899985 77789999999999987666555443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.10  E-value=0.0024  Score=66.46  Aligned_cols=70  Identities=19%  Similarity=0.173  Sum_probs=56.4

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      .+.|.++.|..++.-++.+..+|.|.+-|.++..... ...-...|.+++||||++.++-.+.++++.+-+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMT  137 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence            3689999999999999999999999999887654321 122356899999999999999998888877653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.03  E-value=7.3e-06  Score=81.17  Aligned_cols=128  Identities=20%  Similarity=0.269  Sum_probs=88.3

Q ss_pred             eEEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCC
Q 010816          231 KCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (500)
Q Consensus       231 ~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  309 (500)
                      +...+++.|+...+|++|+.+ +.|+.|+..|.|++|++.+|........|+..|+-+..+.++..              
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~-------------- 1157 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGST-------------- 1157 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcce--------------
Confidence            445667889999999999864 57899999999999999999988888888888877654433211              


Q ss_pred             HHHHHHHHHHhhhhhcCCCCcEEEEeeCC-CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816          310 PEEMKKAALERYNKIKGNAPERLVSGSDD-FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (500)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~d-~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd  388 (500)
                                           .+.+++.. .-..+|++.....+...+.    .-.++.|+...+.-+.|.......+||
T Consensus      1158 ---------------------~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YD 1212 (1516)
T KOG1832|consen 1158 ---------------------QLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYD 1212 (1516)
T ss_pred             ---------------------eeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEe
Confidence                                 12222222 2355787655444433332    345788887765556666666789999


Q ss_pred             CCCCceEEE
Q 010816          389 GTTGKFVAV  397 (500)
Q Consensus       389 ~~~~~~~~~  397 (500)
                      ++++..+.+
T Consensus      1213 vqT~~~l~t 1221 (1516)
T KOG1832|consen 1213 VQTCSPLQT 1221 (1516)
T ss_pred             cccCcHHHH
Confidence            999876554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.02  E-value=0.0059  Score=55.14  Aligned_cols=212  Identities=14%  Similarity=0.200  Sum_probs=119.3

Q ss_pred             CCcEEEEECCCCeE---EEEecCccccEEEEEeCCCC-eEEEEeC---CCeEEEEeCCC--CeeEE--EeecCCceEEEE
Q 010816          219 DGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGDG-VIYTGSQ---DCTIKVWETTQ--GKLIR--ELKGHGHWVNSL  287 (500)
Q Consensus       219 dg~v~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~-~l~t~~~---dg~i~lwd~~~--~~~~~--~~~~~~~~v~~~  287 (500)
                      ++-|.+|++.+..-   ...+..+....+-++|++++ .|+++-.   +|.|.-|.+..  |++..  .....+.+-.-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            46788888764321   11223455667788899887 5666544   46666665543  44321  111111111233


Q ss_pred             EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-CCCeEEEEcCCCCCCC--ceeeecccCc--
Q 010816          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQP--KTRMTGHQQL--  362 (500)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~~~~--~~~~~~h~~~--  362 (500)
                      +++++                                    +..++++. .-|.|.++.+......  ...+..|...  
T Consensus        95 svd~~------------------------------------g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p  138 (346)
T COG2706          95 SVDED------------------------------------GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP  138 (346)
T ss_pred             EECCC------------------------------------CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCC
Confidence            33332                                    23344443 3566777765432211  1122233333  


Q ss_pred             --------EEEEEECCCCCEEEEEeCC-CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccce
Q 010816          363 --------VNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS  433 (500)
Q Consensus       363 --------v~~l~~sp~g~~lasgs~D-g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (500)
                              +....|.|++++|++.+.. -.|.+|++..|.+...-...-                        .-....-
T Consensus       139 ~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v------------------------~~G~GPR  194 (346)
T COG2706         139 HERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV------------------------KPGAGPR  194 (346)
T ss_pred             CccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc------------------------CCCCCcc
Confidence                    7788999999999987652 369999998876532111100                        0011122


Q ss_pred             eeEEcCCCCEEEEEE-CCCcEEEEECCC--ccc--cc---cccC---cccCEEEEEEcCCCCEEEEEe
Q 010816          434 LYSWSADSRLLLSGS-KDSTLKVWDIRT--QKL--KQ---DLPG---HADEVFAVDWSPDGEKVASGG  490 (500)
Q Consensus       434 ~~~~s~~~~~l~s~s-~d~~v~iwd~~~--~~~--~~---~~~~---h~~~V~~l~~s~dg~~l~s~~  490 (500)
                      -++|+|++++..... .+++|-+|....  ++.  ++   .++.   -.....++..++||++|..+.
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN  262 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN  262 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence            347899999988765 589999998876  322  11   1221   123567889999999998763

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.00024  Score=70.16  Aligned_cols=142  Identities=23%  Similarity=0.309  Sum_probs=98.1

Q ss_pred             cCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCC-----CCEEEEEeCCCeEEEEeCCC-CCccccccc
Q 010816          117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-----GKHLVSGSKAGELQCWDPQT-GKPSGNPLS  190 (500)
Q Consensus       117 sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~-----~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~  190 (500)
                      ..+|.++|||+.||+|.|-.+-+........ ...++.+++++|+     .+.+++|+.-| +.++.-.= |......+.
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~  157 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS  157 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence            3469999999999999999887766554433 5678999999998     67899999988 76664210 111111345


Q ss_pred             CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccE------EEEEeCCCCeEEEEeCCCeEE
Q 010816          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV------TCVKWGGDGVIYTGSQDCTIK  264 (500)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v------~~~~~~~~~~l~t~~~dg~i~  264 (500)
                      .-.+.|.++.|.-       ..++-++.+ -|++||..+++.+..+......+      ..+.|.++..|+.| +..+|+
T Consensus       158 ~~eG~I~~i~W~g-------~lIAWand~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG-W~d~v~  228 (846)
T KOG2066|consen  158 EGEGPIHSIKWRG-------NLIAWANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG-WGDSVK  228 (846)
T ss_pred             cCccceEEEEecC-------cEEEEecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe-cCCeEE
Confidence            5678899999963       345555555 48999999888776554332222      24677777666654 555788


Q ss_pred             EEeCC
Q 010816          265 VWETT  269 (500)
Q Consensus       265 lwd~~  269 (500)
                      +..++
T Consensus       229 i~~I~  233 (846)
T KOG2066|consen  229 ICSIK  233 (846)
T ss_pred             EEEEe
Confidence            88776

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.94  E-value=0.0015  Score=62.37  Aligned_cols=275  Identities=15%  Similarity=0.175  Sum_probs=128.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-
Q 010816          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-  230 (500)
Q Consensus       152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-  230 (500)
                      .|..++|.++...|+.|...|.|-+|.+...+....   .....-....+.+...+           ++.-.+-|+... 
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~---~~~~~~~~~~~~~~~~~-----------~~~~~l~di~~r~   68 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN---REQPPDLDYNFRRFSLN-----------NSPGKLTDISDRA   68 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S--GG-----------GSS-SEEE-GGG-
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc---cCCCcccCccccccccc-----------CCCcceEEehhhC
Confidence            488999999988999999999999998754332110   00000011111111111           111222333221 


Q ss_pred             --------eEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEee--c------CCceEEEEEecCcce
Q 010816          231 --------KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK--G------HGHWVNSLALSTEYA  294 (500)
Q Consensus       231 --------~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~--~------~~~~v~~~~~~~~~~  294 (500)
                              .....+....++|++++.+.-|.++.|..+|.+.|.|+|....+..-.  .      ....+.++.|...  
T Consensus        69 ~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm--  146 (395)
T PF08596_consen   69 PPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM--  146 (395)
T ss_dssp             -TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE--
T ss_pred             CcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE--
Confidence                    223334455789999999888999999999999999999888765422  1      1223444444310  


Q ss_pred             eeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC--CCCcee----eecccCcEEEEE-
Q 010816          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS--KQPKTR----MTGHQQLVNHVY-  367 (500)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~--~~~~~~----~~~h~~~v~~l~-  367 (500)
                        ...    +..+                    ..-.++.|...|.+.+|.+...  ......    ...+.+.|..+. 
T Consensus       147 --~~~----~D~y--------------------SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~  200 (395)
T PF08596_consen  147 --TLG----GDGY--------------------SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIP  200 (395)
T ss_dssp             --E-T----TSSS--------------------EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEE
T ss_pred             --ecC----CCcc--------------------cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEE
Confidence              000    0000                    0125788888999999876421  111111    113445554443 


Q ss_pred             ECCC-C-------------------CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeee
Q 010816          368 FSPD-G-------------------QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD  427 (500)
Q Consensus       368 ~sp~-g-------------------~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  427 (500)
                      |+.+ |                   +.++....+..+|++...+.+......  ..+..+-..                 
T Consensus       201 i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~-----------------  261 (395)
T PF08596_consen  201 INADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSA-----------------  261 (395)
T ss_dssp             EETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEE-----------------
T ss_pred             EECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee--ccccccceE-----------------
Confidence            3221 1                   123333446678888887766543222  111111100                 


Q ss_pred             ccccceeeEE--cCCCCEEEEEECCCcEEEEECCCccccccccCc----ccCEEEEEEcCCCCEEEEEeCC
Q 010816          428 MSCCMSLYSW--SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH----ADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       428 ~~~~~~~~~~--s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h----~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                           ..+.+  ...+..|++-..+|.|++|.+-..+.+....-.    ...+....++++|+.++-.|..
T Consensus       262 -----~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  262 -----SVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             -----EEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred             -----EEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc
Confidence                 00000  124557888889999999999876665443321    1223345678888877666554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.92  E-value=0.00027  Score=70.19  Aligned_cols=70  Identities=21%  Similarity=0.310  Sum_probs=61.0

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      +++++|+|..-.||.|-.-|.+.+|...+.+.-.....|..+|.-+.||++|..|+++..-|.+.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            4569999999999999999999999987655444445799999999999999999999999999999765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.0005  Score=62.50  Aligned_cols=129  Identities=10%  Similarity=0.117  Sum_probs=86.3

Q ss_pred             EEEEECCCCeEEEEecCccccEEEEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816          222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (500)
Q Consensus       222 v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (500)
                      +++.+..+.+....+.+|...|..++|+|.  |.+..++.+..|+|.|+++...+..+..+ ..+.++++.-+       
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDld-------  246 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLD-------  246 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccC-------
Confidence            444444444444456778889999999985  46888999999999999998777776655 55667666543       


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc--cCcEEEEE------ECCC
Q 010816          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH--QQLVNHVY------FSPD  371 (500)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h--~~~v~~l~------~sp~  371 (500)
                                                  ....+.+|-..|.|.++|++....+...+.+.  ..+|..++      ..+.
T Consensus       247 ----------------------------e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~  298 (463)
T KOG1645|consen  247 ----------------------------ERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTS  298 (463)
T ss_pred             ----------------------------CcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccc
Confidence                                        13468889999999999998877665554442  22343333      2334


Q ss_pred             CCEEEEEeCCCcEEEEe
Q 010816          372 GQWVASASFDKSIKLWN  388 (500)
Q Consensus       372 g~~lasgs~Dg~i~lwd  388 (500)
                      |.+|+..+.+  +..|+
T Consensus       299 gglLv~~lt~--l~f~e  313 (463)
T KOG1645|consen  299 GGLLVFALTV--LQFYE  313 (463)
T ss_pred             cceEEeeehh--hhhhh
Confidence            5666655544  34444

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.0036  Score=62.73  Aligned_cols=201  Identities=13%  Similarity=0.174  Sum_probs=113.6

Q ss_pred             CCceEEEEeCCCcEEEEECCCCeEEEEecCcccc-EEEEEeCCC-CeEEEEeCCC-----eEEEEeCCCC------eeEE
Q 010816          209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA-VTCVKWGGD-GVIYTGSQDC-----TIKVWETTQG------KLIR  275 (500)
Q Consensus       209 ~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~-~~l~t~~~dg-----~i~lwd~~~~------~~~~  275 (500)
                      ....++.|+.+|.|.+.+-+ .+.+..+..+... |..+....+ ..|++.+.|+     .+++||+..-      .++.
T Consensus        34 ~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~  112 (933)
T KOG2114|consen   34 STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY  112 (933)
T ss_pred             CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence            34578899999998887733 3333555555555 333322222 3677766554     5899998642      1221


Q ss_pred             E--eec-----CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCC
Q 010816          276 E--LKG-----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV  348 (500)
Q Consensus       276 ~--~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~  348 (500)
                      .  +..     ...++.+++++.+                                    -..++.|-.+|.|..+.-..
T Consensus       113 ~~ri~~~~np~~~~p~s~l~Vs~~------------------------------------l~~Iv~Gf~nG~V~~~~GDi  156 (933)
T KOG2114|consen  113 EHRIFTIKNPTNPSPASSLAVSED------------------------------------LKTIVCGFTNGLVICYKGDI  156 (933)
T ss_pred             eeeeeccCCCCCCCcceEEEEEcc------------------------------------ccEEEEEecCcEEEEEcCcc
Confidence            1  111     1223334444332                                    23578888999998885321


Q ss_pred             --CCCC-ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeCCcccEEEEEeeeeeeecCCCCcee
Q 010816          349 --SKQP-KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQIRFELIYCFRYPSNFYC  424 (500)
Q Consensus       349 --~~~~-~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  424 (500)
                        .+.. .........+|+.+++..++..++-...-..|.+|.+.... ...++..|..++.+..               
T Consensus       157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss---------------  221 (933)
T KOG2114|consen  157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSS---------------  221 (933)
T ss_pred             hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeee---------------
Confidence              1111 11223345789999999988763333344578999887333 2445666777766653               


Q ss_pred             eeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccccc-CcccCE
Q 010816          425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-GHADEV  474 (500)
Q Consensus       425 ~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~V  474 (500)
                                  +++....+++++.. .+.+|+......-..+. ||....
T Consensus       222 ------------~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  222 ------------FSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKEM  259 (933)
T ss_pred             ------------cCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeEEE
Confidence                        34444435554443 58888877655444555 665433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.00015  Score=69.64  Aligned_cols=93  Identities=19%  Similarity=0.287  Sum_probs=76.0

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL-CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      .|.-+.|+|.-.++|++..+|.+.+..+. .+.+..+.-|...++ +++|.|||+.||.|-.||+|++-|.++|......
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            46778999999999999999999999887 556667766777777 9999999999999999999999999988655443


Q ss_pred             ccCcccceEEEEeee
Q 010816          189 LSGHKKWITGISWEP  203 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~  203 (500)
                      .......|..+.|.+
T Consensus       101 ~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  101 LFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccchheeeccc
Confidence            344556677777753

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.76  E-value=0.019  Score=57.28  Aligned_cols=116  Identities=16%  Similarity=0.082  Sum_probs=67.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCcccccccCcccceE--EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc
Q 010816          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT--GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH  239 (500)
Q Consensus       162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h  239 (500)
                      +..++.++.++.+...|..+|+..-...........  .+.-.+... .+..+++.++.++.|.-+|.++++.+..+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            446777778899999999888754322111100000  000000000 01157788889999999999999887665432


Q ss_pred             cc-----cEEE-EEeCCCCeEEEEe---------CCCeEEEEeCCCCeeEEEeec
Q 010816          240 TL-----AVTC-VKWGGDGVIYTGS---------QDCTIKVWETTQGKLIRELKG  279 (500)
Q Consensus       240 ~~-----~v~~-~~~~~~~~l~t~~---------~dg~i~lwd~~~~~~~~~~~~  279 (500)
                      ..     .+.+ .... ++.++.++         .++.+.-+|..+|+.+.....
T Consensus       140 ~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         140 DQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             CCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence            21     0111 1111 35565554         367888999999988776543

The alignment model contains an 8-bladed beta-propeller.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=0.0083  Score=60.27  Aligned_cols=223  Identities=13%  Similarity=0.145  Sum_probs=126.5

Q ss_pred             EEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC-EEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCCccccc
Q 010816          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-VLCIAWSADGKHLVSGSKAG-----ELQCWDPQTGKPSGNP  188 (500)
Q Consensus       115 ~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~v~~s~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~  188 (500)
                      .|++.+..+|.|+.+|.|.+.+-.- ..+..++.+... |..+-...+..+|++.+.|+     .+++||++..+...  
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~--  106 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN--  106 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC--
Confidence            3678899999999999998887421 222445556655 44443333446888877765     48999986432100  


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEEe
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWE  267 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd  267 (500)
                           .        |        .++     +..+++....+       -...++++++.+.+ ..++.|-.+|.|..+.
T Consensus       107 -----s--------P--------~c~-----~~~ri~~~~np-------~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~  153 (933)
T KOG2114|consen  107 -----S--------P--------QCL-----YEHRIFTIKNP-------TNPSPASSLAVSEDLKTIVCGFTNGLVICYK  153 (933)
T ss_pred             -----C--------c--------cee-----eeeeeeccCCC-------CCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence                 0        0        000     11222221111       12345666666544 3577888899998874


Q ss_pred             --CC--CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEE
Q 010816          268 --TT--QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (500)
Q Consensus       268 --~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~  343 (500)
                        ..  .|.........+.+|+.+++..+...                                  -.++  .....|.+
T Consensus       154 GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s----------------------------------~lFv--~Tt~~V~~  197 (933)
T KOG2114|consen  154 GDILRDRGSRQDYSHRGKEPITGLALRSDGKS----------------------------------VLFV--ATTEQVML  197 (933)
T ss_pred             CcchhccccceeeeccCCCCceeeEEecCCce----------------------------------eEEE--EecceeEE
Confidence              11  11112222334557777776543211                                  0122  22345777


Q ss_pred             EcCCCCCCCcee-eecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe-CCcccEEEEEee
Q 010816          344 WEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQIRFE  411 (500)
Q Consensus       344 wd~~~~~~~~~~-~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-~h~~~v~~~~~~  411 (500)
                      |.+.... +... +..|...++|.++++....+++++. ..+.+|+....+....|. ||+.....+.+.
T Consensus       198 y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g  265 (933)
T KOG2114|consen  198 YSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEMLVFSFG  265 (933)
T ss_pred             EEecCCC-cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEEEEecC
Confidence            7765333 3333 6667788999999986654544433 369999988766666777 777665555443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.75  E-value=0.00016  Score=69.32  Aligned_cols=74  Identities=22%  Similarity=0.311  Sum_probs=58.6

Q ss_pred             cccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816          358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (500)
Q Consensus       358 ~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (500)
                      ..+..|.+.+++|+...|+.|+.||+|.+||...+....+ +                            .....+.++|
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----------------------------a~~~P~~iaW  307 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K----------------------------AEFIPTLIAW  307 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e----------------------------ecccceEEEE
Confidence            4566799999999999999999999999999876532211 0                            0112344689


Q ss_pred             cCCCCEEEEEECCCcEEEEECCC
Q 010816          438 SADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       438 s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                      +|+|.++++|+..|.+.+||+.-
T Consensus       308 Hp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  308 HPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cCCCcEEEEEcCCceEEEEEeec
Confidence            99999999999999999999864

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.69  E-value=0.00026  Score=68.97  Aligned_cols=112  Identities=21%  Similarity=0.275  Sum_probs=79.8

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC
Q 010816          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA  439 (500)
Q Consensus       360 ~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  439 (500)
                      ...|.--+++..+.+++.|+.-|.+++|+-..++....-.+-...+.                          .+...|+
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~--------------------------~~~~vs~   86 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGIT--------------------------CVRSVSS   86 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceE--------------------------EEEEecc
Confidence            34455556778899999999999999999877765332111111111                          1124578


Q ss_pred             CCCEEEEEECCCcEEEEECCCccc---cc--cc-cCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816          440 DSRLLLSGSKDSTLKVWDIRTQKL---KQ--DL-PGHADEVFAVDWSPDGEKVASGGKDRVLKL  497 (500)
Q Consensus       440 ~~~~l~s~s~d~~v~iwd~~~~~~---~~--~~-~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i  497 (500)
                      +..++|.|+..|.|-++.+.....   +.  .+ ..|...|++++|++|+..+++|..-|+|.+
T Consensus        87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~  150 (726)
T KOG3621|consen   87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL  150 (726)
T ss_pred             hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence            888999999999999998765321   11  11 226789999999999999999999998864

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.65  E-value=0.0081  Score=62.71  Aligned_cols=108  Identities=18%  Similarity=0.397  Sum_probs=72.2

Q ss_pred             EEEEECCCCCEEEEEe----CC-CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816          364 NHVYFSPDGQWVASAS----FD-KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS  438 (500)
Q Consensus       364 ~~l~~sp~g~~lasgs----~D-g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  438 (500)
                      ++++|--||.++|+..    .+ +.|++||.+ |.+-.+    ..++                       ......++|-
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~----se~~-----------------------~~l~~~LsWk  250 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST----SEPV-----------------------EGLQHSLSWK  250 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc----cCcc-----------------------cccccceeec
Confidence            4688999999999842    23 899999976 432110    0111                       0112345899


Q ss_pred             CCCCEEEEEE---CCCcEEEEECCC---ccccccccCcccCEEEEEEcCCCCEEEE---EeCCCcEEEec
Q 010816          439 ADSRLLLSGS---KDSTLKVWDIRT---QKLKQDLPGHADEVFAVDWSPDGEKVAS---GGKDRVLKLWM  499 (500)
Q Consensus       439 ~~~~~l~s~s---~d~~v~iwd~~~---~~~~~~~~~h~~~V~~l~~s~dg~~l~s---~~~D~~v~iW~  499 (500)
                      |.|.++|+-.   +|+.|.+|.-..   ++..-.++....+|..++|+.++..||.   ......|++|.
T Consensus       251 Psgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt  320 (1265)
T KOG1920|consen  251 PSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT  320 (1265)
T ss_pred             CCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence            9999999854   466899997543   3333334444445899999999999988   55566699995

>smart00320 WD40 WD40 repeats

Probab=97.61  E-value=0.00021  Score=42.42  Aligned_cols=37  Identities=38%  Similarity=0.609  Sum_probs=32.6

Q ss_pred             eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       142 ~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      +...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4455667889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.58  E-value=0.00014  Score=43.17  Aligned_cols=36  Identities=42%  Similarity=0.718  Sum_probs=31.6

Q ss_pred             cccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          464 KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       464 ~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            344557888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.55  E-value=4.4e-05  Score=73.29  Aligned_cols=200  Identities=16%  Similarity=0.275  Sum_probs=115.5

Q ss_pred             CCCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCCcc-cccccCcccceEEEEeeeeecCCCCceEEEE----eCCCcE
Q 010816          150 KNWVLCIAWSADG--KHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSA----SKDGDA  222 (500)
Q Consensus       150 ~~~v~~v~~s~~~--~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~----s~dg~v  222 (500)
                      ...+.|++++-+.  ..++.|..+|.|.+-..+..... .....+|-...++++|++.+.    ..++.|    -.|..+
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDt----n~LAagldkhrnds~~  131 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDT----NHLAAGLDKHRNDSSL  131 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccH----HHHHhhhhhhcccCCc
Confidence            4567777776543  47788999999988876543222 233556777788899988632    345544    356789


Q ss_pred             EEEECCCCeE----EEEecC-ccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceee
Q 010816          223 RIWDVSLRKC----VICLSG-HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR  296 (500)
Q Consensus       223 ~iwd~~~~~~----~~~~~~-h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  296 (500)
                      .|||+.++-.    -..|.+ --....+++|..+. .+++|.....+.++|++.... +........+..+.+.|-    
T Consensus       132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~----  206 (783)
T KOG1008|consen  132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPF----  206 (783)
T ss_pred             cceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCC----
Confidence            9999976511    111222 22234466676544 466777788999999874311 000011112222222220    


Q ss_pred             eccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc-CCCCCCCceeeecc----cCcEEEEEECCC
Q 010816          297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE-PAVSKQPKTRMTGH----QQLVNHVYFSPD  371 (500)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd-~~~~~~~~~~~~~h----~~~v~~l~~sp~  371 (500)
                                                     .+++++ ...|+.+-+|| .+.-+.+...+...    .+.+..++|+|.
T Consensus       207 -------------------------------~~nY~c-s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt  254 (783)
T KOG1008|consen  207 -------------------------------SPNYFC-SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT  254 (783)
T ss_pred             -------------------------------CCCcee-ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence                                           123444 44599999999 44333333222222    235889999994


Q ss_pred             -CCEEEEEeC-CCcEEEEeCC
Q 010816          372 -GQWVASASF-DKSIKLWNGT  390 (500)
Q Consensus       372 -g~~lasgs~-Dg~i~lwd~~  390 (500)
                       ..++++.+. .++|+++|+.
T Consensus       255 rtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  255 RTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CcchhhhhccCcceEEEeccc
Confidence             345555555 4789999865

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.51  E-value=0.07  Score=48.31  Aligned_cols=61  Identities=25%  Similarity=0.380  Sum_probs=43.1

Q ss_pred             ccceeeEEcCCCCEEEEEE-CCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816          430 CCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR  493 (500)
Q Consensus       430 ~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~  493 (500)
                      ..+..+++++++.++++.| .-+.+.+||..+++++....-  ..+..|+-.+++ +++|.|.-.
T Consensus       217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCcc
Confidence            3355567899998887766 567899999999998776542  346677777666 666665543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.48  E-value=0.0042  Score=63.71  Aligned_cols=142  Identities=20%  Similarity=0.289  Sum_probs=92.0

Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecCCce-EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  335 (500)
                      ......|+-.|+..|+.+...+.+... |..++-...++                               ...++..+.|
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~a-------------------------------qlt~e~tflG  548 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFA-------------------------------QLTNEQTFLG  548 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCCcceeEeccccccc-------------------------------ccCCCceEEE
Confidence            345678888999999999988766543 44443322110                               0112346778


Q ss_pred             eCCCeEEEEcCCCCCCCceeee----cccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEee
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE  411 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~----~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  411 (500)
                      -.++.++.||++..........    .......|++-+.+| +||.|+.+|.||+||-...+....+.+-..||..|   
T Consensus       549 ls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~i---  624 (794)
T PF08553_consen  549 LSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGI---  624 (794)
T ss_pred             ECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEE---
Confidence            8899999999987542211111    223457788777666 69999999999999954333334455666777666   


Q ss_pred             eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                                              ..+.||+++++.+.. .+-|+++
T Consensus       625 ------------------------Dvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  625 ------------------------DVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             ------------------------EecCCCcEEEEeecc-eEEEEEE
Confidence                                    347899998876654 4555554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.41  E-value=4.1e-05  Score=73.49  Aligned_cols=160  Identities=22%  Similarity=0.402  Sum_probs=101.4

Q ss_pred             cccCCcccEEEEEEcC-CCCeEEEEe----CCCcEEEEeCCCC--cee--EEecC-CCCCEEEEEEcCCCCEEEEEeCCC
Q 010816          103 TIAGHTEAVLSVAFSP-DGRQLASGS----GDTTVRLWDLNTQ--TPM--FKCTG-HKNWVLCIAWSADGKHLVSGSKAG  172 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp-~~~~lat~~----~d~~i~iwd~~~~--~~~--~~~~~-h~~~v~~v~~s~~~~~l~s~~~d~  172 (500)
                      +..+|..+.++++|++ |.+.||.|-    .|..+.|||+.+.  .|.  ..+.+ -.....+++|-.+.++|++|....
T Consensus        97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr  176 (783)
T KOG1008|consen   97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR  176 (783)
T ss_pred             ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence            3467888999999998 456777772    4678999999876  222  11222 334566888988888999999889


Q ss_pred             eEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEE-CCCCeEEEEecCc-----cccEEEE
Q 010816          173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD-VSLRKCVICLSGH-----TLAVTCV  246 (500)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd-~~~~~~~~~~~~h-----~~~v~~~  246 (500)
                      .++++|++..-....  .-.++.+.++...|...    .+++ ...||.|.+|| .+.-+......-|     ...+..+
T Consensus       177 ~~~ifdlRqs~~~~~--svnTk~vqG~tVdp~~~----nY~c-s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~  249 (783)
T KOG1008|consen  177 SVHIFDLRQSLDSVS--SVNTKYVQGITVDPFSP----NYFC-SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFAL  249 (783)
T ss_pred             hhhhhhhhhhhhhhh--hhhhhhcccceecCCCC----Ccee-ccccCceeeccchhhhccHHHHHhhCCCCcccceeeE
Confidence            999999863211111  11223445555555322    2444 45599999999 3332211111111     2347888


Q ss_pred             EeCC--CCeEEEEeCC-CeEEEEeCC
Q 010816          247 KWGG--DGVIYTGSQD-CTIKVWETT  269 (500)
Q Consensus       247 ~~~~--~~~l~t~~~d-g~i~lwd~~  269 (500)
                      +|.|  .|.+++...| ++|+++|+.
T Consensus       250 aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  250 AYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             EeccCCcchhhhhccCcceEEEeccc
Confidence            9987  4677777765 689999874

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.38  E-value=0.14  Score=48.81  Aligned_cols=67  Identities=25%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             cCCCCeEEEE---------eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc
Q 010816          117 SPDGRQLASG---------SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (500)
Q Consensus       117 sp~~~~lat~---------~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~  185 (500)
                      |||+++++..         +..+.+.|||+++++... +......+....|+|+|+.++-.. ++.|.+++..++...
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence            5777776653         234578899999865432 222256788899999999988775 688999988776443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.26  E-value=0.25  Score=49.33  Aligned_cols=136  Identities=14%  Similarity=0.132  Sum_probs=76.9

Q ss_pred             CCeEEEEcCCC----CCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeee
Q 010816          338 DFTMFLWEPAV----SKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL  412 (500)
Q Consensus       338 d~~v~~wd~~~----~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  412 (500)
                      ++.|.+.|...    .... ...-.-......++++|||++++++ ..+.+|.|.|+.+.+...  .+.-.+-..+.-  
T Consensus       295 gn~V~VID~~t~~~~~~~v-~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~--~~~~~~~~~vva--  369 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSAL-TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF--DGKIKPRDAVVA--  369 (635)
T ss_pred             CCEEEEEECCccccCCcce-EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh--hccCCccceEEE--
Confidence            56788999765    1111 1222223557789999999987655 458999999998754311  000000000000  


Q ss_pred             eeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC----------ccccccccCccc-----CEEEE
Q 010816          413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT----------QKLKQDLPGHAD-----EVFAV  477 (500)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~----------~~~~~~~~~h~~-----~V~~l  477 (500)
                                  ...........+|.++|....|-..|..|-.||+.+          ...+.++.-|..     ..-+=
T Consensus       370 ------------evevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~  437 (635)
T PRK02888        370 ------------EPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE  437 (635)
T ss_pred             ------------eeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence                        000001111236788898888889999999999876          233343433322     11111


Q ss_pred             EEcCCCCEEEEEe
Q 010816          478 DWSPDGEKVASGG  490 (500)
Q Consensus       478 ~~s~dg~~l~s~~  490 (500)
                      .-.|||+||++..
T Consensus       438 t~~~dgk~l~~~n  450 (635)
T PRK02888        438 TKEADGKWLVSLN  450 (635)
T ss_pred             cCCCCCCEEEEcc
Confidence            2367888888764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.25  E-value=0.27  Score=49.46  Aligned_cols=111  Identities=18%  Similarity=0.172  Sum_probs=64.7

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCceeEEecCCC-CCEE---E-------EEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVL---C-------IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~---~-------v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      +..|+.++.++.|.=.|..+++.+....... ..+.   +       +++  .+..++.++.|+.+...|.++|+..-..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4567777778888888998888776543211 1111   1       122  2356778889999999999999865322


Q ss_pred             cc-CcccceEEEEeeeeecCCCCceEEEEe------CCCcEEEEECCCCeEEEEe
Q 010816          189 LS-GHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICL  236 (500)
Q Consensus       189 ~~-~~~~~v~~~~~~~~~~~~~~~~~~s~s------~dg~v~iwd~~~~~~~~~~  236 (500)
                      -. .+... ..+.-.|.-.   ..+++.+.      .+|.|.-+|.++++.+-.+
T Consensus       147 ~~~~~~~~-~~~tssP~v~---~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       147 KNGDYKAG-YTITAAPLVV---KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             cccccccc-ccccCCcEEE---CCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            11 11100 0111122211   12445443      3688999999998876553

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.09  E-value=0.29  Score=46.96  Aligned_cols=73  Identities=23%  Similarity=0.303  Sum_probs=50.9

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc-------------------------------------------eeEEe
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-------------------------------------------PMFKC  146 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~-------------------------------------------~~~~~  146 (500)
                      .|+.+.|.++..-||.|-..|.|.||.+...+                                           |+..+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47889999999999999999999998652110                                           11122


Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      ....++|++++.| |=.++|.|..+|.+.|.|++...
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPa  118 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPA  118 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCe
Confidence            2346789999997 55599999999999999996544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.09  E-value=0.3  Score=46.90  Aligned_cols=49  Identities=16%  Similarity=0.259  Sum_probs=40.9

Q ss_pred             eecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc
Q 010816          356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP  404 (500)
Q Consensus       356 ~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~  404 (500)
                      +......+.+++.+|++++.|+...=|+|.++|+.++..++.+||-...
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA  351 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA  351 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence            3344556889999999999999877899999999999999999986543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.04  E-value=0.12  Score=50.24  Aligned_cols=112  Identities=13%  Similarity=0.210  Sum_probs=53.6

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEE-E
Q 010816          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW-D  226 (500)
Q Consensus       148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iw-d  226 (500)
                      ........++++|+|+.++. +.||.-.++.....+.      ...+.-....|.+      ..+|++-...++|+|+ +
T Consensus        30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~------k~~G~g~~~vw~~------~n~yAv~~~~~~I~I~kn   96 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN------KAFGSGLSFVWSS------RNRYAVLESSSTIKIYKN   96 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE------EEEEE-SEEEE-T------SSEEEEE-TTS-EEEEET
T ss_pred             CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc------cccCceeEEEEec------CccEEEEECCCeEEEEEc
Confidence            34556789999999998888 4577777776332211      1122233455654      2468877778888886 3


Q ss_pred             CCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEe
Q 010816          227 VSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL  277 (500)
Q Consensus       227 ~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~  277 (500)
                      ..... ...+.- ...+..+..   |.++....++.|.+||+.+++.++.+
T Consensus        97 ~~~~~-~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i  142 (443)
T PF04053_consen   97 FKNEV-VKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRI  142 (443)
T ss_dssp             TEE-T-T------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEE
T ss_pred             Ccccc-ceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEE
Confidence            32111 111111 112333322   44444444457888888887766543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.04  E-value=0.0015  Score=65.24  Aligned_cols=105  Identities=20%  Similarity=0.346  Sum_probs=79.0

Q ss_pred             EEECCCCCEEEEEeC----CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC
Q 010816          366 VYFSPDGQWVASASF----DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS  441 (500)
Q Consensus       366 l~~sp~g~~lasgs~----Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  441 (500)
                      .+|+|...++|+++.    .|+|.||- ++|+.-          ..+.                  .+-..+.+.|+|..
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq----------r~Vt------------------~P~hatSLCWHpe~   71 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ----------RDVT------------------YPVHATSLCWHPEE   71 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCC----------cccc------------------cceehhhhccChHH
Confidence            478999999988764    35666662 333321          1110                  01112335789998


Q ss_pred             CEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          442 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       442 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      -.|+.|=.-|.+.+|...+.+.......|...|..+.||++|..|.|+..-|.|.+|.
T Consensus        72 ~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr  129 (1416)
T KOG3617|consen   72 FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR  129 (1416)
T ss_pred             HHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence            8999998899999999988777666677999999999999999999999999999995

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.03  E-value=0.0017  Score=54.87  Aligned_cols=104  Identities=20%  Similarity=0.178  Sum_probs=67.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC
Q 010816          371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD  450 (500)
Q Consensus       371 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d  450 (500)
                      -+..+++|+.||.|++|....      +..|...+ ...++.+.+               .+   .--.++.+..+++.|
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~------~g~~~d~~-~s~~e~i~~---------------~I---p~~~~~~~~c~~~~d  123 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNL------EGAHSDRV-CSGEESIDL---------------GI---PNGRDSSLGCVGAQD  123 (238)
T ss_pred             cCceEEeecccceEEEecCCc------cchHHHhh-hccccccee---------------cc---ccccccceeEEeccC
Confidence            356799999999999998752      11111111 111111111               00   112244578889999


Q ss_pred             CcEEEEECCCccccccccCcc-cCEEEEEEcCCCCEEEEE--eCCCcEEEec
Q 010816          451 STLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGEKVASG--GKDRVLKLWM  499 (500)
Q Consensus       451 ~~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l~s~--~~D~~v~iW~  499 (500)
                      |.||.|+++..+.+.....|. ..+..+..+..++.|+++  |.|.+++.|.
T Consensus       124 g~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~  175 (238)
T KOG2444|consen  124 GRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN  175 (238)
T ss_pred             CceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence            999999999988887777777 555555556666788888  8888888886

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.95  E-value=0.12  Score=51.45  Aligned_cols=146  Identities=13%  Similarity=0.085  Sum_probs=78.3

Q ss_pred             EEcCCCCeEEEE-eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcc
Q 010816          115 AFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK  193 (500)
Q Consensus       115 ~~sp~~~~lat~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  193 (500)
                      =++|||+.+... -..+.+.+.|.++.+...+..--. ...-++++++|+++++.+++.       +.+......-.+-.
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~  270 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAER  270 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCc-------ccCcceeeeccccC
Confidence            356788766433 345678888888766555443222 235678899999998887532       11211111001111


Q ss_pred             cceEEEEeee-eecCCCCceEEEEeCCCcEEEEECCC-----CeEEEEecCccccEEEEEeCCCCe--EEEEeCCCeEEE
Q 010816          194 KWITGISWEP-VHLNAPCRRFVSASKDGDARIWDVSL-----RKCVICLSGHTLAVTCVKWGGDGV--IYTGSQDCTIKV  265 (500)
Q Consensus       194 ~~v~~~~~~~-~~~~~~~~~~~s~s~dg~v~iwd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~--l~t~~~dg~i~l  265 (500)
                      ..+..+.|.. .....+++....  .++.|.+.|.++     .+.+..+. -......+.++|||.  ++++..+.++.+
T Consensus       271 d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSV  347 (635)
T PRK02888        271 DWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTV  347 (635)
T ss_pred             ceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEE
Confidence            1122222110 011122322222  356799999887     33333332 223345678899984  556667899999


Q ss_pred             EeCCCC
Q 010816          266 WETTQG  271 (500)
Q Consensus       266 wd~~~~  271 (500)
                      .|+.+.
T Consensus       348 IDv~k~  353 (635)
T PRK02888        348 IDVRKL  353 (635)
T ss_pred             EEChhh
Confidence            998653

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.95  E-value=0.23  Score=43.24  Aligned_cols=135  Identities=17%  Similarity=0.112  Sum_probs=77.5

Q ss_pred             CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEE
Q 010816          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS  200 (500)
Q Consensus       121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~  200 (500)
                      .+++.|+..+.++--|..++....... -...+.+-+.- -|+.++.|.+.|.+.+-+.++|...........-.+.   
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~---   98 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR---   98 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc---
Confidence            456667777777777776666544321 12223222211 3678999999999999999998643321111111111   


Q ss_pred             eeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCCeE
Q 010816          201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTI  263 (500)
Q Consensus       201 ~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i  263 (500)
                        +. ...+...+..|+.|++....|.++..|+...+-....-.+-...+ ++.|+.+...|.+
T Consensus        99 --a~-~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen   99 --AQ-CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             --eE-EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence              11 112456788899999999999999998876542211111111222 4556666555544

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.95  E-value=0.31  Score=44.83  Aligned_cols=273  Identities=17%  Similarity=0.162  Sum_probs=126.3

Q ss_pred             CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCCccccc-cc-CcccceE
Q 010816          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTGKPSGNP-LS-GHKKWIT  197 (500)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~-~~-~~~~~v~  197 (500)
                      +.+.|+|.++++.+-.+..  +..-.+..+||++.+++++          ..-.|.+||..+-...... +. .|...  
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~--   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ--   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe--
Confidence            3688888888776554432  2233466789999888643          3446999999875432211 11 11110  


Q ss_pred             EEEee-eeecCCCCceEEE--EeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCC-CCee
Q 010816          198 GISWE-PVHLNAPCRRFVS--ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-QGKL  273 (500)
Q Consensus       198 ~~~~~-~~~~~~~~~~~~s--~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~-~~~~  273 (500)
                      .+... -...+.+++.++.  .+-..+|-|-|+..++.+.++.-  ..+..+--.++..+.+-+.||++....+. .|+.
T Consensus        93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred             ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence            00000 0001112222221  12223444455555555443321  11222222234457888999998888876 4554


Q ss_pred             EEEeecCCceEEEEEecCcc-ee-eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC
Q 010816          274 IRELKGHGHWVNSLALSTEY-AL-RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ  351 (500)
Q Consensus       274 ~~~~~~~~~~v~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~  351 (500)
                      .+...       . .|.++. .+ ....+                         ......++--+..|.|+--|+.....
T Consensus       171 ~~~~t-------~-~F~~~~dp~f~~~~~-------------------------~~~~~~~~F~Sy~G~v~~~dlsg~~~  217 (342)
T PF06433_consen  171 AQKST-------K-VFDPDDDPLFEHPAY-------------------------SRDGGRLYFVSYEGNVYSADLSGDSA  217 (342)
T ss_dssp             EEEEE-------E-ESSTTTS-B-S--EE-------------------------ETTTTEEEEEBTTSEEEEEEETTSSE
T ss_pred             eEeec-------c-ccCCCCcccccccce-------------------------ECCCCeEEEEecCCEEEEEeccCCcc
Confidence            32110       1 122110 00 00000                         01123444456677776655433221


Q ss_pred             Cc-eee---e---cccCcE----EEEEECCCCCEEEEE---eCCC-------cEEEEeCCCCceEEEEeCCcccEEEEEe
Q 010816          352 PK-TRM---T---GHQQLV----NHVYFSPDGQWVASA---SFDK-------SIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (500)
Q Consensus       352 ~~-~~~---~---~h~~~v----~~l~~sp~g~~lasg---s~Dg-------~i~lwd~~~~~~~~~~~~h~~~v~~~~~  410 (500)
                      .. ...   .   .-..+-    .-+++++..+.|..-   +.++       .|.++|+.+++.+..+.. ..++.++  
T Consensus       218 ~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si--  294 (342)
T PF06433_consen  218 KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSI--  294 (342)
T ss_dssp             EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEE--
T ss_pred             cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceE--
Confidence            00 000   0   001111    126677654433332   1222       488889999888776652 1122223  


Q ss_pred             eeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEEECCCccccccccC
Q 010816          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDLPG  469 (500)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iwd~~~~~~~~~~~~  469 (500)
                                               +.+.+.+ +|++.+ .++.+.+||..+++++.++.+
T Consensus       295 -------------------------~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  295 -------------------------AVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             -------------------------EEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             -------------------------EEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence                                     3355554 554444 578999999999998877654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.89  E-value=0.0047  Score=52.31  Aligned_cols=105  Identities=15%  Similarity=0.222  Sum_probs=68.3

Q ss_pred             CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEE-EEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc-cEE
Q 010816          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH-VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVY  406 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~-l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~-~v~  406 (500)
                      ...++.|+.+|.|.+|..............-...|.+ +.--.++.+..+++.||.||.|+...++.+.....|+. ++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            3568999999999999865322211111111222322 22334567889999999999999998888776666652 221


Q ss_pred             EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE--ECCCcEEEEECCC
Q 010816          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG--SKDSTLKVWDIRT  460 (500)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--s~d~~v~iwd~~~  460 (500)
                      ..                           ..+..+++++.+  |.|..++.|++..
T Consensus       150 ~~---------------------------ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 EL---------------------------IVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ee---------------------------EEecCCceEEeeccccchhhhhcchhh
Confidence            11                           224567778887  8888888888764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.87  E-value=0.088  Score=51.04  Aligned_cols=102  Identities=20%  Similarity=0.189  Sum_probs=54.7

Q ss_pred             EEEEeeCCCe--EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC-CCc--EEEEeCCCCceEEEEeCCcccE
Q 010816          331 RLVSGSDDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKS--IKLWNGTTGKFVAVFRGHVGPV  405 (500)
Q Consensus       331 ~~~s~s~d~~--v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~-Dg~--i~lwd~~~~~~~~~~~~h~~~v  405 (500)
                      .+++...|+.  |++.|+....  ..++......-..=.|+|||+.|+-.+. .|.  |.+++.+.+.... +.-..+. 
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~-  327 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGG-  327 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCC-
Confidence            4556666665  4555654433  2223333333335579999998886654 443  5555655543311 1100000 


Q ss_pred             EEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC-Cc--EEEEECCCcc
Q 010816          406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-ST--LKVWDIRTQK  462 (500)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d-~~--v~iwd~~~~~  462 (500)
                                              .  ....|||||++++..+.+ |.  |.+.|+.++.
T Consensus       328 ------------------------~--~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         328 ------------------------N--SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             ------------------------C--cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence                                    0  012579999999977743 43  6666665554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.84  E-value=0.53  Score=45.92  Aligned_cols=138  Identities=14%  Similarity=0.136  Sum_probs=74.6

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE-eCCCCCccccc
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW-DPQTGKPSGNP  188 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w-d~~~~~~~~~~  188 (500)
                      ....+.++|+|+.++. ++||...|+.....+....     +.-....|.+.+ .+|+-...++|.++ +.+........
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~  106 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIK  106 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT----
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEc
Confidence            3567899999999888 6788888888443333221     223457788844 57776668889996 33221100001


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeC
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET  268 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~  268 (500)
                      +.   ..+..+-        .+..+... .++.|.+||..+++.+..+.-.  +|..+.|++++.+++-..+..+.+++.
T Consensus       107 ~~---~~~~~If--------~G~LL~~~-~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~  172 (443)
T PF04053_consen  107 LP---FSVEKIF--------GGNLLGVK-SSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKY  172 (443)
T ss_dssp             -S---S-EEEEE---------SSSEEEE-ETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred             CC---cccceEE--------cCcEEEEE-CCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence            11   1122221        12344444 4448999999999998877643  488999999986665555667777764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.84  E-value=0.47  Score=45.22  Aligned_cols=147  Identities=19%  Similarity=0.247  Sum_probs=76.6

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE-EecC-------C---------CCCEEEEEEcCCCCEEEEEeC
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-KCTG-------H---------KNWVLCIAWSADGKHLVSGSK  170 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~-~~~~-------h---------~~~v~~v~~s~~~~~l~s~~~  170 (500)
                      ...+....|+|+|+.+|-.. ++.|.+++..++.... +..|       -         -+.-..+-|||||++||....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            45677899999999999875 5789999887664331 1112       0         012256889999999988765


Q ss_pred             C-CeEEEEeCC---CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC--cEEEEECCCCeEEE-E-e---cCc
Q 010816          171 A-GELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--DARIWDVSLRKCVI-C-L---SGH  239 (500)
Q Consensus       171 d-~~i~~wd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg--~v~iwd~~~~~~~~-~-~---~~h  239 (500)
                      | ..|+.+.+.   ....       ..-.+..+.+ |.          .|..+-  .+.|+|+.+++... . .   ..-
T Consensus       121 d~~~v~~~~~~~~~~~~~-------~yp~~~~~~Y-Pk----------~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~  182 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDS-------QYPEVESIRY-PK----------AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ  182 (353)
T ss_dssp             E-TTS-EEEEEEESSSTE-------SS-EEEEEE---B----------TTS---EEEEEEEESSSTCCCEE---HHHHTS
T ss_pred             CCcCCceEEeeccCCccc-------cCCccccccc-CC----------CCCcCCceEEEEEECCCCcEEEeeeccccCCC
Confidence            4 334443321   1100       0001222222 10          112222  35567887776422 1 1   233


Q ss_pred             cccEEEEEeCCCCe-EEE--EeCCC---eEEEEeCCCCee
Q 010816          240 TLAVTCVKWGGDGV-IYT--GSQDC---TIKVWETTQGKL  273 (500)
Q Consensus       240 ~~~v~~~~~~~~~~-l~t--~~~dg---~i~lwd~~~~~~  273 (500)
                      ...+..+.|.+++. ++.  ..++.   .+.++|..++..
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~  222 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET  222 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence            45678889988775 443  33332   355667666543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.78  E-value=0.48  Score=44.51  Aligned_cols=94  Identities=17%  Similarity=0.128  Sum_probs=37.4

Q ss_pred             eCCCCceeEEecCCCC-----CEEEEEEcCCCCEEEEE-eCCCe--EEEEeCCCCCcccccccCcccceEEEEeeeeecC
Q 010816          136 DLNTQTPMFKCTGHKN-----WVLCIAWSADGKHLVSG-SKAGE--LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN  207 (500)
Q Consensus       136 d~~~~~~~~~~~~h~~-----~v~~v~~s~~~~~l~s~-~~d~~--i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  207 (500)
                      |..|+..+..++.+..     ..+.=+|.+||++|+-+ ..||.  +.+-|+.+++..+..-... ....+..++|    
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~----   90 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG-DNTFGGFLSP----   90 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-T----
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC-CCccceEEec----
Confidence            4556666655543222     22223577889766554 44654  5556888776433211111 1111222222    


Q ss_pred             CCCceEEEEeCCCcEEEEECCCCeEEEE
Q 010816          208 APCRRFVSASKDGDARIWDVSLRKCVIC  235 (500)
Q Consensus       208 ~~~~~~~s~s~dg~v~iwd~~~~~~~~~  235 (500)
                       ..+.++-......++-.|+.+.+....
T Consensus        91 -~~~~~~Yv~~~~~l~~vdL~T~e~~~v  117 (386)
T PF14583_consen   91 -DDRALYYVKNGRSLRRVDLDTLEERVV  117 (386)
T ss_dssp             -TSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred             -CCCeEEEEECCCeEEEEECCcCcEEEE
Confidence             223443344456777788887765333

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.01  Score=57.64  Aligned_cols=94  Identities=14%  Similarity=0.181  Sum_probs=67.7

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (500)
Q Consensus       361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  440 (500)
                      ..+..+.|+|.-.++|.+..+|.|-+..+. .+-+.++.-|..++.                          +.++|.||
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~--------------------------~sL~W~~D   73 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVT--------------------------ASLCWRPD   73 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccc--------------------------eeeeecCC
Confidence            346778999999999999999988877665 333333333333332                          23489999


Q ss_pred             CCEEEEEECCCcEEEEECCCccccccc-cCcccCEEEEEEcC
Q 010816          441 SRLLLSGSKDSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSP  481 (500)
Q Consensus       441 ~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~h~~~V~~l~~s~  481 (500)
                      |++||.|-.||+|++.|++++..+... ..-...|...-|++
T Consensus        74 GkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   74 GKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             CCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            999999999999999999998766542 11234677777764

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.72  E-value=0.35  Score=42.13  Aligned_cols=110  Identities=21%  Similarity=0.212  Sum_probs=69.4

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc-cc
Q 010816          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TL  241 (500)
Q Consensus       163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h-~~  241 (500)
                      .+++.|+-.+.+..-|..+|+......-+-.-.-..+.        -++.++.|...|.+++.+.+++.....+..- ..
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--------vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v   95 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--------VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV   95 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--------ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence            46677777888888888888654332222211111111        1245788999999999999998655544321 11


Q ss_pred             cEEE-EEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCC
Q 010816          242 AVTC-VKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG  281 (500)
Q Consensus       242 ~v~~-~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~  281 (500)
                      .+.+ ++++ .+.|+.|+.|++.+.-|.++...+...+-.+
T Consensus        96 k~~a~~d~~-~glIycgshd~~~yalD~~~~~cVykskcgG  135 (354)
T KOG4649|consen   96 KVRAQCDFD-GGLIYCGSHDGNFYALDPKTYGCVYKSKCGG  135 (354)
T ss_pred             ccceEEcCC-CceEEEecCCCcEEEecccccceEEecccCC
Confidence            2222 2232 3678999999999999998877776655433

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.039  Score=52.72  Aligned_cols=53  Identities=26%  Similarity=0.448  Sum_probs=43.1

Q ss_pred             CCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          440 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       440 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      ...++++||.+|.||+||-...+...-++|-..+|..++.+.||++|+.....
T Consensus       440 ~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  440 ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence            34589999999999999975555556688989999999999999998765543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.69  E-value=0.68  Score=45.00  Aligned_cols=40  Identities=13%  Similarity=0.207  Sum_probs=31.8

Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (500)
Q Consensus       360 ~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~  399 (500)
                      ...+..+++||+|+++|.-..+|.+.+.+..-.+.+..+.
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence            3579999999999999999999999998765555544443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.68  E-value=0.15  Score=38.39  Aligned_cols=100  Identities=17%  Similarity=0.220  Sum_probs=57.8

Q ss_pred             EEEEEECC---CC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816          363 VNHVYFSP---DG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS  438 (500)
Q Consensus       363 v~~l~~sp---~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  438 (500)
                      |+++++..   || +-|++||.|..||+|+-.  +.+..+..+. .+..+                           ...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~-~v~~L---------------------------~~~   51 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD-KVTSL---------------------------CSL   51 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc-ceEEE---------------------------EEc
Confidence            45565543   43 689999999999999754  3333333222 22222                           112


Q ss_pred             CCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEc---CCC-CEEEEEeCCCcEE
Q 010816          439 ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS---PDG-EKVASGGKDRVLK  496 (500)
Q Consensus       439 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s---~dg-~~l~s~~~D~~v~  496 (500)
                       .+..++.|-.+|+|-+|+-......-+ +  +..+.++.+.   .|| .-|++|=.+|.|-
T Consensus        52 -~~~~F~Y~l~NGTVGvY~~~~RlWRiK-S--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   52 -GGGRFAYALANGTVGVYDRSQRLWRIK-S--KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -CCCEEEEEecCCEEEEEeCcceeeeec-c--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             235688899999999997644332211 1  2235555432   233 2578887778764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.65  E-value=0.047  Score=56.32  Aligned_cols=133  Identities=15%  Similarity=0.226  Sum_probs=77.3

Q ss_pred             eCCCeEEEEcCCCCCCCceeeecccCc-EEEEEECC-----CCCEEEEEeCCCcEEEEeCCCCc-eEEEEeCCcccEEEE
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMTGHQQL-VNHVYFSP-----DGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQI  408 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~~h~~~-v~~l~~sp-----~g~~lasgs~Dg~i~lwd~~~~~-~~~~~~~h~~~v~~~  408 (500)
                      .....++-.|+..++ .......|.+. |..++-..     +..--..|-.++.+..||.+-.. .+..-..|       
T Consensus       501 ~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k-------  572 (794)
T PF08553_consen  501 NNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK-------  572 (794)
T ss_pred             CCCCceEEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc-------
Confidence            345667777765443 23333334332 44433211     12234566678889999987532 11100111       


Q ss_pred             EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEE
Q 010816          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVAS  488 (500)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s  488 (500)
                            .+....++.|.          +.+ ...+||.|+.+|.||+||--..+....++|-.++|.+|+.+.||+||+.
T Consensus       573 ------~Y~~~~~Fs~~----------aTt-~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwila  635 (794)
T PF08553_consen  573 ------QYSSKNNFSCF----------ATT-EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILA  635 (794)
T ss_pred             ------ccccCCCceEE----------Eec-CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence                  11111222221          223 3458999999999999996544445567888899999999999999877


Q ss_pred             EeCCC
Q 010816          489 GGKDR  493 (500)
Q Consensus       489 ~~~D~  493 (500)
                      .....
T Consensus       636 Tc~ty  640 (794)
T PF08553_consen  636 TCKTY  640 (794)
T ss_pred             eecce
Confidence            66544

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.56  E-value=0.01  Score=61.28  Aligned_cols=80  Identities=23%  Similarity=0.314  Sum_probs=61.6

Q ss_pred             EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEe
Q 010816          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF  410 (500)
Q Consensus       331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~  410 (500)
                      .++.|+..|.+...|....-.+...-..-+.+|++++|+.+|..++.|-.+|.|.+||...++.+..+..|..+...+-+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~  180 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF  180 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence            46778888888887765432221222223568999999999999999999999999999999999988888887766643

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.55  E-value=0.6  Score=42.68  Aligned_cols=148  Identities=15%  Similarity=0.139  Sum_probs=83.7

Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc---------
Q 010816          118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP---------  188 (500)
Q Consensus       118 p~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---------  188 (500)
                      ..++.|+.|..+| +.++++......... .+...|..+...++-+.|++-+ |+.+.++++..-......         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3578899998888 899998322222222 1233499999999877776665 599999997653322100         


Q ss_pred             ----ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-----eEEEEecCccccEEEEEeCCCCeEEEEeC
Q 010816          189 ----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-----KCVICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (500)
Q Consensus       189 ----~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~l~t~~~  259 (500)
                          .......+...+   ........+.+.....+.+.+|.....     +....+. -...+.++.|..+ .++.|..
T Consensus        82 ~~~~~~~~~~~v~~f~---~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~-~i~v~~~  156 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFA---VNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN-KICVGTS  156 (275)
T ss_pred             cccccccccCCeeEEe---eccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC-EEEEEeC
Confidence                001111222222   001112234445555668888877542     2333332 2356778888844 5555554


Q ss_pred             CCeEEEEeCCCCeeE
Q 010816          260 DCTIKVWETTQGKLI  274 (500)
Q Consensus       260 dg~i~lwd~~~~~~~  274 (500)
                      + ...+.|+.++...
T Consensus       157 ~-~f~~idl~~~~~~  170 (275)
T PF00780_consen  157 K-GFYLIDLNTGSPS  170 (275)
T ss_pred             C-ceEEEecCCCCce
Confidence            4 4677888876543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.39  E-value=0.013  Score=36.58  Aligned_cols=32  Identities=13%  Similarity=0.156  Sum_probs=28.4

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (500)
Q Consensus       361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~  393 (500)
                      ..|.+++|+|...+||.|+.||.|.+|.+ +++
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            45899999999999999999999999988 443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.31  E-value=0.31  Score=36.74  Aligned_cols=94  Identities=18%  Similarity=0.271  Sum_probs=54.7

Q ss_pred             eCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhc
Q 010816          248 WGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (500)
Q Consensus       248 ~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (500)
                      |..+  ..|+.|+.|..||+|+-  ...+.++.... .|.++....                                  
T Consensus        10 ~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~-~v~~L~~~~----------------------------------   52 (111)
T PF14783_consen   10 FDGDGENELLVGSDDFEIRVFKG--DEIVAEITETD-KVTSLCSLG----------------------------------   52 (111)
T ss_pred             cCCCCcceEEEecCCcEEEEEeC--CcEEEEEeccc-ceEEEEEcC----------------------------------
Confidence            3444  46999999999999974  35555555433 344433221                                  


Q ss_pred             CCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEE-CCC--C-CEEEEEeCCCcEE
Q 010816          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF-SPD--G-QWVASASFDKSIK  385 (500)
Q Consensus       326 ~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~-sp~--g-~~lasgs~Dg~i~  385 (500)
                         ...|+.+..+|+|-+|+.....  . +.+. +..+.++++ ..+  | .-|++|=.+|.|-
T Consensus        53 ---~~~F~Y~l~NGTVGvY~~~~Rl--W-RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   53 ---GGRFAYALANGTVGVYDRSQRL--W-RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ---CCEEEEEecCCEEEEEeCccee--e-eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence               3468888889998888742211  1 1111 122555543 333  3 3577877777664

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.23  E-value=0.022  Score=35.62  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=28.4

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCC
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLN  138 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~  138 (500)
                      ...|.+++|+|...+||.|..||.|.|+.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999984

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.18  E-value=0.064  Score=53.05  Aligned_cols=117  Identities=17%  Similarity=0.202  Sum_probs=86.8

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE-EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~  186 (500)
                      ...|.--+++..+++++.|+.-|.+.+|+-.++.... ...+-.+.+..+..+++..++|.|+..|.|.++-++.+....
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            3445555677789999999999999999987765432 223344556667788888888999999999999776643221


Q ss_pred             c-----cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816          187 N-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (500)
Q Consensus       187 ~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~  229 (500)
                      .     .-..|...|+++.|++     +..++.+|...|+|..-.+..
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~-----~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSK-----NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecc-----cccEEeecCCCceEEEEEech
Confidence            1     1234788999999987     445899999999998877766

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.16  E-value=1.4  Score=44.45  Aligned_cols=117  Identities=13%  Similarity=0.046  Sum_probs=65.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEE---EEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC
Q 010816          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG---ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG  238 (500)
Q Consensus       162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~  238 (500)
                      +..|+.++.++.|.-.|..+|+..-+........+..   .............+++.++.|+.+.-.|..+++.+.....
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~  148 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN  148 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence            3466667777888888888886543211110000100   0000000001124677888999999999999988765432


Q ss_pred             --cc--ccEEEEEeCCCCeEEEEeC------CCeEEEEeCCCCeeEEEee
Q 010816          239 --HT--LAVTCVKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELK  278 (500)
Q Consensus       239 --h~--~~v~~~~~~~~~~l~t~~~------dg~i~lwd~~~~~~~~~~~  278 (500)
                        +.  ..+++.-.-.++.++.+..      +|.|.-+|..+|+.+..+.
T Consensus       149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence              11  1122111111456666543      6899999999999876653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.02  E-value=0.077  Score=53.77  Aligned_cols=103  Identities=20%  Similarity=0.182  Sum_probs=60.6

Q ss_pred             CcEEEEEECCCCCEEEEEe------CCC--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccc
Q 010816          361 QLVNHVYFSPDGQWVASAS------FDK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM  432 (500)
Q Consensus       361 ~~v~~l~~sp~g~~lasgs------~Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (500)
                      ..+.+.++||||+.+|..-      .|.  .|.+++. .+.......+.                             ..
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~-----------------------------~~  399 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH-----------------------------SL  399 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC-----------------------------CC
Confidence            4578899999999887665      243  4444443 22211111111                             12


Q ss_pred             eeeEEcCCCCEEEEEECC------------CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816          433 SLYSWSADSRLLLSGSKD------------STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  497 (500)
Q Consensus       433 ~~~~~s~~~~~l~s~s~d------------~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i  497 (500)
                      +..+|+|+|+.+++.+..            +.+.+.++..++...   ...+.|..+.|||||++|+... +++|++
T Consensus       400 t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        400 TRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            223789998877776532            233333444444332   2345799999999999988765 366654

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.01  E-value=0.26  Score=50.02  Aligned_cols=148  Identities=17%  Similarity=0.174  Sum_probs=81.5

Q ss_pred             CcccEEEEEEcCCCCeEEEEe------CCCc--EEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-------
Q 010816          107 HTEAVLSVAFSPDGRQLASGS------GDTT--VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-------  171 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~------~d~~--i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-------  171 (500)
                      ....+.+.+++|||+.+|...      .|+.  +.+++..... .....+.  ....-.|+|||+.|++.+..       
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence            334678999999999887654      2444  4444543322 2122332  37788999998888776532       


Q ss_pred             -----CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE---EECCCCeE-E---EEe-cC
Q 010816          172 -----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI---WDVSLRKC-V---ICL-SG  238 (500)
Q Consensus       172 -----~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i---wd~~~~~~-~---~~~-~~  238 (500)
                           +.+.+.++..+....    .....|..+.|+|     ++.+++... ++.|.+   -....+.. +   ..+ .+
T Consensus       425 ~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSp-----DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~  494 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS----RVPGPISELQLSR-----DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG  494 (591)
T ss_pred             ccCCCceEEEEeccCchhhh----ccCCCcCeEEECC-----CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence                 222222443332211    2245688999987     445555443 466665   22223321 1   011 12


Q ss_pred             ccccEEEEEeCCCCeEEEEeCCCeEEEEe
Q 010816          239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWE  267 (500)
Q Consensus       239 h~~~v~~~~~~~~~~l~t~~~dg~i~lwd  267 (500)
                      -...+.++.|.+++.|+.+..++.-.+|.
T Consensus       495 l~~~~~~l~W~~~~~L~V~~~~~~~~v~~  523 (591)
T PRK13616        495 LGDTAVSLDWRTGDSLVVGRSDPEHPVWY  523 (591)
T ss_pred             cCCccccceEecCCEEEEEecCCCCceEE
Confidence            22335778898888777766555444443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.97  E-value=0.1  Score=49.94  Aligned_cols=148  Identities=17%  Similarity=0.181  Sum_probs=92.8

Q ss_pred             CCCeEE-EEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCC--EE-----EEEeCCCeEEEEeCCCCCccccccc
Q 010816          119 DGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HL-----VSGSKAGELQCWDPQTGKPSGNPLS  190 (500)
Q Consensus       119 ~~~~la-t~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--~l-----~s~~~d~~i~~wd~~~~~~~~~~~~  190 (500)
                      +.++|. ++.....++--|++.++.+-..+-|.. |.-+.+.|+.+  .|     +.|-.|..|.-||++-.........
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            444444 344455677778888888877776665 77788888743  22     3455688899999863221000011


Q ss_pred             CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeC
Q 010816          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET  268 (500)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~  268 (500)
                      ......+.-.|+..... ..+.++.||.+|.||+||-.....-..+.+-..+|..+..+.+|..+.|..+..+-+-++
T Consensus       423 q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT  499 (644)
T ss_pred             eccccccccccceeeec-CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence            11111222222222222 235799999999999999643333445677778899888888887777778888877775

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.96  E-value=0.32  Score=46.69  Aligned_cols=97  Identities=15%  Similarity=0.160  Sum_probs=55.8

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC-
Q 010816          363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-  441 (500)
Q Consensus       363 v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-  441 (500)
                      |..+..++.|..+|-.+.+|.+.++=.+....-..++.-+..|.|-.+..      ...++... ..-.+-..+|+|+. 
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i------~~~~ftss-~~ltl~Qa~WHP~S~  178 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV------AERFFTSS-TSLTLKQAAWHPSSI  178 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc------cceeeccC-CceeeeeccccCCcc
Confidence            67788999999999999999877764322211122222222233221111      01111100 01112234789886 


Q ss_pred             --CEEEEEECCCcEEEEECCCcccccc
Q 010816          442 --RLLLSGSKDSTLKVWDIRTQKLKQD  466 (500)
Q Consensus       442 --~~l~s~s~d~~v~iwd~~~~~~~~~  466 (500)
                        ..|..-+.|+.||+||+...+.+..
T Consensus       179 ~D~hL~iL~sdnviRiy~lS~~telyl  205 (741)
T KOG4460|consen  179 LDPHLVLLTSDNVIRIYSLSEPTELYL  205 (741)
T ss_pred             CCceEEEEecCcEEEEEecCCcchhhc
Confidence              6788889999999999987665543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.83  E-value=2.6  Score=44.35  Aligned_cols=116  Identities=17%  Similarity=0.175  Sum_probs=68.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCcccccccCcc-------cceEEEEeeeee-----------cCCCCceEEEEeCCCcEE
Q 010816          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-------KWITGISWEPVH-----------LNAPCRRFVSASKDGDAR  223 (500)
Q Consensus       162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-------~~v~~~~~~~~~-----------~~~~~~~~~s~s~dg~v~  223 (500)
                      +..|+.++.++.|.-.|.++|+.+-+......       ....++.+....           .....++++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            55777788888898889888875432111000       001122221100           011234788899999999


Q ss_pred             EEECCCCeEEEEecCccccE----------------EEEEeCCCCeEEEEeC----------CCeEEEEeCCCCeeEEEe
Q 010816          224 IWDVSLRKCVICLSGHTLAV----------------TCVKWGGDGVIYTGSQ----------DCTIKVWETTQGKLIREL  277 (500)
Q Consensus       224 iwd~~~~~~~~~~~~h~~~v----------------~~~~~~~~~~l~t~~~----------dg~i~lwd~~~~~~~~~~  277 (500)
                      -.|.++++.+..+.. +..|                ++.-.--++.++.|+.          +|.|+-+|..+|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999988765532 1111                1100011456777653          688999999999988765


Q ss_pred             e
Q 010816          278 K  278 (500)
Q Consensus       278 ~  278 (500)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.73  E-value=0.88  Score=42.73  Aligned_cols=131  Identities=12%  Similarity=0.104  Sum_probs=75.4

Q ss_pred             CcEEEEECCCC----eEEEEe--cCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCe-eEEEeec-CCceEEEEEecC
Q 010816          220 GDARIWDVSLR----KCVICL--SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK-LIRELKG-HGHWVNSLALST  291 (500)
Q Consensus       220 g~v~iwd~~~~----~~~~~~--~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~-~~~~~~~-~~~~v~~~~~~~  291 (500)
                      |.+.++++...    ..+..+  ....++|+++.-- ++.|+.+ ..+.|.+|++...+ ....... ....+.++... 
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc-
Confidence            88999999873    122211  2345778888755 4454443 45899999988776 4332211 12234444332 


Q ss_pred             cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee--cccCcEEEEEEC
Q 010816          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--GHQQLVNHVYFS  369 (500)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~--~h~~~v~~l~~s  369 (500)
                                                           ++.++.|.....+.++...........+.  ....++.++.|-
T Consensus       139 -------------------------------------~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l  181 (321)
T PF03178_consen  139 -------------------------------------KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL  181 (321)
T ss_dssp             -------------------------------------TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE
T ss_pred             -------------------------------------ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe
Confidence                                                 24677777766666653222111111111  234568888888


Q ss_pred             CCCCEEEEEeCCCcEEEEeCC
Q 010816          370 PDGQWVASASFDKSIKLWNGT  390 (500)
Q Consensus       370 p~g~~lasgs~Dg~i~lwd~~  390 (500)
                      ++++.++.+..+|.+.++...
T Consensus       182 ~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  182 VDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -SSSEEEEEETTSEEEEEEE-
T ss_pred             cCCcEEEEEcCCCeEEEEEEC
Confidence            777799999999999999765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PHA02713 hypothetical protein; Provisional

Probab=95.63  E-value=1.9  Score=43.86  Aligned_cols=61  Identities=10%  Similarity=0.133  Sum_probs=35.5

Q ss_pred             eEEEEcCCC-CCC-CceeeecccCcEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCceEEEEeCCc
Q 010816          340 TMFLWEPAV-SKQ-PKTRMTGHQQLVNHVYFSPDGQWVASASFDK--SIKLWNGTTGKFVAVFRGHV  402 (500)
Q Consensus       340 ~v~~wd~~~-~~~-~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg--~i~lwd~~~~~~~~~~~~h~  402 (500)
                      .+..||+.. ... ....+.........+.+  +|+..++|+.|+  .+..||..+.+.......|.
T Consensus       481 ~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~  545 (557)
T PHA02713        481 CIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS  545 (557)
T ss_pred             eEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence            466788765 221 11222222222222333  688899999998  78888888877655444443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.51  E-value=2.6  Score=40.98  Aligned_cols=29  Identities=17%  Similarity=0.327  Sum_probs=26.1

Q ss_pred             ccEEEEEeCCCCeEEEEeCCCeEEEEeCC
Q 010816          241 LAVTCVKWGGDGVIYTGSQDCTIKVWETT  269 (500)
Q Consensus       241 ~~v~~~~~~~~~~l~t~~~dg~i~lwd~~  269 (500)
                      ..+.++.|..+..|+.-..||.+++||+.
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence            67888999988889999999999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.45  E-value=0.049  Score=56.51  Aligned_cols=97  Identities=20%  Similarity=0.261  Sum_probs=69.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816          371 DGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK  449 (500)
Q Consensus       371 ~g~~lasgs~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~  449 (500)
                      .+..++.|+.-|.+-..|.... .....-..-.++|.++                           +|+.+|++++.|-.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsv---------------------------afn~dg~~l~~G~~  150 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSV---------------------------AFNQDGSLLLAGLG  150 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceee---------------------------EecCCCceeccccC
Confidence            5667888888888888876542 1111111123444444                           67999999999999


Q ss_pred             CCcEEEEECCCccccccccCccc---CEEEEEEcCCCCEEEEEeCCCc
Q 010816          450 DSTLKVWDIRTQKLKQDLPGHAD---EVFAVDWSPDGEKVASGGKDRV  494 (500)
Q Consensus       450 d~~v~iwd~~~~~~~~~~~~h~~---~V~~l~~s~dg~~l~s~~~D~~  494 (500)
                      +|.|.+||+..++..+.+..|..   .|..+.|..++..+.++..-|.
T Consensus       151 ~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  151 DGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             CCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            99999999999888877666654   4556677788888888888775

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.21  E-value=0.61  Score=45.33  Aligned_cols=111  Identities=25%  Similarity=0.364  Sum_probs=60.5

Q ss_pred             EEEEcCCCCeEEEE-eCCCcEEEE--eCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC-CCe--EEEEeCCCCCccc
Q 010816          113 SVAFSPDGRQLASG-SGDTTVRLW--DLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGE--LQCWDPQTGKPSG  186 (500)
Q Consensus       113 ~~~~sp~~~~lat~-~~d~~i~iw--d~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~--i~~wd~~~~~~~~  186 (500)
                      .-+|+|||++||-. ..||...||  |+.++. +..+..-.+.-..=.|+|||+.++-.+. .|.  |.+.|++.+....
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r  320 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR  320 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence            45899999988755 456665554  666555 2233332333336679999998876554 444  5555666554322


Q ss_pred             ccccCcccceEEEEeeeeecCCCCceEEEEeC-CCc--EEEEECCCCe
Q 010816          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGD--ARIWDVSLRK  231 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~-dg~--v~iwd~~~~~  231 (500)
                      ....+....  ...|+     +++++++..+. +|.  |.+.|+.++.
T Consensus       321 iT~~~~~~~--~p~~S-----pdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         321 LTFSGGGNS--NPVWS-----PDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             eeccCCCCc--CccCC-----CCCCEEEEEeccCCceeeEEeccCCCC
Confidence            222221111  22333     35667766554 343  5555655444

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.21  E-value=0.71  Score=45.18  Aligned_cols=101  Identities=22%  Similarity=0.290  Sum_probs=61.7

Q ss_pred             EEEEEECCCCCEEEEE-eCCC----cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816          363 VNHVYFSPDGQWVASA-SFDK----SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (500)
Q Consensus       363 v~~l~~sp~g~~lasg-s~Dg----~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (500)
                      +....+||||+++|-+ +..|    .++++|+.+|+.+...      +....+                      ..+.|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~------i~~~~~----------------------~~~~W  177 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG------IENPKF----------------------SSVSW  177 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE------EEEEES----------------------EEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc------cccccc----------------------ceEEE
Confidence            4467899999998855 3444    5999999999765321      111111                      11378


Q ss_pred             cCCCCEEEEEECCC-----------cEEEEECCCcccc--ccccCcccC--EEEEEEcCCCCEEEEEeC
Q 010816          438 SADSRLLLSGSKDS-----------TLKVWDIRTQKLK--QDLPGHADE--VFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       438 s~~~~~l~s~s~d~-----------~v~iwd~~~~~~~--~~~~~h~~~--V~~l~~s~dg~~l~s~~~  491 (500)
                      .++++.|+....|.           .|++|++.+....  -.+.+....  ...+..++|+++|+....
T Consensus       178 ~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~  246 (414)
T PF02897_consen  178 SDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSS  246 (414)
T ss_dssp             CTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred             eCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEE
Confidence            99988776665433           3788888765432  222332222  568899999999875433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.14  E-value=3.6  Score=40.28  Aligned_cols=74  Identities=24%  Similarity=0.310  Sum_probs=47.9

Q ss_pred             ccEEEEEEcCCCCeEEEE-eCC----CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCC-----------
Q 010816          109 EAVLSVAFSPDGRQLASG-SGD----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG-----------  172 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~-~~d----~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~-----------  172 (500)
                      -.+...+++|||++||-+ +..    .+++|.|+++++.+...-... ....+.|.+|++.|+-...+.           
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            344578899999998855 322    469999999987654221111 112399999988776554332           


Q ss_pred             eEEEEeCCCCC
Q 010816          173 ELQCWDPQTGK  183 (500)
Q Consensus       173 ~i~~wd~~~~~  183 (500)
                      .|..|++.++.
T Consensus       203 ~v~~~~~gt~~  213 (414)
T PF02897_consen  203 QVYRHKLGTPQ  213 (414)
T ss_dssp             EEEEEETTS-G
T ss_pred             EEEEEECCCCh
Confidence            37778876654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.73  E-value=2.9  Score=39.29  Aligned_cols=130  Identities=16%  Similarity=0.143  Sum_probs=76.5

Q ss_pred             CcEEEEeCCCC----ceeE--EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-cccccccCcccceEEEEee
Q 010816          130 TTVRLWDLNTQ----TPMF--KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWE  202 (500)
Q Consensus       130 ~~i~iwd~~~~----~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~  202 (500)
                      |.|.++++...    ..+.  ......++|++++-- ++ +|+.+. .+.|.+|++...+ ............+.++...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence            88999999873    1221  123457889998865 34 444433 5899999988766 2221111122244444432


Q ss_pred             eeecCCCCceEEEEeCCCcEEEEECCC-CeEEEEec--CccccEEEEEeCCC-CeEEEEeCCCeEEEEeCC
Q 010816          203 PVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLS--GHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETT  269 (500)
Q Consensus       203 ~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~--~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~  269 (500)
                             ..+++.|..-..+.++.... ...+..+.  .....++++.+-.+ ..++.+..+|.+.++...
T Consensus       139 -------~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  139 -------KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -------TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             -------ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence                   24788888888888774432 22222222  23456788887633 388899999999998754

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.63  E-value=3.1  Score=42.39  Aligned_cols=53  Identities=21%  Similarity=0.283  Sum_probs=32.3

Q ss_pred             CCCEEEEEECCC-----cEEEEECCCcccccc--ccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816          440 DSRLLLSGSKDS-----TLKVWDIRTQKLKQD--LPGHADEVFAVDWSPDGEKVASGGKDRV  494 (500)
Q Consensus       440 ~~~~l~s~s~d~-----~v~iwd~~~~~~~~~--~~~h~~~V~~l~~s~dg~~l~s~~~D~~  494 (500)
                      ++.+.+.|+.|+     +|..||.++.+....  +......+..+.+  +++..+.||.|+.
T Consensus       475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN  534 (571)
T ss_pred             CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCc
Confidence            677888888776     378899887665432  2222333333333  4567778887764

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.41  E-value=5.1  Score=38.64  Aligned_cols=130  Identities=18%  Similarity=0.198  Sum_probs=83.1

Q ss_pred             EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---DKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (500)
Q Consensus       331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~---Dg~i~lwd~~~~~~~~~~~~h~~~v~~  407 (500)
                      ..+....+..|.+.|............+.  ....++++|+++.+..+..   ++++.+.|..+++.+.....-..+ ..
T Consensus        88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~  164 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG  164 (381)
T ss_pred             EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence            34555557888888854433322222333  4567899999977766554   688999999888876653322222 11


Q ss_pred             EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECCCccccc-c----ccCcccCEEEEEEcC
Q 010816          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKLKQ-D----LPGHADEVFAVDWSP  481 (500)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~-~----~~~h~~~V~~l~~s~  481 (500)
                                                 .+++|+|..++.+. .++.|.+.|.......+ .    ..-+ ..-..+.++|
T Consensus       165 ---------------------------~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~  216 (381)
T COG3391         165 ---------------------------VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDP  216 (381)
T ss_pred             ---------------------------EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECC
Confidence                                       25689999666655 78899999987766553 1    1111 2235788999


Q ss_pred             CCCEEEEEeC
Q 010816          482 DGEKVASGGK  491 (500)
Q Consensus       482 dg~~l~s~~~  491 (500)
                      +|+++...-.
T Consensus       217 ~g~~~yV~~~  226 (381)
T COG3391         217 DGNRVYVAND  226 (381)
T ss_pred             CCCEEEEEec
Confidence            9997765543

>PHA02713 hypothetical protein; Provisional

Probab=94.20  E-value=2.1  Score=43.54  Aligned_cols=33  Identities=12%  Similarity=0.235  Sum_probs=25.9

Q ss_pred             CCCEEEEEECCC--cEEEEECCCccccccccCccc
Q 010816          440 DSRLLLSGSKDS--TLKVWDIRTQKLKQDLPGHAD  472 (500)
Q Consensus       440 ~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~~h~~  472 (500)
                      +|++.+.|+.|+  .+..||..+.+.....+.|..
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~  546 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN  546 (557)
T ss_pred             CCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence            788999999888  788999988887665555543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.08  E-value=2.1  Score=38.47  Aligned_cols=106  Identities=24%  Similarity=0.263  Sum_probs=61.5

Q ss_pred             cEEEEEECCCCCEEEEEe---CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816          362 LVNHVYFSPDGQWVASAS---FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS  438 (500)
Q Consensus       362 ~v~~l~~sp~g~~lasgs---~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  438 (500)
                      .+.+.+++++|+.+|...   ....++++..... ....+.+.                             .+...+|+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g~-----------------------------~l~~PS~d   74 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTGG-----------------------------SLTRPSWD   74 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccCC-----------------------------cccccccc
Confidence            578899999999887665   2234555443221 11111111                             11223688


Q ss_pred             CCCCEEEEEECCCcEEEEE-CCCccccc---cccCcccCEEEEEEcCCCCEEEEEe---CCCcEEE
Q 010816          439 ADSRLLLSGSKDSTLKVWD-IRTQKLKQ---DLPGHADEVFAVDWSPDGEKVASGG---KDRVLKL  497 (500)
Q Consensus       439 ~~~~~l~s~s~d~~v~iwd-~~~~~~~~---~~~~h~~~V~~l~~s~dg~~l~s~~---~D~~v~i  497 (500)
                      +++...+....+...+++. ...++...   ....-.+.|.++.+||||.++|...   .+++|.+
T Consensus        75 ~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v  140 (253)
T PF10647_consen   75 PDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV  140 (253)
T ss_pred             CCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEE
Confidence            9988777777677777774 33332211   1122222899999999999988665   3455544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.79  E-value=4.7  Score=35.96  Aligned_cols=167  Identities=12%  Similarity=0.190  Sum_probs=89.0

Q ss_pred             ccCCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          104 IAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      +.|-.+.+..|+|+|+.. ++|.....+.|...+.. ++.+....-. -+..-.|++..++.++++--.++.+.+.++..
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            345555699999999866 45555667788777764 4555443221 34578889988887777766689998888743


Q ss_pred             CCc-cc---------ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC---CeEEEE--e------cCcc
Q 010816          182 GKP-SG---------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---RKCVIC--L------SGHT  240 (500)
Q Consensus       182 ~~~-~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~---~~~~~~--~------~~h~  240 (500)
                      ... ..         .....++..+.+++|.|..     ++|+.+-...-.+++.+..   ...+..  .      ....
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-----~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (248)
T PF06977_consen   96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-----NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV  170 (248)
T ss_dssp             --TT--EEEEEEEE---S---SS--EEEEEETTT-----TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred             cccccchhhceEEecccccCCCcceEEEEEcCCC-----CEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence            211 00         0112355678999998743     3565565555566666543   111111  1      1123


Q ss_pred             ccEEEEEeCCC-C-eEEEEeCCCeEEEEeCCCCeeEEEe
Q 010816          241 LAVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIREL  277 (500)
Q Consensus       241 ~~v~~~~~~~~-~-~l~t~~~dg~i~lwd~~~~~~~~~~  277 (500)
                      ..++++++.+. + .++.......|-.+| .+|+.+..+
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~  208 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL  208 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred             ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence            45677888764 2 566677788888888 567665544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.74  E-value=9.1  Score=39.11  Aligned_cols=104  Identities=20%  Similarity=0.300  Sum_probs=55.2

Q ss_pred             CCCeEEEEeCC------CcEEEEeCCCCceeE--EecCCCCCEEEEEEcCCCCEEEEEeCC-C-----eEEEEeCCCCCc
Q 010816          119 DGRQLASGSGD------TTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA-G-----ELQCWDPQTGKP  184 (500)
Q Consensus       119 ~~~~lat~~~d------~~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d-~-----~i~~wd~~~~~~  184 (500)
                      .+.+++.||.+      ..+..||..++.-..  .+. ....-.++++. ++...++|+.| |     ++-.||+.+.+.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            45566777766      357788887663221  111 22223334443 45777888888 3     467788876653


Q ss_pred             ccc-cccCcccceEEEEeeeeecCCCCceEEEEeCCC-----cEEEEECCCCe
Q 010816          185 SGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDG-----DARIWDVSLRK  231 (500)
Q Consensus       185 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg-----~v~iwd~~~~~  231 (500)
                      ... ++....... +++      ...+..++.||.||     ++-.||..+.+
T Consensus       362 ~~~a~M~~~R~~~-~v~------~l~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  362 TPVAPMNTKRSDF-GVA------VLDGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             eccCCccCccccc-eeE------EECCEEEEEeccccccccccEEEecCCCCc
Confidence            221 111111100 111      11345788899886     46667776554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.56  E-value=1.5  Score=38.96  Aligned_cols=56  Identities=23%  Similarity=0.361  Sum_probs=43.5

Q ss_pred             EEcCCCCEEEEEECC-----CcEEEEECCCc-cccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816          436 SWSADSRLLLSGSKD-----STLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       436 ~~s~~~~~l~s~s~d-----~~v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~  491 (500)
                      .|||||.+|+..-.|     |.|-|||.+.+ +.+..++.|.-.--.+.|.+||+.|+.+..
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            479999999987655     67999998743 345667777666678899999999987754

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.49  E-value=12  Score=39.59  Aligned_cols=56  Identities=18%  Similarity=0.350  Sum_probs=44.7

Q ss_pred             CCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816          440 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  497 (500)
Q Consensus       440 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i  497 (500)
                      +|+++|.  -...|++|+..+.+.++.-..|...+..+...-.|..++.|+--+.+.+
T Consensus       839 ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  839 NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence            6776664  4567999999988777766678888999999888999999988776654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.40  E-value=0.33  Score=29.36  Aligned_cols=31  Identities=29%  Similarity=0.323  Sum_probs=26.3

Q ss_pred             ccEEEEEEcCCC---CeEEEEeCCCcEEEEeCCC
Q 010816          109 EAVLSVAFSPDG---RQLASGSGDTTVRLWDLNT  139 (500)
Q Consensus       109 ~~V~~~~~sp~~---~~lat~~~d~~i~iwd~~~  139 (500)
                      ++|.+++|+|+.   .+||.+-.-+.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999854   5899988889999999974

It contains a characteristic DLL sequence motif.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.01  E-value=6  Score=36.44  Aligned_cols=154  Identities=16%  Similarity=0.209  Sum_probs=73.5

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCC
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD-PQTGK  183 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd-~~~~~  183 (500)
                      .+-.+.+..+..++||++++.++.-....-||--...=...-..-...|..+.|+|++.+.+.+ ..|.|++=+ .....
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence            3445778899999999999988766666778754321111122345789999999998776654 788888776 22221


Q ss_pred             ccc---ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---CccccEEEEEeCCCCeEEEE
Q 010816          184 PSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTG  257 (500)
Q Consensus       184 ~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~t~  257 (500)
                      .-.   .+.....-.+..++|.+     +...+++| ..|.+.. ....++.-..-.   .-......+.|..+..-+.-
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~-----~~~~wa~g-g~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l  292 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRP-----PNEIWAVG-GSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL  292 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESS-----SS-EEEEE-STT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred             ccccccCCcccCceeeEEEEecC-----CCCEEEEe-CCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence            111   11112223466777765     23345544 4444432 222333222111   12334667777666666667


Q ss_pred             eCCCeEEEE
Q 010816          258 SQDCTIKVW  266 (500)
Q Consensus       258 ~~dg~i~lw  266 (500)
                      +.+|.|--|
T Consensus       293 G~~G~ll~~  301 (302)
T PF14870_consen  293 GQDGVLLRY  301 (302)
T ss_dssp             -STTEEEEE
T ss_pred             CCCcEEEEe
Confidence            778876544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=92.83  E-value=7.4  Score=35.45  Aligned_cols=149  Identities=13%  Similarity=0.103  Sum_probs=78.7

Q ss_pred             CceEEEEeCCCcEEEEECC-CCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEee----------
Q 010816          210 CRRFVSASKDGDARIWDVS-LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK----------  278 (500)
Q Consensus       210 ~~~~~s~s~dg~v~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~----------  278 (500)
                      +.+++.|..+| +.+++.. ........  +...|..+...++-.++..=.|+.+.++++..-.......          
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccc
Confidence            45788888888 8999983 22222222  2233777777665333333346999999986533222100          


Q ss_pred             ----cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC---
Q 010816          279 ----GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---  351 (500)
Q Consensus       279 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~---  351 (500)
                          .....+...+                                  ..........+......++.+|.......   
T Consensus        84 ~~~~~~~~~v~~f~----------------------------------~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~  129 (275)
T PF00780_consen   84 PTKLPETKGVSFFA----------------------------------VNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS  129 (275)
T ss_pred             cccccccCCeeEEe----------------------------------eccccccceEEEEEECCEEEEEEEECCccccc
Confidence                0000011100                                  00011122344444555888776544211   


Q ss_pred             CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 010816          352 PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (500)
Q Consensus       352 ~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~  398 (500)
                      ...+--.-.+.+.+++|.  ++.|+.|..+ ...+.|+.++.....+
T Consensus       130 ~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  130 KLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELL  173 (275)
T ss_pred             ceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEe
Confidence            111222334678888888  6677777655 4788898877655443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.68  E-value=8.2  Score=35.59  Aligned_cols=108  Identities=17%  Similarity=0.254  Sum_probs=54.1

Q ss_pred             ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816          357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS  436 (500)
Q Consensus       357 ~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (500)
                      ..-...+..+..++||+++++++......-||.-.......-+.....|..                           ..
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~---------------------------~g  193 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQS---------------------------MG  193 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEE---------------------------EE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehh---------------------------ce
Confidence            344466888889999999999877666678875432222222222233333                           36


Q ss_pred             EcCCCCEEEEEECCCcEEEEEC-CCccc----cccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          437 WSADSRLLLSGSKDSTLKVWDI-RTQKL----KQDLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       437 ~s~~~~~l~s~s~d~~v~iwd~-~~~~~----~~~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      |+|++.+.+.+ ..|.|++=+. ...+.    ......-.-.+..++|.+++...++|+..
T Consensus       194 f~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  194 FSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             E-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             ecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            78888776644 7777777661 11111    11111122348999999998777766654

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.61  E-value=0.16  Score=51.83  Aligned_cols=86  Identities=17%  Similarity=0.248  Sum_probs=55.6

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE
Q 010816          369 SPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS  448 (500)
Q Consensus       369 sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s  448 (500)
                      -++.-++..+-.++.|++....+... ..+++|...+..+.|-       ..++         ...-..||||..+|.++
T Consensus       192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~-------~~g~---------~~l~~lSpDGtv~a~a~  254 (1283)
T KOG1916|consen  192 AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFF-------AEGV---------LKLASLSPDGTVFAWAI  254 (1283)
T ss_pred             ccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHH-------hhch---------hhheeeCCCCcEEEEee
Confidence            34667888888889998887665432 4466787776665431       0011         11113599999999999


Q ss_pred             CCCcEEEEECC-----CccccccccCcc
Q 010816          449 KDSTLKVWDIR-----TQKLKQDLPGHA  471 (500)
Q Consensus       449 ~d~~v~iwd~~-----~~~~~~~~~~h~  471 (500)
                      .||.++.|.+.     ..++...+..|.
T Consensus       255 ~dG~v~f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  255 SDGSVGFYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             cCCccceeeeeeeccccHhhhhccCCCC
Confidence            99999999764     223444555565

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.52  E-value=7.7  Score=34.90  Aligned_cols=141  Identities=20%  Similarity=0.201  Sum_probs=81.3

Q ss_pred             cEEEEEEcCCCCeEEEEe---CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCCcc
Q 010816          110 AVLSVAFSPDGRQLASGS---GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD-PQTGKPS  185 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~---~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd-~~~~~~~  185 (500)
                      .+.+.+++++++.+|...   ....+.++......... +.+  ..+..-+|++++...+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-LTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-ccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999999887665   33345555443322221 122  3677889999987777766667777773 3333322


Q ss_pred             cccccCc--ccceEEEEeeeeecCCCCceEEEEe---CCCcEEEEECC---CC--e----EEEEecCccccEEEEEeCCC
Q 010816          186 GNPLSGH--KKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVS---LR--K----CVICLSGHTLAVTCVKWGGD  251 (500)
Q Consensus       186 ~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~s~s---~dg~v~iwd~~---~~--~----~~~~~~~h~~~v~~~~~~~~  251 (500)
                      .......  ...|.++.++|     ++.+++.-.   .++.|.+--+.   .+  .    ...........+.++.|.++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSp-----DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSP-----DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             eEEecccccCCceEEEEECC-----CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            1111111  12788888876     455655443   34666665442   12  0    11111233457889999988


Q ss_pred             CeEEEEe
Q 010816          252 GVIYTGS  258 (500)
Q Consensus       252 ~~l~t~~  258 (500)
                      +.|+...
T Consensus       177 ~~L~V~~  183 (253)
T PF10647_consen  177 STLVVLG  183 (253)
T ss_pred             CEEEEEe
Confidence            8766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.17  E-value=0.072  Score=54.25  Aligned_cols=70  Identities=17%  Similarity=0.186  Sum_probs=50.8

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEE-----------EcCCCCEEEEEeCCCeEEEE
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA-----------WSADGKHLVSGSKAGELQCW  177 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~-----------~s~~~~~l~s~~~d~~i~~w  177 (500)
                      .-|.-+.|.++.-++..+-.+++|++-++.+... ..+.+|..++..++           .+|||+.++.++.||.+++|
T Consensus       184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY  262 (1283)
T ss_pred             ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence            4456666777778888888899999887764322 22345777766554           48899999999999998888


Q ss_pred             eC
Q 010816          178 DP  179 (500)
Q Consensus       178 d~  179 (500)
                      -+
T Consensus       263 Qi  264 (1283)
T KOG1916|consen  263 QI  264 (1283)
T ss_pred             ee
Confidence            65

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.04  E-value=6.2  Score=35.31  Aligned_cols=116  Identities=24%  Similarity=0.361  Sum_probs=67.4

Q ss_pred             EEEEcCCCCCCCc-------eeeecccCcEEEEEECCCCCEEEEEeCC-----CcEEEEeCCCC-ceEEEEeCCcccEEE
Q 010816          341 MFLWEPAVSKQPK-------TRMTGHQQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTTG-KFVAVFRGHVGPVYQ  407 (500)
Q Consensus       341 v~~wd~~~~~~~~-------~~~~~h~~~v~~l~~sp~g~~lasgs~D-----g~i~lwd~~~~-~~~~~~~~h~~~v~~  407 (500)
                      ..++|......++       ..+.+|.      .|||||.+|...-.|     |.|-|||.+.+ +.+..+.+|.-.-..
T Consensus        93 ~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHe  166 (366)
T COG3490          93 AMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHE  166 (366)
T ss_pred             EEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcce
Confidence            3456655443332       2345555      699999999876554     67899998754 224445554322222


Q ss_pred             EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC------------------CcEEEEECCCccccc--cc
Q 010816          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD------------------STLKVWDIRTQKLKQ--DL  467 (500)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d------------------~~v~iwd~~~~~~~~--~~  467 (500)
                      +                           .|.+||+.++.+...                  -..-+-|..++++++  ++
T Consensus       167 v---------------------------~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L  219 (366)
T COG3490         167 V---------------------------TLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL  219 (366)
T ss_pred             e---------------------------EEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence            2                           467899988876531                  123345555666554  23


Q ss_pred             c--CcccCEEEEEEcCCCCEEEEE
Q 010816          468 P--GHADEVFAVDWSPDGEKVASG  489 (500)
Q Consensus       468 ~--~h~~~V~~l~~s~dg~~l~s~  489 (500)
                      +  -+.-.|-.++..+||...+-+
T Consensus       220 p~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         220 PASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             chhhhhcceeeeeeCCCCcEEEEE
Confidence            3  234456777777777655543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.03  E-value=0.7  Score=28.02  Aligned_cols=30  Identities=23%  Similarity=0.387  Sum_probs=25.6

Q ss_pred             cEEEEEECCC-C--CEEEEEeCCCcEEEEeCCC
Q 010816          362 LVNHVYFSPD-G--QWVASASFDKSIKLWNGTT  391 (500)
Q Consensus       362 ~v~~l~~sp~-g--~~lasgs~Dg~i~lwd~~~  391 (500)
                      .|+++.|||+ +  .+|+.+-.-+.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            5789999985 4  5899888889999999985

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.90  E-value=3  Score=43.48  Aligned_cols=92  Identities=16%  Similarity=0.171  Sum_probs=51.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC-
Q 010816          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD-  440 (500)
Q Consensus       362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-  440 (500)
                      .|..|.++|+|.+||..|..|...+.=.+....-..+++-...+.+-.+      .....++ ..+.+-.+..+.|+|. 
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~------~v~~~~~-~~~~~~~i~qv~WhP~s  158 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTV------PVDERFF-TSNSSLEIKQVRWHPWS  158 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEE------Eechhhc-cCCCCceEEEEEEcCCC
Confidence            4888999999999999988775544322221111112222222221111      0000110 1111223444578876 


Q ss_pred             --CCEEEEEECCCcEEEEECCC
Q 010816          441 --SRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       441 --~~~l~s~s~d~~v~iwd~~~  460 (500)
                        +..|+.-..|+++|+||+..
T Consensus       159 ~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  159 ESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCCCeEEEEecCCEEEEEecCC
Confidence              57999999999999999965

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=91.76  E-value=11  Score=34.96  Aligned_cols=112  Identities=15%  Similarity=0.126  Sum_probs=62.4

Q ss_pred             cccCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCC--CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecccccee
Q 010816          358 GHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTT--GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL  434 (500)
Q Consensus       358 ~h~~~v~~l~~sp~g~~lasgs~-Dg~i~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (500)
                      .+-..-+.|+||||++.|..+.. .+.|.-|++..  +..-.      . ...+.+.      .         .....-.
T Consensus       160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~------~-~~~~~~~------~---------~~G~PDG  217 (307)
T COG3386         160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG------R-RGFVDFD------E---------EPGLPDG  217 (307)
T ss_pred             CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC------c-ceEEEcc------C---------CCCCCCc
Confidence            33445678999999977766544 57888887653  21100      0 0000000      0         0000000


Q ss_pred             eEEcCCCCEEEEEECCC-cEEEEECCCccccccccCcccCEEEEEE-cCCCCEEEEEeCC
Q 010816          435 YSWSADSRLLLSGSKDS-TLKVWDIRTQKLKQDLPGHADEVFAVDW-SPDGEKVASGGKD  492 (500)
Q Consensus       435 ~~~s~~~~~l~s~s~d~-~v~iwd~~~~~~~~~~~~h~~~V~~l~~-s~dg~~l~s~~~D  492 (500)
                      .+...+|.+-+++-.+| .|.+|+.. ++++....-....+++++| .|+.+.|...+..
T Consensus       218 ~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         218 MAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             eEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence            12245666665555554 89999988 7777665555566788888 4556666655543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=91.73  E-value=11  Score=34.94  Aligned_cols=41  Identities=20%  Similarity=0.285  Sum_probs=27.4

Q ss_pred             CcEEEEEECCCCCEEEEEeCCC-cEEEEeCCCCceEEEEeCCc
Q 010816          361 QLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHV  402 (500)
Q Consensus       361 ~~v~~l~~sp~g~~lasgs~Dg-~i~lwd~~~~~~~~~~~~h~  402 (500)
                      ...-.++...+|.+-+++-.+| .|.+|+.. |+++..++-..
T Consensus       213 G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~  254 (307)
T COG3386         213 GLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV  254 (307)
T ss_pred             CCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence            3344566777787775554554 88999887 88877666543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.24  E-value=7.2  Score=39.76  Aligned_cols=106  Identities=19%  Similarity=0.264  Sum_probs=68.8

Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-----C---
Q 010816          159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----R---  230 (500)
Q Consensus       159 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-----~---  230 (500)
                      +.-++..+.-+....+.|||...+.......-...+.|..+.|...   .++..+++.|....|.++.-..     .   
T Consensus        38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst---~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~  114 (631)
T PF12234_consen   38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTST---PDGQSILAVGFPHHVLLYTQLRYDYTNKGPS  114 (631)
T ss_pred             cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeec---CCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence            3334433333344579999998876443333345678999999864   3556788888999999985421     1   


Q ss_pred             -eEEEE--ecCcc-ccEEEEEeCCCCeEEEEeCCCeEEEEeC
Q 010816          231 -KCVIC--LSGHT-LAVTCVKWGGDGVIYTGSQDCTIKVWET  268 (500)
Q Consensus       231 -~~~~~--~~~h~-~~v~~~~~~~~~~l~t~~~dg~i~lwd~  268 (500)
                       ..+..  +..|+ .+|.+..|.++|.++.|+. +.+.|+|-
T Consensus       115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk  155 (631)
T PF12234_consen  115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK  155 (631)
T ss_pred             cceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence             11221  23444 5788999999998887664 56778774

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.15  E-value=5.7  Score=40.45  Aligned_cols=106  Identities=15%  Similarity=0.247  Sum_probs=63.7

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCceEE--EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816          366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL  443 (500)
Q Consensus       366 l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  443 (500)
                      +.-|.-++.-++-+....+.|||.+.+.+..  .| ...+.|..+.+                         ...|+|+.
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDW-------------------------tst~d~qs   88 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDW-------------------------TSTPDGQS   88 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeecee-------------------------eecCCCCE
Confidence            3344444444444444579999998876432  22 23455555544                         23689999


Q ss_pred             EEEEECCCcEEEEECCC---------ccccc--cccCcc-cCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          444 LLSGSKDSTLKVWDIRT---------QKLKQ--DLPGHA-DEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       444 l~s~s~d~~v~iwd~~~---------~~~~~--~~~~h~-~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +++.|..+.|.+|--..         ...++  .+..|. .+|.+..|.++|..++.+|  +.+.|++
T Consensus        89 iLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d  154 (631)
T PF12234_consen   89 ILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD  154 (631)
T ss_pred             EEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence            99999999999985311         01111  123344 4788999999986554443  4566654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.78  E-value=0.034  Score=52.63  Aligned_cols=144  Identities=19%  Similarity=0.303  Sum_probs=94.1

Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCcccccccC
Q 010816          113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGNPLSG  191 (500)
Q Consensus       113 ~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~  191 (500)
                      ...|-|.+..++.++.+..+..||-..+.-+ . ...++....++|..+++.++. +-..+.+.+||+.+.......+.+
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQVIL-E-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcceec-c-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence            4456777777899999999999986543221 1 123445567888888776554 556789999998765322111111


Q ss_pred             cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEE
Q 010816          192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK  264 (500)
Q Consensus       192 ~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~  264 (500)
                      ... -.=..|++..     ..++.+-..|.+.|++..+.+.+.....|...++++++..+++.+.++.|..+.
T Consensus       117 ~~s-~sll~wsKg~-----~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~  183 (615)
T KOG2247|consen  117 TSS-KSLLAWSKGT-----PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS  183 (615)
T ss_pred             cch-HHHHhhccCC-----ccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence            111 0114455433     234556678899999988877666666699999999999888877777665443

>PRK10115 protease 2; Provisional

Probab=90.50  E-value=25  Score=36.93  Aligned_cols=71  Identities=15%  Similarity=0.137  Sum_probs=47.3

Q ss_pred             cEEEEEEcCCCCeEEEEeC-----CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEe
Q 010816          110 AVLSVAFSPDGRQLASGSG-----DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA------GELQCWD  178 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~-----d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d------~~i~~wd  178 (500)
                      .+..+.++||+++||-+..     ...+++-|+.++..+...-....  ..++|.+|++.|+-...+      ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4667889999999886632     23588889988764322211111  459999999877655432      3577788


Q ss_pred             CCCC
Q 010816          179 PQTG  182 (500)
Q Consensus       179 ~~~~  182 (500)
                      +.++
T Consensus       206 lgt~  209 (686)
T PRK10115        206 IGTP  209 (686)
T ss_pred             CCCC
Confidence            8776

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.12  E-value=7.3  Score=35.09  Aligned_cols=116  Identities=8%  Similarity=0.173  Sum_probs=75.6

Q ss_pred             ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816          357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS  436 (500)
Q Consensus       357 ~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (500)
                      .|-...+.++.|+|+.+.|.+......-.||=..+|.++.+..-..     +                     .-...+.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-----~---------------------~DpE~Ie  135 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-----F---------------------SDPETIE  135 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-----c---------------------CChhHeE
Confidence            3445569999999999999888887777777667788776543110     0                     0001124


Q ss_pred             EcCCCCEEEEEECCCcEEEEECCCcccc----------ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          437 WSADSRLLLSGSKDSTLKVWDIRTQKLK----------QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       437 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~----------~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      |..+|++.++--.++.+.++.+..+...          .....-+..--.++|+|.++.|..+-+-+=++|+
T Consensus       136 yig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~  207 (316)
T COG3204         136 YIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIF  207 (316)
T ss_pred             EecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEE
Confidence            5667777777777888888776544211          1111124566789999999998888776655554

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.65  E-value=6.8  Score=38.05  Aligned_cols=60  Identities=15%  Similarity=0.287  Sum_probs=46.1

Q ss_pred             CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~  390 (500)
                      ..+++.+|..|-|++|| +.+......+.+-...|..+..+.+|.++.+.+.. .+-+-|+.
T Consensus       573 sGyIa~as~kGDirLyD-Rig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         573 SGYIAAASRKGDIRLYD-RIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             CceEEEecCCCceeeeh-hhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            45799999999999999 34445555667777889999999999988776553 56666654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=89.07  E-value=19  Score=33.51  Aligned_cols=48  Identities=19%  Similarity=0.261  Sum_probs=35.5

Q ss_pred             cEEEEECCCccccccccCcccCEEEEEEcCCCC-EEEEE-eCCCcEEEecC
Q 010816          452 TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASG-GKDRVLKLWMG  500 (500)
Q Consensus       452 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~s~-~~D~~v~iW~~  500 (500)
                      .|-++|+.+++.+..++. ...+.++..+.|.+ +|++. ..++.+.+|+.
T Consensus       270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~  319 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA  319 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred             EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence            377789999998887763 23577888888766 66554 45789999874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK13684 Ycf48-like protein; Provisional

Probab=89.05  E-value=20  Score=33.77  Aligned_cols=150  Identities=13%  Similarity=0.151  Sum_probs=79.7

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEE-EEeCCCCceeEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVR-LWDLNTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~-iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~  185 (500)
                      ...+.++.+.|++.+++++. .|.+. -+|- .++..... ..-...+.++.+.+++..++.+ ..|.+++=....|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            45788999999987776654 34333 2221 12211111 2334678899999998876654 4676653223333321


Q ss_pred             cccc---cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---CccccEEEEEeCCCCeEEEEeC
Q 010816          186 GNPL---SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTGSQ  259 (500)
Q Consensus       186 ~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~t~~~  259 (500)
                      ....   ......+.++.+.+     + ..+..++.+|.+.. ....++.-....   +-......+.|..++..+..+.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~-----~-~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRT-----P-GEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             ccccCCccccccceeeEEEcC-----C-CCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence            1100   01122345565544     2 24555666775543 333333322221   1123466677776667777888


Q ss_pred             CCeEEEEe
Q 010816          260 DCTIKVWE  267 (500)
Q Consensus       260 dg~i~lwd  267 (500)
                      .|.|--|+
T Consensus       322 ~G~il~~~  329 (334)
T PRK13684        322 RGVLLRYV  329 (334)
T ss_pred             CceEEEec
Confidence            88887665

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.74  E-value=6.9  Score=40.33  Aligned_cols=117  Identities=13%  Similarity=0.152  Sum_probs=76.5

Q ss_pred             cEEEEEEcC--CCCeEEEEeCCCcEEEEeCCC-------C-------------ceeEEecCCCCCEEEEEEc--CCCCEE
Q 010816          110 AVLSVAFSP--DGRQLASGSGDTTVRLWDLNT-------Q-------------TPMFKCTGHKNWVLCIAWS--ADGKHL  165 (500)
Q Consensus       110 ~V~~~~~sp--~~~~lat~~~d~~i~iwd~~~-------~-------------~~~~~~~~h~~~v~~v~~s--~~~~~l  165 (500)
                      .|.-+....  ....|+.+..||.|.+|.+++       .             +|.+.+. -...+..++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            355554433  445788999999999997521       0             1222332 23468889988  777888


Q ss_pred             EEEeCCCeEEEEeCCC--CCcccccccCcccceEEEEeeeeecCCCCc-eEEEEeCCCcEEEEEC
Q 010816          166 VSGSKAGELQCWDPQT--GKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDV  227 (500)
Q Consensus       166 ~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~s~s~dg~v~iwd~  227 (500)
                      |.++....|.||-...  .+.....-..|...|.+++|.+......+. .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888888888875433  221111122356778999998866444333 6778899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=88.70  E-value=8.3  Score=38.27  Aligned_cols=119  Identities=13%  Similarity=0.295  Sum_probs=69.3

Q ss_pred             cccCcEEEEEECCC----CCEEEEEeCCCcEEEEeCCC-----CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeec
Q 010816          358 GHQQLVNHVYFSPD----GQWVASASFDKSIKLWNGTT-----GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM  428 (500)
Q Consensus       358 ~h~~~v~~l~~sp~----g~~lasgs~Dg~i~lwd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  428 (500)
                      |.-.-|..++|.|-    ...|.+......|.+|.+..     .+.+..-..+-+.                 .+.+.. 
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e-----------------~~pvLp-  115 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE-----------------PFPVLP-  115 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC-----------------CcccCC-
Confidence            44456889999984    33455556788999998642     2222111000000                 000111 


Q ss_pred             cccceeeEEcCCCCEEEEEECCCcEEEEECCC--ccccccccCcccCEEEEEEcCCCCEEEEE-eCCCcEEEec
Q 010816          429 SCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT--QKLKQDLPGHADEVFAVDWSPDGEKVASG-GKDRVLKLWM  499 (500)
Q Consensus       429 ~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~--~~~~~~~~~h~~~V~~l~~s~dg~~l~s~-~~D~~v~iW~  499 (500)
                          ....|+|....|+.-.....-.+++++.  .+....+.+ .+.|.+.+|..||++|+.+ |..-.-+||+
T Consensus       116 ----QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~-~G~IhCACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  116 ----QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT-SGLIHCACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             ----CcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC-CceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence                1125899998888765554444565543  233334433 4679999999999999876 4444567786

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=88.55  E-value=18  Score=32.38  Aligned_cols=207  Identities=14%  Similarity=0.195  Sum_probs=92.6

Q ss_pred             ecCccccEEEEEeCCC-CeEEE-EeCCCeEEEEeCCCCeeEEEeecCC-ceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816          236 LSGHTLAVTCVKWGGD-GVIYT-GSQDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (500)
Q Consensus       236 ~~~h~~~v~~~~~~~~-~~l~t-~~~dg~i~lwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (500)
                      +.+-...++.++|.++ +.|++ ....+.|.-.+. +|+.++.+.-.+ .....++...                     
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g---------------------   74 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG---------------------   74 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S---------------------
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC---------------------
Confidence            4455566899999985 55554 566777877776 577777664332 2223333221                     


Q ss_pred             HHHHHHHhhhhhcCCCCcEEEEee-CCCeEEEEcCCCCCCC--ce---ee-----ecccCcEEEEEECCCCCEEEEEeCC
Q 010816          313 MKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQP--KT---RM-----TGHQQLVNHVYFSPDGQWVASASFD  381 (500)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~~~~--~~---~~-----~~h~~~v~~l~~sp~g~~lasgs~D  381 (500)
                                      ...++..+ .++.+.+++.......  ..   .+     ..+...+..++|+|.++.|..+-..
T Consensus        75 ----------------~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~  138 (248)
T PF06977_consen   75 ----------------NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER  138 (248)
T ss_dssp             ----------------TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES
T ss_pred             ----------------CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC
Confidence                            22344444 4777777776322111  11   11     1233458899999987777777666


Q ss_pred             CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCC
Q 010816          382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       382 g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~  460 (500)
                      .-.++|.+....       ....+........     ......+    ...+.+++.|.. ++++-......+..+| ..
T Consensus       139 ~P~~l~~~~~~~-------~~~~~~~~~~~~~-----~~~~~~~----~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~  201 (248)
T PF06977_consen  139 KPKRLYEVNGFP-------GGFDLFVSDDQDL-----DDDKLFV----RDLSGLSYDPRTGHLLILSDESRLLLELD-RQ  201 (248)
T ss_dssp             SSEEEEEEESTT--------SS--EEEE-HHH-----H-HT--S----S---EEEEETTTTEEEEEETTTTEEEEE--TT
T ss_pred             CChhhEEEcccc-------Cccceeecccccc-----cccccee----ccccceEEcCCCCeEEEEECCCCeEEEEC-CC
Confidence            555666543210       0000000000000     0000000    112344556654 4555555666777777 34


Q ss_pred             cccccc--ccC--c-----ccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          461 QKLKQD--LPG--H-----ADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       461 ~~~~~~--~~~--h-----~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      ++.+..  +..  |     -..--.++|.++| .|...++-+..+++
T Consensus       202 G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  202 GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLYIVSEPNLFYRF  247 (248)
T ss_dssp             --EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred             CCEEEEEEeCCcccCcccccCCccEEEECCCC-CEEEEcCCceEEEe
Confidence            443322  221  1     1234689999998 56666677766654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.19  E-value=22  Score=34.05  Aligned_cols=57  Identities=16%  Similarity=0.257  Sum_probs=33.2

Q ss_pred             eEEcCCCCEEEEEECC-------------------CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          435 YSWSADSRLLLSGSKD-------------------STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       435 ~~~s~~~~~l~s~s~d-------------------~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      +.|.|||.+.++-+..                   +.|..++..+++......++ .-.+.++|+|+|+.+++-..+
T Consensus       129 l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       129 LAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence            3567888766654421                   34555555544432222333 335689999999887764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.81  E-value=2.1  Score=25.25  Aligned_cols=28  Identities=18%  Similarity=0.470  Sum_probs=19.4

Q ss_pred             cCEEEEEEcCCCCEEEEEe-CC--CcEEEec
Q 010816          472 DEVFAVDWSPDGEKVASGG-KD--RVLKLWM  499 (500)
Q Consensus       472 ~~V~~l~~s~dg~~l~s~~-~D--~~v~iW~  499 (500)
                      ..-....|||||++|+-++ .+  |.-.||.
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~   39 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV   39 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence            4557889999999987554 44  6777763

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.76  E-value=5.1  Score=41.89  Aligned_cols=73  Identities=19%  Similarity=0.223  Sum_probs=52.2

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeC---------CCCceeEEe-----------cCCCCCEEEEEEcCC---CCEEE
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDL---------NTQTPMFKC-----------TGHKNWVLCIAWSAD---GKHLV  166 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~---------~~~~~~~~~-----------~~h~~~v~~v~~s~~---~~~l~  166 (500)
                      .|..|.++|+|++||-.|..|.+.+.=.         +.+.....+           ..+...|..+.|+|.   +.+|+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            5888999999999999888765444311         112221111           234567999999986   57899


Q ss_pred             EEeCCCeEEEEeCCCC
Q 010816          167 SGSKAGELQCWDPQTG  182 (500)
Q Consensus       167 s~~~d~~i~~wd~~~~  182 (500)
                      .-..|+++|+||+...
T Consensus       166 vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEecCCEEEEEecCCC
Confidence            9999999999998654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=87.69  E-value=10  Score=32.90  Aligned_cols=100  Identities=12%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             EEEEECCCCCEE-EEEeCCCcEEEEe--CCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816          364 NHVYFSPDGQWV-ASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (500)
Q Consensus       364 ~~l~~sp~g~~l-asgs~Dg~i~lwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  440 (500)
                      +.++|+.+.+.+ .+-+.+-.|.-||  ..+|....     ...+..++-........|.+.             +...+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-----r~~i~dlrk~~~~e~~~PDGm-------------~ID~e  222 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-----RKVIFDLRKSQPFESLEPDGM-------------TIDTE  222 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccC-----cceeEEeccCCCcCCCCCCcc-------------eEccC
Confidence            567788776544 4556677887787  56665421     112222221100000111111             12446


Q ss_pred             CCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcC
Q 010816          441 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP  481 (500)
Q Consensus       441 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~  481 (500)
                      |.+.++.-+.++|...|..+++.+..+.--...|++++|-.
T Consensus       223 G~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  223 GNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            78888888889999999999999877666678999999964

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.65  E-value=4.2  Score=35.56  Aligned_cols=64  Identities=14%  Similarity=0.303  Sum_probs=48.4

Q ss_pred             EcCCCCeEEEEeCCCcEEEEeCCCCceeEEe-------c-------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          116 FSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-------T-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       116 ~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~-------~-------~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      +..++++|..-..+|.+++||+.+++.+..-       .       .....|..+..+.+|.-|++-+ +|....|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            4567889999999999999999887654321       1       3456788889998888777665 5778888765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.39  E-value=5.5  Score=38.62  Aligned_cols=119  Identities=18%  Similarity=0.266  Sum_probs=73.5

Q ss_pred             CCCEEE-EEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec----------------------CCCCceeeee
Q 010816          371 DGQWVA-SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR----------------------YPSNFYCVVD  427 (500)
Q Consensus       371 ~g~~la-sgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~----------------------~~~~~~~~~~  427 (500)
                      |..+|. .|+....++--|++.|+.+..+..|...+-  .+.+-..+.                      ...+...+..
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvV--qy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVV--QYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCccee--ecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            444443 555666777778888998888877765432  222111110                      0001111111


Q ss_pred             ccccceeeEEc----CCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816          428 MSCCMSLYSWS----ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       428 ~~~~~~~~~~s----~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~  491 (500)
                      .....+...||    ....++|.||.-|-||+||.-..+....+++-...|..+..+.+|+++.+...
T Consensus       556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence            11112222232    34569999999999999997776666678888889999999999999876655

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.58  E-value=25  Score=31.90  Aligned_cols=159  Identities=18%  Similarity=0.267  Sum_probs=92.6

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      +.|-...|.++.|+|+.+.|++......-.||=-..|..+.+.  .+. .....+.|..++.++++-=.++.+.+..+..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            3455566999999999999998887777777755556555433  222 2234567777777777766777777776544


Q ss_pred             CCccc------ccc---cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE---EEEecCcc-------cc
Q 010816          182 GKPSG------NPL---SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHT-------LA  242 (500)
Q Consensus       182 ~~~~~------~~~---~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~---~~~~~~h~-------~~  242 (500)
                      .....      .++   ...+....+++|.|..     ++|..+-.-.-++|+.+.....   +.....++       ..
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-----~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D  234 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-----HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD  234 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCC-----ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence            32110      011   1126677899998743     4666666666666665542210   00111111       23


Q ss_pred             EEEEEeCC--CCeEEEEeCCCeEEEEeC
Q 010816          243 VTCVKWGG--DGVIYTGSQDCTIKVWET  268 (500)
Q Consensus       243 v~~~~~~~--~~~l~t~~~dg~i~lwd~  268 (500)
                      |+.+.|++  +..++-+..++.+.-.|.
T Consensus       235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~  262 (316)
T COG3204         235 VSGLEFNAITNSLLVLSDESRRLLEVDL  262 (316)
T ss_pred             cccceecCCCCcEEEEecCCceEEEEec
Confidence            55566663  334555666666666664

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.18  E-value=6.2  Score=34.55  Aligned_cols=61  Identities=13%  Similarity=0.230  Sum_probs=46.4

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCcccccc-------cc-------CcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          438 SADSRLLLSGSKDSTLKVWDIRTQKLKQD-------LP-------GHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       438 s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-------~~-------~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ..++.+|++-..+|.+++||+.+++....       +.       .....|..+..+.+|.-|++-+. |..+.|+
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~   93 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYS   93 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEec
Confidence            45788999999999999999998765322       21       34467889999999988877654 6677775

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=86.01  E-value=51  Score=35.04  Aligned_cols=113  Identities=17%  Similarity=0.161  Sum_probs=66.8

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC--------EEEEEEc----------------CCCCEEEEEeCCCeEE
Q 010816          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW--------VLCIAWS----------------ADGKHLVSGSKAGELQ  175 (500)
Q Consensus       120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~v~~s----------------~~~~~l~s~~~d~~i~  175 (500)
                      +..|..++.++.|.-.|..+++.+.+..-....        ...+++.                .++..|+.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            556777777888888888888777655322110        1112221                1345888899999999


Q ss_pred             EEeCCCCCcccccccCcccce-------------EEEEeeeeecCCCCceEEEEeC----------CCcEEEEECCCCeE
Q 010816          176 CWDPQTGKPSGNPLSGHKKWI-------------TGISWEPVHLNAPCRRFVSASK----------DGDARIWDVSLRKC  232 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~~~~~~~~~~s~s~----------dg~v~iwd~~~~~~  232 (500)
                      -.|.++|+.....  +.+..+             ..+.-.|.-   ....++.|+.          +|.|+-+|.++++.
T Consensus       274 ALDA~TGk~~W~f--g~~G~vdl~~~~g~~~~g~~~~ts~P~V---~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl  348 (764)
T TIGR03074       274 ALDADTGKLCEDF--GNNGTVDLTAGMGTTPPGYYYPTSPPLV---AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL  348 (764)
T ss_pred             EEECCCCCEEEEe--cCCCceeeecccCcCCCcccccccCCEE---ECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence            9999999765321  111111             001111111   1235666643          68899999999998


Q ss_pred             EEEec
Q 010816          233 VICLS  237 (500)
Q Consensus       233 ~~~~~  237 (500)
                      +-.+.
T Consensus       349 ~W~~~  353 (764)
T TIGR03074       349 VWAWD  353 (764)
T ss_pred             eeEEe
Confidence            87654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=85.81  E-value=15  Score=28.86  Aligned_cols=118  Identities=9%  Similarity=0.133  Sum_probs=67.3

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCCcccc------cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC
Q 010816          157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGN------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR  230 (500)
Q Consensus       157 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~  230 (500)
                      .|.....-|++++.-|+|.|.++........      .+-.-+..|++++-.+.........++.|+ ..++..||+...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence            4544455788888889999998764422111      111223556676655554434444555555 467899999876


Q ss_pred             eEEEEecCccccEEEEEeC---C-CCeEEEEeCCCeEEEEeCCCCeeEEE
Q 010816          231 KCVICLSGHTLAVTCVKWG---G-DGVIYTGSQDCTIKVWETTQGKLIRE  276 (500)
Q Consensus       231 ~~~~~~~~h~~~v~~~~~~---~-~~~l~t~~~dg~i~lwd~~~~~~~~~  276 (500)
                      .-++.. .-...|.++.+.   . +..++..+.+..|.-||....+...+
T Consensus        84 ~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   84 SDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             chhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence            554322 223456666552   1 23455555567788888655444443

>PHA03098 kelch-like protein; Provisional

Probab=85.18  E-value=42  Score=34.12  Aligned_cols=51  Identities=14%  Similarity=0.176  Sum_probs=26.3

Q ss_pred             CCCEEEEEECC--------CcEEEEECCCcccccc--ccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          440 DSRLLLSGSKD--------STLKVWDIRTQKLKQD--LPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       440 ~~~~l~s~s~d--------~~v~iwd~~~~~~~~~--~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      ++.+++.|+.+        ..+.+||..+.+....  ++........+.+  +++.++.||.+
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~  497 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK  497 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence            56666666643        2388899887654321  2111111122223  56666777654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=84.58  E-value=17  Score=35.20  Aligned_cols=88  Identities=16%  Similarity=0.162  Sum_probs=54.8

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCC---------------C
Q 010816          146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAP---------------C  210 (500)
Q Consensus       146 ~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------~  210 (500)
                      +......+.++..+|++.+.|+...=|.|.++|+.++..+. ..+|..+.  .+.|........               .
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvr-mWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVR-MWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhh-hhccCccc--eEEEEEeecccccccccccccCCCCcce
Confidence            44556678999999999888887777999999998876443 34443332  122221111000               0


Q ss_pred             -ceEEEEeCCCcEEEEECCCCeEEEEe
Q 010816          211 -RRFVSASKDGDARIWDVSLRKCVICL  236 (500)
Q Consensus       211 -~~~~s~s~dg~v~iwd~~~~~~~~~~  236 (500)
                       -.++-+-.-|.|.||+++++..+..+
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCCEEEEE
Confidence             12344566788999998887665543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.11  E-value=36  Score=32.83  Aligned_cols=118  Identities=13%  Similarity=0.177  Sum_probs=66.9

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc---cCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL---SGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (500)
Q Consensus       147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~  223 (500)
                      ....++|.++.||+|.+.||.--.|++|.+.+....+......   ..-+..|.+..|...      ..++.-+. .-+-
T Consensus        63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s------~e~A~i~~-~G~e  135 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS------TEIAFITD-QGIE  135 (657)
T ss_pred             ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC------eeEEEEec-CCeE
Confidence            3456799999999999999999999999999874322211111   122345777888642      23333333 2244


Q ss_pred             EEECCC-CeEEEEecCccccEEEEEeCCCCe--EE-EEeCCCeEEEEeCCCC
Q 010816          224 IWDVSL-RKCVICLSGHTLAVTCVKWGGDGV--IY-TGSQDCTIKVWETTQG  271 (500)
Q Consensus       224 iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~--l~-t~~~dg~i~lwd~~~~  271 (500)
                      +|.+.. ...+...+.|+..|.-..|.++..  ++ ++-..+++.=+.++++
T Consensus       136 ~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  136 FYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            554321 122233345666676666776642  22 2324455554555444

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=83.81  E-value=5.7  Score=40.55  Aligned_cols=40  Identities=20%  Similarity=0.376  Sum_probs=30.6

Q ss_pred             cEEEEEECC----CCCEEEEEeCCCcEEEEeCCCCceEEEEeCC
Q 010816          362 LVNHVYFSP----DGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (500)
Q Consensus       362 ~v~~l~~sp----~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h  401 (500)
                      .+..+++++    +..+|++-+.|+++|+||+.+++++.+..-.
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence            456667766    6789999999999999999999997765433

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=81.68  E-value=52  Score=31.75  Aligned_cols=206  Identities=16%  Similarity=0.179  Sum_probs=117.4

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe---CCCeEEEEeCCCCeeEEEeecCCceEEEE
Q 010816          212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS---QDCTIKVWETTQGKLIRELKGHGHWVNSL  287 (500)
Q Consensus       212 ~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~---~dg~i~lwd~~~~~~~~~~~~~~~~v~~~  287 (500)
                      .++....+..|.+.|..+.+......--. .-..+++++++ .++.+.   .++++.+.|..+++..........+ ..+
T Consensus        88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~  165 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGV  165 (381)
T ss_pred             EEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceE
Confidence            56666667899999977666554432111 23456677765 444433   3788999998888877765433333 445


Q ss_pred             EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee---eecccCcEE
Q 010816          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR---MTGHQQLVN  364 (500)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~---~~~h~~~v~  364 (500)
                      ++.++.                                   ....++-..++++.+.|..........   ...-.....
T Consensus       166 a~~p~g-----------------------------------~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~  210 (381)
T COG3391         166 AVDPDG-----------------------------------NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPA  210 (381)
T ss_pred             EECCCC-----------------------------------CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCc
Confidence            554432                                   112344456788888885432211000   011122345


Q ss_pred             EEEECCCCCEEEEEeCC---CcEEEEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816          365 HVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (500)
Q Consensus       365 ~l~~sp~g~~lasgs~D---g~i~lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  440 (500)
                      .+.++|+|..+...-..   +.+...|..++..... +..-..                           .......+|+
T Consensus       211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~---------------------------~~~~v~~~p~  263 (381)
T COG3391         211 GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG---------------------------APRGVAVDPA  263 (381)
T ss_pred             eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC---------------------------CCCceeECCC
Confidence            68899999866554333   5888888887765442 111000                           0111245899


Q ss_pred             CCEEEEEEC-CCcEEEEECCCccccccccCccc---CEEEEEEcC
Q 010816          441 SRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHAD---EVFAVDWSP  481 (500)
Q Consensus       441 ~~~l~s~s~-d~~v~iwd~~~~~~~~~~~~h~~---~V~~l~~s~  481 (500)
                      |..+.+... .+.|.+.|..+............   .+..+++.+
T Consensus       264 g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~  308 (381)
T COG3391         264 GKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP  308 (381)
T ss_pred             CCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence            999888854 48899999888766554433322   244444444

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=80.40  E-value=39  Score=32.70  Aligned_cols=149  Identities=18%  Similarity=0.224  Sum_probs=59.4

Q ss_pred             eCCCeEEEEcCCCCCCCceeeecccC-cEEEEEECCC--CCE-EEEEeCCCcEEEEeC-CCCceEEEEeCCcccEEEEEe
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMTGHQQ-LVNHVYFSPD--GQW-VASASFDKSIKLWNG-TTGKFVAVFRGHVGPVYQIRF  410 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~~h~~-~v~~l~~sp~--g~~-lasgs~Dg~i~lwd~-~~~~~~~~~~~h~~~v~~~~~  410 (500)
                      ..-.++.+||....+..+..-.+.+. ....|.|..+  ..+ ++.+....+|..|-- ..++...      ..|-.+.-
T Consensus       219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a------~kVi~ip~  292 (461)
T PF05694_consen  219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA------EKVIDIPA  292 (461)
T ss_dssp             -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE------EEEEEE--
T ss_pred             cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee------eEEEECCC
Confidence            34468999998765443333333222 3567777643  333 344444555655533 3343211      11111111


Q ss_pred             eeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEEEECCCc---cccccc--------------cC--c
Q 010816          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRTQ---KLKQDL--------------PG--H  470 (500)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~~---~~~~~~--------------~~--h  470 (500)
                      ..+..-..|............++.+..|.|.++|..... +|.||.||+...   ++...+              .+  -
T Consensus       293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l  372 (461)
T PF05694_consen  293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL  372 (461)
T ss_dssp             EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred             cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence            110000001100001111233455567899999998874 899999999752   221110              00  0


Q ss_pred             ccCEEEEEEcCCCCEEEEEe
Q 010816          471 ADEVFAVDWSPDGEKVASGG  490 (500)
Q Consensus       471 ~~~V~~l~~s~dg~~l~s~~  490 (500)
                      .+...-+..|-||++|....
T Consensus       373 ~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  373 RGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -S----EEE-TTSSEEEEE-
T ss_pred             CCCCCeEEEccCCeEEEEEe
Confidence            12335677888999987654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=80.07  E-value=30  Score=32.57  Aligned_cols=29  Identities=21%  Similarity=0.349  Sum_probs=23.3

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816          363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (500)
Q Consensus       363 v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~  393 (500)
                      .+.|+|.|||+++++ ...|.|++++ ..+.
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~   32 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGS   32 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCc
Confidence            578999999988776 5699999999 4444

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	500
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-44
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-27
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-27
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-18
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-27
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-27
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-18
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-27
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-18
2h9l_A	329	Wdr5delta23 Length = 329		4e-27
2h9l_A	329	Wdr5delta23 Length = 329		4e-27
2h9l_A	329	Wdr5delta23 Length = 329		1e-18
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-27
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-18
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-27
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-27
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-18
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-27
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-27
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-18
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-27
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-27
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-18
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-27
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-27
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-18
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-27
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-27
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-18
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-27
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-27
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-18
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-27
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-27
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-18
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-27
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-25
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		9e-27
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-26
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-15
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-26
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-25
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-26
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-26
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-16
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-26
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-26
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-16
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-24
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-22
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-20
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-22
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-12
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-22
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-12
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-21
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-18
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		6e-21
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-20
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-16
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-18
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-16
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		9e-13
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		7e-16
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-15
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		7e-12
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-15
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		6e-12
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-15
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		9e-12
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-15
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		8e-12
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-15
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		5e-15
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-15
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		7e-12
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-15
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-14
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-14
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-14
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-12
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-14
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-13
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		6e-14
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-14
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-09
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-14
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-14
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		7e-14
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		7e-13
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		7e-14
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		7e-14
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-09
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		8e-14
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-14
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-13
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		6e-10
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		8e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-13
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		6e-10
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		8e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-13
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-09
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-12
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-11
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-09
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-11
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		6e-09
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-11
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-08
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		9e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-11
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-09
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		4e-11
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		4e-11
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-11
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-10
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-10
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-10
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-10
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-10
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-10
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		3e-09
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-09
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		9e-09
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-08
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		8e-06
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-07
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-07
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		4e-07
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		4e-07
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		4e-07
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		4e-07
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		4e-07
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		1e-06
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		2e-06
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		2e-06
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		6e-06
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		8e-06
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		1e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-05
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		5e-05
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		6e-05
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		8e-05
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		4e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		9e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  176 bits (445), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/425 (31%), Positives = 216/425 (50%), Gaps = 38/425 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++  NR  A    H+ +V  VAFSPDG+ +AS S D TV+LW+ N Q  +   TGH + V
Sbjct: 6   VKERNRLEA----HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSV 60
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +A+S DG+ + S S    ++ W+ + G+     L+GH   + G+++ P       +  
Sbjct: 61  WGVAFSPDGQTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVRGVAFSP-----DGQTI 113
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
            SAS D   ++W+ +  + +  L+GH+ +V  V +  DG  I + S D T+K+W    G+
Sbjct: 114 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 171
Query: 273 LIRELKGHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA--- 328
           L++ L GH   V  +A S +   + + + D T K ++   ++ +      + ++G A   
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 231
Query: 329 -PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
             + + S SDD T+ LW    + Q    +TGH   VN V F PDGQ +ASAS DK++KLW
Sbjct: 232 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Query: 388 NGTTGKFVAVFRGHVGPVYQIRFE--------------LIYCFRYPSNFYCVVDMSCCMS 433
           N   G+ +    GH   V+ + F               +    R   +   +   S  + 
Sbjct: 290 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW 348
Query: 434 LYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR 493
             ++S D + + S S D T+K+W+ R  +L Q L GH+  V  V +SPDG+ +AS   D+
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407
Query: 494 VLKLW 498
            +KLW
Sbjct: 408 TVKLW 412

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 15  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 305 LENDKTIKLW 314

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 80  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 256
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 22  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 77
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
                                  +WS+DS LL+S S D TLK+WD+ + K  + L GH++
Sbjct: 78  -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
            VF  +++P    + SG  D  +++W
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 145/316 (45%), Gaps = 26/316 (8%)
Query: 88  PQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT 147
           P     ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +
Sbjct: 2   PLGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 61
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
           GHK  +  +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P    
Sbjct: 62  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP---- 116
Query: 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
                 VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W
Sbjct: 117 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 267 ETTQGKLIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313
           +T  G+ ++ L               +G ++ +  L     L   +     K Y+  +  
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373
           K      ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P   
Sbjct: 236 KYCIFANFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTEN 291
Query: 374 WVASASF--DKSIKLW 387
            +ASA+   DK+IKLW
Sbjct: 292 IIASAALENDKTIKLW 307

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 16  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 72
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 73  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 162
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 163 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 213
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 249
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 250 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 15  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 70
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
                                  +WS+DS LL+S S D TLK+WD+ + K  + L GH++
Sbjct: 71  -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 107
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
            VF  +++P    + SG  D  +++W
Sbjct: 108 YVFCCNFNPQSNLIVSGSFDESVRIW 133

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 39  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 95
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 96  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 185
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 186 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 236
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 272
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 273 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 38  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 93
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
                                  +WS+DS LL+S S D TLK+WD+ + K  + L GH++
Sbjct: 94  -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 130
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
            VF  +++P    + SG  D  +++W
Sbjct: 131 YVFCCNFNPQSNLIVSGSFDESVRIW 156

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 26  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 85
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 86  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 139
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 259
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 260 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 316 LENDKTIKLW 325

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 34  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 90
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 91  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 180
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 181 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 231
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 267
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 268 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 33  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 88
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
                                  +WS+DS LL+S S D TLK+WD+ + K  + L GH++
Sbjct: 89  -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 125
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
            VF  +++P    + SG  D  +++W
Sbjct: 126 YVFCCNFNPQSNLIVSGSFDESVRIW 151

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 41  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 97
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 98  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 187
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 188 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 238
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 274
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 275 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 40  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 95
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
                                  +WS+DS LL+S S D TLK+WD+ + K  + L GH++
Sbjct: 96  -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 132
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
            VF  +++P    + SG  D  +++W
Sbjct: 133 YVFCCNFNPQSNLIVSGSFDESVRIW 158

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 5   VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 64
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 65  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 118
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 238
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 239 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 295 LENDKTIKLW 304

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 13  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 69
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 70  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 159
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 160 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 210
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 246
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 247 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 12  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 67
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
                                  +WS+DS LL+S S D TLK+WD+ + K  + L GH++
Sbjct: 68  -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 104
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
            VF  +++P    + SG  D  +++W
Sbjct: 105 YVFCCNFNPQSNLIVSGSFDESVRIW 130

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 9   VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 69  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 122
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 243 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 299 LENDKTIKLW 308

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 73
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 74  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 163
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 164 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 250
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 16  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 71
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
                                  +WS+DS LL+S S D TLK+WD+ + K  + L GH++
Sbjct: 72  -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 108
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
            VF  +++P    + SG  D  +++W
Sbjct: 109 YVFCCNFNPQSNLIVSGSFDESVRIW 134

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 9   VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 69  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 122
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 243 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 299 LENDKTIKLW 308

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 73
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 74  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 163
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 164 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 250
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 16  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 71
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
                                  +WS+DS LL+S S D TLK+WD+ + K  + L GH++
Sbjct: 72  -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 108
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
            VF  +++P    + SG  D  +++W
Sbjct: 109 YVFCCNFNPQSNLIVSGSFDESVRIW 134

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 10  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 69
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 70  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 123
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 243
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 244 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 300 LENDKTIKLW 309

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 18  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 74
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 75  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 164
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 165 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 215
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 251
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 252 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 17  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 72
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
                                  +WS+DS LL+S S D TLK+WD+ + K  + L GH++
Sbjct: 73  -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 109
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
            VF  +++P    + SG  D  +++W
Sbjct: 110 YVFCCNFNPQSNLIVSGSFDESVRIW 135

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 15  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 305 LENDKTIKLW 314

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  119 bits (297), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 80  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 256
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 22  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 77
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
                                  +WS+DS LL+S S D TLK+WD+ + K  + L GH++
Sbjct: 78  -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
            VF  +++P    + SG  D  +++W
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 15  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 305 LENDKTIKLW 314

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 80  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 256
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 22  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 77
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
                                  +WS+DS LL+S S D TLK+WD+ + K  + L GH++
Sbjct: 78  -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
            VF  +++P    + SG  D  +++W
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 14  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 73
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 74  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 127
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 247
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 248 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 303
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 304 LENDKTIKLW 313

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 22  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 78
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 79  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 168
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 169 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 219
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 255
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 256 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  +    
Sbjct: 21  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 76
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
                                  +WS+DS LL+S S D TLK+WD+ + K  + L GH++
Sbjct: 77  -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 113
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
            VF  +++P    + SG  D  +++W
Sbjct: 114 YVFCCNFNPQSNLIVSGSFDESVRIW 139

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  118 bits (295), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 12  VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV    C+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L  +  L   +     K Y+  +  K     
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNMVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 302 LENDKTIKLW 311

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  111 bits (278), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 150/319 (47%), Gaps = 38/319 (11%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
           L+GH K ++ + + P           S+S D   +IW     K    +SGH L ++ V W
Sbjct: 22  LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 249 GGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQ 306
             D  ++ + S D T+K+W+ + GK ++ LKGH ++V     + +  L  +G+FD + + 
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 307 YSSPEEMKKAALERYNK----IKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
           +     M    L  ++     +  N    L VS S D    +W+ A  +  KT +     
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN 421
            V+ V FSP+G+++ +A+ D  +KLW+ + GK +  + GH    Y               
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY--------------- 241
Query: 422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP 481
                   C  + +S +   + ++SGS+D+ + +W+++T+++ Q L GH D V +    P
Sbjct: 242 --------CIFANFSVTG-GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 482 DGEKVASGG--KDRVLKLW 498
               +AS     D+ +KLW
Sbjct: 293 TENIIASAALENDKTIKLW 311

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  118 bits (295), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LA+ S D  +++W           +GHK  +
Sbjct: 12  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 302 LENDKTIKLW 311

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L + S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 77  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 253
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KLW
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 33/170 (19%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF-- 410
           K  + GH + V+ V FSP+G+W+A++S DK IK+W    GKF     GH   +  + +  
Sbjct: 19  KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 411 ----------------------ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448
                                 + +   +  SN+     + CC    +++  S L++SGS
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-----VFCC----NFNPQSNLIVSGS 129
Query: 449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
            D ++++WD++T K  + LP H+D V AV ++ DG  + S   D + ++W
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 12  VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV    C+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNMVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
              DK+IKLW
Sbjct: 302 LENDKTIKLW 311

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 151/319 (47%), Gaps = 38/319 (11%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
           L+GH K ++ + + P           S+S D   +IW     K    +SGH L ++ V W
Sbjct: 22  LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 249 GGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQ 306
             D  ++ + S D T+K+W+ + GK ++ LKGH ++V     + +  L  +G+FD + + 
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 307 YSSPEEMKKAALERYNK----IKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
           +     M    L  ++     +  N    L VS S D    +W+ A  +  KT +     
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN 421
            V+ V FSP+G+++ +A+ D ++KLW+ + GK +  + GH    Y               
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--------------- 241
Query: 422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP 481
                   C  + +S +   + ++SGS+D+ + +W+++T+++ Q L GH D V +    P
Sbjct: 242 --------CIFANFSVTG-GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 482 DGEKVASGG--KDRVLKLW 498
               +AS     D+ +KLW
Sbjct: 293 TENIIASAALENDKTIKLW 311

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 12  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
              DK+IKL+
Sbjct: 302 LENDKTIKLY 311

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 77  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 253
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KL+
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 33/170 (19%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF-- 410
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  + +  
Sbjct: 19  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 411 ----------------------ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448
                                 + +   +  SN+     + CC    +++  S L++SGS
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-----VFCC----NFNPQSNLIVSGS 129
Query: 449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
            D ++++WD++T K  + LP H+D V AV ++ DG  + S   D + ++W
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           ++P      T+AGHT+AV SV FSP+G  LAS S D  +++W           +GHK  +
Sbjct: 12  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             +AWS+D   LVS S    L+ WD  +GK     L GH  ++   ++ P          
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
           VS S D   RIWDV   KC+  L  H+  V+ V +  DG +I + S D   ++W+T  G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
            ++ L               +G ++ +  L     L   +     K Y+  +  K     
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
            ++   G   + +VSGS+D  +++W    +K+   ++ GH  +V      P    +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
              DK+IKL+
Sbjct: 302 LENDKTIKLF 311

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
           F   GH   V  + +S +G+ L S S    ++ W    GK     +SGHK  I+ ++W  
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
              ++     VSAS D   +IWDVS  KC+  L GH+  V C  +     +I +GS D +
Sbjct: 77  ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
           +++W+   GK ++ L  H   V+++  + + +L                           
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VS S D    +W+ A  +  KT +      V+ V FSP+G+++ +A+ D 
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           ++KLW+ + GK +  + GH    Y                       C  + +S +   +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 253
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
            ++SGS+D+ + +W+++T+++ Q L GH D V +    P    +AS     D+ +KL+
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 33/170 (19%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF-- 410
           K  + GH + V+ V FSP+G+W+AS+S DK IK+W    GKF     GH   +  + +  
Sbjct: 19  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 411 ----------------------ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448
                                 + +   +  SN+     + CC    +++  S L++SGS
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-----VFCC----NFNPQSNLIVSGS 129
Query: 449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
            D ++++WD++T K  + LP H+D V AV ++ DG  + S   D + ++W
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 131/307 (42%), Gaps = 64/307 (20%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
           T+ GHT++V  ++F   G+ LAS S D T++LWD      +    GH + V  ++   +G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
            H+VS S+   ++ W+ QTG       +GH++W+       V  N       S S D   
Sbjct: 205 DHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWV-----RMVRPNQDGTLIASCSNDQTV 258
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG---------------------VIYTGSQDC 261
           R+W V+ ++C   L  H   V C+ W  +                       + +GS+D 
Sbjct: 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
           TIK+W+ + G  +  L GH +WV             G   H+G ++              
Sbjct: 319 TIKMWDVSTGMCLMTLVGHDNWVR------------GVLFHSGGKF-------------- 352
Query: 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
                     ++S +DD T+ +W+    +  KT +  H+  V  + F     +V + S D
Sbjct: 353 ----------ILSCADDKTLRVWDYKNKRCMKT-LNAHEHFVTSLDFHKTAPYVVTGSVD 401
Query: 382 KSIKLWN 388
           +++K+W 
Sbjct: 402 QTVKVWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  102 bits (254), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 149/357 (41%), Gaps = 51/357 (14%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
           ++GH   V  V F P    + S S D T+++WD  T        GH + V  I++   GK
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
            L S S    ++ WD Q G      + GH   ++ +S  P   N      VSAS+D   +
Sbjct: 164 LLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVSIMP---NGD--HIVSASRDKTIK 217
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGH 282
           +W+V    CV   +GH   V  V+   DG +I + S D T++VW     +   EL+ H H
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342
            V  ++ + E +            YSS  E    A     K  G     L+SGS D T+ 
Sbjct: 278 VVECISWAPESS------------YSSISE----ATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
           +W+ +      T + GH   V  V F   G+++ S + DK++++W+    + +     H 
Sbjct: 322 MWDVSTGMCLMT-LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380
Query: 403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459
             V  + F     +                           +++GS D T+KVW+ R
Sbjct: 381 HFVTSLDFHKTAPY---------------------------VVTGSVDQTVKVWECR 410

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 141/324 (43%), Gaps = 54/324 (16%)
Query: 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL 236
           W P+   P    LSGH+  +T + + PV         VSAS+D   ++WD         L
Sbjct: 94  WIPRP--PEKYALSGHRSPVTRVIFHPVF-----SVMVSASEDATIKVWDYETGDFERTL 146
Query: 237 SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295
            GHT +V  + +   G ++ + S D TIK+W+    + IR + GH H V+S+++     +
Sbjct: 147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI-----M 201
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355
             G  DH                             +VS S D T+ +WE       KT 
Sbjct: 202 PNG--DH-----------------------------IVSASRDKTIKMWEVQTGYCVKT- 229
Query: 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415
            TGH++ V  V  + DG  +AS S D+++++W   T +  A  R H          ++ C
Sbjct: 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR--------HVVEC 281
Query: 416 FRY-PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 474
             + P + Y  +  +              LLSGS+D T+K+WD+ T      L GH + V
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341
Query: 475 FAVDWSPDGEKVASGGKDRVLKLW 498
             V +   G+ + S   D+ L++W
Sbjct: 342 RGVLFHSGGKFILSCADDKTLRVW 365

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 29/195 (14%)
Query: 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-KTRMTGHQQLV 363
           K+++S   ++K  +E  +K+   A E   SG         +  + + P K  ++GH+  V
Sbjct: 53  KKWTSVIRLQKKVMELESKL-NEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPV 111
Query: 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423
             V F P    + SAS D +IK+W+  TG F    +GH   V  I F+            
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD------------ 159
Query: 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
                             +LL S S D T+K+WD +  +  + + GH   V +V   P+G
Sbjct: 160 ---------------HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 484 EKVASGGKDRVLKLW 498
           + + S  +D+ +K+W
Sbjct: 205 DHIVSASRDKTIKMW 219

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 174/433 (40%), Gaps = 87/433 (20%)
Query: 99   RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL---- 154
             C  T+ GHT +V    FSPD   LAS S D T+RLWD+ +     K    K + L    
Sbjct: 734  ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSED 792
Query: 155  ----------CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204
                      C +WSADG  ++  +K  ++  +D  T        +GH   I    + P 
Sbjct: 793  PPEDVEVIVKCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 851
Query: 205  -HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCT 262
             HL       V A       +W++  R  V    GH   V  V +  DG  + T S D T
Sbjct: 852  DHLA------VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905
Query: 263  IKVWETTQG------KLIRELKGHGHWVNSLALSTE-------YALRTGAFDHTGKQYSS 309
            I+VWET +        L +E+        ++ L+ +        A +TG  D     Y  
Sbjct: 906  IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID-----YLP 960
Query: 310  PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNH 365
              ++    L  +        E +  G +D  + + E      P  R+     GH++ V H
Sbjct: 961  EAQVSCCCLSPH-------LEYVAFGDEDGAIKIIEL-----PNNRVFSSGVGHKKAVRH 1008
Query: 366  VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV 425
            + F+ DG+ + S+S D  I++WN  TG +V   + H   V   R                
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL--------------- 1052
Query: 426  VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK 485
                          DSR LLS S D T+KVW++ T ++++D   H   V +   S D  K
Sbjct: 1053 ------------LQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATK 1099
Query: 486  VASGGKDRVLKLW 498
             +S   D+  K+W
Sbjct: 1100 FSSTSADKTAKIW 1112

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 113/290 (38%), Gaps = 52/290 (17%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETT 269
           +R  S   D   +++     + ++ +  H   V C  +  D   I T S D  +K+W++ 
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
            GKL+     H   VN           T   +H                           
Sbjct: 688 TGKLVHTYDEHSEQVNCCHF-------TNKSNHL-------------------------- 714
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
             L +GS+DF + LW+    K+ +  M GH   VNH  FSPD + +AS S D +++LW+ 
Sbjct: 715 -LLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD- 771
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
                  V   +      ++   +     P +   +V   CC    SWSAD   ++  +K
Sbjct: 772 -------VRSANERKSINVKRFFLSSEDPPEDVEVIV--KCC----SWSADGDKIIVAAK 818
Query: 450 DSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           +  L ++DI T  L  ++  GH   +   D+SP             ++LW
Sbjct: 819 NKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 867

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 174/433 (40%), Gaps = 87/433 (20%)
Query: 99   RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL---- 154
             C  T+ GHT +V    FSPD   LAS S D T+RLWD+ +     K    K + L    
Sbjct: 741  ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSED 799
Query: 155  ----------CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204
                      C +WSADG  ++  +K  ++  +D  T        +GH   I    + P 
Sbjct: 800  PPEDVEVIVKCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 858
Query: 205  -HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCT 262
             HL       V A       +W++  R  V    GH   V  V +  DG  + T S D T
Sbjct: 859  DHLA------VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 912
Query: 263  IKVWETTQG------KLIRELKGHGHWVNSLALSTE-------YALRTGAFDHTGKQYSS 309
            I+VWET +        L +E+        ++ L+ +        A +TG  D     Y  
Sbjct: 913  IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID-----YLP 967
Query: 310  PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNH 365
              ++    L  +        E +  G +D  + + E      P  R+     GH++ V H
Sbjct: 968  EAQVSCCCLSPH-------LEYVAFGDEDGAIKIIEL-----PNNRVFSSGVGHKKAVRH 1015
Query: 366  VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV 425
            + F+ DG+ + S+S D  I++WN  TG +V   + H   V   R                
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL--------------- 1059
Query: 426  VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK 485
                          DSR LLS S D T+KVW++ T ++++D   H   V +   S D  K
Sbjct: 1060 ------------LQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATK 1106
Query: 486  VASGGKDRVLKLW 498
             +S   D+  K+W
Sbjct: 1107 FSSTSADKTAKIW 1119

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 113/290 (38%), Gaps = 52/290 (17%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETT 269
           +R  S   D   +++     + ++ +  H   V C  +  D   I T S D  +K+W++ 
Sbjct: 635 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 694
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
            GKL+     H   VN           T   +H                           
Sbjct: 695 TGKLVHTYDEHSEQVNCCHF-------TNKSNHL-------------------------- 721
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
             L +GS+DF + LW+    K+ +  M GH   VNH  FSPD + +AS S D +++LW+ 
Sbjct: 722 -LLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD- 778
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
                  V   +      ++   +     P +   +V   CC    SWSAD   ++  +K
Sbjct: 779 -------VRSANERKSINVKRFFLSSEDPPEDVEVIV--KCC----SWSADGDKIIVAAK 825
Query: 450 DSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           +  L ++DI T  L  ++  GH   +   D+SP             ++LW
Sbjct: 826 NKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 874

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 153/318 (48%), Gaps = 29/318 (9%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
           + GH + V++      G ++ SGS D T+++W   T   +    GH   V    WS+  +
Sbjct: 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 168
Query: 164 H--LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
              ++SGS    L+ W+ +TG+   + L GH   +       +HL+   +R VS S+D  
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTV-----RCMHLHE--KRVVSGSRDAT 220
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
            R+WD+   +C+  L GH  AV CV++ G  V+ +G+ D  +KVW+      +  L+GH 
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTLQGHT 279
Query: 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER---LVSGSDD 338
           + V SL     + + +G+ D + + +          L  +  +      +   LVSG+ D
Sbjct: 280 NRVYSLQFDGIHVV-SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 338
Query: 339 FTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
            T+ +W+    +  +T      HQ  V  + F+ +  +V ++S D ++KLW+  TG+F+ 
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIR 396
Query: 397 VFR-----GHVGPVYQIR 409
                   G  G V++IR
Sbjct: 397 NLVTLESGGSGGVVWRIR 414

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 126/304 (41%), Gaps = 64/304 (21%)
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG---DGVIYTGSQDCTIKVWET 268
           R VS S D   ++W     KC+  L GHT  V    W     D +I +GS D T+KVW  
Sbjct: 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNA 186
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
             G+ I  L GH   V  + L                                       
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLH-------------------------------------- 208
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            +R+VSGS D T+ +W+    +     M GH   V  V +  DG+ V S ++D  +K+W+
Sbjct: 209 EKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWD 265
Query: 389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY----------CVVDMSCCMSLYS-W 437
             T   +   +GH   VY ++F+ I+      +            C+  ++   SL S  
Sbjct: 266 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 325
Query: 438 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG---HADEVFAVDWSPDGEKVASGGKDRV 494
                +L+SG+ DST+K+WDI+T +  Q L G   H   V  + ++ +   V +   D  
Sbjct: 326 ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF--VITSSDDGT 383
Query: 495 LKLW 498
           +KLW
Sbjct: 384 VKLW 387

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 74/290 (25%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ 270
           ++ VS  +D   +IWD +  +C   L+GHT +V C+++  + VI TGS D T++VW+   
Sbjct: 144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNT 202
Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330
           G+++  L  H   V  L                                R+N        
Sbjct: 203 GEMLNTLIHHCEAVLHL--------------------------------RFNN------G 224
Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            +V+ S D ++ +W+ A       R  + GH+  VN V F  D +++ SAS D++IK+WN
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282
Query: 389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448
            +T +FV    GH           I C +Y                       RL++SGS
Sbjct: 283 TSTCEFVRTLNGHKRG--------IACLQYR---------------------DRLVVSGS 313
Query: 449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
            D+T+++WDI      + L GH + V  + +  D +++ SG  D  +K+W
Sbjct: 314 SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVW 361

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 31/128 (24%)
Query: 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSC 430
           D Q + S   D +IK+W+  T +   +  GH G V         C +Y            
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL--------CLQY------------ 181
Query: 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG 490
                    D R++++GS DST++VWD+ T ++   L  H + V  + +  +   + +  
Sbjct: 182 ---------DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCS 230
Query: 491 KDRVLKLW 498
           KDR + +W
Sbjct: 231 KDRSIAVW 238

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 162/379 (42%), Gaps = 87/379 (22%)
Query: 103 TIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCI 156
           T+  HT+ V ++A   D   +  S S D ++ LW L      +     + TGH ++V  +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
             S+DG+  +SGS  GEL+ WD   G  S     GH K +  ++      +   R+ VSA
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAG-VSTRRFVGHTKDVLSVA-----FSLDNRQIVSA 490
Query: 217 SKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGDGV---IYTGSQDCTIKVWETT 269
           S+D   ++W+ +L +C   +S    GH   V+CV++  + +   I + S D T+KVW  +
Sbjct: 491 SRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
             KL   L GH  +V+++A+S + +L                                  
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSL---------------------------------- 575
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
               SG  D  + LW+ A  K  K        +++ + FSP+  W+ +A+ +  IK+W+ 
Sbjct: 576 --CASGGKDGVVLLWDLAEGK--KLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDL 630
Query: 390 TTGKFVAVFR----------GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA 439
            +   V   +           + GP    R ++IYC                 +  +WSA
Sbjct: 631 ESKSIVEDLKVDLKAEAEKADNSGPAATKR-KVIYC-----------------TSLNWSA 672
Query: 440 DSRLLLSGSKDSTLKVWDI 458
           D   L SG  D  ++VW I
Sbjct: 673 DGSTLFSGYTDGVIRVWGI 691

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 111/271 (40%), Gaps = 66/271 (24%)
Query: 235 CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ-----GKLIRELKGHGHWVNSL 287
            +  HT  VT +    D   +I + S+D +I +W+ T+     G   R L GH H+V  +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347
            LS++     G F                                +SGS D  + LW+ A
Sbjct: 437 VLSSD-----GQF-------------------------------ALSGSWDGELRLWDLA 460
Query: 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407
                + R  GH + V  V FS D + + SAS D++IKLWN        +  G  G    
Sbjct: 461 AGVSTR-RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG---- 515
Query: 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 467
              + + C R+  N                      ++S S D T+KVW++   KL+  L
Sbjct: 516 -HRDWVSCVRFSPNTL-----------------QPTIVSASWDKTVKVWNLSNCKLRSTL 557
Query: 468 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
            GH   V  V  SPDG   ASGGKD V+ LW
Sbjct: 558 AGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 26/194 (13%)
Query: 331 RLVSGSDDFTMFLWEPAVSKQ--------PKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
           ++VS S D T+  W P   +         P  R+ GH   V+ V  S +G +  SAS+D 
Sbjct: 30  KVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDH 89
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRF-----ELIYCFRYPSNFYCVVDMSCCMSL--- 434
           S++LWN   G+    F GH   V  + F     +++   R  +     V   C  +L   
Sbjct: 90  SLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG 149
Query: 435 ----------YSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
                     +S S D+ +++SG  D+ +KVWD+ T +L  DL GH + V +V  SPDG 
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 485 KVASGGKDRVLKLW 498
             AS  KD V +LW
Sbjct: 210 LCASSDKDGVARLW 223

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 136/359 (37%), Gaps = 75/359 (20%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
           GH N VLC+ W  D + +VS S+ G++  WD  T     + ++    W+   ++ P    
Sbjct: 62  GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-HAVTMPCTWVMACAYAPSGCA 120
Query: 208 APCRRFVSASKDGDARIW--------DVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
             C        D    ++        +++ +K  + +  + L+  C     D  I T S 
Sbjct: 121 IAC-----GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA-CSFTNSDMQILTASG 174
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
           D T  +W+   G+L++   GHG  V  L L+                   P E       
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLA-------------------PSET------ 209
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
                 GN     VSG  D    +W+   S Q       H+  VN V + P G   AS S
Sbjct: 210 ------GNT---FVSGGCDKKAMVWDMR-SGQCVQAFETHESDVNSVRYYPSGDAFASGS 259
Query: 380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA 439
            D + +L++    + VA++          +  +I+                  S   +S 
Sbjct: 260 DDATCRLYDLRADREVAIYS---------KESIIFG----------------ASSVDFSL 294
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
             RLL +G  D T+ VWD+        L GH + V  +  SPDG    SG  D  L++W
Sbjct: 295 SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 35/353 (9%)
Query: 58  ISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLS 113
           +S+ + L      L+       K  +     Q    I PV R       T+ GH   + +
Sbjct: 1   MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
           + +  D R L S S D  + +WD  T   +       +WV+  A++  G ++  G     
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 174 LQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARI 224
              ++ +T + +      L+GH  +++            C RF      V++S D    +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCAL 168
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHW 283
           WD+   +     +GHT  V  +    D  ++ +G+ D + K+W+  +G   +   GH   
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 284 VNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSG 335
           +N++       A  TG+ D T + +    + +       N I G        +   L++G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            DDF   +W+ A+       + GH   V+ +  + DG  VA+ S+D  +K+WN
Sbjct: 289 YDDFNCNVWD-ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 114/292 (39%), Gaps = 32/292 (10%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
           L GH   +  + WG D  ++ + SQD  + +W++     +  +     WV + A + +  
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
            +  G  D+    Y+         + R  ++ G+             ++V+ S D T  L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
           W+    +Q  T    H   V  +  +PD +   S + D S KLW+   G     F GH  
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFE---------------LIYCFRYPSNF--YCVVDMSCCMSLYSWSADSRLLLS 446
            +  I F                 ++  R       Y   ++ C ++  S+S   RLLL+
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           G  D    VWD         L GH + V  +  + DG  VA+G  D  LK+W
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 35/353 (9%)
Query: 58  ISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLS 113
           +S+ + L      L+       K  +     Q    I PV R       T+ GH   + +
Sbjct: 1   MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
           + +  D R L S S D  + +WD  T   +       +WV+  A++  G ++  G     
Sbjct: 61  MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 174 LQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARI 224
              ++ +T + +      L+GH  +++            C RF      V++S D    +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCAL 168
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHW 283
           WD+   +     +GHT  V  +    D  ++ +G+ D + K+W+  +G   +   GH   
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 284 VNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSG 335
           +N++       A  TG+ D T + +    + +       N I G        +   L++G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            DDF   +W+ A+       + GH   V+ +  + DG  VA+ S+D  +K+WN
Sbjct: 289 YDDFNCNVWD-ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 114/292 (39%), Gaps = 32/292 (10%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
           L GH   +  + WG D  ++ + SQD  + +W++     +  +     WV + A + +  
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
            +  G  D+    Y+         + R  ++ G+             ++V+ S D T  L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
           W+    +Q  T    H   V  +  +PD +   S + D S KLW+   G     F GH  
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFE---------------LIYCFRYPSNF--YCVVDMSCCMSLYSWSADSRLLLS 446
            +  I F                 ++  R       Y   ++ C ++  S+S   RLLL+
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           G  D    VWD         L GH + V  +  + DG  VA+G  D  LK+W
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 35/340 (10%)
Query: 71  LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASG 126
           L+       K  +     Q    I PV R       T+ GH   + ++ +  D R L S 
Sbjct: 25  LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSA 84
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS- 185
           S D  + +WD  T   +       +WV+  A++  G ++  G        ++ +T + + 
Sbjct: 85  SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 144
Query: 186 --GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLS 237
                L+GH  +++            C RF      V++S D    +WD+   +     +
Sbjct: 145 RVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 192
Query: 238 GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYAL 295
           GHT  V  +    D  ++ +G+ D + K+W+  +G   +   GH   +N++       A 
Sbjct: 193 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 252
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAV 348
            TG+ D T + +    + +       N I G        +   L++G DDF   +W+ A+
Sbjct: 253 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-AL 311
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
                  + GH   V+ +  + DG  VA+ S+D  +K+WN
Sbjct: 312 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 114/292 (39%), Gaps = 32/292 (10%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
           L GH   +  + WG D  ++ + SQD  + +W++     +  +     WV + A + +  
Sbjct: 62  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 121
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
            +  G  D+    Y+         + R  ++ G+             ++V+ S D T  L
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 179
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
           W+    +Q  T    H   V  +  +PD +   S + D S KLW+   G     F GH  
Sbjct: 180 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 404 PVYQIRFE---------------LIYCFRYPSNF--YCVVDMSCCMSLYSWSADSRLLLS 446
            +  I F                 ++  R       Y   ++ C ++  S+S   RLLL+
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 298
Query: 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           G  D    VWD         L GH + V  +  + DG  VA+G  D  LK+W
Sbjct: 299 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 35/340 (10%)
Query: 71  LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASG 126
           L+       K  +     Q    I PV R       T+ GH   + ++ +  D R L S 
Sbjct: 14  LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSA 73
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS- 185
           S D  + +WD  T   +       +WV+  A++  G ++  G        ++ +T + + 
Sbjct: 74  SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 186 --GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLS 237
                L+GH  +++            C RF      V++S D    +WD+   +     +
Sbjct: 134 RVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 238 GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYAL 295
           GHT  V  +    D  ++ +G+ D + K+W+  +G   +   GH   +N++       A 
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAV 348
            TG+ D T + +    + +       N I G        +   L++G DDF   +W+ A+
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-AL 300
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
                  + GH   V+ +  + DG  VA+ S+D  +K+WN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 114/292 (39%), Gaps = 32/292 (10%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
           L GH   +  + WG D  ++ + SQD  + +W++     +  +     WV + A + +  
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
            +  G  D+    Y+         + R  ++ G+             ++V+ S D T  L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
           W+    +Q  T    H   V  +  +PD +   S + D S KLW+   G     F GH  
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFE---------------LIYCFRYPSNF--YCVVDMSCCMSLYSWSADSRLLLS 446
            +  I F                 ++  R       Y   ++ C ++  S+S   RLLL+
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           G  D    VWD         L GH + V  +  + DG  VA+G  D  LK+W
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 156/367 (42%), Gaps = 73/367 (19%)
Query: 102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL-----NTQTPMFKCTGHKNWVLC 155
            T+ GH   V  +A +P     + S S D T+ +W L     N   P     GH ++V  
Sbjct: 32  GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           +  S+DG+  +SGS  G L+ WD  TG  +     GH K +  ++      ++  R+ VS
Sbjct: 92  VVISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVGHTKDVLSVA-----FSSDNRQIVS 145
Query: 216 ASKDGDARIWD-VSLRKCVICLSGHTLAVTCVKW---GGDGVIYTGSQDCTIKVWETTQG 271
            S+D   ++W+ + + K  +    H+  V+CV++     + +I +   D  +KVW     
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
           KL     GH  ++N++ +S + +L                                    
Sbjct: 206 KLKTNHIGHTGYLNTVTVSPDGSL------------------------------------ 229
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391
             SG  D    LW+    K   T   G   ++N + FSP+  W+ +A+   SIK+W+   
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAAT-GPSIKIWD-LE 285
Query: 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451
           GK +         V +++ E+I       +     +   C SL +WSAD + L +G  D+
Sbjct: 286 GKII---------VDELKQEVI-------STSSKAEPPQCTSL-AWSADGQTLFAGYTDN 328
Query: 452 TLKVWDI 458
            ++VW +
Sbjct: 329 LVRVWQV 335

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 111/266 (41%), Gaps = 61/266 (22%)
Query: 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316
           G+++   +   T Q  L   LKGH  WV  +A + ++                       
Sbjct: 14  GTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQF----------------------- 50
Query: 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDG 372
                       P+ ++S S D T+ +W+    +     P+  + GH   V+ V  S DG
Sbjct: 51  ------------PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG 98
Query: 373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF-----ELIYCFRYPS------- 420
           Q+  S S+D +++LW+ TTG     F GH   V  + F     +++   R  +       
Sbjct: 99  QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158
Query: 421 --NFYCVVD------MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
               Y V D      +SC    +S ++ + +++S   D  +KVW++   KLK +  GH  
Sbjct: 159 GVCKYTVQDESHSEWVSCVR--FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
            +  V  SPDG   ASGGKD    LW
Sbjct: 217 YLNTVTVSPDGSLCASGGKDGQAMLW 242

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 35/340 (10%)
Query: 71  LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASG 126
           L+       K  +     Q    I PV R       T+ GH   + ++ +  D R L S 
Sbjct: 14  LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSA 73
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS- 185
           S D  + +WD  T   +       +WV+  A++  G ++  G        ++ +T + + 
Sbjct: 74  SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 186 --GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLS 237
                L+GH  +++            C RF      V++S D    +WD+   +     +
Sbjct: 134 RVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 238 GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYAL 295
           GHT  V  +    D  ++ +G+ D + K+W+  +G   +   GH   +N++       A 
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAV 348
            TG+ D T + +    + +       N I G        +   L++G DDF   +W+ A+
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-AL 300
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
                  + GH   V+ +  + DG  VA+ S+D  +K+WN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 114/292 (39%), Gaps = 32/292 (10%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
           L GH   +  + WG D  ++ + SQD  + +W++     +  +     WV + A + +  
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
            +  G  D+    Y+         + R  ++ G+             ++V+ S D T  L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
           W+    +Q  T    H   V  +  +PD +   S + D S KLW+   G     F GH  
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFE---------------LIYCFRYPSNF--YCVVDMSCCMSLYSWSADSRLLLS 446
            +  I F                 ++  R       Y   ++ C ++  S+S   RLLL+
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           G  D    VWD         L GH + V  +  + DG  VA+G  D  LK+W
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 156/367 (42%), Gaps = 73/367 (19%)
Query: 102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL-----NTQTPMFKCTGHKNWVLC 155
            T+ GH   V  +A +P     + S S D T+ +W L     N   P     GH ++V  
Sbjct: 9   GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           +  S+DG+  +SGS  G L+ WD  TG  +     GH K +  ++      ++  R+ VS
Sbjct: 69  VVISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVGHTKDVLSVA-----FSSDNRQIVS 122
Query: 216 ASKDGDARIWD-VSLRKCVICLSGHTLAVTCVKW---GGDGVIYTGSQDCTIKVWETTQG 271
            S+D   ++W+ + + K  +    H+  V+CV++     + +I +   D  +KVW     
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
           KL     GH  ++N++ +S + +L                                    
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSL------------------------------------ 206
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391
             SG  D    LW+    K   T   G   ++N + FSP+  W+ +A+   SIK+W+   
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAAT-GPSIKIWD-LE 262
Query: 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451
           GK +         V +++ E+I       +     +   C SL +WSAD + L +G  D+
Sbjct: 263 GKII---------VDELKQEVI-------STSSKAEPPQCTSL-AWSADGQTLFAGYTDN 305
Query: 452 TLKVWDI 458
            ++VW +
Sbjct: 306 LVRVWQV 312

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 106/255 (41%), Gaps = 61/255 (23%)
Query: 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327
           T Q  L   LKGH  WV  +A + ++                                  
Sbjct: 2   TEQMTLRGTLKGHNGWVTQIATTPQF---------------------------------- 27
Query: 328 APERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383
            P+ ++S S D T+ +W+    +     P+  + GH   V+ V  S DGQ+  S S+D +
Sbjct: 28  -PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 86
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQIRF-----ELIYCFRYPS---------NFYCVVD-- 427
           ++LW+ TTG     F GH   V  + F     +++   R  +           Y V D  
Sbjct: 87  LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES 146
Query: 428 ----MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
               +SC    +S ++ + +++S   D  +KVW++   KLK +  GH   +  V  SPDG
Sbjct: 147 HSEWVSCVR--FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 484 EKVASGGKDRVLKLW 498
              ASGGKD    LW
Sbjct: 205 SLCASGGKDGQAMLW 219

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 132/335 (39%), Gaps = 72/335 (21%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTT-----------VRLWD----------LNTQTPMFK 145
           HT  V  V FS DG  LA+G   TT            RL D          LNT +    
Sbjct: 63  HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS---- 118
Query: 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
                 ++  + +S DGK L +G++   ++ WD +  K     L GH++ I  + + P  
Sbjct: 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV-MILQGHEQDIYSLDYFP-- 175
Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIK 264
                 + VS S D   RIWD+   +C + LS      T     GDG  I  GS D  ++
Sbjct: 176 ---SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 232
Query: 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324
           VW++  G L+  L             +E    TG  D                   Y+ +
Sbjct: 233 VWDSETGFLVERL------------DSENESGTGHKDSV-----------------YSVV 263
Query: 325 KGNAPERLVSGSDDFTMFLWE------PAVSKQPKT-----RMTGHQQLVNHVYFSPDGQ 373
                + +VSGS D ++ LW        + SK P +        GH+  V  V  + + +
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 323
Query: 374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
           ++ S S D+ +  W+  +G  + + +GH   V  +
Sbjct: 324 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 148/394 (37%), Gaps = 103/394 (26%)
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKA---------GELQCW---------DPQTGKP 184
           + K   H + V C+ +S DG++L +G            G L            DP+    
Sbjct: 57  LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 116
Query: 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244
           S +P S    +I  + + P       +   + ++D   RIWD+  RK V+ L GH   + 
Sbjct: 117 SSSPSS--DLYIRSVCFSP-----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 169
Query: 245 CVKW--GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
            + +   GD ++ +GS D T+++W+   G+             SL LS E  + T A   
Sbjct: 170 SLDYFPSGDKLV-SGSGDRTVRIWDLRTGQC------------SLTLSIEDGVTTVAVSP 216
Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
              +Y                I   + +R V   D  T FL E   S+      TGH+  
Sbjct: 217 GDGKY----------------IAAGSLDRAVRVWDSETGFLVERLDSENESG--TGHKDS 258
Query: 363 VNHVYFSPDGQWVASASFDKSIKLWN------------GTTGKFVAVFRGHVGPVYQIRF 410
           V  V F+ DGQ V S S D+S+KLWN              +G     + GH   V  +  
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV-- 316
Query: 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH 470
                                    + + +   +LSGSKD  +  WD ++      L GH
Sbjct: 317 -------------------------ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351
Query: 471 ADEVFAV------DWSPDGEKVASGGKDRVLKLW 498
            + V +V         P+    A+G  D   ++W
Sbjct: 352 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 88/177 (49%), Gaps = 18/177 (10%)
Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRM---TGHQQLVNHVYFSPDGQWVASASFDKS 383
           + P+ L   ++D+   L+ PA+ ++    +     H  +V  V FS DG+++A+   +K+
Sbjct: 29  SVPDALKKQTNDY-YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKT 86
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS--WSADS 441
            +++  + G  VA                    + P N       S  + + S  +S D 
Sbjct: 87  TQVYRVSDGSLVARLSDDSA-----------ANKDPENLNTSSSPSSDLYIRSVCFSPDG 135
Query: 442 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           + L +G++D  +++WDI  +K+   L GH  +++++D+ P G+K+ SG  DR +++W
Sbjct: 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC--IAWSAD 161
           ++GH   V ++ ++  G  L SGS D TVR+WD+          GH + V C  I    +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 162 GKHLVSGSKAGELQCWD-------PQTGK----------PSGNP-----LSGHKKWITGI 199
            K++V+GS+   L  W        P  G+          P  NP     L GH   +  +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
           S    H N      VS S D    +WDV+  KC+  LSGHT  +    +  +     + S
Sbjct: 277 SG---HGNI----VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
            D TI++W+   G+L+  L+GH   V  L LS ++ +   A
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAA 370

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 154/354 (43%), Gaps = 62/354 (17%)
Query: 174 LQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
           L+ W      P    L GH    IT + +E  ++       ++ + D   R++D   +K 
Sbjct: 102 LKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYV-------ITGADDKMIRVYDSINKKF 154
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
           ++ LSGH   V  +K+   G++ +GS D T++VW+  +G      +GH   V  L +  E
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI-VE 213
Query: 293 YA----LRTGAFDHT---------------GKQ------YSSPEE------MKKAALERY 321
           Y     + TG+ D+T               G++      + +PEE      + +  +   
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273
Query: 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
             + G+    +VSGS D T+ +W+ A  K     ++GH   +    +  + +   SAS D
Sbjct: 274 RTVSGHG-NIVVSGSYDNTLIVWDVAQMKCLYI-LSGHTDRIYSTIYDHERKRCISASMD 331
Query: 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR--------------YPSNF-YCVV 426
            +I++W+   G+ +   +GH   V  +R    +                 Y   F Y   
Sbjct: 332 TTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT 391
Query: 427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDW 479
           ++S   + Y       +L+SGS++    ++++R+ KL   ++   AD++++V++
Sbjct: 392 NLSAITTFY---VSDNILVSGSENQ-FNIYNLRSGKLVHANILKDADQIWSVNF 441

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
           P  L+S S D T+  W+     Q    P     GH  +V     + DG +  SAS+DK++
Sbjct: 30  PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFE-----LIYCFRYPSNFYCVVDMSCCMSLY---S 436
           +LW+  TG+    F GH   V  +  +     +I   R  +     +   C  +L     
Sbjct: 90  RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 437 WSA------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
           W +            DS  ++S   D  +K W++   +++ D  GH   +  +  SPDG 
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 485 KVASGGKDRVLKLW 498
            +AS GKD  + LW
Sbjct: 210 LIASAGKDGEIMLW 223

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92  FRIRPVNRCSAT----IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
           FRIR  N  +         H + + S+A  P    + SGS D TV+LW+      + +  
Sbjct: 77  FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
            GH+++V+C+A++  D     SG     ++ W      P+    +G ++ +  + + P+ 
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
              P + + ++AS D   +IWD   + CV  L GH   V+   +     +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
           K+W ++  K+ + L 
Sbjct: 253 KIWNSSTYKVEKTLN 267

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 110/259 (42%), Gaps = 39/259 (15%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPE- 311
           I  GS D  I+V+    G+ + + + H  ++ S+A+  T+  + +G+ D T K ++    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 312 ---EMKKAALERYN---KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
              E      E +          P    SG  D T+ +W    S    T  TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423
           V  Y  PD  ++ +AS D +IK+W+  T   VA   GH+  V                  
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV------------------ 231
Query: 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
                    S   +     +++SGS+D TLK+W+  T K+++ L    +  + +   P G
Sbjct: 232 ---------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 484 EK--VASGGKDRVLKLWMG 500
            K  +ASG  +    L +G
Sbjct: 283 RKNYIASGFDNGFTVLSLG 301

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
           P  L+S S D T+  W+     Q    P     GH  +V     + DG +  SAS+DK++
Sbjct: 30  PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFE-----LIYCFRYPSNFYCVVDMSCCMSLY---S 436
           +LW+  TG+    F GH   V  +  +     +I   R  +     +   C  +L     
Sbjct: 90  RLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 437 WSA------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
           W +            DS  ++S   D  +K W++   +++ D  GH   +  +  SPDG 
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 485 KVASGGKDRVLKLW 498
            +AS GKD  + LW
Sbjct: 210 LIASAGKDGEIXLW 223

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
           P  L+S S D T+  W+     Q    P     GH  +V     + DG +  SAS+DK++
Sbjct: 30  PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFE-----LIYCFRYPSNFYCVVDMSCCMSLY---S 436
           +LW+  TG+    F GH   V  +  +     +I   R  +     +   C  +L     
Sbjct: 90  RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 437 WSA------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
           W +            DS  ++S   D  +K W++   +++ D  GH   +  +  SPDG 
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 485 KVASGGKDRVLKLW 498
            +AS GKD  + LW
Sbjct: 210 LIASAGKDGEIMLW 223

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 33/221 (14%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC--IAWSAD 161
           ++GH   V ++ ++  G  L SGS D TVR+WD+          GH + V C  I    +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 162 GKHLVSGSKAGELQCWD-------PQTGK----------PSGNP-----LSGHKKWITGI 199
            K++V+GS+   L  W        P  G+          P  NP     L GH   +  +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
           S    H N      VS S D    +WDV+  KC+  LSGHT  +    +  +     + S
Sbjct: 277 SG---HGNI----VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
            D TI++W+   G+L   L+GH   V  L LS ++ +   A
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAA 370

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 149/353 (42%), Gaps = 60/353 (16%)
Query: 174 LQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
           L+ W      P    L GH    IT + +E  ++       ++ + D   R++D   +K 
Sbjct: 102 LKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYV-------ITGADDKXIRVYDSINKKF 154
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
           ++ LSGH   V  +K+   G++ +GS D T++VW+  +G      +GH   V  L +  E
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI-VE 213
Query: 293 YA----LRTGAFDHTGKQYSSPEE--MKKAALERYNKIKGNAPER--------------- 331
           Y     + TG+ D+T   +  P+E  +     E    +  + PE                
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV 273
Query: 332 ---------LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
                    +VSGS D T+ +W+ A  K     ++GH   +    +  + +   SAS D 
Sbjct: 274 RTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYI-LSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR--------------YPSNF-YCVVD 427
           +I++W+   G+     +GH   V  +R    +                 Y   F Y   +
Sbjct: 333 TIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 392
Query: 428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDW 479
           +S   + Y       +L+SGS++    ++++R+ KL   ++   AD++++V++
Sbjct: 393 LSAITTFY---VSDNILVSGSENQ-FNIYNLRSGKLVHANILKDADQIWSVNF 441

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
           P  L+S S D T+  W+     Q    P     GH  +V     + DG +  SAS+DK++
Sbjct: 30  PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFE-----LIYCFRYPSNFYCVVDMSCCMSLY---S 436
           +LW+  TG+    F GH   V  +  +     +I   R  +     +   C  +L     
Sbjct: 90  RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 437 WSA------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
           W +            DS  ++S   D  +K W++   +++ D  GH   +  +  SPDG 
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 485 KVASGGKDRVLKLW 498
            +AS GKD  + LW
Sbjct: 210 LIASAGKDGEIMLW 223

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92  FRIRPVNRCSAT----IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
           FRIR  N  +         H + + S+A  P    + SGS D TV+LW+      + +  
Sbjct: 77  FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
            GH+++V+C+A++  D     SG     ++ W      P+    +G ++ +  + + P+ 
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
              P + + ++AS D   +IWD   + CV  L GH   V+   +     +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
           K+W ++  K+ + L 
Sbjct: 253 KIWNSSTYKVEKTLN 267

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 39/259 (15%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPE- 311
           I  GS D  I+V+    G+ + + + H  ++ S+A+  T+  + +G+ D T K ++    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 312 ---EMKKAALERYN---KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
              E      E +          P    SG  D T+ +W    S    T  TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423
           V  Y  PD  ++ +AS D +IK+W+  T   VA   GH+  V        +   +P+   
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS-------FAVFHPT--- 239
Query: 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
                              +++SGS+D TLK+W+  T K+++ L    +  + +   P G
Sbjct: 240 -----------------LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 484 EK--VASGGKDRVLKLWMG 500
            K  +ASG  +    L +G
Sbjct: 283 RKNYIASGFDNGFTVLSLG 301

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
           P  L+S S D T+  W+     Q    P     GH  +V     + DG +  SAS+DK++
Sbjct: 30  PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFE-----LIYCFRYPSNFYCVVDMSCCMSLY---S 436
           +LW+  TG+    F GH   V  +  +     +I   R  +     +   C  +L     
Sbjct: 90  RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 437 WSA------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
           W +            DS  ++S   D  +K W++   +++ D  GH   +  +  SPDG 
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 485 KVASGGKDRVLKLW 498
            +AS GKD  + LW
Sbjct: 210 LIASAGKDGEIMLW 223

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
           P  L+S S D T+  W+     Q    P     GH  +V     + DG +  SAS+DK++
Sbjct: 24  PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 83
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFE-----LIYCFRYPSNFYCVVDMSCCMSLY---S 436
           +LW+  TG+    F GH   V  +  +     +I   R  +     +   C  +L     
Sbjct: 84  RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 143
Query: 437 WSA------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
           W +            DS  ++S   D  +K W++   +++ D  GH   +  +  SPDG 
Sbjct: 144 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 203
Query: 485 KVASGGKDRVLKLW 498
            +AS GKD  + LW
Sbjct: 204 LIASAGKDGEIMLW 217

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92  FRIRPVNRCSAT----IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
           FRIR  N  +         H + + S+A  P    + SGS D TV+LW+      + +  
Sbjct: 77  FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
            GH+++V+C+A++  D     SG     ++ W      P+    +G ++ +  + + P+ 
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
              P + + ++AS D   +IWD   + CV  L GH   V+   +     +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
           K+W ++  K+ + L 
Sbjct: 253 KIWNSSTYKVEKTLN 267

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 110/259 (42%), Gaps = 39/259 (15%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPE- 311
           I  GS D  I+V+    G+ + + + H  ++ S+A+  T+  + +G+ D T K ++    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 312 ---EMKKAALERYN---KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
              E      E +          P    SG  D T+ +W    S    T  TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423
           V  Y  PD  ++ +AS D +IK+W+  T   VA   GH+  V                  
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV------------------ 231
Query: 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
                    S   +     +++SGS+D TLK+W+  T K+++ L    +  + +   P G
Sbjct: 232 ---------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 484 EK--VASGGKDRVLKLWMG 500
            K  +ASG  +    L +G
Sbjct: 283 RKNYIASGFDNGFTVLSLG 301

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD 427
           F     W+   S D  I+++N  TG+ V  F  H   +  I         +P+  Y    
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-------HPTKPY---- 111
Query: 428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEK 485
                           +LSGS D T+K+W+      L+Q   GH   V  V ++P D   
Sbjct: 112 ----------------VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 486 VASGGKDRVLKLW 498
            ASG  DR +K+W
Sbjct: 156 FASGCLDRTVKVW 168

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92  FRIRPVNRCSAT----IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
           FRIR  N  +         H + + S+A  P    + SGS D TV+LW+      + +  
Sbjct: 77  FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
            GH+++V+C+A++  D     SG     ++ W      P+    +G ++ +  + + P+ 
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
              P + + ++AS D   +IWD   + CV  L GH   V+   +     +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
           K+W ++  K+ + L 
Sbjct: 253 KIWNSSTYKVEKTLN 267

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 110/259 (42%), Gaps = 39/259 (15%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPE- 311
           I  GS D  I+V+    G+ + + + H  ++ S+A+  T+  + +G+ D T K ++    
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 312 ---EMKKAALERYN---KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
              E      E +          P    SG  D T+ +W    S    T  TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423
           V  Y  PD  ++ +AS D +IK+W+  T   VA   GH+  V                  
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV------------------ 231
Query: 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
                    S   +     +++SGS+D TLK+W+  T K+++ L    +  + +   P G
Sbjct: 232 ---------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 484 EK--VASGGKDRVLKLWMG 500
            K  +ASG  +    L +G
Sbjct: 283 RKNYIASGFDNGFTVLSLG 301

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD 427
           F     W+   S D  I+++N  TG+ V  F  H   +  I         +P+  Y    
Sbjct: 63  FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-------HPTKPY---- 111
Query: 428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEK 485
                           +LSGS D T+K+W+      L+Q   GH   V  V ++P D   
Sbjct: 112 ----------------VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 486 VASGGKDRVLKLW 498
            ASG  DR +K+W
Sbjct: 156 FASGCLDRTVKVW 168

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 7/188 (3%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
           ++ GH   V+SV  S      AS S D  +RLWDL     +            +A+S D 
Sbjct: 75  SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
           ++L +G+  G++  +  ++GK     L    K+I  I++ P       +   S + DG  
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSP-----DGKYLASGAIDGII 188
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
            I+D++  K +  L GH + +  + +  D  ++ T S D  IK+++     L   L GH 
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Query: 282 HWVNSLAL 289
            WV ++A 
Sbjct: 249 SWVLNVAF 256

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 122/297 (41%), Gaps = 43/297 (14%)
Query: 214 VSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQ 270
           V+ S D   ++W     +  +   L GH L V  V       +  + S D  I++W+   
Sbjct: 52  VTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN 111
Query: 271 GKLIRELKGH--GHWVNSLALSTEYALRTGAFDHTGKQ--YSSPEEMKKAALERYNKIK- 325
           GK I+ +       W  + +  ++Y L TG   H GK   +      K+ +L+   K   
Sbjct: 112 GKQIKSIDAGPVDAWTLAFSPDSQY-LATGT--HVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 326 --GNAPE--RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
               +P+   L SG+ D  + +++ A  K   T + GH   +  + FSPD Q + +AS D
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHT-LEGHAMPIRSLTFSPDSQLLVTASDD 227
Query: 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS 441
             IK+++           GH   V  + F                    C        D 
Sbjct: 228 GYIKIYDVQHANLAGTLSGHASWVLNVAF--------------------C-------PDD 260
Query: 442 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
              +S S D ++KVWD+ T+        H D+V+ V ++ +G K+ S G D+ + ++
Sbjct: 261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 144/370 (38%), Gaps = 81/370 (21%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH-- 205
           GH   V  + W+ +   +VS S+ G L  W+  T + + + +  H  W+   ++ P    
Sbjct: 64  GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT-HAIKLHCPWVMECAFAPNGQS 122
Query: 206 -----LNAPCRRF---VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIY 255
                L++ C  F     A +DG+  +  V        L+GH    +  ++  D    + 
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRV--------LTGHKGYASSCQYVPDQETRLI 174
Query: 256 TGSQDCTIKVWETTQGKLIRELKGH---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312
           TGS D T  +W+ T G+ I         GH  + L+LS                      
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS---------------------- 212
Query: 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
                    N +  N     +SGS D T+ LW+  ++ +      GH+  +N V F PDG
Sbjct: 213 --------INSLNANM---FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM 432
           Q   + S D + +L++  TG  + V+                  R P      + +   +
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYN-----------------REPDRNDNELPI---V 301
Query: 433 SLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL----PGHADEVFAVDWSPDGEKVAS 488
           +  ++S   RLL +G  +    VWD    ++  +L      H   +  +  S DG  + +
Sbjct: 302 TSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361
Query: 489 GGKDRVLKLW 498
           G  D+ LK+W
Sbjct: 362 GSWDKNLKIW 371

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 115/290 (39%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
           E + SVA+  +G  LA G+    V+LWD+  Q  +   T H   V  ++W  +   L SG
Sbjct: 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSG 205
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
           S++G +   D +  +     LSGH + + G+ W P       R   S   D    +W  +
Sbjct: 206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 260
Query: 229 LRKC----VICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
             +     +   + H  AV  V W      V+ T  G+ D  I++W    G  +  +  H
Sbjct: 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
              V S+  S  Y                                    + L+SG     
Sbjct: 321 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 343
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
             + +W+ P ++K     + GH   V  +  SPDG  VASA+ D++++LW
Sbjct: 344 NQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 106/271 (39%), Gaps = 44/271 (16%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
           ++ V W  +G  +  G+    +++W+  Q K +R +  H   V SL+ ++ Y L +G+  
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 208
Query: 302 -HTGKQYSSPEEMKKAALERYNKIKGN---APE--RLVSGSDDFTMFLWEPAVSKQ---P 352
            H         E   A L  +++       AP+   L SG +D  + +W  A  +    P
Sbjct: 209 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268
Query: 353 KTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409
               T HQ  V  V + P   +       + D+ I++WN  +G  ++    H        
Sbjct: 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-------- 320
Query: 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIRTQKLKQDL 467
                                C  L  WS   + L+SG     + L +W   T     +L
Sbjct: 321 ------------------SQVCSIL--WSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 360
Query: 468 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
            GH   V ++  SPDG  VAS   D  L+LW
Sbjct: 361 KGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 115/290 (39%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
           E + SVA+  +G  LA G+    V+LWD+  Q  +   T H   V  ++W  +   L SG
Sbjct: 159 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSG 216
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
           S++G +   D +  +     LSGH + + G+ W P       R   S   D    +W  +
Sbjct: 217 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 271
Query: 229 LRKC----VICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
             +     +   + H  AV  V W      V+ T  G+ D  I++W    G  +  +  H
Sbjct: 272 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
              V S+  S  Y                                    + L+SG     
Sbjct: 332 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 354
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
             + +W+ P ++K     + GH   V  +  SPDG  VASA+ D++++LW
Sbjct: 355 NQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 106/271 (39%), Gaps = 44/271 (16%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
           ++ V W  +G  +  G+    +++W+  Q K +R +  H   V SL+ ++ Y L +G+  
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 219
Query: 302 -HTGKQYSSPEEMKKAALERYNKIKGN---APE--RLVSGSDDFTMFLWEPAVSKQ---P 352
            H         E   A L  +++       AP+   L SG +D  + +W  A  +    P
Sbjct: 220 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 279
Query: 353 KTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409
               T HQ  V  V + P   +       + D+ I++WN  +G  ++    H        
Sbjct: 280 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-------- 331
Query: 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIRTQKLKQDL 467
                                C  L  WS   + L+SG     + L +W   T     +L
Sbjct: 332 ------------------SQVCSIL--WSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 371
Query: 468 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
            GH   V ++  SPDG  VAS   D  L+LW
Sbjct: 372 KGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 113/291 (38%), Gaps = 49/291 (16%)
Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSGS 169
           V SV +S DG  L+ G G+  V ++D+ +QT +    GH+  V C++W+   +H L SGS
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGS 193
Query: 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229
           ++G +   D +        L GH   + G++W    L     +  S   D   +IWD   
Sbjct: 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-----QLASGGNDNVVQIWDARS 248
Query: 230 RKCVICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGHGHWVN 285
                  + H  AV  V W      ++ T  G+ D  I  W    G  +  +   G  V 
Sbjct: 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVT 307
Query: 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345
           SL  S                  S E M                     G  D  + +W 
Sbjct: 308 SLIWSPH----------------SKEIMS------------------THGFPDNNLSIWS 333
Query: 346 PAVSKQPK-TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395
            + S   K   +  H   V +   SPDG+ +++A+ D+++K W    G  V
Sbjct: 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 104/278 (37%), Gaps = 60/278 (21%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY---ALRTG 298
           V  VKW  DG  +  G  +  + +++      +R + GH   V  L+ +        R+G
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSG 196
Query: 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-----------RLVSGSDDFTMFLWEPA 347
           A  H            + A  +   ++G++ E           +L SG +D  + +W+ A
Sbjct: 197 AIHH---------HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD-A 246
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASA--SFDKSIKLWNGTTGKFVAVFRGHVGP 404
            S  PK   T H   V  V + P     +A+   + DK I  WN  TG  V         
Sbjct: 247 RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV--------- 297
Query: 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS--GSKDSTLKVWDIRTQK 462
                                VD    ++   WS  S+ ++S  G  D+ L +W   +  
Sbjct: 298 -------------------NTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338
Query: 463 LKQ--DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           L +  D+P H   V     SPDG  +++   D  LK W
Sbjct: 339 LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 375 VASASFDKSIKLWNGTTGKFVAVFR------------GHVGPVYQIRFEL----IYCFRY 418
           V + + ++++ +WN  +G   A+               H G    +        IY    
Sbjct: 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165
Query: 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAV 477
            +    +      +   SW  +  +L SGS+   +   D+R    +   L GH+ EV  +
Sbjct: 166 QTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223
Query: 478 DWSPDGEKVASGGKDRVLKLW 498
            W  DG ++ASGG D V+++W
Sbjct: 224 AWRSDGLQLASGGNDNVVQIW 244

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 117/290 (40%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
           E + SVA+  +G  LA G+    V+LWD+  Q  +   T H   V  ++W++    L SG
Sbjct: 68  EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSG 125
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
           S++G +   D +  +     LSGH + + G+ W P       R   S   D    +W  +
Sbjct: 126 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 180
Query: 229 LRKC----VICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
             +     +   + H  AV  V W      V+ T  G+ D  I++W    G  +  +  H
Sbjct: 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
              V S+  S  Y                                    + L+SG     
Sbjct: 241 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 263
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
             + +W+ P ++K  +  + GH   V  +  SPDG  VASA+ D++++LW
Sbjct: 264 NQLVIWKYPTMAKVAE--LKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 106/271 (39%), Gaps = 44/271 (16%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
           ++ V W  +G  +  G+    +++W+  Q K +R +  H   V SL+ ++ Y L +G+  
Sbjct: 70  ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 128
Query: 302 -HTGKQYSSPEEMKKAALERYNKIKGN---APE--RLVSGSDDFTMFLWEPAVSKQ---P 352
            H         E   A L  +++       AP+   L SG +D  + +W  A  +    P
Sbjct: 129 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 188
Query: 353 KTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409
               T HQ  V  V + P   +       + D+ I++WN  +G  ++    H        
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-------- 240
Query: 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIRTQKLKQDL 467
                                C  L  WS   + L+SG     + L +W   T     +L
Sbjct: 241 ------------------SQVCSIL--WSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 280
Query: 468 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
            GH   V ++  SPDG  VAS   D  L+LW
Sbjct: 281 KGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 42/190 (22%)
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLW--NGTTGKFVAV---- 397
           EP+   QP  R+ GHQ+    + ++P+   ++ SAS D +I LW  N T  +   +    
Sbjct: 166 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 225
Query: 398 -FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS--------------------------C 430
            F GH   V  + + L++     S F  V D                             
Sbjct: 226 IFTGHTAVVEDVAWHLLH----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281
Query: 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKV-AS 488
           C+S   +S    +L +GS D T+ +WD+R  KLK      H DE+F V WSP  E + AS
Sbjct: 282 CLSFNPYS--EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 489 GGKDRVLKLW 498
            G DR L +W
Sbjct: 340 SGTDRRLHVW 349

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 42/190 (22%)
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLW--NGTTGKFVAV---- 397
           EP+   QP  R+ GHQ+    + ++P+   ++ SAS D +I LW  N T  +   +    
Sbjct: 168 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 227
Query: 398 -FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS--------------------------C 430
            F GH   V  + + L++     S F  V D                             
Sbjct: 228 IFTGHTAVVEDVAWHLLH----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 283
Query: 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKV-AS 488
           C+S   +S    +L +GS D T+ +WD+R  KLK      H DE+F V WSP  E + AS
Sbjct: 284 CLSFNPYS--EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 489 GGKDRVLKLW 498
            G DR L +W
Sbjct: 342 SGTDRRLHVW 351

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 42/190 (22%)
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLW--NGTTGKFVAV---- 397
           EP+   QP  R+ GHQ+    + ++P+   ++ SAS D +I LW  N T  +   +    
Sbjct: 170 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 229
Query: 398 -FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS--------------------------C 430
            F GH   V  + + L++     S F  V D                             
Sbjct: 230 IFTGHTAVVEDVAWHLLH----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 285
Query: 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKV-AS 488
           C+S   +S    +L +GS D T+ +WD+R  KLK      H DE+F V WSP  E + AS
Sbjct: 286 CLSFNPYS--EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 489 GGKDRVLKLW 498
            G DR L +W
Sbjct: 344 SGTDRRLHVW 353

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 38/188 (20%)
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTT----GKFV---A 396
           +P+    P  R+ GHQ+    + ++P+    + SAS D +I LW+ +     GK V    
Sbjct: 162 DPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 221
Query: 397 VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM---------SLYSWSADSR----- 442
           +F GH   V  + + L++     S F  V D    M         S  S S D+      
Sbjct: 222 IFTGHTAVVEDVSWHLLH----ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVN 277
Query: 443 ----------LLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKV-ASGG 490
                     +L +GS D T+ +WD+R  KLK      H DE+F V WSP  E + AS G
Sbjct: 278 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 337
Query: 491 KDRVLKLW 498
            DR L +W
Sbjct: 338 TDRRLNVW 345

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 163/445 (36%), Gaps = 62/445 (13%)
Query: 83  SIVYQPQAVFRI-------------RPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGD 129
           S+ ++P   FRI              P  +  +T   HT+ V SV ++PDG   AS  GD
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211
Query: 130 TTVRLWD--LNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
            T+ L++    T+T +F     K   H   V  + WS DG  + S S    ++ W+  T 
Sbjct: 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271
Query: 183 K-----PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS 237
           K     P G  +   +    GI W         +  VS S +G     +  L        
Sbjct: 272 KVEKTIPVGTRIEDQQ---LGIIWTK-------QALVSISANGFINFVNPELGSIDQVRY 321
Query: 238 GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYAL 295
           GH  A+T +    DG  +++   +  I  W+ + G   R     H   +  +  +++  L
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355
            T ++D   K   +      ++    NK+        VS   D  +      ++     +
Sbjct: 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441
Query: 356 MTGHQQLVNH--VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413
           +T      N   V  S D Q+VA    D  + ++   +G  V+  +  V P         
Sbjct: 442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK-LSGASVSEVKTIVHPAEITSV--- 497
Query: 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE 473
             F     F    D S  +  YS + +  L  + S       W   T K           
Sbjct: 498 -AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS-------WTFHTAK----------- 538
Query: 474 VFAVDWSPDGEKVASGGKDRVLKLW 498
           V  V WSPD  ++A+G  D  + +W
Sbjct: 539 VACVSWSPDNVRLATGSLDNSVIVW 563

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 26/160 (16%)
Query: 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-VASASFDKSIKLWNGTTGKFVAVFR 399
           +FL++   S      +TG  + +N V F P   + + S S D ++ ++ G   KF + F 
Sbjct: 131 VFLFDTGTSNG---NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG 187
Query: 400 GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLY-SWSADSRLLLSGSKDSTLKVWDI 458
            H   V+ +R+        P             SL+ S   D  ++L    D T K    
Sbjct: 188 EHTKFVHSVRYN-------PDG-----------SLFASTGGDGTIVLYNGVDGT-KTGVF 228
Query: 459 RTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
               LK     H+  VF + WSPDG K+AS   D+ +K+W
Sbjct: 229 EDDSLKN--VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 114/274 (41%), Gaps = 54/274 (19%)
Query: 247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306
           ++GG G + TG  +C IK+    +    R +  + H + +   S++  +    FD+T K 
Sbjct: 106 EFGGFGSV-TGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLV----FDYT-KH 159
Query: 307 YSSPE---EMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWE----PAVSK-- 350
            + P+   E       R ++ +G       N    L+S SDD T+ LW+    P   K  
Sbjct: 160 PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV 219
Query: 351 QPKTRMTGHQQLVNHV-YFSPDGQWVASASFDKSIKLWN---GTTGKFVAVFRGHVGPVY 406
             K   TGH  +V  V +         S + D+ + +W+    TT K   +   H   V 
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEV- 278
Query: 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-Q 465
                                   C+S   +S    +L +GS D T+ +WD+R  KLK  
Sbjct: 279 -----------------------NCLSFNPYS--EFILATGSADKTVALWDLRNLKLKLH 313
Query: 466 DLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 498
               H DE+F V WSP  E + AS G DR L +W
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 8/194 (4%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
           + GH   V  +A S +     S S D T+RLWDL T T   +  GH++ V  +A+S D +
Sbjct: 72  LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 164 HLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVHLNAP-----CRRFVSAS 217
            ++S     E++ W+     K S      H  W++ + + P+  +A         F S  
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE 276
            DG  ++W+ + +        H   V  +    +G  I TG +D  + +W+       + 
Sbjct: 192 WDGRLKVWNTNFQ-IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
Query: 277 LKGHGHWVNSLALS 290
               G  +N +A +
Sbjct: 251 EFDAGSTINQIAFN 264

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 34/200 (17%)
Query: 332 LVSGSDDFTMFLWEPAVSKQ------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
           L+SGS D T+ +W+    +Q      P   +TGH   V+ +  S +  +  S+S+DK+++
Sbjct: 42  LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIRF-----------------------ELIYCFRYPSN- 421
           LW+  TG     F GH   VY + F                       E  +      N 
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 422 ---FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVD 478
                CV       S       +    S   D  LKVW+   Q ++     H   V  + 
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-IRYTFKAHESNVNHLS 220
Query: 479 WSPDGEKVASGGKDRVLKLW 498
            SP+G+ +A+GGKD+ L +W
Sbjct: 221 ISPNGKYIATGGKDKKLLIW 240

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 113/274 (41%), Gaps = 54/274 (19%)
Query: 247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306
           ++GG G + TG  +C IK+    +    R    + H + +   S++  +    FD+T K 
Sbjct: 106 EFGGFGSV-TGKIECEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLV----FDYT-KH 159
Query: 307 YSSPE---EMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWE----PAVSK-- 350
            + P+   E       R ++ +G       N    L+S SDD T+ LW+    P   K  
Sbjct: 160 PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV 219
Query: 351 QPKTRMTGHQQLVNHV-YFSPDGQWVASASFDKSIKLWN---GTTGKFVAVFRGHVGPVY 406
             K   TGH  +V  V +         S + D+ + +W+    TT K   +   H   V 
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEV- 278
Query: 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-Q 465
                                   C+S   +S    +L +GS D T+ +WD+R  KLK  
Sbjct: 279 -----------------------NCLSFNPYS--EFILATGSADKTVALWDLRNLKLKLH 313
Query: 466 DLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 498
               H DE+F V WSP  E + AS G DR L +W
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 11/212 (5%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL- 165
           H + V +V+    G Q  SGS D  +++WDL  Q  +     H   V C+A S     + 
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWI-TGISWEPVHLNAPCRRFVSASKDGDARI 224
           +S S+   +  WD +  KP+         ++ T ++W P         FV   ++G   +
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV----FVFGDENGTVSL 241
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG--SQDCTIKVWETTQGKLIRELKGHGH 282
            D     CV+  + H+  VT + +    V +    S+DC++ V +++  +L R  + H  
Sbjct: 242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRD 300
Query: 283 WVNSLALS--TEYALRTGAFDHTGKQYSSPEE 312
           +V     S      L T  +DH    +  P E
Sbjct: 301 FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 22/163 (13%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFE---- 411
           GHQ+ V  V +SP G ++ASASFD +  +W      F  V    GH   V  + +     
Sbjct: 59  GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 412 -LIYCFRYPSNFYCVVD----MSCCMSLYS---------WSADSRLLLSGSKDSTLKVWD 457
            L  C R  S +   VD      C   L S         W     LL S S D T+K++ 
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 458 IRTQK--LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
                      L GH   V+++ + P G+++AS   DR +++W
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 20/211 (9%)
Query: 77  SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
           S +  +SI  + ++  R   ++   A I GH   V  VA+S DG  LA+ S D +V +W+
Sbjct: 77  SFDSTVSIWAKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Query: 137 LNTQTPMFKCTG----HKNWVLCIAWSADGKHLVSGSKAGELQCW-DPQTGKPSGNPLSG 191
            +     ++C      H   V  + W      L S S    ++ W D          L+G
Sbjct: 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG 195
Query: 192 HKKWITGISWEP-VHLNAPCRRFVSASKDGDARIW-----DVSLRKCVICLS----GHTL 241
           H+    G  W           R  S S D   R+W     D   ++  +C +     H  
Sbjct: 196 HE----GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251
Query: 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGK 272
            V  V WG +G+I +   D  + V+E   G+
Sbjct: 252 QVYNVAWGFNGLIASVGADGVLAVYEEVDGE 282

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 39/205 (19%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRM------TGHQQLVNHVYFSPDGQWVASASFDKSIK 385
           L +GS D T+ +W    S      M       GH+  V  V +S DG ++A+ S DKS+ 
Sbjct: 73  LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVW 132
Query: 386 LW----NGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV--------DMSCCMS 433
           +W    +G   + ++V + H   V  + +         S++   V        D  C   
Sbjct: 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV 192
Query: 434 LYS-----WSADSR------LLLSGSKDSTLKVW--------DIRTQKLKQDLPG-HADE 473
           L       WS+D         L SGS DST++VW        D +    +  LP  H  +
Sbjct: 193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ 252
Query: 474 VFAVDWSPDGEKVASGGKDRVLKLW 498
           V+ V W  +G  +AS G D VL ++
Sbjct: 253 VYNVAWGFNG-LIASVGADGVLAVY 276

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 19/222 (8%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN---TQTPM--FKCTGHKNWVLCIAWSAD 161
           H E V +V  S   R + +G G   V++WD++    ++P+    C    N++       D
Sbjct: 50  HGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 162 GKHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L+ G +A  L  WD     P     L+        ++  P       +   S   DG
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDG 163
Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG 279
           +  +WD+  +  V    GHT   +C+    DG  ++TG  D T++ W+  +G+ +++   
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--- 220
Query: 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
             H   S   S  Y   TG +   G + S+ E +     ++Y
Sbjct: 221 --HDFTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKY 259

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 438 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497
           S DS++  S   D  + VWD+  Q L +   GH D    +D S DG K+ +GG D  ++ 
Sbjct: 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209
Query: 498 W 498
           W
Sbjct: 210 W 210

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 35/247 (14%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKC-------------TGHKN 151
           H   ++SV ++ DG  + S   +    LW++ + T M  F+              +G  +
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
             + + W  D K ++ G K G +  +      P+G  L GH   I+      +  N   +
Sbjct: 208 LGVDVEWVDDDKFVIPGPK-GAIFVYQITEKTPTG-KLIGHHGPIS-----VLEFNDTNK 260
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG 271
             +SAS DG  RIW         C  GH+ ++    W GD  + + S D ++++W   Q 
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN 320
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
            L+           +L++     +  G     G++Y+         +  Y+  K N+  R
Sbjct: 321 TLL-----------ALSIVDGVPIFAGRISQDGQKYAVA--FMDGQVNVYDLKKLNSKSR 367
Query: 332 LVSGSDD 338
            + G+ D
Sbjct: 368 SLYGNRD 374

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 132/345 (38%), Gaps = 51/345 (14%)
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC 210
           N V C+AWS DG  +V+G + GEL+ W+ +TG    N L+ H+  I  + W     N   
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALL-NVLNFHRAPIVSVKW-----NKDG 161
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI----YTGSQDCTIKV- 265
              +S   +    +W+V        +SG  +    +K  G   I    ++G     + V 
Sbjct: 162 THIISMDVENVTILWNV--------ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE 213
Query: 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
           W      +I   KG             +  +      TGK       +        NK+ 
Sbjct: 214 WVDDDKFVIPGPKG-----------AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL- 261
Query: 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
                 L+S SDD T+ +W    +   +    GH Q +    +  D + V S S D S++
Sbjct: 262 ------LLSASDDGTLRIWHGG-NGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVR 313
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS---WSADSR 442
           LW+      +A+      P++  R             Y V  M   +++Y     ++ SR
Sbjct: 314 LWSLKQNTLLALSIVDGVPIFAGRIS------QDGQKYAVAFMDGQVNVYDLKKLNSKSR 367
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA 487
            L  G++D  L    I      Q    + D +F + W+  G K++
Sbjct: 368 SLY-GNRDGILNPLPIPLYASYQSSQDN-DYIFDLSWNCAGNKIS 410

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 25/188 (13%)
Query: 100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL----------------NTQTP 142
           CS  + GH + +L+V++SP     LA+ S D+ V+LWD+                 +Q  
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
               T H   V  + +++DG HL++      ++ W+   G+   N L  + K +   S +
Sbjct: 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE---NTLVNYGK-VCNNSKK 293
Query: 203 PVHLNAPC---RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
            +     C     FV         ++ V   + +  L GH   V C  +  +   +Y+GS
Sbjct: 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353
Query: 259 QDCTIKVW 266
           +DC I  W
Sbjct: 354 RDCNILAW 361

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQ---DLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496
           D  LLLS SKD  L++W+I+T  L      + GH DEV + D+   GEK+ S G D  LK
Sbjct: 163 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 222
Query: 497 LW 498
           LW
Sbjct: 223 LW 224

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQ---DLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496
           D  LLLS SKD  L++W+I+T  L      + GH DEV + D+   GEK+ S G D  LK
Sbjct: 126 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 185
Query: 497 LW 498
           LW
Sbjct: 186 LW 187

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQ---DLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496
           D  LLLS SKD  L++W+I+T  L      + GH DEV + D+   GEK+ S G D  LK
Sbjct: 122 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 181
Query: 497 LW 498
           LW
Sbjct: 182 LW 183

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQ---DLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496
           D  LLLS SKD  L++W+I+T  L      + GH DEV + D+   GEK+ S G D  LK
Sbjct: 127 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 186
Query: 497 LW 498
           LW
Sbjct: 187 LW 188

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQ---DLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496
           D  LLLS SKD  L++W+I+T  L      + GH DEV + D+   GEK+ S G D  LK
Sbjct: 126 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 185
Query: 497 LW 498
           LW
Sbjct: 186 LW 187

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G++LA+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
              + +         I +  H + V    W    +                TG  D  +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 96/257 (37%), Gaps = 51/257 (19%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWET 268
           RRF+  + +GD ++ D +          H   +T +K+   G+ +I + SQD  +K+W  
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSV 168
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
             G   R L GH   V  +A+                            ++R        
Sbjct: 169 KDGSNPRTLIGHRATVTDIAI----------------------------IDR-------- 192
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
              ++S S D T+ LWE        T   +   H  + +   F    + +   S  K   
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIR--FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443
           L  GT GK+V    GHV  V  +   F      + PS F C      C SL     ++  
Sbjct: 253 LEFGTYGKYVIA--GHVSGVITVHNVFSKEQTIQLPSKFTC-----SCNSLTVDGNNANY 305
Query: 444 LLSGSKDSTLKVWDIRT 460
           + +G ++  L  WD+R+
Sbjct: 306 IYAGYENGMLAQWDLRS 322

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 96/257 (37%), Gaps = 51/257 (19%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWET 268
           RRF+  + +GD ++ D +          H   +T +K+   G+ +I + SQD  +K+W  
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSV 165
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
             G   R L GH   V  +A+                            ++R        
Sbjct: 166 KDGSNPRTLIGHRATVTDIAI----------------------------IDR-------- 189
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
              ++S S D T+ LWE        T   +   H  + +   F    + +   S  K   
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 249
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIR--FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443
           L  GT GK+V    GHV  V  +   F      + PS F C      C SL     ++  
Sbjct: 250 LEFGTYGKYVIA--GHVSGVITVHNVFSKEQTIQLPSKFTC-----SCNSLTVDGNNANY 302
Query: 444 LLSGSKDSTLKVWDIRT 460
           + +G ++  L  WD+R+
Sbjct: 303 IYAGYENGMLAQWDLRS 319

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G++LA+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 9   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 69  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 125
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
              + +         I +  H + V    W    +                TG  D  +K
Sbjct: 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 185
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 186 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 130/332 (39%), Gaps = 53/332 (15%)
Query: 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW--DVSLRKCVIC 235
           DP TG      L GH             +     +  S S+DG  R+W  D      V+ 
Sbjct: 3   DPFTGYQLSATLKGHD------QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVY 56
Query: 236 LSGHTLAVTCVKWGGDGVIYTGSQDCTIK---VWETTQGKLIRELKGHGHWVNSLALSTE 292
                L   C     + +++ G +D  I    ++ T+    +  L GH   V SL+    
Sbjct: 57  TGQGFLNSVCYDSEKELLLF-GGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG 115
Query: 293 YALRTGAFDHTGKQYSSPEEMKKAALERYN------KIKGNAPERLVSGSDDFTMFLWEP 346
             + +G++D T K +     +    L+ +N      K+   +  + ++ S D T+ LW+ 
Sbjct: 116 VVI-SGSWDKTAKVWKEGSLVYN--LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172
Query: 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406
              K  KT    H  +V H+    DG ++ S S D  IKL +  TG  +  + GH     
Sbjct: 173 --DKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHE---- 225
Query: 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD 466
                 +YC +   N     D+  C                 +D T+++W      LKQ 
Sbjct: 226 ----SFVYCIKLLPNG----DIVSC----------------GEDRTVRIWSKENGSLKQV 261
Query: 467 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           +   A  +++VD   +G+ +  G  D +++++
Sbjct: 262 ITLPAISIWSVDCXSNGDIIV-GSSDNLVRIF 292

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 13/219 (5%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV 166
           H + V +++   DG Q  SG  D +V++WDL+ +  +     H + V C+A +  GK  +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA-ACPGKDTI 196
Query: 167 --SGSKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
             S  + G +  WD +  KP+            T ++W P   +     F    + G+  
Sbjct: 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT----FACGDETGNVS 252
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
           + ++         + H+  +T + +       + + S+DCT+ V +    ++ R+L  H 
Sbjct: 253 LVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-HR 311
Query: 282 HWVNSLALS--TEYALRTGAFDHTGKQYSSPEEMKKAAL 318
            +V  +A S        T  +DH    +  P E +   L
Sbjct: 312 DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENL 350

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G+++A+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 7   AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 67  GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPM--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
              + +         I +  H + V    W    +                TG  D  +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G++LA+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 7   AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
              + +         I +  H + V    W    +                TG  D  +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 125/312 (40%), Gaps = 74/312 (23%)
Query: 190 SGHKKWITGISWEPV--HLNAPCRR--FVSASKDGDARIWDVSLRKCVICLSGH-TLAVT 244
           S  + + T +S++P    +  PC +  FV    DGD+++        V+  +GH +  VT
Sbjct: 15  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV------PPVVQFTGHGSSVVT 68
Query: 245 CVKWG---GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG--- 298
            VK+    G   + +G +   + VW  T  K    ++        + + +E+ +  G   
Sbjct: 69  TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE--------VNVKSEFQVLAGPIS 120
Query: 299 --AFDHTGKQYSSPEEMK------------------KAALERYNK--IKGNAPERLVSGS 336
             ++D  G++     E +                      +R N   +K + P R ++  
Sbjct: 121 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 180
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPD-GQWVASASFDKSIKLWNGTTGK 393
           DD ++  ++    K   +  T H+Q   V  V FSPD G++V +   D+ I  ++G +G+
Sbjct: 181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240
Query: 394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453
           F+        PV    F L                       SW  DS+   +   D+T+
Sbjct: 241 FLKYIEDDQEPVQGGIFAL-----------------------SW-LDSQKFATVGADATI 276
Query: 454 KVWDIRTQKLKQ 465
           +VWD+ T K  Q
Sbjct: 277 RVWDVTTSKCVQ 288

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 124/312 (39%), Gaps = 74/312 (23%)
Query: 190 SGHKKWITGISWEPV--HLNAPCRR--FVSASKDGDARIWDVSLRKCVICLSGH-TLAVT 244
           S  + + T +S++P    +  PC +  FV    DGD+++        V+  +GH +  VT
Sbjct: 15  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV------PPVVQFTGHGSSVVT 68
Query: 245 CVKWG---GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG--- 298
            VK+    G   + +G +   + VW  T  K    ++        + + +E+ +  G   
Sbjct: 69  TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE--------VNVKSEFQVLAGPIS 120
Query: 299 --AFDHTGKQYSSPEEMK------------------KAALERYNK--IKGNAPERLVSGS 336
             ++D  G++     E +                      +R N   +K + P R  +  
Sbjct: 121 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVG 180
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPD-GQWVASASFDKSIKLWNGTTGK 393
           DD ++  ++    K   +  T H+Q   V  V FSPD G++V +   D+ I  ++G +G+
Sbjct: 181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240
Query: 394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453
           F+        PV    F L                       SW  DS+   +   D+T+
Sbjct: 241 FLKYIEDDQEPVQGGIFAL-----------------------SW-LDSQKFATVGADATI 276
Query: 454 KVWDIRTQKLKQ 465
           +VWD+ T K  Q
Sbjct: 277 RVWDVTTSKCVQ 288

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 82/217 (37%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
            H E +        G++ A+ S D T++++++  +T       TGH+  V  + W+    
Sbjct: 7   AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
           G  L S S  G++  W  + G+ S   +   H   +  + W P H   P    + AS DG
Sbjct: 67  GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGP--XLLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
              + +         I +  H + V    W    +                TG  D  +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
           +W+         L   L+GH  WV  +A S    LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 25/204 (12%)
Query: 102 ATIAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLN--TQTPMF-------KCTGHKN 151
           A  + H+ +V +V F+      LASG  +  + +WD+N  T++P         +     +
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166
Query: 152 WVLCIAWSADGKHLVSGSKAGEL-QCWDPQTGKPS-----GNPLSGHKKWITGISWEPVH 205
            V+ +AW+    H+ + + +      WD +  K        +P SG K+ ++ + W P +
Sbjct: 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226
Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICL----SGHTLAVTCVKW--GGDGVIYTGSQ 259
                R   +   D D  I    LR     L     GH   +  + W    + ++ +  +
Sbjct: 227 ---STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283
Query: 260 DCTIKVWETTQGKLIRELKGHGHW 283
           D T+ +W     + + +    G+W
Sbjct: 284 DNTVLLWNPESAEQLSQFPARGNW 307

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 97  VNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWD-------LNTQTPMFKCTG 148
           V++    + GHT  VL +A+ P +   +ASGS D TV +W+       L  + P+    G
Sbjct: 70  VDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129
Query: 149 HKNWVLCIAWSADGKH-LVSGSKAGELQCWDPQTG 182
           H   V  +AW    ++ L+S      +  WD  TG
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTG 164

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 231 KCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELK 278
           K V  + GHT  V  + W    D VI +GS+DCT+ VWE   G L+  L+
Sbjct: 72  KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	500
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.71
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.69
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.67
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.67
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.65
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.64
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.63
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.58
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.57
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.51
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.51
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.49
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.48
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.47
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.45
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.45
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.43
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.41
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.36
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.34
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.33
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.29
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.28
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.26
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.26
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.25
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.22
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.21
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.2
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.18
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.14
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.14
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.11
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.08
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.06
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.05
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.04
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.04
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.04
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.04
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.03
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.03
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.96
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.96
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.95
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.94
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.88
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.8
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.66
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.65
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.61
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.59
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.57
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.57
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.53
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.49
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.48
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.45
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.43
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.4
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.36
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.34
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.28
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.23
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.22
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.2
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.14
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.13
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.1
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.07
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.06
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.03
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.96
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.93
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.89
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.88
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.61
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.55
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.44
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.41
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.4
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.39
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.19
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.16
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.15
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.05
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.04
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.95
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.8
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.76
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.7
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.51
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.39
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.27
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.23
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.13
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.89
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.8
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.8
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.75
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.64
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.6
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.3
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.07
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.03
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.97
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.86
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.8
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.41
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.12
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.1
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	93.97
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.83
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.69
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.62
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.05
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.0
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.98
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.4
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.76
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	91.7
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.05
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.44
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.23
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	89.94
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	89.58
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	88.71
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	88.58
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.44
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	88.25
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	87.99
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	87.95
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	87.32
3ott_A	758	Two-component system sensor histidine kinase; beta	86.21
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	83.82
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	83.66
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	83.53
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	83.24
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	81.33
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	80.56
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	80.13

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4e-51  Score=418.51  Aligned_cols=389  Identities=20%  Similarity=0.348  Sum_probs=304.7

Q ss_pred             eeEEEEEEeecce--------------EeEEecccccccccCCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCcee
Q 010816           79 EKVLSIVYQPQAV--------------FRIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPM  143 (500)
Q Consensus        79 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~  143 (500)
                      ..+..+.|.|...              ..++....+..++.||.+.|.+++|+|++. +|++|+.|++|++||..+++..
T Consensus       104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~  183 (611)
T 1nr0_A          104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK  183 (611)
T ss_dssp             SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred             CceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe
Confidence            4566677776532              223334455677899999999999999987 5999999999999999988888


Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccccc------CcccceEEEEeeeeecCCCCceEEEEe
Q 010816          144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVSAS  217 (500)
Q Consensus       144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~s~s  217 (500)
                      ..+.+|...|.+++|+|||++|++|+.|++|++||..+++.......      +|...|.+++|+|     ++.++++++
T Consensus       184 ~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~l~s~s  258 (611)
T 1nr0_A          184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-----DGTKIASAS  258 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-----TSSEEEEEE
T ss_pred             eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-----CCCEEEEEe
Confidence            88999999999999999999999999999999999988875433212      7999999999987     456899999


Q ss_pred             CCCcEEEEECCCCeEEE-------------------------------------------EecCccccEEEEEeCCCC-e
Q 010816          218 KDGDARIWDVSLRKCVI-------------------------------------------CLSGHTLAVTCVKWGGDG-V  253 (500)
Q Consensus       218 ~dg~v~iwd~~~~~~~~-------------------------------------------~~~~h~~~v~~~~~~~~~-~  253 (500)
                      .|++|++||+++++++.                                           .+.+|...|.+++|++++ .
T Consensus       259 ~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~  338 (611)
T 1nr0_A          259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT  338 (611)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE
Confidence            99999999998776543                                           345799999999999987 6


Q ss_pred             EEEEeCCCeEEEEeCCCCeeEEEe-ecCCceEEEEEecCcceeeeccccCCCCCCCC-----------------------
Q 010816          254 IYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSS-----------------------  309 (500)
Q Consensus       254 l~t~~~dg~i~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  309 (500)
                      |++++.|++|++||+.+++....+ ..|...|.+++++++..+..+..+.....+..                       
T Consensus       339 l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~  418 (611)
T 1nr0_A          339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA  418 (611)
T ss_dssp             EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence            889999999999999998877665 56888899988887665544443321110000                       


Q ss_pred             --HHH-HH------------HHHH------Hhhhh-hcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEE
Q 010816          310 --PEE-MK------------KAAL------ERYNK-IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY  367 (500)
Q Consensus       310 --~~~-~~------------~~~~------~~~~~-~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~  367 (500)
                        +.. ..            ....      ..... ...+.+..+++|+.|++|++||+...........+|...|++++
T Consensus       419 ~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~  498 (611)
T 1nr0_A          419 VSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA  498 (611)
T ss_dssp             ECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEE
T ss_pred             EeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEE
Confidence              000 00            0000      00000 11234678999999999999997543221122368999999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEeCCC-CceEEE--EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEE
Q 010816          368 FSPDGQWVASASFDKSIKLWNGTT-GKFVAV--FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL  444 (500)
Q Consensus       368 ~sp~g~~lasgs~Dg~i~lwd~~~-~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  444 (500)
                      |+|||++||+++.|++|++||+.+ ++++..  +.+|...|.++                           +|+|+|++|
T Consensus       499 fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v---------------------------~fspdg~~l  551 (611)
T 1nr0_A          499 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV---------------------------SWSPDNVRL  551 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE---------------------------EECTTSSEE
T ss_pred             ECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEE---------------------------EECCCCCEE
Confidence            999999999999999999999987 665543  34588888887                           679999999


Q ss_pred             EEEECCCcEEEEECCCcc-cc-ccccCc-ccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          445 LSGSKDSTLKVWDIRTQK-LK-QDLPGH-ADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       445 ~s~s~d~~v~iwd~~~~~-~~-~~~~~h-~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      |+|+.|++|+|||+.++. .. ..+.+| .+.|++++|+||++ |++++.|++|++|+.
T Consensus       552 asgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred             EEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence            999999999999998765 33 567789 89999999999998 999999999999973

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.5e-49  Score=405.13  Aligned_cols=392  Identities=21%  Similarity=0.300  Sum_probs=292.7

Q ss_pred             cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCCEEEEEeCC----C
Q 010816           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKA----G  172 (500)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d----~  172 (500)
                      ....++.||.+.|++++|+|+|++||+|+.|++|+|||+.++.  ....+.+|.++|.+++|+|+|++|++++.+    +
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  129 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence            3456788999999999999999999999999999999997543  345678999999999999999999998865    4


Q ss_pred             eEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC
Q 010816          173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG  252 (500)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  252 (500)
                      .|++||.  ++.. ..+.+|...|.+++|+|..    ..++++|+.|++|++||...+++...+.+|...|.+++|+|++
T Consensus       130 ~v~~wd~--~~~~-~~l~gh~~~v~~v~f~p~~----~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg  202 (611)
T 1nr0_A          130 HVFLFDT--GTSN-GNLTGQARAMNSVDFKPSR----PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG  202 (611)
T ss_dssp             EEEETTT--CCBC-BCCCCCSSCEEEEEECSSS----SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS
T ss_pred             EEEEeeC--CCCc-ceecCCCCCceEEEECCCC----CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC
Confidence            7888884  4333 3578999999999998842    1369999999999999999999999999999999999999987


Q ss_pred             -eEEEEeCCCeEEEEeCCCCeeEEEee-------cCCceEEEEEecCcce-eeeccccCCCCCCCCHHHHHHH------H
Q 010816          253 -VIYTGSQDCTIKVWETTQGKLIRELK-------GHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKA------A  317 (500)
Q Consensus       253 -~l~t~~~dg~i~lwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~  317 (500)
                       .|++|+.|++|++||..+++.+..+.       +|...|.+++++|+.. +.++..|.....+.........      .
T Consensus       203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~  282 (611)
T 1nr0_A          203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR  282 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence             58899999999999999999888874       7999999999998753 3444444332222100000000      0


Q ss_pred             HH-hhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 010816          318 LE-RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA  396 (500)
Q Consensus       318 ~~-~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~  396 (500)
                      .. ....+. ..+..+++++.|+++++||..... ....+.+|...|++++|+|+|++|++++.|++|++||+.++++..
T Consensus       283 ~~~~~~~~~-~~~~~l~s~s~d~~i~~~~~~~~~-~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          283 IEDQQLGII-WTKQALVSISANGFINFVNPELGS-IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR  360 (611)
T ss_dssp             GGGCEEEEE-ECSSCEEEEETTCCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ccceeEEEE-EcCCEEEEEeCCCcEEEEeCCCCC-cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence            00 000000 023457777788888888765432 344567999999999999999999999999999999999988766


Q ss_pred             EE-eCCcccEEEEEeeee--------------------------------------------------------------
Q 010816          397 VF-RGHVGPVYQIRFELI--------------------------------------------------------------  413 (500)
Q Consensus       397 ~~-~~h~~~v~~~~~~~~--------------------------------------------------------------  413 (500)
                      .+ .+|...+.++.+...                                                              
T Consensus       361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~  440 (611)
T 1nr0_A          361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG  440 (611)
T ss_dssp             CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred             ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence            55 456666666554100                                                              


Q ss_pred             -----------eeecC-CCC----------ceee-------------eeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          414 -----------YCFRY-PSN----------FYCV-------------VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       414 -----------~~~~~-~~~----------~~~~-------------~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                                 .+..+ |.+          ...+             ......+..++|+|+|++|++++.|++|++||+
T Consensus       441 ~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~  520 (611)
T 1nr0_A          441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV  520 (611)
T ss_dssp             EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred             ceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEc
Confidence                       00000 000          0000             011223455778888888888888888888888


Q ss_pred             CC-cccccc--ccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          459 RT-QKLKQD--LPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       459 ~~-~~~~~~--~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      .+ +++...  +.+|.+.|++++|+|||++|++||.|++|++|+
T Consensus       521 ~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~  564 (611)
T 1nr0_A          521 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  564 (611)
T ss_dssp             GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence            76 554443  345999999999999999999999999999997

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.3e-49  Score=385.58  Aligned_cols=308  Identities=29%  Similarity=0.453  Sum_probs=271.4

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      ....+.||.++|++++|+|++++||+|+.|++|+|||+.++.....+.+|.+.|.+++|+|++++|++|+.|++|++||+
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~  258 (500)
                      .+++... .+.+|...|.++.|.|     ++..+++|+.|++|++||++++.++..+.+|...|.++.|++++ .+++|+
T Consensus       180 ~~~~~~~-~~~~h~~~V~~v~~~p-----~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s  253 (410)
T 1vyh_C          180 QGFECIR-TMHGHDHNVSSVSIMP-----NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS  253 (410)
T ss_dssp             TSSCEEE-CCCCCSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeE-EEcCCCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence            8876543 5788999999999987     34689999999999999999999999999999999999999887 588999


Q ss_pred             CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      .|++|++||+.+++....+..|...|.+++++|+........                                      
T Consensus       254 ~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~--------------------------------------  295 (410)
T 1vyh_C          254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE--------------------------------------  295 (410)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGG--------------------------------------
T ss_pred             CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhh--------------------------------------
Confidence            999999999999999999999999999999887532100000                                      


Q ss_pred             CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY  418 (500)
Q Consensus       339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  418 (500)
                              ..         +.    ......++|.+|++|+.|+.|++||+.+++++..+.+|...|.++          
T Consensus       296 --------~~---------~~----~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v----------  344 (410)
T 1vyh_C          296 --------AT---------GS----ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV----------  344 (410)
T ss_dssp             --------CC---------SC----C-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE----------
T ss_pred             --------hc---------cc----cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEE----------
Confidence                    00         00    001123458899999999999999999999999999999999887          


Q ss_pred             CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                                       +|+|+|++|++|+.|++|++||+.+++.+..+.+|.+.|++++|+|++++|++|+.|++|++|
T Consensus       345 -----------------~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW  407 (410)
T 1vyh_C          345 -----------------LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  407 (410)
T ss_dssp             -----------------EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             -----------------EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence                             568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 010816          499 M  499 (500)
Q Consensus       499 ~  499 (500)
                      +
T Consensus       408 ~  408 (410)
T 1vyh_C          408 E  408 (410)
T ss_dssp             C
T ss_pred             e
Confidence            7

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.2e-48  Score=367.28  Aligned_cols=287  Identities=25%  Similarity=0.454  Sum_probs=254.7

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      ..++.||.+.|.+++|+|++++|++|+.|++|+|||+.++..+..+..|...|.+++|+|++++|++|+.|+.|++||+.
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~  127 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence            45678999999999999999999999999999999999999998899999999999999999999999999999999998


Q ss_pred             CCCc---ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEE
Q 010816          181 TGKP---SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT  256 (500)
Q Consensus       181 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t  256 (500)
                      ++..   ....+.+|...|.++.|.+.      ..+++++.|++|++||+++++++..+.+|...|.+++|++++ .+++
T Consensus       128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  201 (340)
T 1got_B          128 TREGNVRVSRELAGHTGYLSCCRFLDD------NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             TCSBSCEEEEEEECCSSCEEEEEEEET------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cCCCcceeEEEecCCCccEEEEEECCC------CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence            7642   22346789999999998762      369999999999999999999999999999999999999987 5889


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                      |+.|++|++||+++++....                                                            
T Consensus       202 g~~d~~v~~wd~~~~~~~~~------------------------------------------------------------  221 (340)
T 1got_B          202 GACDASAKLWDVREGMCRQT------------------------------------------------------------  221 (340)
T ss_dssp             EETTSCEEEEETTTCSEEEE------------------------------------------------------------
T ss_pred             EeCCCcEEEEECCCCeeEEE------------------------------------------------------------
Confidence            99999999999877543322                                                            


Q ss_pred             CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCC--cccEEEEEeeeee
Q 010816          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH--VGPVYQIRFELIY  414 (500)
Q Consensus       337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h--~~~v~~~~~~~~~  414 (500)
                                         +.+|...|++++|+|++++|++|+.||.|++||+++++.+..+..+  ...+.++      
T Consensus       222 -------------------~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~------  276 (340)
T 1got_B          222 -------------------FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV------  276 (340)
T ss_dssp             -------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE------
T ss_pred             -------------------EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE------
Confidence                               2356778999999999999999999999999999998877665422  2344444      


Q ss_pred             eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV  494 (500)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~  494 (500)
                                           +|+|+|++|++|+.|+.|++||+.+++....+.+|.+.|.+++|+|+|++|+|||.|++
T Consensus       277 ---------------------~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          277 ---------------------SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             ---------------------EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             ---------------------EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence                                 67999999999999999999999999998999999999999999999999999999999


Q ss_pred             EEEec
Q 010816          495 LKLWM  499 (500)
Q Consensus       495 v~iW~  499 (500)
                      |+||+
T Consensus       336 i~iWd  340 (340)
T 1got_B          336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.4e-48  Score=362.98  Aligned_cols=286  Identities=24%  Similarity=0.430  Sum_probs=255.0

Q ss_pred             ccccCCcccEEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCce--eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816          102 ATIAGHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~----~~~lat~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~  175 (500)
                      ..+.+|.+.|++++|+|+    +.+|+||+.|++|+|||+.++..  ...+.+|...|.+++|++++.++++++.|++|+
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~  105 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR  105 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            456799999999999985    67899999999999999987653  346789999999999999999999999999999


Q ss_pred             EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eE
Q 010816          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l  254 (500)
                      +||+.+++... .+..|...+.++.|+|     ++..+++|+.|+.|++||++.++....+..|...|.+++|++++ .|
T Consensus       106 lWd~~~~~~~~-~~~~~~~~~~~~~~sp-----dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          106 LWDLENGKQIK-SIDAGPVDAWTLAFSP-----DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL  179 (321)
T ss_dssp             EEETTTTEEEE-EEECCTTCCCCEEECT-----TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             EEECCCCCEEE-EEeCCCccEEEEEECC-----CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence            99999887644 3566777788888876     55789999999999999999999999999999999999999987 58


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (500)
Q Consensus       255 ~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (500)
                      ++|+.|+.|++||+++++.+..+                                                         
T Consensus       180 asg~~dg~i~iwd~~~~~~~~~~---------------------------------------------------------  202 (321)
T 3ow8_A          180 ASGAIDGIINIFDIATGKLLHTL---------------------------------------------------------  202 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEE---------------------------------------------------------
T ss_pred             EEEcCCCeEEEEECCCCcEEEEE---------------------------------------------------------
Confidence            89999999999999877654332                                                         


Q ss_pred             eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeee
Q 010816          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY  414 (500)
Q Consensus       335 ~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~  414 (500)
                                            .+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.++      
T Consensus       203 ----------------------~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~------  254 (321)
T 3ow8_A          203 ----------------------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV------  254 (321)
T ss_dssp             ----------------------CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEE------
T ss_pred             ----------------------cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEE------
Confidence                                  2455678899999999999999999999999999999999999999999887      


Q ss_pred             eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV  494 (500)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~  494 (500)
                                           +|+|++.+|++|+.|++|++||+++++++..+.+|.+.|++++|+|+|++|++++.|++
T Consensus       255 ---------------------~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~  313 (321)
T 3ow8_A          255 ---------------------AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE  313 (321)
T ss_dssp             ---------------------EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred             ---------------------EECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence                                 56999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEec
Q 010816          495 LKLWM  499 (500)
Q Consensus       495 v~iW~  499 (500)
                      |++|+
T Consensus       314 i~vwd  318 (321)
T 3ow8_A          314 IHIYD  318 (321)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.9e-47  Score=387.38  Aligned_cols=324  Identities=37%  Similarity=0.645  Sum_probs=290.2

Q ss_pred             cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      .+...+.+|...|.+++|+|++++|++++.|+.|++||.. ++.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus       253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~  331 (577)
T 2ymu_A          253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  331 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            4556788999999999999999999999999999999975 456677889999999999999999999999999999999


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEE
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~  257 (500)
                      ......  ..+.+|...+.+++|.|     ++..+++++.|+.+++||. +++.+..+.+|...|.+++|++++ .|+++
T Consensus       332 ~~~~~~--~~~~~~~~~v~~~~~s~-----~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~  403 (577)
T 2ymu_A          332 RNGQHL--QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA  403 (577)
T ss_dssp             TTSCEE--EEECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             CCCCee--EEEeCCCCCEEEEEECC-----CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEE
Confidence            865432  34678889999999876     4568999999999999995 567788889999999999999987 58899


Q ss_pred             eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      +.|+.|++||. +++.+..+..|...|.+++++|+                                    ...+++++.
T Consensus       404 ~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d------------------------------------~~~l~~~~~  446 (577)
T 2ymu_A          404 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------------------------------------DQTIASASD  446 (577)
T ss_dssp             ETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT------------------------------------SSEEEEEET
T ss_pred             eCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCC------------------------------------CCEEEEEcC
Confidence            99999999995 67888889999999999999875                                    357899999


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                      |++|++||..  ......+.+|...|.+++|+|++++||+++.|+.|++||. +++++..+.+|..+|.++         
T Consensus       447 d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l---------  514 (577)
T 2ymu_A          447 DKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV---------  514 (577)
T ss_dssp             TSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEE---------
T ss_pred             CCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEE---------
Confidence            9999999963  3445677899999999999999999999999999999995 788999999999999887         


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  497 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i  497 (500)
                                        +|+|+|++|++++.|+.|+|||. +++.+..+.+|.+.|++++|+|||++|+|+|.|++|++
T Consensus       515 ------------------~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~  575 (577)
T 2ymu_A          515 ------------------AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL  575 (577)
T ss_dssp             ------------------EECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             ------------------EEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence                              56999999999999999999996 67778889999999999999999999999999999999


Q ss_pred             ec
Q 010816          498 WM  499 (500)
Q Consensus       498 W~  499 (500)
                      |+
T Consensus       576 Wd  577 (577)
T 2ymu_A          576 WN  577 (577)
T ss_dssp             EC
T ss_pred             eC
Confidence            96

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.2e-47  Score=362.10  Aligned_cols=288  Identities=26%  Similarity=0.451  Sum_probs=252.4

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      ..++.||.+.|++++|+|++++||||+.|++|+|||..++.....+..|...|.+++|+|+|.+|++|+.|+.+++|++.
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~  136 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT  136 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence            35678999999999999999999999999999999999998888888999999999999999999999999999999986


Q ss_pred             CCCc-----ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC---C
Q 010816          181 TGKP-----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD---G  252 (500)
Q Consensus       181 ~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---~  252 (500)
                      ....     ....+.+|...|.++.|.|     +...+++++.|++|++||+++++++..+.+|...|.++.|+++   .
T Consensus       137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          137 FDKNENMAAKKKSVAMHTNYLSACSFTN-----SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             CCTTCCSGGGCEEEEECSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred             ccccccccccceeeeccCCcEEEEEEeC-----CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence            5421     1223567899999999976     3458999999999999999999999999999999999999763   4


Q ss_pred             eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (500)
Q Consensus       253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (500)
                      .|++|+.|++|++||+++++.+..                                                        
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~~~~~--------------------------------------------------------  235 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQCVQA--------------------------------------------------------  235 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEE--------------------------------------------------------
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEE--------------------------------------------------------
Confidence            789999999999999887654332                                                        


Q ss_pred             EEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCc--ccEEEEEe
Q 010816          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV--GPVYQIRF  410 (500)
Q Consensus       333 ~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~--~~v~~~~~  410 (500)
                                             +.+|...|++++|+|++.+|++|+.|++|++||+++++.+..+..+.  ..+.+   
T Consensus       236 -----------------------~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~---  289 (354)
T 2pbi_B          236 -----------------------FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS---  289 (354)
T ss_dssp             -----------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE---
T ss_pred             -----------------------ecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE---
Confidence                                   23567789999999999999999999999999999988776665432  23333   


Q ss_pred             eeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEe
Q 010816          411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG  490 (500)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~  490 (500)
                                              ++|+|+|++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|||++|++|+
T Consensus       290 ------------------------~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs  345 (354)
T 2pbi_B          290 ------------------------VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS  345 (354)
T ss_dssp             ------------------------EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred             ------------------------EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEc
Confidence                                    36799999999999999999999999998889999999999999999999999999


Q ss_pred             CCCcEEEec
Q 010816          491 KDRVLKLWM  499 (500)
Q Consensus       491 ~D~~v~iW~  499 (500)
                      .|++|++|+
T Consensus       346 ~D~~v~vW~  354 (354)
T 2pbi_B          346 WDHTLRVWA  354 (354)
T ss_dssp             TTSEEEEEC
T ss_pred             CCCCEEecC
Confidence            999999995

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.3e-46  Score=349.53  Aligned_cols=286  Identities=25%  Similarity=0.393  Sum_probs=250.7

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      ..++.+|.+.|.+++|+|++++||+|+.||+|+|||+.++..+..+.+|..+|.+++|+|++++|++|+.|++|++||+.
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~   85 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            34678999999999999999999999999999999999999988999999999999999999999999999999999876


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeC
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ  259 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~  259 (500)
                      +++.                                                +..+.+|...|.+++|++++ .|++|+.
T Consensus        86 ~~~~------------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~sgs~  117 (304)
T 2ynn_A           86 TGEK------------------------------------------------VVDFEAHPDYIRSIAVHPTKPYVLSGSD  117 (304)
T ss_dssp             TCCE------------------------------------------------EEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCcE------------------------------------------------EEEEeCCCCcEEEEEEcCCCCEEEEECC
Confidence            6532                                                22345788889999998876 6889999


Q ss_pred             CCeEEEEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          260 DCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       260 dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      |++|++||++++ .....+.+|...|.+++++|..                                   +..+++|+.|
T Consensus       118 D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~-----------------------------------~~~l~sgs~D  162 (304)
T 2ynn_A          118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD-----------------------------------PSTFASGCLD  162 (304)
T ss_dssp             TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTC-----------------------------------TTEEEEEETT
T ss_pred             CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCC-----------------------------------CCEEEEEeCC
Confidence            999999999877 4557788999999999998731                                   3579999999


Q ss_pred             CeEEEEcCCCCCCCceeeecccCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF  416 (500)
Q Consensus       339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp--~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  416 (500)
                      ++|++||+...........+|...+..++|+|  ++.+|++|+.|++|++||+++++++..+.+|...|..+        
T Consensus       163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~--------  234 (304)
T 2ynn_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA--------  234 (304)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--------
T ss_pred             CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEE--------
Confidence            99999998766555555567778899999987  77899999999999999999999999999999998877        


Q ss_pred             cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCC--EEEEEeCCCc
Q 010816          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE--KVASGGKDRV  494 (500)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~--~l~s~~~D~~  494 (500)
                                         +|+|++.+|++|+.||+|++||+++++..+.+..|...+++++|+|++.  ++++|+.|+.
T Consensus       235 -------------------~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~  295 (304)
T 2ynn_A          235 -------------------VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGF  295 (304)
T ss_dssp             -------------------EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEE
T ss_pred             -------------------EECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCce
Confidence                               5699999999999999999999999999999999999999999999875  5888887775


Q ss_pred             EE
Q 010816          495 LK  496 (500)
Q Consensus       495 v~  496 (500)
                      +.
T Consensus       296 ~~  297 (304)
T 2ynn_A          296 TV  297 (304)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2e-47  Score=368.28  Aligned_cols=298  Identities=24%  Similarity=0.460  Sum_probs=249.9

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      +..++.||.+.|++++|+|++++||+|+.|++|+|||+.++.....+.+|...|.+++|+|+|++|++|+.|+.+++||+
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            44578999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCC------cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-----cCccccEEEEEe
Q 010816          180 QTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-----SGHTLAVTCVKW  248 (500)
Q Consensus       180 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-----~~h~~~v~~~~~  248 (500)
                      .+..      .....+.+|...+.++.|.|.    ...++++|+.|++|++||+++++++..+     .+|...|.++.|
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~----~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~  213 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPD----QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI  213 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS----SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecC----CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence            7532      123357789999999988763    2347999999999999999999888776     578888888888


Q ss_pred             CC-C-CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816          249 GG-D-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (500)
Q Consensus       249 ~~-~-~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (500)
                      ++ + ..+++|+.|++|++||++..                                                       
T Consensus       214 ~~~~~~~l~sgs~D~~v~~wd~~~~-------------------------------------------------------  238 (380)
T 3iz6_a          214 NSLNANMFISGSCDTTVRLWDLRIT-------------------------------------------------------  238 (380)
T ss_dssp             CSSSCCEEEEEETTSCEEEEETTTT-------------------------------------------------------
T ss_pred             ecCCCCEEEEEECCCeEEEEECCCC-------------------------------------------------------
Confidence            65 3 36777888888888886531                                                       


Q ss_pred             CCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (500)
Q Consensus       327 ~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~  406 (500)
                                             ......+.+|...|++++|+|+|++|++|+.||+|++||+++++.+..+..+.... 
T Consensus       239 -----------------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~-  294 (380)
T 3iz6_a          239 -----------------------SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN-  294 (380)
T ss_dssp             -----------------------CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS-
T ss_pred             -----------------------CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc-
Confidence                                   11223345788889999999999999999999999999999999888776543210 


Q ss_pred             EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc----cCcccCEEEEEEcCC
Q 010816          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL----PGHADEVFAVDWSPD  482 (500)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~----~~h~~~V~~l~~s~d  482 (500)
                                         ......+..++|+|+|++|++|+.||.|++||+..++....+    .+|.+.|++++|+||
T Consensus       295 -------------------~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  355 (380)
T 3iz6_a          295 -------------------DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD  355 (380)
T ss_dssp             -------------------CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSS
T ss_pred             -------------------ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCC
Confidence                               000112345589999999999999999999999888776555    689999999999999


Q ss_pred             CCEEEEEeCCCcEEEec
Q 010816          483 GEKVASGGKDRVLKLWM  499 (500)
Q Consensus       483 g~~l~s~~~D~~v~iW~  499 (500)
                      |++|+|||.|++|++|+
T Consensus       356 g~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          356 GSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             SSEEEEECTTSCEEEEE
T ss_pred             CCEEEEeeCCCCEEEEe
Confidence            99999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.5e-46  Score=350.97  Aligned_cols=284  Identities=20%  Similarity=0.247  Sum_probs=235.5

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----------CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-----------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-----------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~  173 (500)
                      ..|...|.+++|+|||++|++++ |+++++||...           .........|...|.+++|+|++ .|++|+.||+
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~  104 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA  104 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence            35778899999999999999887 77888887321           11111223467789999999985 7889999999


Q ss_pred             EEEEeCCCCCccc---ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC
Q 010816          174 LQCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (500)
Q Consensus       174 i~~wd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~  250 (500)
                      |++||+++++...   ....+|...|.+++|+|     ++.++++|+.|++|++||+++++++..+.+|...|.++.|++
T Consensus       105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-----dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~  179 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLS-----SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP  179 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred             EEEEeccCCCceeEeeccccCCCCCEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence            9999999887543   23458999999999987     557899999999999999999999999999999999999998


Q ss_pred             CC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816          251 DG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (500)
Q Consensus       251 ~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (500)
                      ++  .+++++.|++|++||+++++....+..                                                 
T Consensus       180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------------------------------------------------  210 (344)
T 4gqb_B          180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGC-------------------------------------------------  210 (344)
T ss_dssp             SCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------------------------------------
T ss_pred             CCCCceeeeccccccccccccccceeeeeec-------------------------------------------------
Confidence            75  588999999999999988765443210                                                 


Q ss_pred             CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~  407 (500)
                                                  ..|...+.+++|+|+ +++||+|+.||.|++||+++++++..+.+|...|.+
T Consensus       211 ----------------------------~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~  262 (344)
T 4gqb_B          211 ----------------------------SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTG  262 (344)
T ss_dssp             -------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEE
T ss_pred             ----------------------------ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEE
Confidence                                        123345788999994 678999999999999999999999999999999988


Q ss_pred             EEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCE-
Q 010816          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK-  485 (500)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~-  485 (500)
                      +                           +|+|++ ++||+|+.|++|+|||++++++. .+.+|.+.|++++|+|+++. 
T Consensus       263 v---------------------------~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~l  314 (344)
T 4gqb_B          263 L---------------------------VFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSL  314 (344)
T ss_dssp             E---------------------------EECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTE
T ss_pred             E---------------------------EEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeE
Confidence            8                           568987 68999999999999999998765 46799999999999999874 


Q ss_pred             EEEEeCCCcEEEecC
Q 010816          486 VASGGKDRVLKLWMG  500 (500)
Q Consensus       486 l~s~~~D~~v~iW~~  500 (500)
                      |+|||.|++|++|+.
T Consensus       315 las~s~D~~v~~w~v  329 (344)
T 4gqb_B          315 LTTVGWDHQVVHHVV  329 (344)
T ss_dssp             EEEEETTSCEEEEEC
T ss_pred             EEEEcCCCeEEEEEC
Confidence            679999999999973

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-45  Score=349.69  Aligned_cols=291  Identities=25%  Similarity=0.491  Sum_probs=238.3

Q ss_pred             ccccccCCcc-cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee---EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816          100 CSATIAGHTE-AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (500)
Q Consensus       100 ~~~~~~gh~~-~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~  175 (500)
                      +..++.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++...   ....+|...|.+++|+|++++|++|+.|++++
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~   86 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC   86 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence            3456789988 9999999999999999999999999999877533   22368999999999999999999999999999


Q ss_pred             EEeCCCCCc-ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC---eEEEEecCccccEEEEEeCCC
Q 010816          176 CWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGD  251 (500)
Q Consensus       176 ~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~  251 (500)
                      +||..++.. ....+.+|...|.+++|+|     ++..|++|+.|++|++||++.+   .++..+.+|...|.++.|+++
T Consensus        87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           87 IWKKNQDDFECVTTLEGHENEVKSVAWAP-----SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             EEEECCC-EEEEEEECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred             EEEccCCCeEEEEEccCCCCCceEEEEeC-----CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence            999887642 2345789999999999987     4568999999999999999765   456778899999999999998


Q ss_pred             C-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816          252 G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (500)
Q Consensus       252 ~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (500)
                      + .|++|+.|++|++||..+++...                                                       
T Consensus       162 ~~~l~s~s~d~~i~~w~~~~~~~~~-------------------------------------------------------  186 (345)
T 3fm0_A          162 QELLASASYDDTVKLYREEEDDWVC-------------------------------------------------------  186 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEE-------------------------------------------------------
T ss_pred             CCEEEEEeCCCcEEEEEecCCCEEE-------------------------------------------------------
Confidence            6 68899999999999976543110                                                       


Q ss_pred             EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---------------ceE
Q 010816          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---------------KFV  395 (500)
Q Consensus       331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~---------------~~~  395 (500)
                                            ...+.+|...|.+++|+|+|++||+|+.|++|++||....               +++
T Consensus       187 ----------------------~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~  244 (345)
T 3fm0_A          187 ----------------------CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI  244 (345)
T ss_dssp             ----------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred             ----------------------EEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence                                  0123467888999999999999999999999999985321               223


Q ss_pred             EEEeC-CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc---------cc
Q 010816          396 AVFRG-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL---------KQ  465 (500)
Q Consensus       396 ~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~---------~~  465 (500)
                      ..+.+ |...|+++                           +|+|++..|++++.|+.|++|+......         ..
T Consensus       245 ~~~~~~h~~~v~~v---------------------------~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~  297 (345)
T 3fm0_A          245 CTLSGFHSRTIYDI---------------------------AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH  297 (345)
T ss_dssp             EEECSSCSSCEEEE---------------------------EECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred             EEecCCCCCcEEEE---------------------------EEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence            33333 45555544                           7899999999999999999999875431         12


Q ss_pred             cccCcccCEEEEEEcCCC-CEEEEEeCCCcEEEec
Q 010816          466 DLPGHADEVFAVDWSPDG-EKVASGGKDRVLKLWM  499 (500)
Q Consensus       466 ~~~~h~~~V~~l~~s~dg-~~l~s~~~D~~v~iW~  499 (500)
                      ...+|.+.|++++|+|++ ..|||||.||+|++|+
T Consensus       298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~  332 (345)
T 3fm0_A          298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK  332 (345)
T ss_dssp             ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence            346899999999999998 4999999999999997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.3e-44  Score=368.71  Aligned_cols=324  Identities=36%  Similarity=0.624  Sum_probs=287.5

Q ss_pred             cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      .+...+.+|.+.|.+++|+|++++|++++.|+.|++||.. ++.+..+.+|...|.+++|+|+++.|++++.|+.|++||
T Consensus       212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~  290 (577)
T 2ymu_A          212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN  290 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence            3456778999999999999999999999999999999964 566778889999999999999999999999999999999


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEE
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~  257 (500)
                      ... +. ...+.+|...|.+++|+|     ++..+++++.|+.|++||.... .+..+.+|...|.+++|++++ .++++
T Consensus       291 ~~~-~~-~~~~~~h~~~v~~~~~~~-----~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~  362 (577)
T 2ymu_A          291 RNG-QL-LQTLTGHSSSVWGVAFSP-----DGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASA  362 (577)
T ss_dssp             TTS-CE-EEEECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCC-cE-EEEEecCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            753 32 235678999999999876     4568999999999999998654 556788999999999999987 58889


Q ss_pred             eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      +.|+.|++||. +++.+..+..|...|.+++++++                                    +..+++++.
T Consensus       363 ~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d------------------------------------g~~l~~~~~  405 (577)
T 2ymu_A          363 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD------------------------------------GQTIASASD  405 (577)
T ss_dssp             ETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTT------------------------------------SSCEEEEET
T ss_pred             eCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCC------------------------------------CCEEEEEeC
Confidence            99999999995 67888889999999999999875                                    346899999


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                      |+.|++||..  ......+.+|...|.+++|+||+++|++++.|+.|++||. +++.+..+.+|..++.++         
T Consensus       406 d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~---------  473 (577)
T 2ymu_A          406 DKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV---------  473 (577)
T ss_dssp             TSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEE---------
T ss_pred             CCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEE---------
Confidence            9999999953  3445677899999999999999999999999999999996 678888899999998887         


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  497 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i  497 (500)
                                        +|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|||++|++++.|++|++
T Consensus       474 ------------------~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~l  534 (577)
T 2ymu_A          474 ------------------AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL  534 (577)
T ss_dssp             ------------------EECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             ------------------EEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEE
Confidence                              56999999999999999999995 67778889999999999999999999999999999999


Q ss_pred             ec
Q 010816          498 WM  499 (500)
Q Consensus       498 W~  499 (500)
                      |+
T Consensus       535 wd  536 (577)
T 2ymu_A          535 WN  536 (577)
T ss_dssp             EC
T ss_pred             Ee
Confidence            97

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.4e-45  Score=342.44  Aligned_cols=292  Identities=34%  Similarity=0.611  Sum_probs=256.4

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      ...++.||.+.|.+++|+|++++||+|+.|+.|+||++.+++....+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence            34567899999999999999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~  258 (500)
                      .+++... .+.+|...|.++.|.|     +...+++|+.|+.|++||+++++++..+..|..+|.++.|++++ .+++++
T Consensus        95 ~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
T 4ery_A           95 SSGKCLK-TLKGHSNYVFCCNFNP-----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  168 (312)
T ss_dssp             TTCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEE-EEcCCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence            9887543 4678999999999987     44689999999999999999999999999999999999999886 688999


Q ss_pred             CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      .|+.|++||+++++.+..+.                                                            
T Consensus       169 ~d~~i~~wd~~~~~~~~~~~------------------------------------------------------------  188 (312)
T 4ery_A          169 YDGLCRIWDTASGQCLKTLI------------------------------------------------------------  188 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEEC------------------------------------------------------------
T ss_pred             CCCcEEEEECCCCceeeEEe------------------------------------------------------------
Confidence            99999999998765443211                                                            


Q ss_pred             CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY  418 (500)
Q Consensus       339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  418 (500)
                                        ..+...+.+++|+|++++|++++.|+.|++||+.+++++..+.+|......+..        
T Consensus       189 ------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------  242 (312)
T 4ery_A          189 ------------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA--------  242 (312)
T ss_dssp             ------------------CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCE--------
T ss_pred             ------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEE--------
Confidence                              122345788999999999999999999999999999999999888764322110        


Q ss_pred             CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEe--CCCcEE
Q 010816          419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLK  496 (500)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~--~D~~v~  496 (500)
                                      ....+++.+|++|+.||.|++||+++++.+..+.+|.+.|.+++|+|+++.|++++  .|++|+
T Consensus       243 ----------------~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~  306 (312)
T 4ery_A          243 ----------------NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK  306 (312)
T ss_dssp             ----------------EEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEE
T ss_pred             ----------------EEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEE
Confidence                            01246789999999999999999999999999999999999999999999999997  699999


Q ss_pred             Eec
Q 010816          497 LWM  499 (500)
Q Consensus       497 iW~  499 (500)
                      +|+
T Consensus       307 ~W~  309 (312)
T 4ery_A          307 LWK  309 (312)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-45  Score=359.68  Aligned_cols=323  Identities=22%  Similarity=0.348  Sum_probs=282.1

Q ss_pred             CCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeC----CCCc------eeEEecC----------CCCCEEEEEEcCCCCE
Q 010816          106 GHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL----NTQT------PMFKCTG----------HKNWVLCIAWSADGKH  164 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~----~~~~------~~~~~~~----------h~~~v~~v~~s~~~~~  164 (500)
                      .|.+.|.+++|+|+++ +||+|+.|+.|++||+    .++.      ....+..          |.+.|.+++|+|++++
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            3558999999999999 9999999999999999    8777      3444443          6889999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcccc--
Q 010816          165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA--  242 (500)
Q Consensus       165 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~--  242 (500)
                      |++++.|+.|++|| .+++.. ..+.+|...|.++.|.|     ++..+++++.|+.|++||+.+++.+..+..+...  
T Consensus       123 l~~~~~dg~i~i~~-~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (425)
T 1r5m_A          123 IVTGVENGELRLWN-KTGALL-NVLNFHRAPIVSVKWNK-----DGTHIISMDVENVTILWNVISGTVMQHFELKETGGS  195 (425)
T ss_dssp             EEEEETTSCEEEEE-TTSCEE-EEECCCCSCEEEEEECT-----TSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred             EEEEeCCCeEEEEe-CCCCee-eeccCCCccEEEEEECC-----CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence            99999999999999 444433 35678999999999987     4568999999999999999999999888888776  


Q ss_pred             -------------EEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCC
Q 010816          243 -------------VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (500)
Q Consensus       243 -------------v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  309 (500)
                                   +.++.|++++.+++++.|+.|++||+.+++.+..+..|...|.+++++++                 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-----------------  258 (425)
T 1r5m_A          196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT-----------------  258 (425)
T ss_dssp             ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT-----------------
T ss_pred             ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC-----------------
Confidence                         88999999999999999999999999999998889899999999998875                 


Q ss_pred             HHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (500)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~  389 (500)
                                         +..+++++.|+.|++||.... .....+.+|...|.+++|+|++ +|++++.|+.|++||+
T Consensus       259 -------------------~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~  317 (425)
T 1r5m_A          259 -------------------NKLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSL  317 (425)
T ss_dssp             -------------------TTEEEEEETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred             -------------------CCEEEEEcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence                               347899999999999998654 3455667899999999999999 9999999999999999


Q ss_pred             CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc-------
Q 010816          390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK-------  462 (500)
Q Consensus       390 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~-------  462 (500)
                      .+++.+..+..|..++.++                           +|+|++++|++++.||.|++||+++++       
T Consensus       318 ~~~~~~~~~~~~~~~i~~~---------------------------~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~  370 (425)
T 1r5m_A          318 KQNTLLALSIVDGVPIFAG---------------------------RISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY  370 (425)
T ss_dssp             TTTEEEEEEECTTCCEEEE---------------------------EECTTSSEEEEEETTSCEEEEECHHHHC------
T ss_pred             CCCcEeEecccCCccEEEE---------------------------EEcCCCCEEEEEECCCeEEEEECCCCccceeeee
Confidence            9999999999999888877                           569999999999999999999999887       


Q ss_pred             -------------ccccccCccc--CEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          463 -------------LKQDLPGHAD--EVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       463 -------------~~~~~~~h~~--~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                                   .+..+.+|..  .|.+++|+|++++|++++.||.|++|+.
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          371 GNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             --------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             cccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence                         7888899976  9999999999999999999999999973

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.5e-45  Score=342.51  Aligned_cols=284  Identities=28%  Similarity=0.466  Sum_probs=239.1

Q ss_pred             cccccCCcccEEEEEEcCCC-CeEEEEeCCCcEEEEeCCC-----CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816          101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNT-----QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~-~~lat~~~d~~i~iwd~~~-----~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i  174 (500)
                      ..++.||.+.|.+++|+|++ ++|++|+.|++|++||+.+     +.++..+.+|...|.+++|+|++++|++|+.|++|
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v   89 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL   89 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence            34688999999999999965 8999999999999999864     23456788999999999999999999999999999


Q ss_pred             EEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--
Q 010816          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--  252 (500)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--  252 (500)
                      ++||+.+++... .+.+|...|.++.|.|     ++..+++|+.|++|++||++ +.++..+.+|...|.++.|.+..  
T Consensus        90 ~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           90 RLWDVATGETYQ-RFVGHKSDVMSVDIDK-----KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             EEEETTTTEEEE-EEECCSSCEEEEEECT-----TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred             EEEECCCCCeeE-EEccCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence            999999887543 5778999999999976     45689999999999999996 56777889999999999998743  


Q ss_pred             -----eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816          253 -----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (500)
Q Consensus       253 -----~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (500)
                           .+++++.|+.|++||+.+++..                                                     
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~-----------------------------------------------------  189 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIE-----------------------------------------------------  189 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEE-----------------------------------------------------
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhh-----------------------------------------------------
Confidence                 4777777777777776554322                                                     


Q ss_pred             CCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816          328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (500)
Q Consensus       328 ~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~  407 (500)
                                                ..+.+|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+..+ .++.+
T Consensus       190 --------------------------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~  242 (319)
T 3frx_A          190 --------------------------ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS  242 (319)
T ss_dssp             --------------------------EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEE
T ss_pred             --------------------------eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEE
Confidence                                      223467888999999999999999999999999999999998888754 45665


Q ss_pred             EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc--------cCcccCEEEEEE
Q 010816          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL--------PGHADEVFAVDW  479 (500)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~--------~~h~~~V~~l~~  479 (500)
                      +                           +|+|++.+|++++.++ +++|++..+.....+        ..|...+.+++|
T Consensus       243 ~---------------------------~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  294 (319)
T 3frx_A          243 L---------------------------AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW  294 (319)
T ss_dssp             E---------------------------EECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE
T ss_pred             E---------------------------EEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEE
Confidence            5                           6799999999888654 999999876554433        235668999999


Q ss_pred             cCCCCEEEEEeCCCcEEEec
Q 010816          480 SPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       480 s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +|||++|++|+.|++|++|+
T Consensus       295 spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          295 SADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             CTTSSEEEEEETTSCEEEEE
T ss_pred             CCCCCEEEEeecCceEEEEE
Confidence            99999999999999999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.2e-45  Score=350.52  Aligned_cols=312  Identities=20%  Similarity=0.326  Sum_probs=237.5

Q ss_pred             EEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCCcccc-
Q 010816          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK------AGELQCWDPQTGKPSGN-  187 (500)
Q Consensus       115 ~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~------d~~i~~wd~~~~~~~~~-  187 (500)
                      .+.+++.+ +.++.+.....|++....+    .+|+..|.+++|+|||++|++|+.      |+.|++|+..++..... 
T Consensus        12 d~g~~~~~-~~~~g~~~~~~w~~p~~~p----~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~   86 (357)
T 4g56_B           12 DLGTENLY-FQSNGSSKGSAWGRPVTAP----ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL   86 (357)
T ss_dssp             ---------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG
T ss_pred             CCCccceE-EecCCCccccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE
Confidence            44444544 4555677889999865433    479999999999999999999997      78899999887754322 


Q ss_pred             --cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE----EecCccccEEEEEeCCCC-eEEEEeCC
Q 010816          188 --PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI----CLSGHTLAVTCVKWGGDG-VIYTGSQD  260 (500)
Q Consensus       188 --~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~~-~l~t~~~d  260 (500)
                        ...+|...|.+++|.|.      ..+++++.||+|+|||+.++++..    ...+|...|.+++|++++ .|++|+.|
T Consensus        87 ~~~~~~~~~~V~~~~~s~d------~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d  160 (357)
T 4g56_B           87 CTAGVQTEAGVTDVAWVSE------KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD  160 (357)
T ss_dssp             CSEEEECSSCEEEEEEETT------TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ecccCCCCCCEEEEEEcCC------CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC
Confidence              23468888999999873      368889999999999998876543    345899999999999987 68899999


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      ++|++||+.+++.+..+..|...|.+++++++.                                   ...+++++.|++
T Consensus       161 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~-----------------------------------~~~~~s~~~dg~  205 (357)
T 4g56_B          161 FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGK-----------------------------------DTIFLSCGEDGR  205 (357)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTC-----------------------------------SSCEEEEETTSC
T ss_pred             CeEEEEECCCCcEEEEEcCCCCCEEEEEEccCC-----------------------------------CceeeeeccCCc
Confidence            999999999999999999999999999987642                                   235889999999


Q ss_pred             EEEEcCCCCCCCc-eeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816          341 MFLWEPAVSKQPK-TRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY  418 (500)
Q Consensus       341 v~~wd~~~~~~~~-~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  418 (500)
                      |++||+....... .....|...+.+++|+|+ +.+||+|+.|+.|++||+++++++..+.+|..+|.++          
T Consensus       206 v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l----------  275 (357)
T 4g56_B          206 ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL----------  275 (357)
T ss_dssp             EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE----------
T ss_pred             eEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE----------
Confidence            9999987654432 234567788999999997 5789999999999999999999999999999999887          


Q ss_pred             CCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcC-CCCEEEEEeCCCcEE
Q 010816          419 PSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLK  496 (500)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~-dg~~l~s~~~D~~v~  496 (500)
                                       +|+|++ ++||+|+.|++|+|||+++++++..+ +|.+.|++|+|+| |+++|+|||.|++|+
T Consensus       276 -----------------~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~  337 (357)
T 4g56_B          276 -----------------AYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVL  337 (357)
T ss_dssp             -----------------EECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             -----------------EEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence                             568887 68999999999999999999887665 7999999999998 799999999999999


Q ss_pred             EecC
Q 010816          497 LWMG  500 (500)
Q Consensus       497 iW~~  500 (500)
                      +|+.
T Consensus       338 iW~~  341 (357)
T 4g56_B          338 HHHL  341 (357)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9973

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-46  Score=363.81  Aligned_cols=327  Identities=16%  Similarity=0.275  Sum_probs=277.8

Q ss_pred             cccEEEEEEcCCCC-eEEEE----------eCCCcEEEEeCCCCce--eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816          108 TEAVLSVAFSPDGR-QLASG----------SGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (500)
Q Consensus       108 ~~~V~~~~~sp~~~-~lat~----------~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i  174 (500)
                      ...|.+++|+|+++ +||+|          +.|+.|+|||+.++..  ......|...|.+++|+|++++|++++.|+.|
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v   91 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL   91 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence            44678899999987 99999          8999999999987652  22223689999999999999999999999999


Q ss_pred             EEEeCCC---CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe------EEEE---ecCcccc
Q 010816          175 QCWDPQT---GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK------CVIC---LSGHTLA  242 (500)
Q Consensus       175 ~~wd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~------~~~~---~~~h~~~  242 (500)
                      ++||+.+   +......+.+|...|.++.|+|.    ....+++++.|+.|++||+.+++      ....   +.+|...
T Consensus        92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  167 (416)
T 2pm9_A           92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAK----QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE  167 (416)
T ss_dssp             EEECCSSTTSCCCEEEECCCSSSCCCEEEECSS----STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred             EEeecccccccccchhhccCCccceEEEEEcCC----CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence            9999987   23233457789999999999873    24689999999999999998876      3332   3678999


Q ss_pred             EEEEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecC------CceEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816          243 VTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGH------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (500)
Q Consensus       243 v~~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (500)
                      |.+++|+++  ..+++++.|+.|++||+++++.+..+..+      ...+.+++++++.                     
T Consensus       168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------  226 (416)
T 2pm9_A          168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN---------------------  226 (416)
T ss_dssp             CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC---------------------
T ss_pred             eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC---------------------
Confidence            999999987  37889999999999999999998888776      7789999988752                     


Q ss_pred             HHHHHhhhhhcCCCCcEEEEeeCCC---eEEEEcCCCCCCCceeee-cccCcEEEEEECC-CCCEEEEEeCCCcEEEEeC
Q 010816          315 KAALERYNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSP-DGQWVASASFDKSIKLWNG  389 (500)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~s~s~d~---~v~~wd~~~~~~~~~~~~-~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~  389 (500)
                                    ...+++++.|+   .|++||+.....+...+. +|...|.+++|+| ++++|++++.||.|++||+
T Consensus       227 --------------~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~  292 (416)
T 2pm9_A          227 --------------STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP  292 (416)
T ss_dssp             --------------TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred             --------------CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence                          24789999998   999999987656666777 8999999999999 9999999999999999999


Q ss_pred             CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCcccccccc
Q 010816          390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLP  468 (500)
Q Consensus       390 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~  468 (500)
                      .+++.+..+.+|...+.++                           +|+|++ .+|++++.|+.|++||+...+......
T Consensus       293 ~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~  345 (416)
T 2pm9_A          293 ESAEQLSQFPARGNWCFKT---------------------------KFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQ  345 (416)
T ss_dssp             SSCCEEEEEECSSSCCCCE---------------------------EECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-
T ss_pred             CCCccceeecCCCCceEEE---------------------------EECCCCCCEEEEEecCCcEEEEEccCCCCCcccc
Confidence            9999999999999887766                           679998 899999999999999998765432221


Q ss_pred             -----------------------------------CcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          469 -----------------------------------GHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       469 -----------------------------------~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                                                         .|...+.+++|+|||++|++++.|++|+||+.
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~  412 (416)
T 2pm9_A          346 ETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP  412 (416)
T ss_dssp             ---------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred             cccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence                                               16677889999999999999999999999973

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1e-43  Score=337.53  Aligned_cols=294  Identities=24%  Similarity=0.415  Sum_probs=229.8

Q ss_pred             cccccCCcccEEEEEE-----cC-CCCeEEEEeCCCcEEEEeCCCC-------ceeEEecCCCCCEEEEEEcCCCCEEEE
Q 010816          101 SATIAGHTEAVLSVAF-----SP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADGKHLVS  167 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~-----sp-~~~~lat~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~v~~s~~~~~l~s  167 (500)
                      ..++.||.+.|++++|     ++ ++++||||+.|++|+|||+.+.       .+...+.+|...|.+++|+|++.+|++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence            4567899999999999     77 8999999999999999998753       345678899999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---CccccEE
Q 010816          168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVT  244 (500)
Q Consensus       168 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---~h~~~v~  244 (500)
                      |+.|++|++||+++++... .+.+|...|.++.|+|     ++..+++++.|++|++||+... +.....   +|...|.
T Consensus        94 ~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp-----~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYK-RFVGHQSEVYSVAFSP-----DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS  166 (343)
T ss_dssp             EETTSEEEEEETTSSCEEE-EEECCCSCEEEEEECS-----STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred             EcCCCcEEEEECCCCcEEE-EEcCCCCcEEEEEECC-----CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence            9999999999999887643 4678999999999987     4568999999999999999743 333333   7888999


Q ss_pred             EEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816          245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (500)
Q Consensus       245 ~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (500)
                      ++.|++++...                ..               +.                                  
T Consensus       167 ~~~~~~~~~~~----------------~~---------------~~----------------------------------  181 (343)
T 2xzm_R          167 CVRYSPIMKSA----------------NK---------------VQ----------------------------------  181 (343)
T ss_dssp             EEEECCCCCSC----------------SC---------------CC----------------------------------
T ss_pred             eeeeccccccc----------------cc---------------cC----------------------------------
Confidence            99998864100                00               00                                  


Q ss_pred             cCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-CceEEEEeCCcc
Q 010816          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVG  403 (500)
Q Consensus       325 ~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~h~~  403 (500)
                        .....+++++.|++|++||..  ......+.+|...|.+++|+|+|++||+|+.||.|++||+.. ......+. +..
T Consensus       182 --~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~  256 (343)
T 2xzm_R          182 --PFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGS  256 (343)
T ss_dssp             --SSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSS
T ss_pred             --CCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCC
Confidence              001245566666666666621  222344568889999999999999999999999999999944 33333332 333


Q ss_pred             cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc--cc-----------cCc
Q 010816          404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DL-----------PGH  470 (500)
Q Consensus       404 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~--~~-----------~~h  470 (500)
                      .+.++                           +|+|++.+++++ .|+.|++||+.+++...  .+           .+|
T Consensus       257 ~v~~v---------------------------~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (343)
T 2xzm_R          257 TINQI---------------------------AFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK  308 (343)
T ss_dssp             CEEEE---------------------------EECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS
T ss_pred             cEEEE---------------------------EECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC
Confidence            45544                           679999888755 57789999998765433  22           278


Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          471 ADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       471 ~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ...|.+++|+|+|++|++|+.||+|++|+
T Consensus       309 ~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          309 NPQCTSLAWNALGKKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             CCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred             CCceEEEEECCCCCeEEEecCCceEEEEE
Confidence            88999999999999999999999999997

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.7e-43  Score=363.21  Aligned_cols=365  Identities=18%  Similarity=0.312  Sum_probs=298.6

Q ss_pred             cccccccccCCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCC---CEEEEEEcCC-CCEEEEEeCC
Q 010816           97 VNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSAD-GKHLVSGSKA  171 (500)
Q Consensus        97 ~~~~~~~~~gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~---~v~~v~~s~~-~~~l~s~~~d  171 (500)
                      .......+.+|.+.|.+++|+|+++ ++++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|+ +++|++++.|
T Consensus       149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (615)
T 1pgu_A          149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD  228 (615)
T ss_dssp             TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence            3445667889999999999999998 899999999999999999999999999999   9999999999 9999999999


Q ss_pred             CeEEEEeCCCCCccccccc---CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc----cccEE
Q 010816          172 GELQCWDPQTGKPSGNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH----TLAVT  244 (500)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h----~~~v~  244 (500)
                      +.|++||+.+++.......   +|...|.++.|.      ++..+++++.|+.|++||+++++++..+..+    ...+.
T Consensus       229 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  302 (615)
T 1pgu_A          229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL------DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV  302 (615)
T ss_dssp             CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES------SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE
T ss_pred             CeEEEEECCCCCEeEEecccccccCCceEEEEEc------CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCcee
Confidence            9999999998876654325   899999999985      3468999999999999999999998888776    46788


Q ss_pred             EEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCH--------------
Q 010816          245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP--------------  310 (500)
Q Consensus       245 ~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  310 (500)
                      ++.|..+..+++++.|+.|++||+.+++.+..+..|...|.++++ ++  +..+..+.....+...              
T Consensus       303 ~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~  379 (615)
T 1pgu_A          303 GVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP--LISGSYDGRIMEWSSSSMHQDHSNLIVSLD  379 (615)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT--TEEEETTSCEEETTTTEEECCCCSCEEEEE
T ss_pred             EEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC--cEEECCCCeEEEEEchhhcCcccCceEEEE
Confidence            888876678999999999999999999999999888888888888 55  3332222111100000              


Q ss_pred             ---HHHH-----HHHHHh---------------------------------------------------hhhhcCCCCcE
Q 010816          311 ---EEMK-----KAALER---------------------------------------------------YNKIKGNAPER  331 (500)
Q Consensus       311 ---~~~~-----~~~~~~---------------------------------------------------~~~~~~~~~~~  331 (500)
                         ....     ...+..                                                   ...+... +..
T Consensus       380 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  458 (615)
T 1pgu_A          380 NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS-QNY  458 (615)
T ss_dssp             CCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC-SSE
T ss_pred             ECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc-CCE
Confidence               0000     000000                                                   0000000 457


Q ss_pred             EEEeeC-CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC-CcccEEEEE
Q 010816          332 LVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQIR  409 (500)
Q Consensus       332 ~~s~s~-d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-h~~~v~~~~  409 (500)
                      +++++. |+.|++||..........+.+|...|.+++|+|+|++|++++.||.|++||+.+++.+..+.+ |..+|.++ 
T Consensus       459 l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~-  537 (615)
T 1pgu_A          459 VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI-  537 (615)
T ss_dssp             EEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEE-
T ss_pred             EEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEE-
Confidence            788888 899999987643221145677899999999999999999999999999999999999998888 99998887 


Q ss_pred             eeeeeeecCCCCceeeeeccccceeeEEcC----------CCCEEEEEECCCcEEEEECCCc-cccccccCcccCEEEEE
Q 010816          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSA----------DSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVD  478 (500)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----------~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h~~~V~~l~  478 (500)
                                                +|+|          ++++|++|+.|+.|++||+.++ +.+..+.+|.+.|++++
T Consensus       538 --------------------------~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~  591 (615)
T 1pgu_A          538 --------------------------SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL  591 (615)
T ss_dssp             --------------------------EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEE
T ss_pred             --------------------------EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEE
Confidence                                      5688          9999999999999999999987 77888999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEec
Q 010816          479 WSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       479 ~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |+|+++ |++++.|++|++|+
T Consensus       592 ~s~~~~-l~s~~~d~~v~iw~  611 (615)
T 1pgu_A          592 WETPST-LVSSGADACIKRWN  611 (615)
T ss_dssp             EEETTE-EEEEETTSCEEEEE
T ss_pred             EcCCCC-eEEecCCceEEEEe
Confidence            999999 99999999999997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.7e-44  Score=344.83  Aligned_cols=287  Identities=31%  Similarity=0.523  Sum_probs=242.5

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCC------------------CCEEEEEEcCCCCEEEE
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK------------------NWVLCIAWSADGKHLVS  167 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~------------------~~v~~v~~s~~~~~l~s  167 (500)
                      +|.+.|.+++|+|||++||+|+ |++++||++.++..+..+.+|.                  ..|.+++|+|+|++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999976 7899999999988877766553                  24999999999999999


Q ss_pred             EeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 010816          168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK  247 (500)
Q Consensus       168 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~  247 (500)
                      |+.|++|++||+.+++... .+.+|...|.++.|.|     ++..+++++.|++|++||++++++...+. +...+.+++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~p-----~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~  213 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFP-----SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVA  213 (393)
T ss_dssp             EETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred             EcCCCeEEEEECCCCcEEE-EEccCCCCEEEEEEcC-----CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEE
Confidence            9999999999999876543 5788999999999987     44689999999999999999999887765 456789999


Q ss_pred             eCC-CC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhc
Q 010816          248 WGG-DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK  325 (500)
Q Consensus       248 ~~~-~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (500)
                      |++ ++ .|++|+.|+.|++||+++++.+..+...                                             
T Consensus       214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~---------------------------------------------  248 (393)
T 1erj_A          214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE---------------------------------------------  248 (393)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----------------------------------------------
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc---------------------------------------------
Confidence            987 54 6889999999999999887655433210                                             


Q ss_pred             CCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC------------c
Q 010816          326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG------------K  393 (500)
Q Consensus       326 ~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~------------~  393 (500)
                                                 .....+|...|.+++|+|+|++|++|+.|+.|++||+.+.            .
T Consensus       249 ---------------------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~  301 (393)
T 1erj_A          249 ---------------------------NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT  301 (393)
T ss_dssp             -------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred             ---------------------------ccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence                                       0112368889999999999999999999999999998763            3


Q ss_pred             eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccC
Q 010816          394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE  473 (500)
Q Consensus       394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~  473 (500)
                      +...+.+|...|.++                           +|+|++.+|++|+.|+.|++||+++++.+..+.+|.+.
T Consensus       302 ~~~~~~~h~~~v~~~---------------------------~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~  354 (393)
T 1erj_A          302 CEVTYIGHKDFVLSV---------------------------ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS  354 (393)
T ss_dssp             EEEEEECCSSCEEEE---------------------------EECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ceEEEecccCcEEEE---------------------------EECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC
Confidence            455667777777666                           56899999999999999999999999999999999999


Q ss_pred             EEEEEEcC------CCCEEEEEeCCCcEEEec
Q 010816          474 VFAVDWSP------DGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       474 V~~l~~s~------dg~~l~s~~~D~~v~iW~  499 (500)
                      |.+++|++      ++++|+|||.|++|+||+
T Consensus       355 v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~  386 (393)
T 1erj_A          355 VISVAVANGSSLGPEYNVFATGSGDCKARIWK  386 (393)
T ss_dssp             EEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             EEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence            99999986      688999999999999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-44  Score=336.77  Aligned_cols=289  Identities=22%  Similarity=0.392  Sum_probs=226.7

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEe-cC-CCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKC-TG-HKNWVLCIAWSADGKHLVSGSKAGELQ  175 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~-~~-h~~~v~~v~~s~~~~~l~s~~~d~~i~  175 (500)
                      +..++.+|.++|++++|+|+  +||+|+.|++|+|||+.++.  ....+ .+ |...|.+++|+|++++|++|+.|++|+
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            34567899999999999998  99999999999999998753  33444 34 999999999999999999999999999


Q ss_pred             EEeCCCCC------cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC----CeEEEEecCccccEEE
Q 010816          176 CWDPQTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----RKCVICLSGHTLAVTC  245 (500)
Q Consensus       176 ~wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~----~~~~~~~~~h~~~v~~  245 (500)
                      +||...+.      .....+.+|...|.+++|+|     ++.+|++|+.|++|++||++.    .+++..+.+|...|.+
T Consensus        84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~  158 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-----DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH  158 (330)
T ss_dssp             EEEC-------CCCEEEEEEC----CEEEEEECT-----TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred             EEEcccCcCccccceeEEEEcCCCCcEEEEEECC-----CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence            99986432      11234678999999999987     456899999999999999943    3577888999999999


Q ss_pred             EEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816          246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (500)
Q Consensus       246 ~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (500)
                      +.|+|++ .|++|+.|++|++||..++...                                                  
T Consensus       159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~--------------------------------------------------  188 (330)
T 2hes_X          159 VIWHPSEALLASSSYDDTVRIWKDYDDDWE--------------------------------------------------  188 (330)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEEEETTEEE--------------------------------------------------
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCCee--------------------------------------------------
Confidence            9999876 6889999999999986543100                                                  


Q ss_pred             cCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCCC--------ce
Q 010816          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTG--------KF  394 (500)
Q Consensus       325 ~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~--g~~lasgs~Dg~i~lwd~~~~--------~~  394 (500)
                                                 ....+.+|...|.+++|+|+  +.+|++|+.|++|++||+.++        .+
T Consensus       189 ---------------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~  241 (330)
T 2hes_X          189 ---------------------------CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC  241 (330)
T ss_dssp             ---------------------------EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred             ---------------------------EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence                                       01224477888999999998  678999999999999998654        33


Q ss_pred             EEEEeC-CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc--cc-ccccCc
Q 010816          395 VAVFRG-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK--LK-QDLPGH  470 (500)
Q Consensus       395 ~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~--~~-~~~~~h  470 (500)
                      ...+.+ |...|+++                           +|++++ +|++++.||.|++||..+++  .. ..+.+|
T Consensus       242 ~~~~~~~h~~~v~~v---------------------------~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h  293 (330)
T 2hes_X          242 EAILPDVHKRQVYNV---------------------------AWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH  293 (330)
T ss_dssp             EEECCSCCSSCEEEE---------------------------EECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred             eeecccccccceEEE---------------------------EEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence            444554 77777776                           567655 89999999999999987763  22 234678


Q ss_pred             cc-CEEEEEEcC--CCCEEEEEeCCCcEEEecC
Q 010816          471 AD-EVFAVDWSP--DGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       471 ~~-~V~~l~~s~--dg~~l~s~~~D~~v~iW~~  500 (500)
                      .. .|.+++|+|  +++.|++||.|++|+||+.
T Consensus       294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             TTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred             ccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence            87 899999999  7899999999999999973

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-43  Score=370.32  Aligned_cols=360  Identities=14%  Similarity=0.146  Sum_probs=274.4

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~  184 (500)
                      ..|..+|.+++|+| +++|++++.|++|+|||+.+++++..+. |...|.+++|+|++++|++|+.||+|++||+.+++.
T Consensus        55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~  132 (902)
T 2oaj_A           55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL  132 (902)
T ss_dssp             CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred             cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            35888999999999 8899999999999999999998887775 778999999999999999999999999999988764


Q ss_pred             cc----------ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc---------------
Q 010816          185 SG----------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH---------------  239 (500)
Q Consensus       185 ~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h---------------  239 (500)
                      ..          ..+.+|...|.+++|+|..    ...+++|+.|+.| +||+++++++..+.+|               
T Consensus       133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~----~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~  207 (902)
T 2oaj_A          133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRD----IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTN  207 (902)
T ss_dssp             EEEEECCHHHHHTCSSSCCCCCCEEEEETTE----EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTT
T ss_pred             ccceeccccccccccccCCCCeEEEEEccCC----CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccc
Confidence            21          2357799999999999842    2478999999999 9999999998888766               


Q ss_pred             ---cccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEE--ee---c-------------CCceEEEEEecC----c-
Q 010816          240 ---TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE--LK---G-------------HGHWVNSLALST----E-  292 (500)
Q Consensus       240 ---~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~--~~---~-------------~~~~v~~~~~~~----~-  292 (500)
                         ...|.+++|++++ .|++|+.|++|++||+++++.+..  +.   .             +..+|.++++++    + 
T Consensus       208 ~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~  287 (902)
T 2oaj_A          208 EKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEY  287 (902)
T ss_dssp             SCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTE
T ss_pred             cccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCC
Confidence               4779999999987 589999999999999999887653  21   1             234788888842    2 


Q ss_pred             -ceeeeccccCCC---------------------------------C-CC--------------C--CHH----------
Q 010816          293 -YALRTGAFDHTG---------------------------------K-QY--------------S--SPE----------  311 (500)
Q Consensus       293 -~~~~~~~~~~~~---------------------------------~-~~--------------~--~~~----------  311 (500)
                       ..+..++.+...                                 . .+              .  .+.          
T Consensus       288 ~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l  367 (902)
T 2oaj_A          288 TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLI  367 (902)
T ss_dssp             EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEE
T ss_pred             CEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeE
Confidence             112222111000                                 0 00              0  000          


Q ss_pred             -----------------------------------------------HHHHHHHHh----hhhhc-----------CCCC
Q 010816          312 -----------------------------------------------EMKKAALER----YNKIK-----------GNAP  329 (500)
Q Consensus       312 -----------------------------------------------~~~~~~~~~----~~~~~-----------~~~~  329 (500)
                                                                     .........    ...+.           ...+
T Consensus       368 ~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg  447 (902)
T 2oaj_A          368 LLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG  447 (902)
T ss_dssp             EEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE
T ss_pred             EEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC
Confidence                                                           000000000    00000           1124


Q ss_pred             cEEEEeeCCCeEEEEcCCCCCCCc-eee---------ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc------
Q 010816          330 ERLVSGSDDFTMFLWEPAVSKQPK-TRM---------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK------  393 (500)
Q Consensus       330 ~~~~s~s~d~~v~~wd~~~~~~~~-~~~---------~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~------  393 (500)
                      ..+++|+.|++|++||+....... ..+         .+|...|.+|+|+|||++||+|+.||+|+|||+.+++      
T Consensus       448 ~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~  527 (902)
T 2oaj_A          448 TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVEN  527 (902)
T ss_dssp             EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-----
T ss_pred             cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccc
Confidence            579999999999999986553211 111         1788999999999999999999999999999988763      


Q ss_pred             ---------------------------------------eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecccccee
Q 010816          394 ---------------------------------------FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL  434 (500)
Q Consensus       394 ---------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (500)
                                                             ++.++.+|.++|+++                          
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sv--------------------------  581 (902)
T 2oaj_A          528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAI--------------------------  581 (902)
T ss_dssp             ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEE--------------------------
T ss_pred             cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEE--------------------------
Confidence                                                   244555566666555                          


Q ss_pred             eEEcCCCCEEEEEECCCcEEEEECCCcccc-----cccc-CcccCEEEEEEc-----CCC---CEEEEEeCCCcEEEec
Q 010816          435 YSWSADSRLLLSGSKDSTLKVWDIRTQKLK-----QDLP-GHADEVFAVDWS-----PDG---EKVASGGKDRVLKLWM  499 (500)
Q Consensus       435 ~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~-----~~~~-~h~~~V~~l~~s-----~dg---~~l~s~~~D~~v~iW~  499 (500)
                       +|||+| +||+|+.|++|+|||++++..+     ..+. +|.+.|++|+|+     |||   ++|++|+.|++|++|+
T Consensus       582 -afSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          582 -NNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK  658 (902)
T ss_dssp             -EECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred             -EecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence             679999 9999999999999999887654     3454 899999999999     886   8999999999999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.1e-43  Score=336.78  Aligned_cols=287  Identities=17%  Similarity=0.240  Sum_probs=235.6

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeC------CCcEEEEeCCCCcee----EEecCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSG------DTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSADGKHLVSGSKAGEL  174 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~------d~~i~iwd~~~~~~~----~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i  174 (500)
                      .+|.+.|.+++|+|||++||+|+.      |++|++|+..++.+.    ....+|...|.+++|+|++. +++++.||+|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence            479999999999999999999997      788999998765432    33457899999999999975 5677889999


Q ss_pred             EEEeCCCCCccc---ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC
Q 010816          175 QCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD  251 (500)
Q Consensus       175 ~~wd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  251 (500)
                      ++||+.+++...   ....+|...|.+++|+|     ++.++++|+.|+.|++||+++++++..+.+|...|.+++|+++
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~  192 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-----DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG  192 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECS-----SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence            999998876432   23457999999999987     4568999999999999999999999999999999999999876


Q ss_pred             C--eEEEEeCCCeEEEEeCCCCeeEEEee--cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816          252 G--VIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (500)
Q Consensus       252 ~--~l~t~~~dg~i~lwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (500)
                      +  .+++++.|++|++||+++++....+.  .+...+.+++++|+.                                  
T Consensus       193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~----------------------------------  238 (357)
T 4g56_B          193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK----------------------------------  238 (357)
T ss_dssp             CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS----------------------------------
T ss_pred             CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcc----------------------------------
Confidence            4  68999999999999999988766543  456678888887642                                  


Q ss_pred             CCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816          328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (500)
Q Consensus       328 ~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~  406 (500)
                       +..+++|+.|+.|++||+.... ....+.+|...|++++|+|++ ++||+|+.|++|+|||+++++++..+ +|.+.|+
T Consensus       239 -~~~la~g~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~  315 (357)
T 4g56_B          239 -DDTFACGDETGNVSLVNIKNPD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVT  315 (357)
T ss_dssp             -TTEEEEEESSSCEEEEESSCGG-GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEE
T ss_pred             -cceEEEeecccceeEEECCCCc-EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEE
Confidence             3478999999999999986543 455678999999999999987 68999999999999999999887654 7999998


Q ss_pred             EEEeeeeeeecCCCCceeeeeccccceeeEEcC-CCCEEEEEECCCcEEEEECCCc
Q 010816          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVWDIRTQ  461 (500)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iwd~~~~  461 (500)
                      ++                           +|+| ++.+|++|+.|++|++|++.+.
T Consensus       316 ~v---------------------------afsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          316 GV---------------------------AWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EE---------------------------EECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EE---------------------------EEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            87                           5688 7999999999999999998654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.1e-43  Score=330.30  Aligned_cols=320  Identities=16%  Similarity=0.275  Sum_probs=275.1

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~  186 (500)
                      |.++|.+++|+|||++++++..++.+.+|+...........+|...|.+++|+|++++|++++ |+.|++||+.+++...
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            467899999999999999998888777776665555555568999999999999999999999 9999999998775432


Q ss_pred             ccc----cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe--EEEEecCccccEEEEEeCCCC-eEEEEeC
Q 010816          187 NPL----SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGDG-VIYTGSQ  259 (500)
Q Consensus       187 ~~~----~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~-~l~t~~~  259 (500)
                      ...    .+|...+.++.|.|     ++..+++++.|+.|++||+..++  ....+.+|...|.++.|++++ .+++++.
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  161 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLP-----DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS  161 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECT-----TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             eeecccccCCCCcEEEEEEcC-----CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence            221    27889999999987     45689999999999999999877  667788999999999999876 6889999


Q ss_pred             CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (500)
Q Consensus       260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~  339 (500)
                      |+.|++||+++++.+..+..|...+.+++++++                                    +..+++++.|+
T Consensus       162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~~l~~~~~dg  205 (337)
T 1gxr_A          162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISND------------------------------------GTKLWTGGLDN  205 (337)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTT------------------------------------SSEEEEEETTS
T ss_pred             CCcEEEEeCCCCceeeeeecccCceEEEEECCC------------------------------------CCEEEEEecCC
Confidence            999999999999999999999999999998875                                    35789999999


Q ss_pred             eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCC
Q 010816          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP  419 (500)
Q Consensus       340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  419 (500)
                      .|++||+.....  .....+...+.+++|+|++++|++++.|+.|++||+.+++.. .+..|..++.++           
T Consensus       206 ~i~~~d~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~-----------  271 (337)
T 1gxr_A          206 TVRSWDLREGRQ--LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL-----------  271 (337)
T ss_dssp             EEEEEETTTTEE--EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE-----------
T ss_pred             cEEEEECCCCce--EeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEE-----------
Confidence            999999865432  223357788999999999999999999999999999988754 567788888777           


Q ss_pred             CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                                      +|+|++++|++++.||.|++||+.+++.... ..|...|.+++|+|++++|++++.|+.|++|+
T Consensus       272 ----------------~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          272 ----------------KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             ----------------EECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ----------------EECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence                            5699999999999999999999999887644 35788999999999999999999999999997

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7.6e-42  Score=336.81  Aligned_cols=317  Identities=27%  Similarity=0.515  Sum_probs=278.8

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      ...+.||.+.|.. ++++++++|++|+.||+|++||+.+++.+..+.+|...|.++.|+  +++|++|+.||+|++||+.
T Consensus       111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence            3467899997643 355679999999999999999999999999999999999999997  5699999999999999999


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCC
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD  260 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~d  260 (500)
                      +++... .+.+|...|.++.|.+       ..+++|+.||.|++||+++++++..+.+|...|.++.|. ...+++|+.|
T Consensus       188 ~~~~~~-~~~~h~~~v~~~~~~~-------~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d  258 (445)
T 2ovr_B          188 TGECIH-TLYGHTSTVRCMHLHE-------KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-GRRVVSGAYD  258 (445)
T ss_dssp             TTEEEE-EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-SSCEEEEETT
T ss_pred             cCcEEE-EECCCCCcEEEEEecC-------CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC-CCEEEEEcCC
Confidence            887543 4678999999999853       479999999999999999999999999999999999994 4579999999


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      |.|++||+++++.+..+..|...|.++.+.                                      +..+++++.|+.
T Consensus       259 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------------------------------------~~~l~~~~~d~~  300 (445)
T 2ovr_B          259 FMVKVWDPETETCLHTLQGHTNRVYSLQFD--------------------------------------GIHVVSGSLDTS  300 (445)
T ss_dssp             SCEEEEEGGGTEEEEEECCCSSCEEEEEEC--------------------------------------SSEEEEEETTSC
T ss_pred             CEEEEEECCCCcEeEEecCCCCceEEEEEC--------------------------------------CCEEEEEeCCCe
Confidence            999999999999999999999999888763                                      246899999999


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC---CcccEEEEEeeeeeeec
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQIRFELIYCFR  417 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~  417 (500)
                      |++||+... .....+.+|...+.++.+  ++++|++|+.||.|++||+.+++.+..+.+   |..+|.++         
T Consensus       301 i~i~d~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~---------  368 (445)
T 2ovr_B          301 IRVWDVETG-NCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL---------  368 (445)
T ss_dssp             EEEEETTTC-CEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE---------
T ss_pred             EEEEECCCC-CEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE---------
Confidence            999998654 345567789999998887  467999999999999999999999999887   77778776         


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc-----cCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-----PGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                                        +|  ++++|++|+.||.|++||+.+++.+..+     .+|.+.|++++|+|++..|++|+.|
T Consensus       369 ------------------~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~d  428 (445)
T 2ovr_B          369 ------------------QF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN  428 (445)
T ss_dssp             ------------------EE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred             ------------------EE--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccC
Confidence                              33  4689999999999999999999887766     5688899999999999999999999


Q ss_pred             Cc----EEEec
Q 010816          493 RV----LKLWM  499 (500)
Q Consensus       493 ~~----v~iW~  499 (500)
                      |+    |.+|+
T Consensus       429 g~~~~~l~v~d  439 (445)
T 2ovr_B          429 GTEETKLLVLD  439 (445)
T ss_dssp             SSSCCEEEEEE
T ss_pred             CCCccEEEEEE
Confidence            98    99987

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-43  Score=369.68  Aligned_cols=188  Identities=12%  Similarity=0.117  Sum_probs=158.1

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~  184 (500)
                      .||.+.|++++|+|++++||+|+.||+|+||+..+......+ .|..+|.+++|+| |++|++++.|++|++||+.+++.
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~   91 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV   91 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence            489999999999999999999999999999999877665544 4888999999999 88999999999999999998876


Q ss_pred             ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEE-----------EEecCccccEEEEEeCCC--
Q 010816          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-----------ICLSGHTLAVTCVKWGGD--  251 (500)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~-----------~~~~~h~~~v~~~~~~~~--  251 (500)
                      ... + .|...|.++.|+|     ++..+++|+.||.|++||++++++.           ..+.+|..+|.+++|+|+  
T Consensus        92 ~~~-~-~~~~~V~~v~~sp-----~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~  164 (902)
T 2oaj_A           92 LTT-V-FVPGKITSIDTDA-----SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI  164 (902)
T ss_dssp             EEE-E-ECSSCEEEEECCT-----TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred             EEE-E-cCCCCEEEEEECC-----CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence            543 2 2667899999876     4568999999999999999988764           234679999999999996  


Q ss_pred             CeEEEEeCCCeEEEEeCCCCeeEEEeecC------------------CceEEEEEecCcce-eeeccccC
Q 010816          252 GVIYTGSQDCTIKVWETTQGKLIRELKGH------------------GHWVNSLALSTEYA-LRTGAFDH  302 (500)
Q Consensus       252 ~~l~t~~~dg~i~lwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~-~~~~~~~~  302 (500)
                      +.+++|+.|+.| +||+++++.++.+..|                  ...|.+++++|+.. +.++..|.
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg  233 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN  233 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC
T ss_pred             CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC
Confidence            478999999999 9999999988887655                  46799999998753 34444443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.5e-42  Score=381.17  Aligned_cols=356  Identities=22%  Similarity=0.357  Sum_probs=299.7

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      ..+.+|.+.|++++|+|++++||+|+.||+|+|||+.++..+..+.+|...|.+++|+|++++|++++.|++|++||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCC
Q 010816          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD  260 (500)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~d  260 (500)
                      ++... .+.+|...|.++.|.|..   +...+++|+.|+.|++||+.+++++..+.+|...|.++.|++++ .+++++.|
T Consensus       689 ~~~~~-~~~~~~~~v~~~~~~~~~---~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  764 (1249)
T 3sfz_A          689 GKLVH-TYDEHSEQVNCCHFTNKS---NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD  764 (1249)
T ss_dssp             CCEEE-EEECCSSCEEEEEECSSS---SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred             CceEE-EEcCCCCcEEEEEEecCC---CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence            87654 467899999999998732   33578999999999999999999999999999999999999987 68899999


Q ss_pred             CeEEEEeCCCCeeEEEeecCCc-------------eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816          261 CTIKVWETTQGKLIRELKGHGH-------------WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~-------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (500)
                      |.|++||+.+++....+.....             .+.++++++                                    
T Consensus       765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------------------------------------  808 (1249)
T 3sfz_A          765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA------------------------------------  808 (1249)
T ss_dssp             SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT------------------------------------
T ss_pred             CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC------------------------------------
Confidence            9999999998887766543221             122222222                                    


Q ss_pred             CCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816          328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (500)
Q Consensus       328 ~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~  407 (500)
                      .+..+++++ ++.+.+||............+|...|.+++|+|+++++++++.||.|++||..++..+..+.+|.+.|.+
T Consensus       809 dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~  887 (1249)
T 3sfz_A          809 DGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG  887 (1249)
T ss_dssp             TSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEE
Confidence            234566655 7899999987665555555689999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeee----eecCCCCceeeee-------------------------------------------------cccccee
Q 010816          408 IRFELIY----CFRYPSNFYCVVD-------------------------------------------------MSCCMSL  434 (500)
Q Consensus       408 ~~~~~~~----~~~~~~~~~~~~~-------------------------------------------------~~~~~~~  434 (500)
                      +.|..-.    +.. ..+...+.+                                                 ....+..
T Consensus       888 v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  966 (1249)
T 3sfz_A          888 VMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC  966 (1249)
T ss_dssp             EEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred             EEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence            9884210    000 000000110                                                 1123556


Q ss_pred             eEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          435 YSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       435 ~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ++|+|+++++++|+.||.|++||+.+++....+.+|...|.+++|+|+|++|++++.|++|++|+
T Consensus       967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A          967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp             EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred             EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            78999999999999999999999999999889999999999999999999999999999999997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.3e-42  Score=382.69  Aligned_cols=413  Identities=22%  Similarity=0.333  Sum_probs=324.1

Q ss_pred             eeEEEEEEeecc----------eEeEEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010816           79 EKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC  146 (500)
Q Consensus        79 ~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~  146 (500)
                      ..+..+.|.|..          ..+++..  ..+..++.+|.+.|.+++|+|++++||+|+.|++|+|||+.+++.+..+
T Consensus       616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  695 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY  695 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence            445666666543          2344443  2345678899999999999999999999999999999999999999999


Q ss_pred             cCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE
Q 010816          147 TGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (500)
Q Consensus       147 ~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i  224 (500)
                      .+|...|.+++|+|  ++.++++|+.|+.|++||+.+++... .+.+|...|.++.|+|     ++..+++++.||.|++
T Consensus       696 ~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~sp-----~~~~l~s~s~dg~v~v  769 (1249)
T 3sfz_A          696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN-TMFGHTNSVNHCRFSP-----DDELLASCSADGTLRL  769 (1249)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE-EECCCSSCEEEEEECS-----STTEEEEEESSSEEEE
T ss_pred             cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh-eecCCCCCEEEEEEec-----CCCEEEEEECCCeEEE
Confidence            99999999999999  45689999999999999999887653 4678999999999987     4568999999999999


Q ss_pred             EECCCCeEEEEe-------------------------------------------------------cCccccEEEEEeC
Q 010816          225 WDVSLRKCVICL-------------------------------------------------------SGHTLAVTCVKWG  249 (500)
Q Consensus       225 wd~~~~~~~~~~-------------------------------------------------------~~h~~~v~~~~~~  249 (500)
                      ||+.+++....+                                                       .+|...|.+++|+
T Consensus       770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s  849 (1249)
T 3sfz_A          770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS  849 (1249)
T ss_dssp             EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred             EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence            998776543322                                                       1677788899999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcce-eeeccccCCCCCCCCHHHHHHHHHH--------
Q 010816          250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKAALE--------  319 (500)
Q Consensus       250 ~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------  319 (500)
                      +++ .+++++.|+.|++||+.++..+..+.+|..+|.+++++++.. +.++..+.....+............        
T Consensus       850 p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~  929 (1249)
T 3sfz_A          850 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV  929 (1249)
T ss_dssp             SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEE
Confidence            876 588899999999999999999999999999999999998764 4444444443333211100000000        


Q ss_pred             ---------------------------------hh-hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEE
Q 010816          320 ---------------------------------RY-NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH  365 (500)
Q Consensus       320 ---------------------------------~~-~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~  365 (500)
                                                       .. .......+..+++|+.||.|++||.... .....+.+|...|.+
T Consensus       930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~-~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A          930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN-RVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp             EETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT-SCEEECCCCSSCCCC
T ss_pred             EcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC-ceeeecccCCCceEE
Confidence                                             00 0001234567899999999999998654 345567789999999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeee--------------eecCCCCceeeeecccc
Q 010816          366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY--------------CFRYPSNFYCVVDMSCC  431 (500)
Q Consensus       366 l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~~~~~~~~~~~~~~~~  431 (500)
                      ++|+|+|++|++++.||.|++||+.+++... +.+|...+.++.+..-.              .................
T Consensus      1009 l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 1087 (1249)
T 3sfz_A         1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT 1087 (1249)
T ss_dssp             EEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSC
T ss_pred             EEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCc
Confidence            9999999999999999999999999988764 56788889888764210              00000001111122344


Q ss_pred             ceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          432 MSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       432 ~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +..++|+|++++|++++.|++|++||+.+++....+.+|.+.|++++|+|||++|++++.||+|++|+
T Consensus      1088 v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A         1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp             CCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            66788999999999999999999999999999999999999999999999999999999999999997

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.2e-41  Score=321.05  Aligned_cols=286  Identities=27%  Similarity=0.497  Sum_probs=232.3

Q ss_pred             ccccccCCcccEEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCc-----eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 010816          100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~~~~-----~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~  173 (500)
                      +..+|.||++.|++|+|+|+ +++||||+.|++|+|||+.+..     +...+.+|...|.+++|+|++++|++++.|+.
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~  109 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT  109 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence            34578999999999999998 6899999999999999987643     45677899999999999999999999999999


Q ss_pred             EEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-EEEecCccccEEEEEeCCCC
Q 010816          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWGGDG  252 (500)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~  252 (500)
                      |++|+...+.... ....+...+....+.+     ....+++++.|+.+++||+..... .....+|...+.++.|++++
T Consensus       110 i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          110 LRLWDLTTGTTTR-RFVGHTKDVLSVAFSS-----DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             EEEEETTTTEEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred             ceEEeecccceee-eecCCCCceeEEEEee-----cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence            9999998765432 2334455555555544     446899999999999999976544 44467889999999997653


Q ss_pred             ---eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816          253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (500)
Q Consensus       253 ---~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (500)
                         .+++++.|+.|++||+++++.+..                                                     
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~-----------------------------------------------------  210 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTN-----------------------------------------------------  210 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEE-----------------------------------------------------
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeE-----------------------------------------------------
Confidence               578899999999999877654322                                                     


Q ss_pred             cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEE
Q 010816          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR  409 (500)
Q Consensus       330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~  409 (500)
                                                +.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.++. .+..+ 
T Consensus       211 --------------------------~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~v~~~-  262 (340)
T 4aow_A          211 --------------------------HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINAL-  262 (340)
T ss_dssp             --------------------------ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS-CEEEE-
T ss_pred             --------------------------ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc-eEEee-
Confidence                                      23567789999999999999999999999999999999888777653 45444 


Q ss_pred             eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc---------ccCcccCEEEEEEc
Q 010816          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD---------LPGHADEVFAVDWS  480 (500)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~---------~~~h~~~V~~l~~s  480 (500)
                                                .|+|++.++ +++.|+.|++||++++.....         ..+|...|++++|+
T Consensus       263 --------------------------~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  315 (340)
T 4aow_A          263 --------------------------CFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS  315 (340)
T ss_dssp             --------------------------EECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC
T ss_pred             --------------------------ecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC
Confidence                                      568877655 566799999999988665433         34688899999999


Q ss_pred             CCCCEEEEEeCCCcEEEec
Q 010816          481 PDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       481 ~dg~~l~s~~~D~~v~iW~  499 (500)
                      |||++|++|+.||+|+||+
T Consensus       316 ~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          316 ADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEe
Confidence            9999999999999999997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.9e-43  Score=342.62  Aligned_cols=341  Identities=18%  Similarity=0.202  Sum_probs=273.2

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      ..+++++|+|++++|++|+.|+.|++||+.++.....+..| ..+....|++++++|++|+.|+.|++||+.+++.. ..
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~  134 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR-EI  134 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE-EE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee-ee
Confidence            34557899999999999999999999999887665555555 44556678999999999999999999999877654 34


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEe
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE  267 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd  267 (500)
                      +.+|...|.++.|+|     ++..+++|+.|+.|++||+++++++..+.+|...|.+++|++++ .|++++.|+.|++||
T Consensus       135 ~~~h~~~v~~~~~~~-----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd  209 (420)
T 3vl1_A          135 DQAHVSEITKLKFFP-----SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE  209 (420)
T ss_dssp             TTSSSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             cccccCccEEEEECC-----CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence            678999999999987     44689999999999999999999999999999999999999886 688999999999999


Q ss_pred             CCCCeeEEEeec---CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEE
Q 010816          268 TTQGKLIRELKG---HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (500)
Q Consensus       268 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~w  344 (500)
                      +++++.+..+..   +...+.++++.+............ . ..             .......+..+++|+.|+.|++|
T Consensus       210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~-v~-------------~~~~s~~~~~l~~~~~dg~i~i~  274 (420)
T 3vl1_A          210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS-K-KN-------------NLEFGTYGKYVIAGHVSGVITVH  274 (420)
T ss_dssp             TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC-C-CC-------------TTCSSCTTEEEEEEETTSCEEEE
T ss_pred             CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC-c-cc-------------ceEEcCCCCEEEEEcCCCeEEEE
Confidence            999999888864   556788877765321100000000 0 00             00011235689999999999999


Q ss_pred             cCCCCCCCceeeecccCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCce-EEEEeC-CcccEEEEEeeeeeeecCCCC
Q 010816          345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGKF-VAVFRG-HVGPVYQIRFELIYCFRYPSN  421 (500)
Q Consensus       345 d~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~lasgs~Dg~i~lwd~~~~~~-~~~~~~-h~~~v~~~~~~~~~~~~~~~~  421 (500)
                      |+...........+|...|.+++|+|++. +|++|+.||.|++||+.+++. +..+.+ |...+..+             
T Consensus       275 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-------------  341 (420)
T 3vl1_A          275 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-------------  341 (420)
T ss_dssp             ETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-------------
T ss_pred             ECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-------------
Confidence            98776555555567889999999999998 999999999999999998754 667776 56666655             


Q ss_pred             ceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc---------ccccccCcccCEEEEEEcCCCC---EEEEE
Q 010816          422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK---------LKQDLPGHADEVFAVDWSPDGE---KVASG  489 (500)
Q Consensus       422 ~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~dg~---~l~s~  489 (500)
                                     +.+++++|++++.|+.|++|++...+         ....+.+|.+.|.+++|+|+++   .|+++
T Consensus       342 ---------------~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~  406 (420)
T 3vl1_A          342 ---------------YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEV  406 (420)
T ss_dssp             ---------------EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEE
T ss_pred             ---------------EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEE
Confidence                           24578899999999999999987632         1223557888999999999999   89999


Q ss_pred             eCCCcEEEec
Q 010816          490 GKDRVLKLWM  499 (500)
Q Consensus       490 ~~D~~v~iW~  499 (500)
                      |.++.+.+|+
T Consensus       407 g~~g~~~~~~  416 (420)
T 3vl1_A          407 GKNNFCALYN  416 (420)
T ss_dssp             ETTTEEEEEE
T ss_pred             cCCceEEEEe
Confidence            9999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.5e-40  Score=341.23  Aligned_cols=355  Identities=18%  Similarity=0.285  Sum_probs=294.7

Q ss_pred             cccccccCCccc-EEEEEEcC--CCCeEEEEeCCCcEEEEeCCCC--------ceeEEecCCCCCEEEEEEcCCCCEEEE
Q 010816           99 RCSATIAGHTEA-VLSVAFSP--DGRQLASGSGDTTVRLWDLNTQ--------TPMFKCTGHKNWVLCIAWSADGKHLVS  167 (500)
Q Consensus        99 ~~~~~~~gh~~~-V~~~~~sp--~~~~lat~~~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~v~~s~~~~~l~s  167 (500)
                      .....+.+|.+. |.+++|+|  ++++||+|+.||+|+|||+.++        ..+..+.+|..+|.+++|+|++++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            345678899999 99999999  9999999999999999999744        556677889999999999999999999


Q ss_pred             EeCC----CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccc--
Q 010816          168 GSKA----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL--  241 (500)
Q Consensus       168 ~~~d----~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~--  241 (500)
                      ++.+    +.|.+||  +++.. ..+.+|...|.++.|+|..    ...+++++.|+.|++||+.+++++..+.+|..  
T Consensus       134 ~~~~~~~~~~v~~~d--~~~~~-~~~~~~~~~v~~~~~~~~~----~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  206 (615)
T 1pgu_A          134 VGEGRDNFGVFISWD--SGNSL-GEVSGHSQRINACHLKQSR----PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG  206 (615)
T ss_dssp             EECCSSCSEEEEETT--TCCEE-EECCSCSSCEEEEEECSSS----SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred             eccCCCCccEEEEEE--CCCcc-eeeecCCccEEEEEECCCC----CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC
Confidence            9988    7899998  34333 3567899999999998732    12799999999999999999999999999999  


Q ss_pred             -cEEEEEeCCC-C-eEEEEeCCCeEEEEeCCCCeeEEEe-e---cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816          242 -AVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIREL-K---GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (500)
Q Consensus       242 -~v~~~~~~~~-~-~l~t~~~dg~i~lwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (500)
                       .|.+++|+++ + .+++++.|+.|++||+.+++.+..+ .   .|...|.+++++ +                      
T Consensus       207 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~----------------------  263 (615)
T 1pgu_A          207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-D----------------------  263 (615)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-S----------------------
T ss_pred             ceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-C----------------------
Confidence             9999999998 6 6888999999999999999999888 6   888899999876 4                      


Q ss_pred             HHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc----cCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH----QQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (500)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h----~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~  390 (500)
                                    +..+++++.|+.|++||+.... ....+..+    ...+.++.|+ ++.++++++.||.|++||+.
T Consensus       264 --------------~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~  327 (615)
T 1pgu_A          264 --------------SQKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELG  327 (615)
T ss_dssp             --------------SSEEEEEETTSEEEEEETTTTE-EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETT
T ss_pred             --------------CCEEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECC
Confidence                          3579999999999999986543 23334444    4678888886 89999999999999999999


Q ss_pred             CCceEEEEeCCcccEEEEEeeee--------------------------eeecCC-------------------------
Q 010816          391 TGKFVAVFRGHVGPVYQIRFELI--------------------------YCFRYP-------------------------  419 (500)
Q Consensus       391 ~~~~~~~~~~h~~~v~~~~~~~~--------------------------~~~~~~-------------------------  419 (500)
                      +++.+..+.+|..++.++.+ .-                          .+...+                         
T Consensus       328 ~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  406 (615)
T 1pgu_A          328 HDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFG  406 (615)
T ss_dssp             EEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECS
T ss_pred             CCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCccc
Confidence            99998889888877777665 10                          000000                         


Q ss_pred             -----------------------------------------------------------CCceeee-------------e
Q 010816          420 -----------------------------------------------------------SNFYCVV-------------D  427 (500)
Q Consensus       420 -----------------------------------------------------------~~~~~~~-------------~  427 (500)
                                                                                 .....+.             .
T Consensus       407 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~  486 (615)
T 1pgu_A          407 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP  486 (615)
T ss_dssp             SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC
T ss_pred             CCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCC
Confidence                                                                       0000000             1


Q ss_pred             ccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC-cccCEEEEEEcC----------CCCEEEEEeCCCcEE
Q 010816          428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSP----------DGEKVASGGKDRVLK  496 (500)
Q Consensus       428 ~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~----------dg~~l~s~~~D~~v~  496 (500)
                      ....+..++|+|++++|++++.|+.|++||+.+++.+..+.+ |...|++++|+|          ++++|++++.|++|+
T Consensus       487 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~  566 (615)
T 1pgu_A          487 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF  566 (615)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred             ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence            122356688999999999999999999999999999988888 999999999999          999999999999999


Q ss_pred             EecC
Q 010816          497 LWMG  500 (500)
Q Consensus       497 iW~~  500 (500)
                      +|+.
T Consensus       567 iw~~  570 (615)
T 1pgu_A          567 IYSV  570 (615)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            9973

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.3e-41  Score=355.51  Aligned_cols=351  Identities=19%  Similarity=0.260  Sum_probs=290.5

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      ..+.+|.+.|.+++|+|++++||+|+.||.|+|||+.++..+..+.+|..+|.+++|+|++++|++++.||.|++||+.+
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~   86 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-eEEEEecCccccEEEEEeCC-CC-eEEEEe
Q 010816          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGG-DG-VIYTGS  258 (500)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~-~l~t~~  258 (500)
                      ++... .+.+|...|.++.|+|     ++..+++++.||.|++||+..+ .....+.+|...|.++.|++ ++ .+++++
T Consensus        87 ~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           87 GEKVV-DFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             CCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             CcEEE-EEecCCCCEEEEEEeC-----CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence            87654 4678999999999987     4468999999999999999887 77788889999999999998 55 688999


Q ss_pred             CCCeEEEEeCCCCeeEEEeecCC-ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          259 QDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      .||.|++||+.++.....+..+. ..+..+++++.                                  ..+..+++++.
T Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------------------~~~~~l~~~~~  206 (814)
T 3mkq_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL----------------------------------PDKPYMITASD  206 (814)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS----------------------------------TTCCEEEEECT
T ss_pred             CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC----------------------------------CCCCEEEEEeC
Confidence            99999999998887776665544 77888877762                                  01457999999


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee--
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC--  415 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--  415 (500)
                      |+.|++||.... .....+.+|...|.+++|+|++++|++++.||.|++||..+++.+..+..|...+.++.+.....  
T Consensus       207 dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  285 (814)
T 3mkq_A          207 DLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN  285 (814)
T ss_dssp             TSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred             CCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence            999999997654 34556778999999999999999999999999999999999999999999998998887632110  


Q ss_pred             ------------ecC----------CCCceee-----------------------------------eeccccceeeEEc
Q 010816          416 ------------FRY----------PSNFYCV-----------------------------------VDMSCCMSLYSWS  438 (500)
Q Consensus       416 ------------~~~----------~~~~~~~-----------------------------------~~~~~~~~~~~~s  438 (500)
                                  ...          +.+....                                   ......+..++|+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  365 (814)
T 3mkq_A          286 YIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHS  365 (814)
T ss_dssp             EEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEEC
T ss_pred             EEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEEC
Confidence                        000          0000000                                   0011124568899


Q ss_pred             CCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          439 ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       439 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |+|+++++++ |+.+.+|++.....     .+.+.+.+++|+|||++|++++.|++|++|+
T Consensus       366 pdg~~la~~~-~~~~~i~~~~~~~~-----~~~~~i~~~~~spdg~~la~~~~~g~v~l~~  420 (814)
T 3mkq_A          366 PNGRFVTVVG-DGEYVIYTALAWRN-----KAFGKCQDFVWGPDSNSYALIDETGQIKYYK  420 (814)
T ss_dssp             TTSSEEEEEE-TTEEEEEETTTTEE-----EEEEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred             CCCCEEEEec-CCEEEEEECccccc-----cCCCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence            9999999998 89999999754332     2446678899999999999999999999984

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-43  Score=350.06  Aligned_cols=316  Identities=13%  Similarity=0.104  Sum_probs=233.8

Q ss_pred             CcccEEEEEEcCCC---------CeEEE-------------------EeCCCcEEEEeCCCCcee----EEecCCCCCEE
Q 010816          107 HTEAVLSVAFSPDG---------RQLAS-------------------GSGDTTVRLWDLNTQTPM----FKCTGHKNWVL  154 (500)
Q Consensus       107 h~~~V~~~~~sp~~---------~~lat-------------------~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~  154 (500)
                      +.+.|.+++|+|++         ++||+                   ++.|++|+|||+.+++..    ..+.+|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            45677777777765         45555                   567899999999876542    34567889999


Q ss_pred             EEEEcCC------CCEEEEEeCCCeEEEEeCCCCCcc----------cccccCcccceEEEEeeeeecCCCCceEEEEeC
Q 010816          155 CIAWSAD------GKHLVSGSKAGELQCWDPQTGKPS----------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (500)
Q Consensus       155 ~v~~s~~------~~~l~s~~~d~~i~~wd~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~  218 (500)
                      +++|+|+      +.+||+++.||+|++||+.++...          ...+.+|...|.+++|++.      ..+++|+.
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~------~~lasgs~  285 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP------TTVVCGFK  285 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS------SEEEEEET
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC------CeEEEEeC
Confidence            9999996      579999999999999999876432          1145688999999999752      37999999


Q ss_pred             CCcEEEEECCCCe-EEEEecCccccEEEE--EeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCc--eEEEEEecC
Q 010816          219 DGDARIWDVSLRK-CVICLSGHTLAVTCV--KWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGH--WVNSLALST  291 (500)
Q Consensus       219 dg~v~iwd~~~~~-~~~~~~~h~~~v~~~--~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~--~v~~~~~~~  291 (500)
                      ||+|++||++++. ....+.+|...|.++  .|++++  .|++|+.|++|+|||+++++....+.+|..  .|.+++++|
T Consensus       286 DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp  365 (524)
T 2j04_B          286 NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP  365 (524)
T ss_dssp             TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred             CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence            9999999998764 445688999999999  577765  689999999999999998877666655542  467788876


Q ss_pred             cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC
Q 010816          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD  371 (500)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~  371 (500)
                      +                                    ...+++++.|++|++||++.... ...+.+|...|++|+|+|+
T Consensus       366 ~------------------------------------~~~l~s~~~d~tv~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~  408 (524)
T 2j04_B          366 Q------------------------------------IYSYIYSDGASSLRAVPSRAAFA-VHPLVSRETTITAIGVSRL  408 (524)
T ss_dssp             T------------------------------------TTEEEEECSSSEEEEEETTCTTC-CEEEEECSSCEEEEECCSS
T ss_pred             C------------------------------------cCeEEEeCCCCcEEEEECccccc-ceeeecCCCceEEEEeCCC
Confidence            4                                    24689999999999999876443 3457789999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc--------cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816          372 GQWVASASFDKSIKLWNGTTGKFVAVFRGHVG--------PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL  443 (500)
Q Consensus       372 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  443 (500)
                      |++||+|+.||+|++||+..+ .+   .+|..        .+++                           ++|+|+++.
T Consensus       409 g~~l~Sgs~Dgtv~lwd~~~~-~~---~~~~~~~~~~~~~~v~~---------------------------v~~sp~g~~  457 (524)
T 2j04_B          409 HPMVLAGSADGSLIITNAARR-LL---HGIKNSSATQKSLRLWK---------------------------WDYSIKDDK  457 (524)
T ss_dssp             CCBCEEEETTTEEECCBSCSS-TT---TCC------CCCCEEEE---------------------------CBCCSSSCE
T ss_pred             CCeEEEEECCCEEEEEechHh-hc---cccccCccceeeeEEEE---------------------------eccCCCCCe
Confidence            999999999999999998654 21   22211        1222                           256899885


Q ss_pred             EEEEECCCcEEEEECC-CccccccccCcccCEEEEEEcCCCC---EEEEEeCCCcEEEec
Q 010816          444 LLSGSKDSTLKVWDIR-TQKLKQDLPGHADEVFAVDWSPDGE---KVASGGKDRVLKLWM  499 (500)
Q Consensus       444 l~s~s~d~~v~iwd~~-~~~~~~~~~~h~~~V~~l~~s~dg~---~l~s~~~D~~v~iW~  499 (500)
                      +. . .| .+++|+.. ++.....+.+|...|++|+|+|+++   +||+|+.||+||||+
T Consensus       458 ~~-~-~~-~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          458 YR-I-DS-SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             EE-E-CC-CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             EE-c-cC-CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence            52 2 22 23444433 4566778899999999999999964   999999999999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.1e-40  Score=346.85  Aligned_cols=285  Identities=29%  Similarity=0.503  Sum_probs=235.7

Q ss_pred             ccccCCcccEEEEEEcCCC-CeEEEEeCCCcEEEEeCCCC-----ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816          102 ATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~-~~lat~~~d~~i~iwd~~~~-----~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~  175 (500)
                      ..+.+|++.|++++|+|++ ++|+||+.|++|+|||+.+.     .....+.+|...|.+++|+|++++|++|+.|++|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence            3578999999999999875 78999999999999998753     23456789999999999999999999999999999


Q ss_pred             EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe---cCccccEEEEEeCCCC
Q 010816          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCVKWGGDG  252 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~  252 (500)
                      +||+.+++... .+.+|...|.++.|+|     ++..+++|+.|++|++||..........   .+|...|.++.|++++
T Consensus       456 vwd~~~~~~~~-~~~~h~~~v~~~~~s~-----~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          456 LWDLAAGVSTR-RFVGHTKDVLSVAFSL-----DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             EEETTTTEEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred             EEECCCCccee-EEeCCCCCEEEEEEeC-----CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence            99999886543 4678999999999987     4568999999999999998655433322   4788999999999875


Q ss_pred             ---eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816          253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (500)
Q Consensus       253 ---~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (500)
                         .+++|+.|++|++||+++++...                                                      
T Consensus       530 ~~~~l~s~s~d~~v~vwd~~~~~~~~------------------------------------------------------  555 (694)
T 3dm0_A          530 LQPTIVSASWDKTVKVWNLSNCKLRS------------------------------------------------------  555 (694)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEE------------------------------------------------------
T ss_pred             CcceEEEEeCCCeEEEEECCCCcEEE------------------------------------------------------
Confidence               58899999999999987644322                                                      


Q ss_pred             cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEE
Q 010816          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR  409 (500)
Q Consensus       330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~  409 (500)
                                               .+.+|...|++++|+|+|++|++|+.||.|++||+.+++.+..+..+ ..+.++ 
T Consensus       556 -------------------------~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~-  608 (694)
T 3dm0_A          556 -------------------------TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHAL-  608 (694)
T ss_dssp             -------------------------EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEE-
T ss_pred             -------------------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEE-
Confidence                                     23467788999999999999999999999999999999887666543 345444 


Q ss_pred             eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcc------------------
Q 010816          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA------------------  471 (500)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~------------------  471 (500)
                                                +|+|++.+|++++ |+.|+|||+++++.+..+..+.                  
T Consensus       609 --------------------------~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (694)
T 3dm0_A          609 --------------------------CFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK  661 (694)
T ss_dssp             --------------------------EECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------C
T ss_pred             --------------------------EEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCce
Confidence                                      6799998888766 5569999999887765543221                  


Q ss_pred             -cCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          472 -DEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       472 -~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                       -.+.+++|+|||++|++|+.||+|++|+.
T Consensus       662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             eEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence             13789999999999999999999999973

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-40  Score=315.71  Aligned_cols=284  Identities=19%  Similarity=0.306  Sum_probs=240.3

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~  182 (500)
                      .+.||.+.|++++|+|++++||+|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  106 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG  106 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CcccccccCcccceEEEEeeeeecCCCCceEEEEeCC-----CcEEEEECCCCe-----------EEEEecCccc--cEE
Q 010816          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRK-----------CVICLSGHTL--AVT  244 (500)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-----g~v~iwd~~~~~-----------~~~~~~~h~~--~v~  244 (500)
                      +..... . +...+.++.|.|     ++..+++++.+     +.|++||+....           .+..+..|..  .+.
T Consensus       107 ~~~~~~-~-~~~~v~~~~~~~-----~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          107 QCVATW-K-SPVPVKRVEFSP-----CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             CEEEEE-E-CSSCEEEEEECT-----TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             cEEEEe-e-cCCCeEEEEEcc-----CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            765432 2 778899999987     45689999988     999999986543           2223334444  677


Q ss_pred             EEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhh
Q 010816          245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (500)
Q Consensus       245 ~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (500)
                      +++|++++ .+++++.||.|++||++++                                                    
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------------------------------------------------  207 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNN----------------------------------------------------  207 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTT----------------------------------------------------
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCC----------------------------------------------------
Confidence            77777665 4666777777777776542                                                    


Q ss_pred             hcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc
Q 010816          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG  403 (500)
Q Consensus       324 ~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~  403 (500)
                                                ......+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +..
T Consensus       208 --------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~  260 (369)
T 3zwl_B          208 --------------------------YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC  260 (369)
T ss_dssp             --------------------------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred             --------------------------cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence                                      11122334567789999999999999999999999999999999888776 555


Q ss_pred             cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC--------------cEEEEECCCccccccccC
Q 010816          404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS--------------TLKVWDIRTQKLKQDLPG  469 (500)
Q Consensus       404 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~--------------~v~iwd~~~~~~~~~~~~  469 (500)
                      ++..+                           +|+|+++++++++.++              .+++||+.+++....+.+
T Consensus       261 ~~~~~---------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  313 (369)
T 3zwl_B          261 PLNTA---------------------------VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG  313 (369)
T ss_dssp             CEEEE---------------------------EECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC
T ss_pred             CceeE---------------------------EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec
Confidence            55555                           6799999999999988              899999999999999999


Q ss_pred             cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          470 HADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       470 h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |...|.+++|+|++++|++++.||+|++|+
T Consensus       314 ~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  343 (369)
T 3zwl_B          314 HFGPLNTVAISPQGTSYASGGEDGFIRLHH  343 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            999999999999999999999999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.2e-41  Score=326.36  Aligned_cols=293  Identities=20%  Similarity=0.261  Sum_probs=249.7

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc------eeEEecCCCCCEEEEEEcCC----C---CEEEE
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSAD----G---KHLVS  167 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~v~~s~~----~---~~l~s  167 (500)
                      ...+.+|.+.|++++|+|  ++|++|+.||+|+|||+.++.      .+..+.+|...|.+++|+|+    +   ++|++
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence            346789999999999999  899999999999999999887      67788899999999999999    9   99999


Q ss_pred             EeCCCeEEEEeCCCCCcc----cccccCc-----ccceEEEEeeeeecCCCCce-EEEEeCCCcEEEEECCC------Ce
Q 010816          168 GSKAGELQCWDPQTGKPS----GNPLSGH-----KKWITGISWEPVHLNAPCRR-FVSASKDGDARIWDVSL------RK  231 (500)
Q Consensus       168 ~~~d~~i~~wd~~~~~~~----~~~~~~~-----~~~v~~~~~~~~~~~~~~~~-~~s~s~dg~v~iwd~~~------~~  231 (500)
                      ++.|+.|++||+.+++..    ...+..|     ...|.++.|.+... .++.. +++++.||.|++||++.      ++
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND-RLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC-CCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence            999999999999887641    2345667     58999999982100 13457 99999999999999988      65


Q ss_pred             EEE-----Ee-------cCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816          232 CVI-----CL-------SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (500)
Q Consensus       232 ~~~-----~~-------~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (500)
                      ++.     .+       ..|...|.+++|++++.+++++.|+.|++||+++++.+..+..                    
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------  225 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFES--------------------  225 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEEC--------------------
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEec--------------------
Confidence            554     55       4588899999999988888899999999999987655443221                    


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc---cCcEEEEEECCCCCEEE
Q 010816          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH---QQLVNHVYFSPDGQWVA  376 (500)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h---~~~v~~l~~sp~g~~la  376 (500)
                                                                              ..+|   ...|.+++|+|++++|+
T Consensus       226 --------------------------------------------------------~~~h~~~~~~i~~i~~~~~~~~l~  249 (397)
T 1sq9_A          226 --------------------------------------------------------QHSMINNSNSIRSVKFSPQGSLLA  249 (397)
T ss_dssp             --------------------------------------------------------CC---CCCCCEEEEEECSSTTEEE
T ss_pred             --------------------------------------------------------cccccccCCccceEEECCCCCEEE
Confidence                                                                    0124   56799999999999999


Q ss_pred             EEeCC---CcEEEEeCCCCceEEEEeC-------------CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816          377 SASFD---KSIKLWNGTTGKFVAVFRG-------------HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (500)
Q Consensus       377 sgs~D---g~i~lwd~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  440 (500)
                      +++.|   +.|++||+.+++.+..+.+             |...+.++                           +|+|+
T Consensus       250 ~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~~~~~  302 (397)
T 1sq9_A          250 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL---------------------------SFNDS  302 (397)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE---------------------------EECSS
T ss_pred             EEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEE---------------------------EECCC
Confidence            99999   9999999999999999988             88887776                           57999


Q ss_pred             CCEEEEEECCCcEEEEECCCcccccccc------Cc---------------ccCEEEEEEcCCC----------CEEEEE
Q 010816          441 SRLLLSGSKDSTLKVWDIRTQKLKQDLP------GH---------------ADEVFAVDWSPDG----------EKVASG  489 (500)
Q Consensus       441 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~------~h---------------~~~V~~l~~s~dg----------~~l~s~  489 (500)
                      +++|++++.|+.|++||+++++.+..+.      +|               ...|++++|+|+|          ++|+++
T Consensus       303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~  382 (397)
T 1sq9_A          303 GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV  382 (397)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEe
Confidence            9999999999999999999999888888      78               8999999999998          799999


Q ss_pred             eCCCcEEEec
Q 010816          490 GKDRVLKLWM  499 (500)
Q Consensus       490 ~~D~~v~iW~  499 (500)
                      +.|+.|++|+
T Consensus       383 ~~dg~i~iw~  392 (397)
T 1sq9_A          383 CLDRSIRWFR  392 (397)
T ss_dssp             ETTTEEEEEE
T ss_pred             cCCCcEEEEE
Confidence            9999999997

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.5e-40  Score=324.05  Aligned_cols=320  Identities=25%  Similarity=0.425  Sum_probs=268.3

Q ss_pred             ccccCCcccE-EEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          102 ATIAGHTEAV-LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       102 ~~~~gh~~~V-~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      .++.||.+.| .++++  ++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++ +|++|+.||+|++||+.
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence            4678999885 55555  67899999999999999999999999999999999999999988 99999999999999999


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe-----------------------EEEEec
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-----------------------CVICLS  237 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~-----------------------~~~~~~  237 (500)
                      +++... .+.+|...|.++.|.+.   .+...+++|+.|+.|++||++.+.                       .+..+.
T Consensus       192 ~~~~~~-~~~~h~~~v~~l~~~~~---~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (464)
T 3v7d_B          192 KGCCTH-VFEGHNSTVRCLDIVEY---KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  267 (464)
T ss_dssp             TTEEEE-EECCCSSCEEEEEEEES---SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred             CCcEEE-EECCCCCccEEEEEecC---CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence            887543 56789999999999863   244689999999999999998764                       255678


Q ss_pred             CccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHH
Q 010816          238 GHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (500)
Q Consensus       238 ~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (500)
                      +|...|.++... ...+++|+.|+.|++||+++++.+..+.+|...|.+++++++                         
T Consensus       268 ~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-------------------------  321 (464)
T 3v7d_B          268 GHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE-------------------------  321 (464)
T ss_dssp             CCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-------------------------
T ss_pred             CccceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC-------------------------
Confidence            899999998655 347999999999999999999999999999999999998875                         


Q ss_pred             HHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 010816          318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV  397 (500)
Q Consensus       318 ~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~  397 (500)
                                 +..+++|+.|++|++||+... .....+.+|...|.+++|+  +.+|++|+.||.|++||+.+++....
T Consensus       322 -----------~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          322 -----------RKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             -----------TTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             -----------CCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence                       357999999999999998654 3456678999999999997  58999999999999999998776544


Q ss_pred             EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc-ccCcccCEEE
Q 010816          398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFA  476 (500)
Q Consensus       398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~h~~~V~~  476 (500)
                      +. |...+                           ...+|+|+++++++|+ |+.|++||+++++.+.. +.+|.+.|++
T Consensus       388 ~~-~~~~~---------------------------~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~  438 (464)
T 3v7d_B          388 YH-HTNLS---------------------------AITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWS  438 (464)
T ss_dssp             EE-CTTCC---------------------------CEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEE
T ss_pred             ec-CCCCc---------------------------cEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEE
Confidence            32 22221                           2236789999999999 99999999999998875 6778999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEe
Q 010816          477 VDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       477 l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      ++|+ ++..+++++.|+.+.+|
T Consensus       439 v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          439 VNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEE
T ss_pred             EEec-CCEEEEEEEeCCeEEEE
Confidence            9997 33455566778877665

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2e-40  Score=322.52  Aligned_cols=290  Identities=26%  Similarity=0.515  Sum_probs=237.7

Q ss_pred             eeEEEEEEeecc----------eEeEEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010816           79 EKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC  146 (500)
Q Consensus        79 ~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~  146 (500)
                      ..+..+.|.|..          ..+++..  ..+..++.+|.+.|.+++|+|++++||+|+.|++|+|||+.+..++..+
T Consensus       109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~  188 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM  188 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence            456667776642          3345543  3456788999999999999999999999999999999999999988889


Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEE
Q 010816          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD  226 (500)
Q Consensus       147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd  226 (500)
                      .+|...|.+++|+|++++|++|+.|++|++||+.++.... .+.+|...|..+.|.|     ++..+++|+.|++|++||
T Consensus       189 ~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~g~~l~s~s~D~~v~vwd  262 (410)
T 1vyh_C          189 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQ-----DGTLIASCSNDQTVRVWV  262 (410)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEE
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEeCCCccEEEEEECC-----CCCEEEEEcCCCeEEEEE
Confidence            9999999999999999999999999999999999987654 4678999999998865     456899999999999999


Q ss_pred             CCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCC
Q 010816          227 VSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ  306 (500)
Q Consensus       227 ~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  306 (500)
                      +.++++...+.+|...|.++.|++++.......         ..+....                               
T Consensus       263 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~---------~~~~~~~-------------------------------  302 (410)
T 1vyh_C          263 VATKECKAELREHRHVVECISWAPESSYSSISE---------ATGSETK-------------------------------  302 (410)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGG---------CCSCC---------------------------------
T ss_pred             CCCCceeeEecCCCceEEEEEEcCcccccchhh---------hcccccc-------------------------------
Confidence            999999999999999999999998642110000         0000000                               


Q ss_pred             CCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEE
Q 010816          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL  386 (500)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~l  386 (500)
                                       .....+..+++|+.|++|++||+.... ....+.+|...|++++|+|+|++|++|+.||.|++
T Consensus       303 -----------------~~~~~g~~l~sgs~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~v  364 (410)
T 1vyh_C          303 -----------------KSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV  364 (410)
T ss_dssp             ----------------------CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEE
T ss_pred             -----------------ccCCCCCEEEEEeCCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence                             000113467888888888888875432 34566789999999999999999999999999999


Q ss_pred             EeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       387 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                      ||+.+++++..+.+|...|.++                           +|+|++.+|++|+.|++|++|+++
T Consensus       365 wd~~~~~~~~~~~~h~~~v~~l---------------------------~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          365 WDYKNKRCMKTLNAHEHFVTSL---------------------------DFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             ECCTTSCCCEEEECCSSCEEEE---------------------------EECSSSSCEEEEETTSEEEEEC--
T ss_pred             EECCCCceEEEEcCCCCcEEEE---------------------------EEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9999999999999999999887                           569999999999999999999863

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-41  Score=328.47  Aligned_cols=333  Identities=14%  Similarity=0.174  Sum_probs=248.0

Q ss_pred             ccccccc-cCCcccEEEEEEcC-CCCeEEEEeCCCcEEEEeCCC---Cc---eeEEecCCCCCEEEEEEcCCCCEEEEEe
Q 010816           98 NRCSATI-AGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT---QT---PMFKCTGHKNWVLCIAWSADGKHLVSGS  169 (500)
Q Consensus        98 ~~~~~~~-~gh~~~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~---~~---~~~~~~~h~~~v~~v~~s~~~~~l~s~~  169 (500)
                      +.+...+ .+|.+.|++++|+| ++++||+|+.|++|+|||+.+   +.   +...+ +|...|.+++|+|++++|++|+
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s  130 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSS  130 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence            3445566 89999999999999 999999999999999999865   32   23333 5999999999999999999999


Q ss_pred             CCCeEEEEeCC---CCCcccccccCcccceEEEEeeee-----------ecCCCCceEEEEeCCCcEEEEECCCCeEEEE
Q 010816          170 KAGELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPV-----------HLNAPCRRFVSASKDGDARIWDVSLRKCVIC  235 (500)
Q Consensus       170 ~d~~i~~wd~~---~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~  235 (500)
                      .|++|++||+.   +++... ...+|  .+..+.|.|.           ....++..+++|+.|+.|++||+++++++..
T Consensus       131 ~dg~i~vwd~~~~~~~~~~~-~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          131 KDGQIIVLKVNHYQQESEVK-FLNCE--CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             TTSEEEEEEEEEEEETTEEE-EEEEE--EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCEEEEEEeccccCCceee-ccccc--eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence            99999999984   443321 11112  3333333320           1233567899999999999999999999999


Q ss_pred             ecC--ccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHH
Q 010816          236 LSG--HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (500)
Q Consensus       236 ~~~--h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (500)
                      +.+  |...|++++|++++ .|++|+.||.|++||+++++.+..+. .|...|.++++++.+.                 
T Consensus       208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s-----------------  270 (437)
T 3gre_A          208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYG-----------------  270 (437)
T ss_dssp             EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTC-----------------
T ss_pred             EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccC-----------------
Confidence            988  89999999999887 58899999999999999999998886 7778899998776421                 


Q ss_pred             HHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce-----------------------eeec--ccCcEEEE
Q 010816          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT-----------------------RMTG--HQQLVNHV  366 (500)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~-----------------------~~~~--h~~~v~~l  366 (500)
                                     ..+..+++|+.|++|++||+........                       .+.+  |...|.++
T Consensus       271 ---------------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l  335 (437)
T 3gre_A          271 ---------------KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI  335 (437)
T ss_dssp             ---------------TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred             ---------------CCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence                           1234789999999999999864431110                       1122  77779999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816          367 YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS  446 (500)
Q Consensus       367 ~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  446 (500)
                      +|+ ++++|++|+.|+.|++||+.+++.+..+.+|......+..                        ..++++..+++.
T Consensus       336 ~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~  390 (437)
T 3gre_A          336 SVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIP------------------------TQVTANLTMLLR  390 (437)
T ss_dssp             EEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEE------------------------EEEETTEEEEEE
T ss_pred             EEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEE------------------------EEeecceEEEEE
Confidence            999 7899999999999999999999999988887644222211                        123445444444


Q ss_pred             EECCCcEEEEECCCccccccccCcccCEEEEEEcCC--CCEEEEEeCCCcEEEec
Q 010816          447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD--GEKVASGGKDRVLKLWM  499 (500)
Q Consensus       447 ~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d--g~~l~s~~~D~~v~iW~  499 (500)
                      .        |+............|.+.|++++|+++  +..|++|+.||+|+||.
T Consensus       391 ~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          391 K--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             E--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             e--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            3        333333334455679999999999998  78999999999999995

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-39  Score=304.97  Aligned_cols=283  Identities=27%  Similarity=0.417  Sum_probs=243.3

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      +..++.+|.+.|.+++| |++++||+|+.||.|++||+.++.....+..|...|.+++|+|++++|++++.|+.|++|++
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~   88 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL   88 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence            34567899999999999 99999999999999999999998888888899999999999999999999999999999998


Q ss_pred             CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC
Q 010816          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~  259 (500)
                      ......                                             +.+..+.+|...|.++.|. ++.+++++.
T Consensus        89 ~~~~~~---------------------------------------------~~~~~~~~~~~~i~~~~~~-~~~l~~~~~  122 (313)
T 3odt_A           89 FATSGE---------------------------------------------DPLYTLIGHQGNVCSLSFQ-DGVVISGSW  122 (313)
T ss_dssp             TCCTTS---------------------------------------------CC-CEECCCSSCEEEEEEE-TTEEEEEET
T ss_pred             eecCCC---------------------------------------------CcccchhhcccCEEEEEec-CCEEEEEeC
Confidence            653211                                             1112235677788888884 457888999


Q ss_pred             CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (500)
Q Consensus       260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~  339 (500)
                      |+.|++||  .++....+..|...+.++.+.+.                                   .+..+++++.|+
T Consensus       123 d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~-----------------------------------~~~~l~~~~~d~  165 (313)
T 3odt_A          123 DKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF-----------------------------------SENKFLTASADK  165 (313)
T ss_dssp             TSEEEEEE--TTEEEEEEECCSSCEEEEEEEET-----------------------------------TTTEEEEEETTS
T ss_pred             CCCEEEEc--CCcEEEecccCCCceeEEEEccC-----------------------------------CCCEEEEEECCC
Confidence            99999998  66777788888888888877652                                   145799999999


Q ss_pred             eEEEEcCCCCCCCceeeec-ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816          340 TMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY  418 (500)
Q Consensus       340 ~v~~wd~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  418 (500)
                      .+++||..   .....+.. |...+.+++|+|++. +++++.||.|++||+.+++.+..+.+|.+++.++          
T Consensus       166 ~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~----------  231 (313)
T 3odt_A          166 TIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI----------  231 (313)
T ss_dssp             CEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE----------
T ss_pred             CEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEE----------
Confidence            99999932   23344455 889999999999998 9999999999999999999999999999999887          


Q ss_pred             CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                                       +|+|++ .|++++.||.|++||+++++....+..|...|.+++|+|+++ +++++.|+.|++|
T Consensus       232 -----------------~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw  292 (313)
T 3odt_A          232 -----------------KLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIF  292 (313)
T ss_dssp             -----------------EECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEE
T ss_pred             -----------------EEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEE
Confidence                             568999 589999999999999999999999999999999999999998 6789999999999


Q ss_pred             c
Q 010816          499 M  499 (500)
Q Consensus       499 ~  499 (500)
                      +
T Consensus       293 ~  293 (313)
T 3odt_A          293 S  293 (313)
T ss_dssp             E
T ss_pred             e
Confidence            7

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.7e-40  Score=307.05  Aligned_cols=246  Identities=27%  Similarity=0.457  Sum_probs=222.8

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      ...+.||...|.+++|+|++.++++++.|++|++||+.+++++..+..|...+.+++|+|++++|++|+.|+.|++||++
T Consensus        73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~  152 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE  152 (321)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred             eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence            34578999999999999999999999999999999999999988888999999999999999999999999999999999


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeC
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ  259 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~  259 (500)
                      +++... .+..|...+.+++|+|     ++..+++|+.|+.|++||+++++++..+.+|..+|.+++|++++ .|++|+.
T Consensus       153 ~~~~~~-~~~~~~~~v~~~~~sp-----dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          153 SGKKEY-SLDTRGKFILSIAYSP-----DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             TCSEEE-EEECSSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred             CCceeE-EecCCCceEEEEEECC-----CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence            887543 4567788899999987     55789999999999999999999999999999999999999987 5888999


Q ss_pred             CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (500)
Q Consensus       260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~  339 (500)
                      |+.|++||+++++...                                                                
T Consensus       227 dg~i~iwd~~~~~~~~----------------------------------------------------------------  242 (321)
T 3ow8_A          227 DGYIKIYDVQHANLAG----------------------------------------------------------------  242 (321)
T ss_dssp             TSCEEEEETTTCCEEE----------------------------------------------------------------
T ss_pred             CCeEEEEECCCcceeE----------------------------------------------------------------
Confidence            9999999987654322                                                                


Q ss_pred             eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCC
Q 010816          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP  419 (500)
Q Consensus       340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  419 (500)
                                     .+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|.+.|.++           
T Consensus       243 ---------------~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v-----------  296 (321)
T 3ow8_A          243 ---------------TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV-----------  296 (321)
T ss_dssp             ---------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE-----------
T ss_pred             ---------------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE-----------
Confidence                           234677789999999999999999999999999999999999999999999888           


Q ss_pred             CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                                      +|+|++++|++++.|+.|++||.
T Consensus       297 ----------------~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          297 ----------------KYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             ----------------EECTTSSEEEEEETTCCEEEEEC
T ss_pred             ----------------EECCCCCEEEEEeCCCeEEEEeC
Confidence                            56999999999999999999996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.7e-40  Score=314.70  Aligned_cols=290  Identities=18%  Similarity=0.313  Sum_probs=236.1

Q ss_pred             cccCCcccEEEEEEcCCCCeE-EEEeC---CCcEEEEeCCCCceeEE-ecCCCCCEEEEEEcCC---CCEEEEEeCCCeE
Q 010816          103 TIAGHTEAVLSVAFSPDGRQL-ASGSG---DTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSAD---GKHLVSGSKAGEL  174 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~l-at~~~---d~~i~iwd~~~~~~~~~-~~~h~~~v~~v~~s~~---~~~l~s~~~d~~i  174 (500)
                      .+.+|.+.|.+++|+|++..+ ++|+.   |+.|+|||+.++..... ..+|...|.+++|+|+   +++|++|+.|+.|
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL   92 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence            346799999999999999655 55655   99999999998776533 3379999999999998   6999999999999


Q ss_pred             EEEeCCCCCcccccccCcccceEEEEeeee-ecCCCCceEEEEeCCCcEEEEECCCCe-EEEEecCccc----cEEEEE-
Q 010816          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPV-HLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTL----AVTCVK-  247 (500)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~s~s~dg~v~iwd~~~~~-~~~~~~~h~~----~v~~~~-  247 (500)
                      ++||+.+++.....+.+|...|.++.|.+. .++.++..+++++.|+.|++||++.+. .+..+..|..    .+.++. 
T Consensus        93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  172 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF  172 (357)
T ss_dssp             EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEE
T ss_pred             EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEE
Confidence            999999887344567889999999988753 334566789999999999999999876 6666665544    788888 


Q ss_pred             ---eCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhh
Q 010816          248 ---WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (500)
Q Consensus       248 ---~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (500)
                         |++++ .+++++.|+.|++||+++++...                                                
T Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~------------------------------------------------  204 (357)
T 3i2n_A          173 GNAYNQEERVVCAGYDNGDIKLFDLRNMALRW------------------------------------------------  204 (357)
T ss_dssp             ECCCC-CCCEEEEEETTSEEEEEETTTTEEEE------------------------------------------------
T ss_pred             EeccCCCCCEEEEEccCCeEEEEECccCceee------------------------------------------------
Confidence               55554 57788888889998887654211                                                


Q ss_pred             hcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC---CCCEEEEEeCCCcEEEEeCCCCceEEEEe-
Q 010816          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFR-  399 (500)
Q Consensus       324 ~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp---~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-  399 (500)
                                                      ...|...|.+++|+|   ++.+|++|+.||.|++||+++++.+..+. 
T Consensus       205 --------------------------------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  252 (357)
T 3i2n_A          205 --------------------------------ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS  252 (357)
T ss_dssp             --------------------------------EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred             --------------------------------ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence                                            123556789999999   99999999999999999998876544443 


Q ss_pred             ----CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEECCCcEEEEECCCc-------------
Q 010816          400 ----GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVWDIRTQ-------------  461 (500)
Q Consensus       400 ----~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s~d~~v~iwd~~~~-------------  461 (500)
                          +|...+.++                           +|+|++. +|++|+.||.|++||++.+             
T Consensus       253 ~~~~~~~~~v~~~---------------------------~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~  305 (357)
T 3i2n_A          253 VSEKAHKSTVWQV---------------------------RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM  305 (357)
T ss_dssp             EEEECCSSCEEEE---------------------------EEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC
T ss_pred             eccCCCcCCEEEE---------------------------EECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc
Confidence                888888777                           5689998 8999999999999998753             


Q ss_pred             ------cccccccCcccCEEEEEEcCCCCEEE-EEeCCCcEEEec
Q 010816          462 ------KLKQDLPGHADEVFAVDWSPDGEKVA-SGGKDRVLKLWM  499 (500)
Q Consensus       462 ------~~~~~~~~h~~~V~~l~~s~dg~~l~-s~~~D~~v~iW~  499 (500)
                            +.+..+.+|.+.|++++|+|+|++|+ +++.|+.|++|+
T Consensus       306 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          306 GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             CCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             ccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence                  34556788999999999999999998 899999999997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6e-40  Score=316.72  Aligned_cols=303  Identities=17%  Similarity=0.207  Sum_probs=239.4

Q ss_pred             cccCCcccEEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCceeEEec--CCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 010816          103 TIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~-~~lat~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd  178 (500)
                      .+.+|.+.|.+++|+|++ ++||+|+.|+.|+|||+.++.....+.  +|...|.+++|+| ++++|++++.|+.|++||
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  147 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD  147 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence            467899999999999999 999999999999999999887766554  7999999999999 789999999999999999


Q ss_pred             CCCCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--eEE
Q 010816          179 PQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIY  255 (500)
Q Consensus       179 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~  255 (500)
                      +.+..... ....+|...|.++.|+|     ++..+++|+.|+.|++||+ .++++..+.+|...|.+++|++++  .++
T Consensus       148 ~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  221 (383)
T 3ei3_B          148 FSGSVIQVFAKTDSWDYWYCCVDVSV-----SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMA  221 (383)
T ss_dssp             TTSCEEEEEECCCCSSCCEEEEEEET-----TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred             CCCCceEEEeccCCCCCCeEEEEECC-----CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence            98532211 11234557899999987     4568999999999999999 577888899999999999999987  688


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  335 (500)
                      +++.|+.|++||+++++..                                                             
T Consensus       222 s~~~d~~i~iwd~~~~~~~-------------------------------------------------------------  240 (383)
T 3ei3_B          222 TSSVDATVKLWDLRNIKDK-------------------------------------------------------------  240 (383)
T ss_dssp             EEETTSEEEEEEGGGCCST-------------------------------------------------------------
T ss_pred             EEeCCCEEEEEeCCCCCcc-------------------------------------------------------------
Confidence            9999999999998653210                                                             


Q ss_pred             eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeee
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY  414 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~  414 (500)
                                    ... ....+|...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+.+|......       
T Consensus       241 --------------~~~-~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------  298 (383)
T 3ei3_B          241 --------------NSY-IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ-------  298 (383)
T ss_dssp             --------------TCE-EEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT-------
T ss_pred             --------------cce-EEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc-------
Confidence                          000 11125777899999999 9999999999999999999998887777665432110       


Q ss_pred             eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC--cccCEEEEEEcCCCCEEEEEeCC
Q 010816          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG--HADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                         .................++|+|++++  +|+.|+.|++||+.+++.+..+.+  |...+..++|+|+|++|++|+ |
T Consensus       299 ---~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d  372 (383)
T 3ei3_B          299 ---HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G  372 (383)
T ss_dssp             ---TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T
T ss_pred             ---cccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-C
Confidence               00000000011112233467888887  888999999999999999888877  456777889999999999997 9


Q ss_pred             CcEEEecC
Q 010816          493 RVLKLWMG  500 (500)
Q Consensus       493 ~~v~iW~~  500 (500)
                      +.|++|+.
T Consensus       373 ~~i~iw~~  380 (383)
T 3ei3_B          373 FNILIWNR  380 (383)
T ss_dssp             TEEEEEEC
T ss_pred             CcEEEEec
Confidence            99999973

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.7e-40  Score=314.05  Aligned_cols=300  Identities=16%  Similarity=0.247  Sum_probs=245.3

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~  182 (500)
                      ..|.++|.+++|+|++++||+|+.|+.|+|||+.+++  .+..+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence            4589999999999999999999999999999999887  77888899999999999999999999999999999999877


Q ss_pred             Cccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe----EEEEecCccccEEEEEeCCCC-eEEE
Q 010816          183 KPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHTLAVTCVKWGGDG-VIYT  256 (500)
Q Consensus       183 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~-~l~t  256 (500)
                      +... ..+..|...+.++.|.|     ++..+++++.|+.|++||++.+.    ......+|...|.++.|++++ .+++
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAP-----NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECT-----TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             eeeeeEEeecCCCceeEEEECC-----CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence            5322 23467888999999986     45689999999999999998765    233346789999999999886 6889


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                      ++.|+.|++||++.........                                                          
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~----------------------------------------------------------  181 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPA----------------------------------------------------------  181 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCC----------------------------------------------------------
T ss_pred             EcCCCCEEEEEccccccccccc----------------------------------------------------------
Confidence            9999999999986432100000                                                          


Q ss_pred             CCCeEEEEcC-CCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816          337 DDFTMFLWEP-AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC  415 (500)
Q Consensus       337 ~d~~v~~wd~-~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  415 (500)
                          ...|.. .........+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|..++.++       
T Consensus       182 ----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~-------  250 (372)
T 1k8k_C          182 ----PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV-------  250 (372)
T ss_dssp             ----CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE-------
T ss_pred             ----ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE-------
Confidence                000000 00112233445788899999999999999999999999999999999999999999888877       


Q ss_pred             ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC--ccc------------------------------
Q 010816          416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT--QKL------------------------------  463 (500)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~--~~~------------------------------  463 (500)
                                          +|+|++++|++| .|+.|++|++..  ++.                              
T Consensus       251 --------------------~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (372)
T 1k8k_C          251 --------------------TFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA  309 (372)
T ss_dssp             --------------------EEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred             --------------------EEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence                                568999988887 999999999977  321                              


Q ss_pred             --c------ccc-cCcccCEEEEEEc-CCC---CEEEEEeCCCcEEEec
Q 010816          464 --K------QDL-PGHADEVFAVDWS-PDG---EKVASGGKDRVLKLWM  499 (500)
Q Consensus       464 --~------~~~-~~h~~~V~~l~~s-~dg---~~l~s~~~D~~v~iW~  499 (500)
                        .      ..+ .+|.+.|++++|+ ++|   ++|+||+.||+|++|+
T Consensus       310 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence              0      223 4899999999976 676   9999999999999997

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.3e-39  Score=299.98  Aligned_cols=258  Identities=22%  Similarity=0.380  Sum_probs=197.9

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEe
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCWD  178 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~--~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~~wd  178 (500)
                      .+.||.+.|.+++|+|+|++||+|+.|++|+|||+.+.  +++..+.+|.++|.+++|+++  +++|++|+.|++|++||
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            46799999999999999999999999999999999753  567788999999999999864  88999999999999999


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC---CeEE
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD---GVIY  255 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~  255 (500)
                      +++++..                                              .+..+.+|...|.+++|+++   ..|+
T Consensus        84 ~~~~~~~----------------------------------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~  117 (297)
T 2pm7_B           84 EENGRWS----------------------------------------------QIAVHAVHSASVNSVQWAPHEYGPMLL  117 (297)
T ss_dssp             BSSSCBC----------------------------------------------CCEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             cCCCceE----------------------------------------------EEEEeecCCCceeEEEeCcCCCCcEEE
Confidence            8765311                                              01123467788899999885   3688


Q ss_pred             EEeCCCeEEEEeCCCCee--EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816          256 TGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (500)
                      +++.|++|++||++++..  ...+..|...|.+++++|.....                                     
T Consensus       118 s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~-------------------------------------  160 (297)
T 2pm7_B          118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE-------------------------------------  160 (297)
T ss_dssp             EEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------------------------------------
T ss_pred             EEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc-------------------------------------
Confidence            999999999999876421  12233444444444443321000                                     


Q ss_pred             EeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc----eEEEEeCCcccEEEEE
Q 010816          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK----FVAVFRGHVGPVYQIR  409 (500)
Q Consensus       334 s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~----~~~~~~~h~~~v~~~~  409 (500)
                          ++                  .+       ...+++++||+|+.|++|++||+++++    +...+.+|...|.++ 
T Consensus       161 ----~~------------------~~-------~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v-  210 (297)
T 2pm7_B          161 ----DG------------------EH-------NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV-  210 (297)
T ss_dssp             --------------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE-
T ss_pred             ----cc------------------cC-------CCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEE-
Confidence                00                  00       001236799999999999999998876    667889999999888 


Q ss_pred             eeeeeeecCCCCceeeeeccccceeeEEcCCC---CEEEEEECCCcEEEEECCCccc---cccc--cCcccCEEEEEEcC
Q 010816          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADS---RLLLSGSKDSTLKVWDIRTQKL---KQDL--PGHADEVFAVDWSP  481 (500)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~s~s~d~~v~iwd~~~~~~---~~~~--~~h~~~V~~l~~s~  481 (500)
                                                +|+|++   .+||+|+.|++|+|||++....   ...+  .+|.+.|++++|+|
T Consensus       211 --------------------------~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  264 (297)
T 2pm7_B          211 --------------------------AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL  264 (297)
T ss_dssp             --------------------------EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS
T ss_pred             --------------------------EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC
Confidence                                      568884   8999999999999999876431   1222  56888999999999


Q ss_pred             CCCEEEEEeCCCcEEEec
Q 010816          482 DGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       482 dg~~l~s~~~D~~v~iW~  499 (500)
                      +|++||+++.|++|+||+
T Consensus       265 ~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          265 SGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             SSCCEEEEETTSCEEEEE
T ss_pred             CCCEEEEEcCCCcEEEEE
Confidence            999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.7e-39  Score=307.32  Aligned_cols=245  Identities=21%  Similarity=0.301  Sum_probs=203.4

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEE----ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK----CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~----~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      .|...|.+++|+|++ .|++|+.||+|+|||+.+++.+..    +.+|.+.|.+++|+|+|++|++|+.|++|++||+++
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            456789999999985 688999999999999998876543    458999999999999999999999999999999999


Q ss_pred             CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec--CccccEEEEEeCCCC--eEEEE
Q 010816          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDG--VIYTG  257 (500)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~--~l~t~  257 (500)
                      ++... .+.+|...|.++.|+|..    ...|++|+.|++|++||++++++...+.  .|...+.+++|++++  ++++|
T Consensus       159 ~~~~~-~~~~h~~~V~~~~~~~~~----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg  233 (344)
T 4gqb_B          159 QVVLS-SYRAHAAQVTCVAASPHK----DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG  233 (344)
T ss_dssp             TEEEE-EECCCSSCEEEEEECSSC----TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred             CcEEE-EEcCcCCceEEEEecCCC----CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence            87654 578999999999998743    2478999999999999999998887764  455678899998743  57788


Q ss_pred             eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      +.|++|++||+++++.+.                                                              
T Consensus       234 ~~dg~v~~wd~~~~~~~~--------------------------------------------------------------  251 (344)
T 4gqb_B          234 DENGTVSLVDTKSTSCVL--------------------------------------------------------------  251 (344)
T ss_dssp             ETTSEEEEEESCC--CCE--------------------------------------------------------------
T ss_pred             ccCCcEEEEECCCCcEEE--------------------------------------------------------------
Confidence            999999999987654332                                                              


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF  416 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  416 (500)
                                       .+.+|...|++++|+|++ ++||+|+.|++|+|||..+++++ .+.+|.+.|+++        
T Consensus       252 -----------------~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v--------  305 (344)
T 4gqb_B          252 -----------------SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDA--------  305 (344)
T ss_dssp             -----------------EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEE--------
T ss_pred             -----------------EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEE--------
Confidence                             234677789999999998 68999999999999999998865 478999999888        


Q ss_pred             cCCCCceeeeeccccceeeEEcCCCC-EEEEEECCCcEEEEECCCccc
Q 010816          417 RYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVWDIRTQKL  463 (500)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s~d~~v~iwd~~~~~~  463 (500)
                                         +|+|+++ +|++|+.|++|++|++.+...
T Consensus       306 -------------------~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          306 -------------------TWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             -------------------EECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             -------------------EEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence                               5699886 678999999999999977544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.3e-40  Score=321.87  Aligned_cols=293  Identities=19%  Similarity=0.269  Sum_probs=226.5

Q ss_pred             cccCCcccEEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCce--eEEecCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 010816          103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd  178 (500)
                      ...+|...|+||+|+| ++++||+|+.||+|+|||+.++..  ...+.+|.+.|.+|+|+| ++++|++|+.||+|++||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            4567899999999999 567999999999999999987654  344568999999999998 689999999999999999


Q ss_pred             CCCCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--eEE
Q 010816          179 PQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIY  255 (500)
Q Consensus       179 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~  255 (500)
                      ++++.... .....+...+.++.|+|     ++..+++|+.||.|++||++. +.+..+.+|...|.+++|++++  .++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSA-----SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLA  267 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEET-----TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred             ccCCceeEEeccCCCCccEEEEEECC-----CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEE
Confidence            97654221 11223344567777766     456899999999999999864 5667788999999999999865  578


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  335 (500)
                      +|+.|+.|++||+++++...                                                            
T Consensus       268 s~s~d~~v~iwd~~~~~~~~------------------------------------------------------------  287 (435)
T 4e54_B          268 TASVDQTVKIWDLRQVRGKA------------------------------------------------------------  287 (435)
T ss_dssp             EEETTSBCCEEETTTCCSSS------------------------------------------------------------
T ss_pred             EecCcceeeEEecccccccc------------------------------------------------------------
Confidence            89999999999987643110                                                            


Q ss_pred             eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC  415 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  415 (500)
                                      ......+|...|++++|+|+|.+|++|+.||.|++||+.++++...+..|......-       
T Consensus       288 ----------------~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~-------  344 (435)
T 4e54_B          288 ----------------SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH-------  344 (435)
T ss_dssp             ----------------CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS-------
T ss_pred             ----------------eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccc-------
Confidence                            011224688899999999999999999999999999999998887777765421100       


Q ss_pred             ecCCCCceeeeeccccceeeEEcCCCCEEEEEE------------CCCcEEEEECCCccccccc-cCcccCEEEE-EEcC
Q 010816          416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS------------KDSTLKVWDIRTQKLKQDL-PGHADEVFAV-DWSP  481 (500)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s------------~d~~v~iwd~~~~~~~~~~-~~h~~~V~~l-~~s~  481 (500)
                         ..           .....|+|++.++++++            .++.|++||..+++.+..+ .+|...|.++ +|+|
T Consensus       345 ---~~-----------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp  410 (435)
T 4e54_B          345 ---LT-----------PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP  410 (435)
T ss_dssp             ---SC-----------CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT
T ss_pred             ---ce-----------eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC
Confidence               00           00113445555444443            3467999999999887765 4688888887 6999


Q ss_pred             CCCEEEEEeCCCcEEEec
Q 010816          482 DGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       482 dg~~l~s~~~D~~v~iW~  499 (500)
                      +|++|++|+ |++|+||+
T Consensus       411 dg~~lasg~-d~~i~iW~  427 (435)
T 4e54_B          411 MGDTLASAM-GYHILIWS  427 (435)
T ss_dssp             TSSCEEEEC-SSEEEECC
T ss_pred             CCCEEEEEc-CCcEEEEE
Confidence            999999876 78999997

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.3e-40  Score=312.47  Aligned_cols=289  Identities=12%  Similarity=0.103  Sum_probs=218.8

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCC-------cEEEEeCCCCce----------eEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 010816          109 EAVLSVAFSPDGRQLASGSGDT-------TVRLWDLNTQTP----------MFKCTGHKNWVLCIAWSADGKHLVSGSKA  171 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~-------~i~iwd~~~~~~----------~~~~~~h~~~v~~v~~s~~~~~l~s~~~d  171 (500)
                      -||++++|+||+++||+|++|.       .|++|++.....          ...+.+|...|.+++++  ++.+++|+.+
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence            4899999999999999998654       599999875432          13467888999988774  5677777654


Q ss_pred             CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE----EEE-----ecCcccc
Q 010816          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC----VIC-----LSGHTLA  242 (500)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~----~~~-----~~~h~~~  242 (500)
                      +..++|                                     +++.|+.+|+|++.....    ...     ...+...
T Consensus        93 ~~~~l~-------------------------------------s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (365)
T 4h5i_A           93 NSTKIT-------------------------------------QGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDY  135 (365)
T ss_dssp             CHHHHH-------------------------------------HTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCC
T ss_pred             CccEEE-------------------------------------EecCCCcEEEEEecCCCceEEEeeeeceeecCCcccC
Confidence            433322                                     233344455555432211    000     1234456


Q ss_pred             EEEEEeCCCCe-EE--EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816          243 VTCVKWGGDGV-IY--TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (500)
Q Consensus       243 v~~~~~~~~~~-l~--t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (500)
                      +.+++|+|||. ++  +++.|++|++||+.+++.+..+. |...|.+++++|+                           
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspd---------------------------  187 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTD---------------------------  187 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTT---------------------------
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccC---------------------------
Confidence            88999999985 33  45589999999999999888876 6678999999886                           


Q ss_pred             hhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC----cEEEEeCCCCce-
Q 010816          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK----SIKLWNGTTGKF-  394 (500)
Q Consensus       320 ~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg----~i~lwd~~~~~~-  394 (500)
                               +..+++++.++.+.+|.............+|...|.+++|+|+++++++++.|+    .+++|+...+.. 
T Consensus       188 ---------g~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~  258 (365)
T 4h5i_A          188 ---------GKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS  258 (365)
T ss_dssp             ---------SSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE
T ss_pred             ---------CceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec
Confidence                     346788886665555543322222234567888999999999999999999987    688999877653 


Q ss_pred             ---EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc-ccCc
Q 010816          395 ---VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGH  470 (500)
Q Consensus       395 ---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~h  470 (500)
                         ...+.+|..+|+++                           +|+|+|++||+|+.|++|+|||+++++.+.. +.+|
T Consensus       259 ~~~~~~~~~~~~~V~~~---------------------------~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH  311 (365)
T 4h5i_A          259 VLRSKQVTNRFKGITSM---------------------------DVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH  311 (365)
T ss_dssp             EEEEEEEESSCSCEEEE---------------------------EECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred             ceeeeeecCCCCCeEeE---------------------------EECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence               34567888888777                           6799999999999999999999999998876 5899


Q ss_pred             ccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          471 ADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       471 ~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      ...|++|+|||||++|||||.|++||||+.
T Consensus       312 ~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          312 SFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             cCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            999999999999999999999999999973

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.5e-39  Score=300.14  Aligned_cols=247  Identities=24%  Similarity=0.421  Sum_probs=219.2

Q ss_pred             ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEE
Q 010816          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV  265 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~l  265 (500)
                      ..+.+|...|.+++|+|     ++..+++++.||+|++||+.++.++..+.+|..+|.++.|++++ .|++|+.|++|++
T Consensus         7 ~~~~~h~~~V~~~~fsp-----~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHP-----TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             EEEEEECSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             EeecCCCCceEEEEECC-----CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence            35678999999999987     45689999999999999999999999999999999999999876 6899999999999


Q ss_pred             EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816          266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (500)
Q Consensus       266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd  345 (500)
                      ||+.+++.+..+.+|...|.+++++|+                                    ...+++|+.|++|++||
T Consensus        82 wd~~~~~~~~~~~~h~~~v~~~~~~~~------------------------------------~~~l~sgs~D~~v~lWd  125 (304)
T 2ynn_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPT------------------------------------KPYVLSGSDDLTVKLWN  125 (304)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSS------------------------------------SSEEEEEETTSCEEEEE
T ss_pred             EECCCCcEEEEEeCCCCcEEEEEEcCC------------------------------------CCEEEEECCCCeEEEEE
Confidence            999999999999999999999999875                                    34799999999999999


Q ss_pred             CCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceEEEEe-CCcccEEEEEeeeeeeecCCCCce
Q 010816          346 PAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQIRFELIYCFRYPSNFY  423 (500)
Q Consensus       346 ~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~  423 (500)
                      +.........+.+|...|.+++|+| ++.+|++|+.|++|++||+.++.....+. +|...+..+.+             
T Consensus       126 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~-------------  192 (304)
T 2ynn_A          126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY-------------  192 (304)
T ss_dssp             GGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEE-------------
T ss_pred             CCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEE-------------
Confidence            8765555567889999999999999 67999999999999999998877655554 45566665533             


Q ss_pred             eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                                  ...+++.+|++|+.|++|++||+++++++..+.+|...|.+++|+|++++|++|+.|++|++|+
T Consensus       193 ------------~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd  256 (304)
T 2ynn_A          193 ------------YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN  256 (304)
T ss_dssp             ------------CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             ------------EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence                        1135788999999999999999999999999999999999999999999999999999999997

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.5e-40  Score=316.94  Aligned_cols=312  Identities=18%  Similarity=0.287  Sum_probs=243.6

Q ss_pred             ccCCcccEEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCceeEEecC-----CCCCEEEEEEcCC----CCEEEEEeC
Q 010816          104 IAGHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCTG-----HKNWVLCIAWSAD----GKHLVSGSK  170 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~----~~~lat~~~d~~i~iwd~~~~~~~~~~~~-----h~~~v~~v~~s~~----~~~l~s~~~  170 (500)
                      ..+|.++|.+++|+|+    ...+++++.++.|+|||+.++..+..+..     |...|.+++|+|+    +.+|++|+.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            4589999999999994    45677777777999999998776655543     6688999999999    679999999


Q ss_pred             CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe---cCccccEEEEE
Q 010816          171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCVK  247 (500)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~---~~h~~~v~~~~  247 (500)
                      ||.|++||+.+++... .+.+|...|.++.|+|.    +...+++++.||.|++||+++++.+..+   .+|...|.++.
T Consensus        94 dg~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  168 (366)
T 3k26_A           94 RGIIRIINPITMQCIK-HYVGHGNAINELKFHPR----DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD  168 (366)
T ss_dssp             TCEEEEECTTTCCEEE-EEESCCSCEEEEEECSS----CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred             CCEEEEEEchhceEee-eecCCCCcEEEEEECCC----CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence            9999999999887654 46789999999999872    3458999999999999999999998888   78999999999


Q ss_pred             eCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816          248 WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (500)
Q Consensus       248 ~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (500)
                      |++++ .|++++.||.|++||+++++....+...      +.+.++.                                 
T Consensus       169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~~~~---------------------------------  209 (366)
T 3k26_A          169 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES------YDYNPNK---------------------------------  209 (366)
T ss_dssp             ECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH------HTCCGGG---------------------------------
T ss_pred             ECCCCCEEEEecCCCCEEEEECCCCcccccccee------EEecCCC---------------------------------
Confidence            99876 6889999999999999876543322210      0000100                                 


Q ss_pred             CCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce------------
Q 010816          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF------------  394 (500)
Q Consensus       327 ~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~------------  394 (500)
                         ..+...    ....     .........+|...|.+++|+  +++|++++.|+.|++||+.+++.            
T Consensus       210 ---~~~~~~----~~~~-----~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  275 (366)
T 3k26_A          210 ---TNRPFI----SQKI-----HFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNV  275 (366)
T ss_dssp             ---CSSCCC----CEEE-----CCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCE
T ss_pred             ---Cccccc----ceee-----ccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcch
Confidence               000000    0000     011223345688999999998  78999999999999999987654            


Q ss_pred             --EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC--CCEEEEEECCCcEEEEECCCccccc----c
Q 010816          395 --VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD--SRLLLSGSKDSTLKVWDIRTQKLKQ----D  466 (500)
Q Consensus       395 --~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~s~s~d~~v~iwd~~~~~~~~----~  466 (500)
                        +..+.+|...+.++                           +|+|+  +++|++|+.||.|++||+.+++...    .
T Consensus       276 ~~~~~~~~~~~~v~~~---------------------------~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  328 (366)
T 3k26_A          276 TILGRFDYSQCDIWYM---------------------------RFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT  328 (366)
T ss_dssp             EEEEEEECSSCCSSCC---------------------------CCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred             heeccccccCCcEEEE---------------------------EEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence              44555555444333                           56788  9999999999999999999876544    6


Q ss_pred             ccCc--ccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          467 LPGH--ADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       467 ~~~h--~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      +.+|  ...|++++|+|++++|++++.||.|++|+.
T Consensus       329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            7777  789999999999999999999999999973

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-37  Score=295.07  Aligned_cols=281  Identities=22%  Similarity=0.412  Sum_probs=242.2

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce---eEEec--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~---~~~~~--~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      .+|.+.|.+++|+|++++|++++ |+.|++||+.++..   +..+.  +|...|.+++|+|++++|++++.|+.|++||+
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  126 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            37999999999999999999998 99999999987542   23333  79999999999999999999999999999999


Q ss_pred             CCCCc-ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEE
Q 010816          180 QTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (500)
Q Consensus       180 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~  257 (500)
                      .+++. ....+..|...+.++.|.|     ++..+++++.|+.|++||+++++.+..+.+|...|.++.|++++ .++++
T Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  201 (337)
T 1gxr_A          127 AAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG  201 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcceeeecccCCCceEEEEECC-----CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEE
Confidence            88763 2234667888899999977     45689999999999999999999999999999999999999887 68899


Q ss_pred             eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      +.|+.|++||+++++.+..+. +...+.+++++++                                    +..+++++.
T Consensus       202 ~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~------------------------------------~~~l~~~~~  244 (337)
T 1gxr_A          202 GLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPT------------------------------------GEWLAVGME  244 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTT------------------------------------SSEEEEEET
T ss_pred             ecCCcEEEEECCCCceEeeec-CCCceEEEEECCC------------------------------------CCEEEEEcC
Confidence            999999999999998877764 5667888888765                                    357899999


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                      |+.+++||.....  ...+..|...|.+++|+|++++|++++.||.|++||+.+++.+.. ..|...+.++         
T Consensus       245 ~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~---------  312 (337)
T 1gxr_A          245 SSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSC---------  312 (337)
T ss_dssp             TSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEE---------
T ss_pred             CCcEEEEECCCCC--eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEE---------
Confidence            9999999986543  346778999999999999999999999999999999999987744 3466666665         


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                                        +|+|++++|++++.||.|++|++
T Consensus       313 ------------------~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          313 ------------------DISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ------------------EECTTSCEEEEEETTSCEEEEEE
T ss_pred             ------------------EECCCCCEEEEecCCCeEEEEEE
Confidence                              67999999999999999999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.3e-38  Score=305.97  Aligned_cols=329  Identities=18%  Similarity=0.298  Sum_probs=237.5

Q ss_pred             cccccCCcccEEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCceeEEe-------------cCCCCCEEEEEEcC-CCCEE
Q 010816          101 SATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKC-------------TGHKNWVLCIAWSA-DGKHL  165 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~~~~~~~~-------------~~h~~~v~~v~~s~-~~~~l  165 (500)
                      ...+.+|.+.|.+++|+| ++++||+|+.||.|+|||+.++.....+             .+|...|.+++|+| ++.+|
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            345678999999999999 9999999999999999999876554332             25999999999999 77899


Q ss_pred             EEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEE
Q 010816          166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC  245 (500)
Q Consensus       166 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~  245 (500)
                      ++++.|+.|++||+.+++....  ..+...+.++.|.|..  .+...+++++.|+.|++||+++++++..+.+|...|.+
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~  191 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQTADV--FNFEETVYSHHMSPVS--TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA  191 (408)
T ss_dssp             EEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEECSSC--SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred             EEEeCCCeEEEeeCCCCcccee--ccCCCceeeeEeecCC--CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence            9999999999999998765432  2356778888887743  24458999999999999999999999999999999999


Q ss_pred             EEeCCCC--eEEEEeCCCeEEEEeCCCCe-eEEEe---------------ecCCceEEEEEecCcceeeeccccCCCCCC
Q 010816          246 VKWGGDG--VIYTGSQDCTIKVWETTQGK-LIREL---------------KGHGHWVNSLALSTEYALRTGAFDHTGKQY  307 (500)
Q Consensus       246 ~~~~~~~--~l~t~~~dg~i~lwd~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  307 (500)
                      ++|++++  .+++|+.||.|++||++++. .+..+               ..|...|.+++++++               
T Consensus       192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------  256 (408)
T 4a11_B          192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD---------------  256 (408)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT---------------
T ss_pred             EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC---------------
Confidence            9999987  48899999999999998765 33433               456777888888764               


Q ss_pred             CCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee----ecccCcEEEEEECCCCCEEEEEeCCCc
Q 010816          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNHVYFSPDGQWVASASFDKS  383 (500)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~----~~h~~~v~~l~~sp~g~~lasgs~Dg~  383 (500)
                                           +..+++++.|+.|++||+..........    ......+........+..+++++.|+.
T Consensus       257 ---------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (408)
T 4a11_B          257 ---------------------GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST  315 (408)
T ss_dssp             ---------------------SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTE
T ss_pred             ---------------------CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCE
Confidence                                 3579999999999999987544321111    011111222222334566777789999


Q ss_pred             EEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc
Q 010816          384 IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL  463 (500)
Q Consensus       384 i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~  463 (500)
                      |++||+.+++.+..+.+|.+.|.++                           +|+|++++|++|+.||.|++||+++++.
T Consensus       316 i~v~d~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          316 IAVYTVYSGEQITMLKGHYKTVDCC---------------------------VFQSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEE---------------------------EEETTTTEEEEEETTSCEEEEEECC---
T ss_pred             EEEEECcCCcceeeeccCCCeEEEE---------------------------EEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence            9999999999999999999999887                           5699999999999999999999999877


Q ss_pred             cccccCcccCEEEEEEcC-CCCEEEEEeCCCcEEEec
Q 010816          464 KQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       464 ~~~~~~h~~~V~~l~~s~-dg~~l~s~~~D~~v~iW~  499 (500)
                      +.....+..   ...+.+ +...+.+++.|+.+++|.
T Consensus       369 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          369 VPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             -------------------------------------
T ss_pred             cCCCCceEe---ccccccccceeecccCccCceeecC
Confidence            655443322   122333 334556788899999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.4e-38  Score=297.67  Aligned_cols=246  Identities=24%  Similarity=0.431  Sum_probs=216.4

Q ss_pred             eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc
Q 010816          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (500)
Q Consensus       142 ~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~  221 (500)
                      ....+.+|.+.|.+++|+|++++|++|+.||+|++||..+++... .+..|...|.++.|+|     ++..+++|+.|+.
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~s~~~d~~  120 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAP-----SGNYVACGGLDNI  120 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE-EEECSSSCEEEEEECT-----TSSEEEEEETTCE
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce-EeecCCccEEEEEECC-----CCCEEEEEeCCCe
Confidence            445788999999999999999999999999999999998887543 4667888999999987     4568999999999


Q ss_pred             EEEEECCCC----eEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeee
Q 010816          222 ARIWDVSLR----KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT  297 (500)
Q Consensus       222 v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  297 (500)
                      +++||+.+.    .....+.+|...|.++.|.+++.+++++.|++|++||+.+++.+..                     
T Consensus       121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~---------------------  179 (340)
T 1got_B          121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT---------------------  179 (340)
T ss_dssp             EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE---------------------
T ss_pred             EEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEE---------------------
Confidence            999999765    4566788999999999999999999999999999999987654332                     


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEE
Q 010816          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS  377 (500)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~las  377 (500)
                                                                                +.+|...|.+++|+|++++|++
T Consensus       180 ----------------------------------------------------------~~~h~~~v~~~~~~~~~~~l~s  201 (340)
T 1got_B          180 ----------------------------------------------------------FTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             ----------------------------------------------------------ECCCSSCEEEEEECTTSSEEEE
T ss_pred             ----------------------------------------------------------EcCCCCceEEEEECCCCCEEEE
Confidence                                                                      2356777999999999999999


Q ss_pred             EeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816          378 ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD  457 (500)
Q Consensus       378 gs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd  457 (500)
                      |+.|+.|++||+++++++..+.+|...|.++                           +|+|++.+|++|+.|++|++||
T Consensus       202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v---------------------------~~~p~~~~l~s~s~d~~v~iwd  254 (340)
T 1got_B          202 GACDASAKLWDVREGMCRQTFTGHESDINAI---------------------------CFFPNGNAFATGSDDATCRLFD  254 (340)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEE---------------------------EECTTSSEEEEEETTSCEEEEE
T ss_pred             EeCCCcEEEEECCCCeeEEEEcCCcCCEEEE---------------------------EEcCCCCEEEEEcCCCcEEEEE
Confidence            9999999999999999999999999999887                           5699999999999999999999


Q ss_pred             CCCcccccccc--CcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          458 IRTQKLKQDLP--GHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       458 ~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +++++....+.  .+...|.+++|+|+|++|++|+.|+.|++|+
T Consensus       255 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd  298 (340)
T 1got_B          255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence            99877665543  3345799999999999999999999999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-38  Score=308.79  Aligned_cols=298  Identities=20%  Similarity=0.346  Sum_probs=244.3

Q ss_pred             cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeC----CCCCc------cc---ccccC-----
Q 010816          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDP----QTGKP------SG---NPLSG-----  191 (500)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~~wd~----~~~~~------~~---~~~~~-----  191 (500)
                      .+.+|++...........|.+.|.+++|+|+++ +|++|+.|+.|++||+    .+++.      ..   ..+.+     
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (425)
T 1r5m_A           26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG  105 (425)
T ss_dssp             --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred             ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence            456788876666655566789999999999999 9999999999999999    87762      11   12222     


Q ss_pred             -cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCC
Q 010816          192 -HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT  269 (500)
Q Consensus       192 -~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~  269 (500)
                       |...|.++.|+|     ++..+++++.||.|++|| ..++.+..+.+|...|.++.|++++ .|++++.|+.|++||+.
T Consensus       106 ~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          106 KTTNQVTCLAWSH-----DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             --CBCEEEEEECT-----TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             CCCCceEEEEEcC-----CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence             677999999987     456899999999999999 6778888899999999999999887 58899999999999999


Q ss_pred             CCeeEEEeecCCce---------------EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816          270 QGKLIRELKGHGHW---------------VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (500)
Q Consensus       270 ~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (500)
                      +++.+..+..+...               +.++.+++                                     ...+++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~  222 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-------------------------------------DDKFVI  222 (425)
T ss_dssp             TTEEEEEECCC---------------CCCBSCCEEEE-------------------------------------TTEEEE
T ss_pred             CCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-------------------------------------CCEEEE
Confidence            99988887766544               33333322                                     346899


Q ss_pred             eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeee
Q 010816          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY  414 (500)
Q Consensus       335 ~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~  414 (500)
                      ++.|+.|++||+... .....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...+.++      
T Consensus       223 ~~~~g~i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~------  295 (425)
T 1r5m_A          223 PGPKGAIFVYQITEK-TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA------  295 (425)
T ss_dssp             ECGGGCEEEEETTCS-SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEE------
T ss_pred             EcCCCeEEEEEcCCC-ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEE------
Confidence            999999999998754 3455677899999999999999999999999999999999999999999999988877      


Q ss_pred             eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV  494 (500)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~  494 (500)
                                           +|+|++ ++++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.
T Consensus       296 ---------------------~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  353 (425)
T 1r5m_A          296 ---------------------SWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ  353 (425)
T ss_dssp             ---------------------EEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             ---------------------EECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence                                 568999 9999999999999999999998889999999999999999999999999999


Q ss_pred             EEEecC
Q 010816          495 LKLWMG  500 (500)
Q Consensus       495 v~iW~~  500 (500)
                      |++|+.
T Consensus       354 i~i~~~  359 (425)
T 1r5m_A          354 VNVYDL  359 (425)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999973

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.4e-40  Score=316.91  Aligned_cols=299  Identities=14%  Similarity=0.216  Sum_probs=228.7

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      .|.++|.+++|+|++++||+|+.|+.|+|||+.++  .++..+.+|...|.+++|+|++++|++++.|++|++||+.+++
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~   88 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG   88 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            36779999999999999999999999999999987  6677788999999999999999999999999999999998876


Q ss_pred             --cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe---EEEEecC-ccccEEEEEeCCCC-eEEE
Q 010816          184 --PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSG-HTLAVTCVKWGGDG-VIYT  256 (500)
Q Consensus       184 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---~~~~~~~-h~~~v~~~~~~~~~-~l~t  256 (500)
                        .....+.+|...|.++.|+|     ++..+++++.|+.|++||++.++   +...+.+ |...|.+++|++++ .|++
T Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~  163 (377)
T 3dwl_C           89 TWKQTLVLLRLNRAATFVRWSP-----NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA  163 (377)
T ss_dssp             CCCCEEECCCCSSCEEEEECCT-----TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred             ceeeeeEecccCCceEEEEECC-----CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence              11234678999999999987     45689999999999999999877   4667777 99999999999986 6889


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                      ++.|+.|++||+..+.........                                                        
T Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------------------------------  187 (377)
T 3dwl_C          164 GCADRKAYVLSAYVRDVDAKPEAS--------------------------------------------------------  187 (377)
T ss_dssp             EESSSCEEEEEECCSSCC-CCCSC--------------------------------------------------------
T ss_pred             EeCCCEEEEEEEEecccCCCcccc--------------------------------------------------------
Confidence            999999999998754321100000                                                        


Q ss_pred             CCCeEEEEcCCC-CCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce----EEEEeCCcccEEEEEee
Q 010816          337 DDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQIRFE  411 (500)
Q Consensus       337 ~d~~v~~wd~~~-~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~----~~~~~~h~~~v~~~~~~  411 (500)
                            .|.... .......+ +|...|.+++|+|+|++|++++.||.|++||+.+++.    +..+.+|..++.++   
T Consensus       188 ------~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~---  257 (377)
T 3dwl_C          188 ------VWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSL---  257 (377)
T ss_dssp             ------SSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEE---
T ss_pred             ------ccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEE---
Confidence                  000000 00111223 7889999999999999999999999999999999987    77888999988887   


Q ss_pred             eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc--cc-------------------------
Q 010816          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK--LK-------------------------  464 (500)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~--~~-------------------------  464 (500)
                                              +|+|++++|++|+.|+.+ +|+.....  ..                         
T Consensus       258 ------------------------~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (377)
T 3dwl_C          258 ------------------------LWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEE  312 (377)
T ss_dssp             ------------------------EEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-
T ss_pred             ------------------------EEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccc
Confidence                                    568999999999877766 66654211  00                         


Q ss_pred             -------------------------ccccCcccCEEEEEEcCCC-C---EEEEEeCCCcEEEecC
Q 010816          465 -------------------------QDLPGHADEVFAVDWSPDG-E---KVASGGKDRVLKLWMG  500 (500)
Q Consensus       465 -------------------------~~~~~h~~~V~~l~~s~dg-~---~l~s~~~D~~v~iW~~  500 (500)
                                               .....|.+.|+++.+.+++ .   .|+|||.||+|++|+.
T Consensus       313 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                                     0112399999999976543 3   6999999999999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.1e-37  Score=302.58  Aligned_cols=277  Identities=29%  Similarity=0.517  Sum_probs=231.2

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      +..|+|+++ +.||+|. |++|+|||..+++....+  .+|...|++|+|+|+|++|++|+.||+|++||+++++... .
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~-~  184 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-N  184 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-E
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE-E
Confidence            567999975 5777765 999999999999876544  5788899999999999999999999999999999987654 4


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-eEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEE
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW  266 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lw  266 (500)
                      +.+|...+.++.|++       ..+++|+.|+.+++||.... ..+..+.+|...+..+.|.+++ .+++++.|+.+++|
T Consensus       185 ~~~h~~~v~~~s~~~-------~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~  257 (420)
T 4gga_A          185 MTSHSARVGSLSWNS-------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW  257 (420)
T ss_dssp             ECCCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EeCCCCceEEEeeCC-------CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence            678999999988854       57999999999999998864 4567788999999999999876 58889999999999


Q ss_pred             eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (500)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~  346 (500)
                      |..+++..                                                                        
T Consensus       258 ~~~~~~~~------------------------------------------------------------------------  265 (420)
T 4gga_A          258 PSAPGEGG------------------------------------------------------------------------  265 (420)
T ss_dssp             ESSCCSSC------------------------------------------------------------------------
T ss_pred             eecccccc------------------------------------------------------------------------
Confidence            98764311                                                                        


Q ss_pred             CCCCCCceeeecccCcEEEEEECCCC-CEEEE--EeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816          347 AVSKQPKTRMTGHQQLVNHVYFSPDG-QWVAS--ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY  423 (500)
Q Consensus       347 ~~~~~~~~~~~~h~~~v~~l~~sp~g-~~las--gs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  423 (500)
                         .........|...|.+++|+|++ .++++  |+.|++|++||+.+++++..+..|.. +.++               
T Consensus       266 ---~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~-v~~~---------------  326 (420)
T 4gga_A          266 ---WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSI---------------  326 (420)
T ss_dssp             ---SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC-EEEE---------------
T ss_pred             ---ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc-eeee---------------
Confidence               01122344677889999999965 56655  45799999999999999888776643 3333               


Q ss_pred             eeeeccccceeeEEcCCCCEEEEEE--CCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          424 CVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       424 ~~~~~~~~~~~~~~s~~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                                  .|+|+++.+++++  .|+.|+|||+.+++.+..+.+|.+.|++++|+|||++|+|||.|++|+||+.
T Consensus       327 ------------~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          327 ------------LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             ------------EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             ------------eecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence                        5689999888765  7999999999999999999999999999999999999999999999999973

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.6e-38  Score=305.81  Aligned_cols=310  Identities=19%  Similarity=0.272  Sum_probs=253.8

Q ss_pred             CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCcccccc------------cCccc
Q 010816          128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPL------------SGHKK  194 (500)
Q Consensus       128 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------------~~~~~  194 (500)
                      .++.+++|+++.......+.+|.+.|.+++|+| ++++|++|+.||.|++||+.+++......            .+|..
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY  100 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred             ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence            355688898888888888889999999999999 99999999999999999999876543221            36999


Q ss_pred             ceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC----eEEEEeCCCeEEEEeCCC
Q 010816          195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG----VIYTGSQDCTIKVWETTQ  270 (500)
Q Consensus       195 ~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~----~l~t~~~dg~i~lwd~~~  270 (500)
                      .|.++.|.|.    +...+++++.|+.|++||+.+++....+. +...+.++.|.+.+    .+++++.|+.|++||+.+
T Consensus       101 ~v~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B          101 SVETVQWYPH----DTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             CEEEEEECTT----CTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             cEEEEEEccC----CCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            9999999873    33579999999999999999998887765 67788899887643    689999999999999999


Q ss_pred             CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC
Q 010816          271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (500)
Q Consensus       271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~  350 (500)
                      ++.+..+..|...|.+++++++.                                   ...+++++.|+.|++||++...
T Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~ll~~~~~dg~i~i~d~~~~~  220 (408)
T 4a11_B          176 GSCSHILQGHRQEILAVSWSPRY-----------------------------------DYILATASADSRVKLWDVRRAS  220 (408)
T ss_dssp             SCCCEEECCCCSCEEEEEECSSC-----------------------------------TTEEEEEETTSCEEEEETTCSS
T ss_pred             cceeeeecCCCCcEEEEEECCCC-----------------------------------CcEEEEEcCCCcEEEEECCCCC
Confidence            99999999999999999998752                                   2258899999999999987654


Q ss_pred             CCceee---------------ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816          351 QPKTRM---------------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC  415 (500)
Q Consensus       351 ~~~~~~---------------~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  415 (500)
                      .....+               .+|...|.+++|+|++++|++++.||.|++||+.+++....+.++.....         
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---------  291 (408)
T 4a11_B          221 GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS---------  291 (408)
T ss_dssp             CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCC---------
T ss_pred             cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccc---------
Confidence            333332               57889999999999999999999999999999999876544333221100         


Q ss_pred             ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 010816          416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL  495 (500)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v  495 (500)
                                   ............+..+++++.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|
T Consensus       292 -------------~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  358 (408)
T 4a11_B          292 -------------KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNI  358 (408)
T ss_dssp             -------------SSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             -------------cccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeE
Confidence                         0000000112345567777889999999999999999999999999999999999999999999999


Q ss_pred             EEec
Q 010816          496 KLWM  499 (500)
Q Consensus       496 ~iW~  499 (500)
                      ++|+
T Consensus       359 ~iw~  362 (408)
T 4a11_B          359 LAWV  362 (408)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9997

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-38  Score=302.39  Aligned_cols=275  Identities=15%  Similarity=0.186  Sum_probs=237.4

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc---eeEEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeC
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDP  179 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~~wd~  179 (500)
                      ..+|.+.|.+++|+|++++|++++.|+.|+|||+.++.   +.....+|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            45899999999999999999999999999999998776   3445568999999999999999 9999999999999999


Q ss_pred             -CCCCcccccccC--cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC---------CeEEEEecCccccEEEEE
Q 010816          180 -QTGKPSGNPLSG--HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---------RKCVICLSGHTLAVTCVK  247 (500)
Q Consensus       180 -~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~---------~~~~~~~~~h~~~v~~~~  247 (500)
                       .+++.  ..+.+  |...|.++.|.|      ...+++++.|+.|++||++.         ++++..+. |...|.++.
T Consensus        87 ~~~~~~--~~~~~~~~~~~v~~l~~~~------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  157 (342)
T 1yfq_A           87 IGSPSF--QALTNNEANLGICRICKYG------DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD  157 (342)
T ss_dssp             SSSSSE--EECBSCCCCSCEEEEEEET------TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred             ccCCce--EeccccCCCCceEEEEeCC------CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence             87754  34667  999999999987      25899999999999999987         66665555 888999999


Q ss_pred             eCCCCeEEEEeCCCeEEEEeCCC-CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816          248 WGGDGVIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (500)
Q Consensus       248 ~~~~~~l~t~~~dg~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (500)
                      |++++ +++++.|+.|++||+++ +...                                                    
T Consensus       158 ~~~~~-l~~~~~d~~i~i~d~~~~~~~~----------------------------------------------------  184 (342)
T 1yfq_A          158 TNSSR-LIVGMNNSQVQWFRLPLCEDDN----------------------------------------------------  184 (342)
T ss_dssp             ECSSE-EEEEESTTEEEEEESSCCTTCC----------------------------------------------------
T ss_pred             ecCCc-EEEEeCCCeEEEEECCcccccc----------------------------------------------------
Confidence            99887 88999999999999875 3210                                                    


Q ss_pred             CCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCC------ceEEEEe
Q 010816          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG------KFVAVFR  399 (500)
Q Consensus       327 ~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~------~~~~~~~  399 (500)
                                               .......|...+.+++|+| ++++|++++.||.|++|++...      +....++
T Consensus       185 -------------------------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  239 (342)
T 1yfq_A          185 -------------------------GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             -------------------------CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             -------------------------ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence                                     0011224556789999999 9999999999999999999887      7778888


Q ss_pred             CCcc---------cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCc
Q 010816          400 GHVG---------PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH  470 (500)
Q Consensus       400 ~h~~---------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h  470 (500)
                      +|..         ++.++                           +|+|++++|++|+.||.|++||+.+++.+..+.+|
T Consensus       240 ~~~~~~~~~~~~~~i~~~---------------------------~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          240 CHRLNLKDTNLAYPVNSI---------------------------EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEE---------------------------EECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             cccccccccccceeEEEE---------------------------EEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence            8765         66665                           67999999999999999999999999999999998


Q ss_pred             -ccCEEEEEEcCCCCEEEEEeCCCc
Q 010816          471 -ADEVFAVDWSPDGEKVASGGKDRV  494 (500)
Q Consensus       471 -~~~V~~l~~s~dg~~l~s~~~D~~  494 (500)
                       ...|.+++  |++++|++++.|++
T Consensus       293 h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          293 NEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             SSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             cCCCceEec--CCCCeEEEEecCCc
Confidence             99999999  99999999999998

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.6e-37  Score=293.46  Aligned_cols=273  Identities=22%  Similarity=0.362  Sum_probs=229.0

Q ss_pred             CeeeEEEEEEeecc----------eEeEEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----
Q 010816           77 SVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----  140 (500)
Q Consensus        77 ~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~----  140 (500)
                      +...+..+.+.|..          ..+++..  ......+..|...|.+++|+|++.+||+|+.|+.+++|++...    
T Consensus        63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~  142 (354)
T 2pbi_B           63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN  142 (354)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC
T ss_pred             CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc
Confidence            34456677776643          3445543  2344566789999999999999999999999999999998643    


Q ss_pred             --ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeC
Q 010816          141 --TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (500)
Q Consensus       141 --~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~  218 (500)
                        .....+.+|...|.+++|+|++..|++++.|++|++||+++++... .+.+|...|.++.|.|.   .++..|++|+.
T Consensus       143 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~---~~g~~l~sgs~  218 (354)
T 2pbi_B          143 MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ-SFHGHGADVLCLDLAPS---ETGNTFVSGGC  218 (354)
T ss_dssp             SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECCC---SSCCEEEEEET
T ss_pred             ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEcCCCCCeEEEEEEeC---CCCCEEEEEeC
Confidence              2345667899999999999999999999999999999999887643 56789999999998763   23468999999


Q ss_pred             CCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeee
Q 010816          219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT  297 (500)
Q Consensus       219 dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  297 (500)
                      ||.|++||+++++++..+.+|...|.+++|+|++ .|++|+.|++|++||+++++.+..+..                  
T Consensus       219 Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~------------------  280 (354)
T 2pbi_B          219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK------------------  280 (354)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------------------
T ss_pred             CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC------------------
Confidence            9999999999999999999999999999999876 688999999999999987654322110                  


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEE
Q 010816          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS  377 (500)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~las  377 (500)
                                                                                 ..+...+.+++|+|+|++|++
T Consensus       281 -----------------------------------------------------------~~~~~~~~~~~~s~~g~~l~~  301 (354)
T 2pbi_B          281 -----------------------------------------------------------ESIIFGASSVDFSLSGRLLFA  301 (354)
T ss_dssp             -----------------------------------------------------------TTCCSCEEEEEECTTSSEEEE
T ss_pred             -----------------------------------------------------------CCcccceeEEEEeCCCCEEEE
Confidence                                                                       011234788999999999999


Q ss_pred             EeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816          378 ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD  457 (500)
Q Consensus       378 gs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd  457 (500)
                      |+.|+.|++||+.+++.+..+.+|.++|.++                           +|+|+|++|++|+.|++|+||+
T Consensus       302 g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l---------------------------~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          302 GYNDYTINVWDVLKGSRVSILFGHENRVSTL---------------------------RVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEE---------------------------EECTTSSCEEEEETTSEEEEEC
T ss_pred             EECCCcEEEEECCCCceEEEEECCCCcEEEE---------------------------EECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999999999999999888                           5699999999999999999995

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-39  Score=314.56  Aligned_cols=317  Identities=17%  Similarity=0.267  Sum_probs=246.4

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC----CceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeC
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----QTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~----~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~  179 (500)
                      .+|...|.+++|+|++++||+|+.|+.|++||+.+    ...+..+.+|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            36899999999999999999999999999999987    4577788899999999999998 899999999999999999


Q ss_pred             CCCC------ccc--ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc------cccEEE
Q 010816          180 QTGK------PSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH------TLAVTC  245 (500)
Q Consensus       180 ~~~~------~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h------~~~v~~  245 (500)
                      .+++      ...  ....+|...|.++.|+|..    ...+++++.|+.|++||+++++++..+..|      ...|.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL----AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV  219 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC----TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCC----CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence            8876      222  1246788999999998731    358999999999999999999998888776      789999


Q ss_pred             EEeCCCC--eEEEEeCCC---eEEEEeCCCC-eeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816          246 VKWGGDG--VIYTGSQDC---TIKVWETTQG-KLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (500)
Q Consensus       246 ~~~~~~~--~l~t~~~dg---~i~lwd~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (500)
                      ++|++++  .+++++.|+   .|++||++++ ..+..+. .|...|.++++++.                          
T Consensus       220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------------  273 (416)
T 2pm9_A          220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ--------------------------  273 (416)
T ss_dssp             EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS--------------------------
T ss_pred             EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC--------------------------
Confidence            9999986  688999998   9999999986 5667777 89999999998872                          


Q ss_pred             HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEE
Q 010816          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAV  397 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~  397 (500)
                               .+..+++++.|+.|++||+... .....+.+|...|.+++|+|++ .+|++++.|+.|++||+.++.....
T Consensus       274 ---------~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~  343 (416)
T 2pm9_A          274 ---------DEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD  343 (416)
T ss_dssp             ---------CSSCEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred             ---------CCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence                     1346899999999999998654 4456678999999999999999 8999999999999999987654221


Q ss_pred             EeC--CcccEEEEE-eeeee----eecCCC-CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc
Q 010816          398 FRG--HVGPVYQIR-FELIY----CFRYPS-NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ  461 (500)
Q Consensus       398 ~~~--h~~~v~~~~-~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~  461 (500)
                      ...  ......... +....    ..+... ...........+..++|+|+|++|++|+.|+.|+||++.+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          344 EQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             C----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             cccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence            111  000000000 00000    000000 00000001223445689999999999999999999998763

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.2e-39  Score=299.66  Aligned_cols=253  Identities=21%  Similarity=0.369  Sum_probs=207.5

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~~wd  178 (500)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.  .+..+.+|.+.|.+++|++  ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            467999999999999999999999999999999998764  4567889999999999986  489999999999999999


Q ss_pred             CCCCCc-ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE---EEEecCccccEEEEEeCCC---
Q 010816          179 PQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGD---  251 (500)
Q Consensus       179 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~---  251 (500)
                      +++++. ....+.+|...|.+++|+|..   .+..+++|+.|++|++||++.+..   ...+.+|...|.++.|+++   
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~---~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHD---YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTT---TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCC---CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            988742 223467899999999998742   245899999999999999987532   3456789999999999886   


Q ss_pred             ---------------CeEEEEeCCCeEEEEeCCCC---eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHH
Q 010816          252 ---------------GVIYTGSQDCTIKVWETTQG---KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM  313 (500)
Q Consensus       252 ---------------~~l~t~~~dg~i~lwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (500)
                                     ..|++|+.|++|++||++.+   +.+..+.+|..+|.+++++|+..                   
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~-------------------  225 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG-------------------  225 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS-------------------
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC-------------------
Confidence                           36899999999999999755   45677889999999999987521                   


Q ss_pred             HHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC---CCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816          314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS---KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (500)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~---~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~  390 (500)
                                   .....+++++.|++|++|++...   ......+.+|...|.+++|+|+|++||+++.|+.|++|+..
T Consensus       226 -------------~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          226 -------------LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             -------------CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             -------------CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence                         01357999999999999997652   11234467789999999999999999999999999999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.1e-37  Score=306.10  Aligned_cols=270  Identities=30%  Similarity=0.560  Sum_probs=235.7

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~  184 (500)
                      .+|...|.+++|  ++++|++|+.||+|++||+.+++....+.+|...|.+++|  ++++|++|+.||+|++||+.+++.
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            467788999887  8999999999999999999999999999999999999999  788999999999999999999876


Q ss_pred             ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEE---EEecCccccEEEEEeCCCCeEEEEeCCC
Q 010816          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV---ICLSGHTLAVTCVKWGGDGVIYTGSQDC  261 (500)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~l~t~~~dg  261 (500)
                      .. .+.+|...|.++.|++       ..+++|+.||.|++||++++...   ..+.+|...|.++.|. ...+++|+.||
T Consensus       206 ~~-~~~~h~~~v~~l~~~~-------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg  276 (435)
T 1p22_A          206 LN-TLIHHCEAVLHLRFNN-------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDR  276 (435)
T ss_dssp             EE-EECCCCSCEEEEECCT-------TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-TTEEEEEETTS
T ss_pred             EE-EEcCCCCcEEEEEEcC-------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC-CCEEEEEeCCC
Confidence            54 4678999999999853       48999999999999999887654   6678999999999994 45889999999


Q ss_pred             eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (500)
Q Consensus       262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v  341 (500)
                      .|++||+++++.+..+                                                                
T Consensus       277 ~i~vwd~~~~~~~~~~----------------------------------------------------------------  292 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTL----------------------------------------------------------------  292 (435)
T ss_dssp             EEEEEETTTCCEEEEE----------------------------------------------------------------
T ss_pred             eEEEEECCcCcEEEEE----------------------------------------------------------------
Confidence            9999998876554332                                                                


Q ss_pred             EEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCC
Q 010816          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN  421 (500)
Q Consensus       342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  421 (500)
                                     .+|...|.+++|  ++++|++|+.||.|++||+.+++++..+.+|...+.++.            
T Consensus       293 ---------------~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~------------  343 (435)
T 1p22_A          293 ---------------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR------------  343 (435)
T ss_dssp             ---------------ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE------------
T ss_pred             ---------------cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEE------------
Confidence                           245556777777  478999999999999999999999999999999988773            


Q ss_pred             ceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc---------ccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK---------LKQDLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       422 ~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                                     |  ++.+|++|+.||.|++||+++++         ....+.+|.+.|++++|  ++++|++|+.|
T Consensus       344 ---------------~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~D  404 (435)
T 1p22_A          344 ---------------F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD  404 (435)
T ss_dssp             ---------------C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS
T ss_pred             ---------------e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCC
Confidence                           2  78899999999999999997765         66778899999999999  77899999999


Q ss_pred             CcEEEec
Q 010816          493 RVLKLWM  499 (500)
Q Consensus       493 ~~v~iW~  499 (500)
                      |+|++|+
T Consensus       405 g~i~iwd  411 (435)
T 1p22_A          405 DTILIWD  411 (435)
T ss_dssp             SEEEEEC
T ss_pred             CEEEEEE
Confidence            9999997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.5e-37  Score=290.33  Aligned_cols=259  Identities=24%  Similarity=0.429  Sum_probs=211.5

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      ...+.+|...|.+++|+|++++|++|+.|++|+|||+.+++++..+.+|...|.+++|+|++.+|++|+.|++|++||++
T Consensus        58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~  137 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK  137 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             CCCcccccccCcccceEEEEeeeeecC-CCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLN-APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~  258 (500)
                      .. .. ..+.+|...|.++.|.|.... .+...+++++.|+.|++||++..+....+.+|...|.+++|++++ .|++|+
T Consensus       138 ~~-~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~  215 (319)
T 3frx_A          138 GQ-CL-ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG  215 (319)
T ss_dssp             SC-EE-EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred             CC-eE-EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe
Confidence            43 22 346789999999999875321 234579999999999999999999999999999999999999987 588999


Q ss_pred             CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      .|++|++||+.+++.+..+.                                                            
T Consensus       216 ~dg~i~iwd~~~~~~~~~~~------------------------------------------------------------  235 (319)
T 3frx_A          216 KDGEIMLWNLAAKKAMYTLS------------------------------------------------------------  235 (319)
T ss_dssp             TTCEEEEEETTTTEEEEEEE------------------------------------------------------------
T ss_pred             CCCeEEEEECCCCcEEEEec------------------------------------------------------------
Confidence            99999999998765443221                                                            


Q ss_pred             CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY  418 (500)
Q Consensus       339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  418 (500)
                                          +...|.+++|+|++.+|++++.+ .+++|++..+..+..++.+....             
T Consensus       236 --------------------~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~-------------  281 (319)
T 3frx_A          236 --------------------AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGY-------------  281 (319)
T ss_dssp             --------------------CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTC-------------
T ss_pred             --------------------CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccc-------------
Confidence                                12357899999999999988765 59999998877766554321100             


Q ss_pred             CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc
Q 010816          419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ  461 (500)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~  461 (500)
                            .......+..++|+|+|++|++|+.|+.|+|||+.+.
T Consensus       282 ------~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          282 ------SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             ------CGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             ------ccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence                  0000111233478999999999999999999998653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-37  Score=301.25  Aligned_cols=292  Identities=19%  Similarity=0.345  Sum_probs=240.1

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG  182 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~  182 (500)
                      ..+|.+.+....+++++..+++++.|+.|++||+.++.....+.. |...|.+++|+|++++|++|+.||.|++||+.++
T Consensus        87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  166 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ  166 (401)
T ss_dssp             CTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence            346776654444444456789999999999999999887766654 8899999999999999999999999999999988


Q ss_pred             CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-CCeEEEEecCccccEEEEEeCCCC-eEEEEeCC
Q 010816          183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD  260 (500)
Q Consensus       183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~d  260 (500)
                      +... .+.+|...|.++.|.+       ..+++|+.||.|++||++ ....+..+.+|...|.++.|++++ .|++|+.|
T Consensus       167 ~~~~-~~~~~~~~v~~~~~~~-------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  238 (401)
T 4aez_A          167 TKLR-TMAGHQARVGCLSWNR-------HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND  238 (401)
T ss_dssp             CEEE-EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEE-EecCCCCceEEEEECC-------CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence            7554 4668999999999953       489999999999999998 567788889999999999999886 68899999


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee--CC
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS--DD  338 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s--~d  338 (500)
                      +.|++||+++++.+..+..|...|.+++++++.                                   ...+++++  .|
T Consensus       239 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~-----------------------------------~~ll~~~~gs~d  283 (401)
T 4aez_A          239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ-----------------------------------SNLLATGGGTMD  283 (401)
T ss_dssp             SCEEEEETTCSSEEEEECCCSSCCCEEEECTTS-----------------------------------TTEEEEECCTTT
T ss_pred             CeEEEccCCCCCccEEecCCcceEEEEEECCCC-----------------------------------CCEEEEecCCCC
Confidence            999999999999999999999999999998752                                   24567755  79


Q ss_pred             CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE--eCCCcEEEEeCCCCceEE--EEeCCcccEEEEEeeeee
Q 010816          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA--SFDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFELIY  414 (500)
Q Consensus       339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg--s~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~~  414 (500)
                      +.|++||...... ...+ .+...|.+++|+|++++|+++  +.||.|++||+.+++...  .+.+|.+.|.++      
T Consensus       284 ~~i~i~d~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~------  355 (401)
T 4aez_A          284 KQIHFWNAATGAR-VNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS------  355 (401)
T ss_dssp             CEEEEEETTTCCE-EEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEE------
T ss_pred             CEEEEEECCCCCE-EEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEE------
Confidence            9999999875432 2233 466789999999999999994  489999999999876654  466888877766      


Q ss_pred             eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc
Q 010816          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL  467 (500)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~  467 (500)
                                           +|+|+|++|++++.||.|++||+.+++.+...
T Consensus       356 ---------------------~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          356 ---------------------ALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             ---------------------EECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             ---------------------EECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence                                 67999999999999999999999988776543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.5e-38  Score=311.80  Aligned_cols=306  Identities=15%  Similarity=0.291  Sum_probs=232.9

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc-----------eeEEecCCC------------CCEEEEEEcCCC
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHK------------NWVLCIAWSADG  162 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~-----------~~~~~~~h~------------~~v~~v~~s~~~  162 (500)
                      .|.+.|.+++|+|+|++||+|+.||.|+|||+.++.           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            468899999999999999999999999999998766           466788998            889999999998


Q ss_pred             --CEEEEEeCCCeEEEEeCCCCCcc---------------------------------------cccccCcccceEEEEe
Q 010816          163 --KHLVSGSKAGELQCWDPQTGKPS---------------------------------------GNPLSGHKKWITGISW  201 (500)
Q Consensus       163 --~~l~s~~~d~~i~~wd~~~~~~~---------------------------------------~~~~~~~~~~v~~~~~  201 (500)
                        .+|++++.|++|++||+.+++..                                       .....+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998653321                                       0114679999999999


Q ss_pred             eeeecCCCCceEEEEeCCCcEEEEECCC-CeEEE-------EecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCC
Q 010816          202 EPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVI-------CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG  271 (500)
Q Consensus       202 ~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~  271 (500)
                      +|     ++..+++| .|+.|++||++. ++++.       .+.+|...|.+++|++++  .|++|+.||.|++||++++
T Consensus       186 ~~-----~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  259 (447)
T 3dw8_B          186 NS-----DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS  259 (447)
T ss_dssp             CT-----TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred             cC-----CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence            87     44678888 899999999984 44444       256899999999999985  7999999999999999887


Q ss_pred             ee----EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816          272 KL----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (500)
Q Consensus       272 ~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~  347 (500)
                      +.    +..+..|..+                                                                
T Consensus       260 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  275 (447)
T 3dw8_B          260 ALCDRHSKLFEEPEDP----------------------------------------------------------------  275 (447)
T ss_dssp             SSSCTTCEEECCC-------------------------------------------------------------------
T ss_pred             ccccceeeEeccCCCc----------------------------------------------------------------
Confidence            64    3333222110                                                                


Q ss_pred             CCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-CceEEEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (500)
Q Consensus       348 ~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  426 (500)
                         .....+.+|...|.+++|+|+|++|++++. +.|++||+.+ ++.+..+.+|...+..+..      .+..      
T Consensus       276 ---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~------~~~~------  339 (447)
T 3dw8_B          276 ---SNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS------LYEN------  339 (447)
T ss_dssp             -----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH------HHHT------
T ss_pred             ---cccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc------cccc------
Confidence               001123456778999999999999999999 9999999997 8888888887542210000      0000      


Q ss_pred             eccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccccc---------------------------------CcccC
Q 010816          427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP---------------------------------GHADE  473 (500)
Q Consensus       427 ~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---------------------------------~h~~~  473 (500)
                      +.-.....++|+|++++|++|+.||.|++||+.+++... +.                                 .+...
T Consensus       340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (447)
T 3dw8_B          340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK  418 (447)
T ss_dssp             SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred             cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCc
Confidence            000001124789999999999999999999998876532 11                                 23457


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          474 VFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       474 V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |..++|+|+|+.||+++.++ +++|.
T Consensus       419 i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          419 ILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             CCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             eeEEEECCCCCEEEEEecce-eeeec
Confidence            89999999999999999887 66664

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.5e-36  Score=283.40  Aligned_cols=277  Identities=28%  Similarity=0.502  Sum_probs=224.7

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      ..+|+||+++ +||+| .|++|+|||+.+++.+..+  .+|...|.+++|+|++++|++|+.|++|++||+++++... .
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~-~  104 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-N  104 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-E
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-E
Confidence            4678999986 67766 5999999999999877654  4788899999999999999999999999999999987654 4


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-eEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEE
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW  266 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lw  266 (500)
                      +.+|...+.++.+.+       ..+++++.++.+++|+.... ..+..+.+|...+.++.+.+++ .+++++.|++|++|
T Consensus       105 ~~~h~~~~~~~~~~~-------~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  177 (318)
T 4ggc_A          105 MTSHSARVGSLSWNS-------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW  177 (318)
T ss_dssp             EECCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ecCccceEEEeecCC-------CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence            678888887766543       57999999999999998765 4566788999999999998876 68899999999999


Q ss_pred             eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (500)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~  346 (500)
                      |+++++...                                                                       
T Consensus       178 d~~~~~~~~-----------------------------------------------------------------------  186 (318)
T 4ggc_A          178 PSAPGEGGW-----------------------------------------------------------------------  186 (318)
T ss_dssp             ESSCBTTBS-----------------------------------------------------------------------
T ss_pred             ECCCCcccc-----------------------------------------------------------------------
Confidence            987653210                                                                       


Q ss_pred             CCCCCCceeeecccCcEEEEEECCCCC-E--EEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQ-W--VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY  423 (500)
Q Consensus       347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~-~--lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  423 (500)
                          ........|...|.+++++|++. .  +++++.|+.|++||........... +...+..+               
T Consensus       187 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~---------------  246 (318)
T 4ggc_A          187 ----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSI---------------  246 (318)
T ss_dssp             ----CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEE---------------
T ss_pred             ----cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeee---------------
Confidence                01112234556788899998664 3  3567789999999998887665443 33444433               


Q ss_pred             eeeeccccceeeEEcCCCCEEEEEE--CCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          424 CVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       424 ~~~~~~~~~~~~~~s~~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                                  .|+|++..+++++  .|+.|++||+++++.+..+.+|.+.|++++|+|||++|+|||.|++|+||+.
T Consensus       247 ------------~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          247 ------------LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             ------------EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             ------------eecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence                        5688888887765  7999999999999999999999999999999999999999999999999973

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-37  Score=293.16  Aligned_cols=250  Identities=25%  Similarity=0.476  Sum_probs=209.9

Q ss_pred             eeEEecCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc--cccccCcccceEEEEeeeeecCCCCceEEEEeC
Q 010816          142 PMFKCTGHKN-WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASK  218 (500)
Q Consensus       142 ~~~~~~~h~~-~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~  218 (500)
                      .+..+.+|.. .|.+++|+|+|++||+|+.|++|++||..++...  .....+|...|.+++|+|     ++.++++|+.
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-----~g~~l~s~s~   81 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-----CGNYLASASF   81 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-----TSSEEEEEET
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-----CCCEEEEEEC
Confidence            4556788987 9999999999999999999999999999876532  223468999999999987     4568999999


Q ss_pred             CCcEEEEECCCC--eEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816          219 DGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (500)
Q Consensus       219 dg~v~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (500)
                      |+++++||+..+  +++..+.+|...|.+++|++++ .|++|+.|++|++||+.++.....                   
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~-------------------  142 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC-------------------  142 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE-------------------
T ss_pred             CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE-------------------
Confidence            999999998876  5678899999999999999986 688999999999999865421110                   


Q ss_pred             eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE
Q 010816          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV  375 (500)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l  375 (500)
                                                                               ...+.+|...|.+++|+|++++|
T Consensus       143 ---------------------------------------------------------~~~~~~h~~~v~~~~~~p~~~~l  165 (345)
T 3fm0_A          143 ---------------------------------------------------------VSVLNSHTQDVKHVVWHPSQELL  165 (345)
T ss_dssp             ---------------------------------------------------------EEEECCCCSCEEEEEECSSSSCE
T ss_pred             ---------------------------------------------------------EEEecCcCCCeEEEEECCCCCEE
Confidence                                                                     11234677889999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCc--eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcE
Q 010816          376 ASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL  453 (500)
Q Consensus       376 asgs~Dg~i~lwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v  453 (500)
                      ++|+.|+.|++||..+++  +...+.+|...|.++                           +|+|+|++|++|+.|++|
T Consensus       166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l---------------------------~~sp~g~~l~s~s~D~~v  218 (345)
T 3fm0_A          166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL---------------------------AFDPSGQRLASCSDDRTV  218 (345)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE---------------------------EECTTSSEEEEEETTSCE
T ss_pred             EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEE---------------------------EECCCCCEEEEEeCCCeE
Confidence            999999999999998875  457889999999887                           569999999999999999


Q ss_pred             EEEECCCc---------------cccccccC-cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          454 KVWDIRTQ---------------KLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       454 ~iwd~~~~---------------~~~~~~~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +|||....               +++..+.+ |...|++++|+|++..|++++.|+.|++|+
T Consensus       219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~  280 (345)
T 3fm0_A          219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ  280 (345)
T ss_dssp             EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            99996432               12223444 888999999999999999999999999995

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.8e-37  Score=293.12  Aligned_cols=299  Identities=15%  Similarity=0.171  Sum_probs=231.4

Q ss_pred             cccccCCcccEEEEEEcCC---CCeEEEEeCCCcEEEEeCCC-Ccee-EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816          101 SATIAGHTEAVLSVAFSPD---GRQLASGSGDTTVRLWDLNT-QTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ  175 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~---~~~lat~~~d~~i~iwd~~~-~~~~-~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~  175 (500)
                      ...+.+|.+.|.+++|+|+   |++||+|+.||.|+|||+.+ +..+ ..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  111 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK  111 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence            3467899999999999999   69999999999999999987 4444 67789999999999999999999999999999


Q ss_pred             EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEE
Q 010816          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY  255 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~  255 (500)
                      +||+.+++...  ..+|...|.++.|.+   ..++..+++++.|+.|++||+++++++..+..|. .+.++.+..+ .++
T Consensus       112 iwd~~~~~~~~--~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~  184 (368)
T 3mmy_A          112 MWDLSSNQAIQ--IAQHDAPVKTIHWIK---APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAV  184 (368)
T ss_dssp             EEETTTTEEEE--EEECSSCEEEEEEEE---CSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETT-EEE
T ss_pred             EEEcCCCCcee--eccccCceEEEEEEe---CCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCC-eeE
Confidence            99999887543  567899999999954   2245679999999999999999998888887765 5666666654 677


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  335 (500)
                      +++.|+.+++||+...........                                                        
T Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~--------------------------------------------------------  208 (368)
T 3mmy_A          185 VATAERGLIVYQLENQPSEFRRIE--------------------------------------------------------  208 (368)
T ss_dssp             EEEGGGCEEEEECSSSCEEEEECC--------------------------------------------------------
T ss_pred             EEeCCCcEEEEEeccccchhhhcc--------------------------------------------------------
Confidence            888999999999875432111000                                                        


Q ss_pred             eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC----CEEEEEeCCCcEEEEeCCCC---ceEEEEeCCcccEEEE
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG----QWVASASFDKSIKLWNGTTG---KFVAVFRGHVGPVYQI  408 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g----~~lasgs~Dg~i~lwd~~~~---~~~~~~~~h~~~v~~~  408 (500)
                                           ..+...+.++++.++.    ..+++++.||.|++||+...   +.+..+.+|.......
T Consensus       209 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  267 (368)
T 3mmy_A          209 ---------------------SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT  267 (368)
T ss_dssp             ---------------------CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred             ---------------------ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence                                 0011123333333333    23999999999999999887   5677788887621100


Q ss_pred             EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEE
Q 010816          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVAS  488 (500)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s  488 (500)
                      ..               ......+..++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|+|++|++
T Consensus       268 ~~---------------~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  332 (368)
T 3mmy_A          268 SA---------------PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAY  332 (368)
T ss_dssp             CC---------------CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred             cc---------------cccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEE
Confidence            00               000011233378999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEe
Q 010816          489 GGKDRVLKLW  498 (500)
Q Consensus       489 ~~~D~~v~iW  498 (500)
                      ++.|+..+.|
T Consensus       333 ~s~d~~~~~~  342 (368)
T 3mmy_A          333 ASSYDWSKGH  342 (368)
T ss_dssp             EECCCSTTCG
T ss_pred             Eecccccccc
Confidence            9999855544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=9.7e-37  Score=295.01  Aligned_cols=258  Identities=26%  Similarity=0.455  Sum_probs=211.9

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      ..|.+++|+|++++||+|+.|++|+|||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+++++.... 
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~-  202 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT-  202 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE-
Confidence            3599999999999999999999999999999998889999999999999999999999999999999999998865432 


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-------cCccccEEEEEeCCCC-eEEEEeCC
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-------SGHTLAVTCVKWGGDG-VIYTGSQD  260 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~-~l~t~~~d  260 (500)
                       ..+...+..+.|.|.    ++..+++|+.|+.|++||++++.++..+       .+|...|.+++|++++ .|++|+.|
T Consensus       203 -~~~~~~v~~~~~~~~----~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d  277 (393)
T 1erj_A          203 -LSIEDGVTTVAVSPG----DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  277 (393)
T ss_dssp             -EECSSCEEEEEECST----TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             -EEcCCCcEEEEEECC----CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence             234567888888762    4568999999999999999998887766       5799999999999987 68899999


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      ++|++||++++........                                                             
T Consensus       278 ~~v~~wd~~~~~~~~~~~~-------------------------------------------------------------  296 (393)
T 1erj_A          278 RSVKLWNLQNANNKSDSKT-------------------------------------------------------------  296 (393)
T ss_dssp             SEEEEEEC------------------------------------------------------------------------
T ss_pred             CEEEEEECCCCCCcccccC-------------------------------------------------------------
Confidence            9999999876432111000                                                             


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCC
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS  420 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  420 (500)
                            .........+.+|...|.+++|+|++.+|++|+.|+.|++||..+++.+..+.+|.+.|.++.+...       
T Consensus       297 ------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~-------  363 (393)
T 1erj_A          297 ------PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG-------  363 (393)
T ss_dssp             ----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-------
T ss_pred             ------CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC-------
Confidence                  0000112345688999999999999999999999999999999999999999999999998865210       


Q ss_pred             CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816          421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       421 ~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                                    ..|+|++.+|++|+.|++|+||+++.
T Consensus       364 --------------~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          364 --------------SSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             --------------CTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             --------------cCcCCCCCEEEEECCCCcEEECcccc
Confidence                          02467899999999999999999754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.1e-38  Score=301.98  Aligned_cols=261  Identities=22%  Similarity=0.379  Sum_probs=218.4

Q ss_pred             EEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCc
Q 010816          132 VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR  211 (500)
Q Consensus       132 i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  211 (500)
                      +..|+..+..+...+.+|.+.|.+++|+|++++|+||+.|++|++||+.+++... .+..|...|.+++|+|     ++.
T Consensus        48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-~~~~h~~~v~~~~~s~-----~g~  121 (380)
T 3iz6_a           48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH-AIKLHCPWVMECAFAP-----NGQ  121 (380)
T ss_dssp             CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE-EEECCCTTCCCCEECT-----TSS
T ss_pred             ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce-EEecCCCCEEEEEECC-----CCC
Confidence            3345555556667889999999999999999999999999999999998886543 4678999999999877     457


Q ss_pred             eEEEEeCCCcEEEEECCCCe-------EEEEecCccccEEEEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCc
Q 010816          212 RFVSASKDGDARIWDVSLRK-------CVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGH  282 (500)
Q Consensus       212 ~~~s~s~dg~v~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~  282 (500)
                      .+++|+.|+.+++||+....       ....+.+|...|.++.|.++  ..|++|+.|++|++||+.+++.+..+..   
T Consensus       122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~---  198 (380)
T 3iz6_a          122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS---  198 (380)
T ss_dssp             EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC---
T ss_pred             EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec---
Confidence            89999999999999986532       33457799999999999875  3699999999999999988765433210   


Q ss_pred             eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCc
Q 010816          283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL  362 (500)
Q Consensus       283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~  362 (500)
                                                                                             ....+|...
T Consensus       199 -----------------------------------------------------------------------~~~~~h~~~  207 (380)
T 3iz6_a          199 -----------------------------------------------------------------------EFPSGHTAD  207 (380)
T ss_dssp             -----------------------------------------------------------------------CSSSSCCSC
T ss_pred             -----------------------------------------------------------------------ccCCCCccC
Confidence                                                                                   011367788


Q ss_pred             EEEEEECC-CCCEEEEEeCCCcEEEEeCC-CCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816          363 VNHVYFSP-DGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (500)
Q Consensus       363 v~~l~~sp-~g~~lasgs~Dg~i~lwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  440 (500)
                      |.+++|+| ++++|++|+.|+.|++||++ .++.+..+.+|.+.|.++                           +|+|+
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v---------------------------~~~p~  260 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV---------------------------KFFPD  260 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEE---------------------------EECTT
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEE---------------------------EEecC
Confidence            99999987 88999999999999999998 567888999999998877                           56999


Q ss_pred             CCEEEEEECCCcEEEEECCCccccccccCcc-------cCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          441 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA-------DEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       441 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~-------~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +++|++|+.|++|++||+++++.+..+..+.       ..|.+++|+|+|++|++|+.|+.|++|+
T Consensus       261 ~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd  326 (380)
T 3iz6_a          261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD  326 (380)
T ss_dssp             SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence            9999999999999999999988766554432       3489999999999999999999999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-37  Score=288.86  Aligned_cols=244  Identities=25%  Similarity=0.368  Sum_probs=194.9

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-------CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      +|.+.|.+++|+|++++||+|+.|++|+|||+..       ..++..+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            4999999999999999999999999999999853       245567889999999999999999999999999999999


Q ss_pred             CCCC-Cc--ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC--eEEEEecCccccEEEEEeCCC--
Q 010816          179 PQTG-KP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGD--  251 (500)
Q Consensus       179 ~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~--  251 (500)
                      +... ..  ....+.+|...|.++.|+|     ++..|++|+.|++|++||...+  +++..+.+|...|.++.|+++  
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p-----~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  210 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHP-----SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG  210 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECS-----SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECC-----CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence            9533 21  1234678999999999987     3468999999999999998766  678889999999999999987  


Q ss_pred             C-eEEEEeCCCeEEEEeCCCC--------eeEEEeec-CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816          252 G-VIYTGSQDCTIKVWETTQG--------KLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (500)
Q Consensus       252 ~-~l~t~~~dg~i~lwd~~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (500)
                      + .|++|+.|++|++||+..+        .....+.. |...|.++++++.                             
T Consensus       211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-----------------------------  261 (330)
T 2hes_X          211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-----------------------------  261 (330)
T ss_dssp             SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-----------------------------
T ss_pred             eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-----------------------------
Confidence            4 5899999999999998654        33444444 7788888887642                             


Q ss_pred             hhhcCCCCcEEEEeeCCCeEEEEcCCCCC--CCceeeecccC-cEEEEEECC--CCCEEEEEeCCCcEEEEeCCC
Q 010816          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQ-LVNHVYFSP--DGQWVASASFDKSIKLWNGTT  391 (500)
Q Consensus       322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~--~~~~~~~~h~~-~v~~l~~sp--~g~~lasgs~Dg~i~lwd~~~  391 (500)
                              ..+++++.|++|++||.....  .......+|.. .|++++|+|  ++++||+|+.||.|++||+++
T Consensus       262 --------~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          262 --------GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             --------SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             --------CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence                    358999999999999975432  11123357877 899999999  789999999999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.9e-36  Score=293.72  Aligned_cols=290  Identities=19%  Similarity=0.274  Sum_probs=235.6

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      ...+.+| ..+....|+|++++||+|+.|+.|+|||+.++.....+.+|...|.+++|+|++++|++|+.|+.|++||+.
T Consensus        91 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~  169 (420)
T 3vl1_A           91 SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK  169 (420)
T ss_dssp             TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            3445556 455566789999999999999999999999988888788999999999999999999999999999999999


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC---ccccEEEEE----------
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---HTLAVTCVK----------  247 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~---h~~~v~~~~----------  247 (500)
                      +++... .+.+|...|.++.|+|     ++..+++++.|+.|++||+++++++..+..   |...|.++.          
T Consensus       170 ~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  243 (420)
T 3vl1_A          170 DGSNPR-TLIGHRATVTDIAIID-----RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH  243 (420)
T ss_dssp             TCCCCE-EEECCSSCEEEEEEET-----TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCG
T ss_pred             CCcCce-EEcCCCCcEEEEEEcC-----CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceee
Confidence            887654 4678999999999987     456899999999999999999999888874   344555554          


Q ss_pred             -----------eCCCC-eEEEEeCCCeEEEEeCCCCeeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816          248 -----------WGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (500)
Q Consensus       248 -----------~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (500)
                                 |++++ .|++|+.||.|++||+++++....+. .|...|.+++++++.                     
T Consensus       244 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------  302 (420)
T 3vl1_A          244 EISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN---------------------  302 (420)
T ss_dssp             GGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC---------------------
T ss_pred             ecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC---------------------
Confidence                       45666 68899999999999999988776664 578889999988752                     


Q ss_pred             HHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec-ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816          315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (500)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~  393 (500)
                                    ...+++|+.|+.|++||+.....+...+.+ |...|.++.+ +++++|++++.|+.|++||+...+
T Consensus       303 --------------~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~  367 (420)
T 3vl1_A          303 --------------ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE  367 (420)
T ss_dssp             --------------TTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred             --------------CCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence                          227999999999999999876665566665 6778888855 578899999999999999987642


Q ss_pred             e---------EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC---EEEEEECCCcEEEEECCC
Q 010816          394 F---------VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR---LLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       394 ~---------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~l~s~s~d~~v~iwd~~~  460 (500)
                      .         ...+.+|.+.+                           ..++|+|++.   .+++++.+|.+.+|+++.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~v---------------------------~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          368 SERPAIEFETPTFLVSNDDAV---------------------------SQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CCSCEECTTSCEEECCSSCCC---------------------------CEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             CCccceeccCccEEccCCcce---------------------------EEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            2         11223333333                           3447899999   788888899999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-37  Score=308.53  Aligned_cols=284  Identities=12%  Similarity=0.064  Sum_probs=219.0

Q ss_pred             cccCCcccEEEEEEcCC------CCeEEEEeCCCcEEEEeCCCCc-----------eeEEecCCCCCEEEEEEcCCCCEE
Q 010816          103 TIAGHTEAVLSVAFSPD------GRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHKNWVLCIAWSADGKHL  165 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~------~~~lat~~~d~~i~iwd~~~~~-----------~~~~~~~h~~~v~~v~~s~~~~~l  165 (500)
                      ++.+|.+.|.+++|+|+      +.+||+|+.||+|+|||+.++.           +...+.+|...|.+++|+++ ..|
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l  280 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV  280 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence            46788999999999997      5799999999999999997653           23467899999999999986 489


Q ss_pred             EEEeCCCeEEEEeCCCCCcccccccCcccceEEEE--eeeeecCCCC-ceEEEEeCCCcEEEEECCCCeEEEEecCccc-
Q 010816          166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS--WEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICLSGHTL-  241 (500)
Q Consensus       166 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~-~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~-  241 (500)
                      ++|+.||+|++||++++......+.+|...|.+++  |.|     ++ ..|++||.|++|+|||+++++++..+.+|.. 
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-----~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~  355 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-----FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG  355 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-----TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-----CCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence            99999999999999887544445788999999994  443     33 5799999999999999998887766767653 


Q ss_pred             -cEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816          242 -AVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (500)
Q Consensus       242 -~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (500)
                       .|.+++|+|++ .+++++.|++|++||++++..+..+.+|...|.+++++|+.                          
T Consensus       356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g--------------------------  409 (524)
T 2j04_B          356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH--------------------------  409 (524)
T ss_dssp             CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC--------------------------
T ss_pred             CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC--------------------------
Confidence             47889999976 68889999999999999998888888999999999998862                          


Q ss_pred             hhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec-----ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-CCc
Q 010816          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-----HQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TGK  393 (500)
Q Consensus       320 ~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~-----h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~-~~~  393 (500)
                                ..+++|+.|++|++||+...  .......     +...+.+++|+|+|+.+..  .| .+++|+.. ++.
T Consensus       410 ----------~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~-~~~~~~~~~~g~  474 (524)
T 2j04_B          410 ----------PMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DS-SYEVYPLTVNDV  474 (524)
T ss_dssp             ----------CBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEE--CC-CCCCCC------
T ss_pred             ----------CeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEc--cC-CceecccccCCc
Confidence                      45899999999999997542  1111111     1224789999999986532  22 34455443 567


Q ss_pred             eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC---CEEEEEECCCcEEEEECCC
Q 010816          394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS---RLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~s~s~d~~v~iwd~~~  460 (500)
                      ++..+.+|.++|.++                           +|+|++   .++|+|+.||.||||+++.
T Consensus       475 ~~~~l~gh~~~V~~V---------------------------afsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          475 SKAKIDAHGINITCT---------------------------KWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             -------CCCSCCCE---------------------------EECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             ceeeecCCCceEEEE---------------------------ECCCCCCccHHHHhhccCceEEEEEccc
Confidence            778889999888777                           678985   4999999999999999754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=294.72  Aligned_cols=291  Identities=13%  Similarity=0.121  Sum_probs=227.0

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~  186 (500)
                      -...|.+++|+|||+++||++.|++|+  |....+.+   .+|...|.+++|+|+|       .++.+.+|+.+...   
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~---   78 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FENKLDFELAQQNG---   78 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------CcceEEEEeCCCce---
Confidence            357899999999999999999999999  76655544   7999999999999998       46666666543222   


Q ss_pred             ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccc-----cEEEEEeCCCC-eEEEEeCC
Q 010816          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-----AVTCVKWGGDG-VIYTGSQD  260 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~-~l~t~~~d  260 (500)
                      .....|...|.+++|+|     ++.++++++.||.|++||...  ++..+. |..     .|.+++|+||| .|++|+.|
T Consensus        79 ~~~~~~~~~V~~vawSP-----dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D  150 (588)
T 2j04_A           79 LLNSQPVCYPRVCKPSP-----IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED  150 (588)
T ss_dssp             SSTTSCSCCEEEEEECS-----SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT
T ss_pred             EeecCCCCcEEEEEECC-----CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC
Confidence            12225588899999998     557899999999999999544  666666 665     59999999998 58899999


Q ss_pred             CeEEEEeCCCCee-------EEEe----ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816          261 CTIKVWETTQGKL-------IREL----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (500)
Q Consensus       261 g~i~lwd~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (500)
                      |+|++||+.++..       +..+    .+|..+|.+++++|+                                     
T Consensus       151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd-------------------------------------  193 (588)
T 2j04_A          151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED-------------------------------------  193 (588)
T ss_dssp             SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-------------------------------------
T ss_pred             CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC-------------------------------------
Confidence            9999999998753       5666    567789999999875                                     


Q ss_pred             cEEEEeeCCCeEEEEcCCCCCCC--ceee-ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816          330 ERLVSGSDDFTMFLWEPAVSKQP--KTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (500)
Q Consensus       330 ~~~~s~s~d~~v~~wd~~~~~~~--~~~~-~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~  406 (500)
                      . +++++.|+++++||+......  ...+ .+|...|.+++|+  |+.||+++ |++|++||+.+++......+|...++
T Consensus       194 g-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~  269 (588)
T 2j04_A          194 V-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFH  269 (588)
T ss_dssp             E-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCC
T ss_pred             c-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEE
Confidence            2 788999999999998665421  2335 4788999999999  68999987 69999999998887444448999888


Q ss_pred             EEEeeeeeeecCCCCceeeeeccccceeeEE--cCCCCEEEEEECCCcEEEEECC------------------------C
Q 010816          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSW--SADSRLLLSGSKDSTLKVWDIR------------------------T  460 (500)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~s~s~d~~v~iwd~~------------------------~  460 (500)
                      .+.                           +  +|++..|++++.||+ ++|...                        .
T Consensus       270 ~va---------------------------~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g  321 (588)
T 2j04_A          270 IIP---------------------------LNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIW  321 (588)
T ss_dssp             EEE---------------------------ETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTT
T ss_pred             EEE---------------------------eeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCC
Confidence            874                           4  566666666666666 666542                        2


Q ss_pred             ccccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816          461 QKLKQDLPGHADEVFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       461 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~  491 (500)
                      +. ...+.+ ...|++++|||||+.+|+++.
T Consensus       322 ~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          322 NE-FNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             TS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             Cc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            22 223333 456999999999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.6e-36  Score=316.95  Aligned_cols=288  Identities=23%  Similarity=0.363  Sum_probs=253.1

Q ss_pred             eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816          143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (500)
Q Consensus       143 ~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v  222 (500)
                      ...+.+|.+.|.+++|+|++++|++++.||.|++||+.+++... .+.+|...|.++.|+|     ++..+++++.||.|
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR-SIQVTETPVRAGKFIA-----RKNWIIVGSDDFRI   79 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEEEG-----GGTEEEEEETTSEE
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE-EEecCCCcEEEEEEeC-----CCCEEEEEeCCCeE
Confidence            45678999999999999999999999999999999999886544 4668999999999998     34689999999999


Q ss_pred             EEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccc
Q 010816          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAF  300 (500)
Q Consensus       223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (500)
                      ++||+.+++.+..+.+|...|++++|++++ .|++++.||.|++||+.++ .....+..|...|.+++++|..       
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------  152 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD-------  152 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE-------
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC-------
Confidence            999999999999999999999999999987 6889999999999999887 6677888999999999998721       


Q ss_pred             cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC--CCCEEEEE
Q 010816          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASA  378 (500)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp--~g~~lasg  378 (500)
                                                  +..+++++.|++|++||+............+...+.+++|+|  ++.+|++|
T Consensus       153 ----------------------------~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  204 (814)
T 3mkq_A          153 ----------------------------PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA  204 (814)
T ss_dssp             ----------------------------EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred             ----------------------------CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE
Confidence                                        346899999999999998765554444445558899999999  99999999


Q ss_pred             eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       379 s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                      +.||.|++||+.+++.+..+.+|.+.+.++                           +|+|++.+|++++.||.|++||+
T Consensus       205 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~---------------------------~~~~~~~~l~~~~~dg~v~vwd~  257 (814)
T 3mkq_A          205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFA---------------------------VFHPTLPIIISGSEDGTLKIWNS  257 (814)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCSSCEEEE---------------------------EECSSSSEEEEEETTSCEEEEET
T ss_pred             eCCCEEEEEECCCCcEEEEEcCCCCCEEEE---------------------------EEcCCCCEEEEEeCCCeEEEEEC
Confidence            999999999999999999999999988877                           57999999999999999999999


Q ss_pred             CCccccccccCcccCEEEEEEcCCCCE--EEEEeCCCcEEEec
Q 010816          459 RTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLWM  499 (500)
Q Consensus       459 ~~~~~~~~~~~h~~~V~~l~~s~dg~~--l~s~~~D~~v~iW~  499 (500)
                      .+++....+..|...+++++|+|+|+.  +++++ |+.+.+|+
T Consensus       258 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~  299 (814)
T 3mkq_A          258 STYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS  299 (814)
T ss_dssp             TTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred             CCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence            999999999999999999999999874  55555 55566664

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6e-36  Score=290.43  Aligned_cols=283  Identities=25%  Similarity=0.465  Sum_probs=238.2

Q ss_pred             EecCCCCC--EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816          145 KCTGHKNW--VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (500)
Q Consensus       145 ~~~~h~~~--v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v  222 (500)
                      ...+|...  +.+++|++  ..+++++.|+.|++||+.+++........|...|.+++|+|     ++..+++|+.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-----~~~~l~~~~~dg~i  158 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH-----DGSFLSVGLGNGLV  158 (401)
T ss_dssp             ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT-----TSSEEEEEETTSCE
T ss_pred             eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-----CCCEEEEECCCCeE
Confidence            34456544  55577765  56888999999999999998866544455889999999987     45689999999999


Q ss_pred             EEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816          223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (500)
Q Consensus       223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (500)
                      ++||+.+++.+..+.+|...|.++.|++ ..+++|+.||.|++||++ .+..+..+..|...|.+++++++         
T Consensus       159 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---------  228 (401)
T 4aez_A          159 DIYDVESQTKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD---------  228 (401)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT---------
T ss_pred             EEEECcCCeEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC---------
Confidence            9999999999999999999999999964 589999999999999998 55677888899999999999875         


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEe-
Q 010816          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASAS-  379 (500)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs-  379 (500)
                                                 +..+++|+.|+.|++||+... .....+.+|...|.+++|+|++ .++++|+ 
T Consensus       229 ---------------------------~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          229 ---------------------------GLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             ---------------------------SSEEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred             ---------------------------CCEEEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence                                       357999999999999998753 3455677899999999999976 5667765 


Q ss_pred             -CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE--CCCcEEEE
Q 010816          380 -FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVW  456 (500)
Q Consensus       380 -~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s--~d~~v~iw  456 (500)
                       .|+.|++||+.+++.+..+. |...+.++                           +|+|++++|++++  .||.|++|
T Consensus       281 s~d~~i~i~d~~~~~~~~~~~-~~~~v~~~---------------------------~~s~~~~~l~~~~g~~dg~i~v~  332 (401)
T 4aez_A          281 TMDKQIHFWNAATGARVNTVD-AGSQVTSL---------------------------IWSPHSKEIMSTHGFPDNNLSIW  332 (401)
T ss_dssp             TTTCEEEEEETTTCCEEEEEE-CSSCEEEE---------------------------EECSSSSEEEEEECTTTCEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEe-CCCcEEEE---------------------------EECCCCCeEEEEeecCCCcEEEE
Confidence             79999999999999888776 44556555                           6799999999954  89999999


Q ss_pred             ECCCcccc--ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          457 DIRTQKLK--QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       457 d~~~~~~~--~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      |+.+++..  ..+.+|...|.+++|+|+|++|++++.|+.|++|+.
T Consensus       333 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~  378 (401)
T 4aez_A          333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV  378 (401)
T ss_dssp             EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred             ecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            99886544  346789999999999999999999999999999973

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.1e-36  Score=282.78  Aligned_cols=253  Identities=21%  Similarity=0.366  Sum_probs=206.6

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      ...+.+|...|.+++|+|++.+|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCcc-cccccCcccceEEEEeeeeecC-----CCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-e
Q 010816          181 TGKPS-GNPLSGHKKWITGISWEPVHLN-----APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V  253 (500)
Q Consensus       181 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~  253 (500)
                      ..... .....+|...|.++.|.|....     .....+++++.|+.|++|| ...+....+.+|...|.+++|++++ +
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~  227 (343)
T 2xzm_R          149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY  227 (343)
T ss_dssp             SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCE
Confidence            43211 1123478899999999885321     1235799999999999999 4567777889999999999999987 6


Q ss_pred             EEEEeCCCeEEEEeCCC-CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816          254 IYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (500)
Q Consensus       254 l~t~~~dg~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (500)
                      |++|+.|+.|++||+.. ......+ .+...|.+++++|+.                                     .+
T Consensus       228 l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-------------------------------------~~  269 (343)
T 2xzm_R          228 IATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKL-------------------------------------QW  269 (343)
T ss_dssp             EEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSS-------------------------------------CE
T ss_pred             EEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCC-------------------------------------CE
Confidence            88999999999999954 3333433 245568889888752                                     24


Q ss_pred             EEeeCCCeEEEEcCCCCCCCc-eee-----------ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816          333 VSGSDDFTMFLWEPAVSKQPK-TRM-----------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (500)
Q Consensus       333 ~s~s~d~~v~~wd~~~~~~~~-~~~-----------~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~  392 (500)
                      ++++.|+.+++||+....... ..+           .+|...|.+++|+|+|++|++|+.||.|++|+++++
T Consensus       270 la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          270 VAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             EEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            456678889999986543221 112           268889999999999999999999999999998654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.8e-35  Score=288.94  Aligned_cols=288  Identities=31%  Similarity=0.536  Sum_probs=248.6

Q ss_pred             EeEEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe
Q 010816           92 FRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS  169 (500)
Q Consensus        92 ~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~  169 (500)
                      .+++..  ..+...+.+|.+.|.+++|+  +++|++|+.||+|++||+.+++.+..+.+|...|.++.|+  ++.|++|+
T Consensus       141 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s  216 (445)
T 2ovr_B          141 LKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGS  216 (445)
T ss_dssp             EEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEe
Confidence            344443  34566788999999999997  6799999999999999999999999999999999999995  57899999


Q ss_pred             CCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeC
Q 010816          170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG  249 (500)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~  249 (500)
                      .|++|++||+.+++... .+.+|...+.++.|.       +..+++|+.||.|++||+++++++..+.+|...|.++.| 
T Consensus       217 ~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-  287 (445)
T 2ovr_B          217 RDATLRVWDIETGQCLH-VLMGHVAAVRCVQYD-------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-  287 (445)
T ss_dssp             TTSEEEEEESSSCCEEE-EEECCSSCEEEEEEC-------SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-
T ss_pred             CCCEEEEEECCCCcEEE-EEcCCcccEEEEEEC-------CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-
Confidence            99999999999887653 467899999999872       357999999999999999999999999999999999999 


Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816          250 GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (500)
Q Consensus       250 ~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (500)
                      ....+++|+.|+.|++||+++++.+..+..|...+.++.+.+                                      
T Consensus       288 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--------------------------------------  329 (445)
T 2ovr_B          288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--------------------------------------  329 (445)
T ss_dssp             CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--------------------------------------
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC--------------------------------------
Confidence            345799999999999999999999999998888888776542                                      


Q ss_pred             cEEEEeeCCCeEEEEcCCCCCCCceeeec---ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE-----eCC
Q 010816          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTG---HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-----RGH  401 (500)
Q Consensus       330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~---h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~-----~~h  401 (500)
                      ..+++|+.|+.|++||+.... ....+.+   |...|.+++|+  +++|++|+.||.|++||+.+++.+..+     .+|
T Consensus       330 ~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  406 (445)
T 2ovr_B          330 NILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS  406 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred             CEEEEEeCCCeEEEEECCCCc-EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCC
Confidence            468999999999999986543 3344444   88899999996  689999999999999999999998877     356


Q ss_pred             cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCc----EEEEECCC
Q 010816          402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST----LKVWDIRT  460 (500)
Q Consensus       402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~----v~iwd~~~  460 (500)
                      .+.+.++                           +|+|++.++++|+.||+    |.+||...
T Consensus       407 ~~~v~~~---------------------------~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          407 GGVVWRI---------------------------RASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             TCEEEEE---------------------------EECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CceEEEE---------------------------EecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            7777776                           56999999999999998    99999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.9e-36  Score=287.58  Aligned_cols=291  Identities=20%  Similarity=0.337  Sum_probs=210.3

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCEEEEEEcC--CCCEEEEEeCCCeEE
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQ  175 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~  175 (500)
                      ..+.||.+.|++++|+|++++||+|+.||.|+|||+.++.    ....+.+|...|.+++|+|  ++++|++|+.|+.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            3567999999999999999999999999999999998763    4556789999999999999  699999999999999


Q ss_pred             EEeCCCCCc--------ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-----------
Q 010816          176 CWDPQTGKP--------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-----------  236 (500)
Q Consensus       176 ~wd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-----------  236 (500)
                      +||+.+++.        ....+.+|...|.++.|.|..   .+..+++++.|+.|++||+++++.+..+           
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH---LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCC---CCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence            999987642        123466899999999998741   1468999999999999999877643322           


Q ss_pred             --cCccccEEEEEeCCC----CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCH
Q 010816          237 --SGHTLAVTCVKWGGD----GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (500)
Q Consensus       237 --~~h~~~v~~~~~~~~----~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (500)
                        .+|...+.++.|+++    ..+++++.|+.+.+|+...++..                                    
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------------------------------  205 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH------------------------------------  205 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE------------------------------------
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee------------------------------------
Confidence              156677888888774    35777777777766655433211                                    


Q ss_pred             HHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC----CEEEEEeCCCcEEE
Q 010816          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG----QWVASASFDKSIKL  386 (500)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g----~~lasgs~Dg~i~l  386 (500)
                                                               ....+.+|...|.+++|+|++    ++|++|+.||.|++
T Consensus       206 -----------------------------------------~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          206 -----------------------------------------VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             -----------------------------------------EEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             -----------------------------------------eeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence                                                     012344678889999999998    89999999999999


Q ss_pred             EeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE----EEECCCcEEEEECCCcc
Q 010816          387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL----SGSKDSTLKVWDIRTQK  462 (500)
Q Consensus       387 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~----s~s~d~~v~iwd~~~~~  462 (500)
                      ||+.++........+.......                           ..++....++    .+.....+.+|+....+
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMF---------------------------DNSADVDMDAQGRSDSNTEEKAELQSNLQVE  297 (351)
T ss_dssp             EEEEECC------------------------------------------------------------------CCSEEEE
T ss_pred             EeCCCCcCccccCCcccceecc---------------------------CCCcccccccccccccccceeeeeccccccc
Confidence            9998765433222211111110                           1122222222    33345566778777778


Q ss_pred             ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       463 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      .+..+.+|.+.|++++|+|++++|++++.||.|++|+
T Consensus       298 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  334 (351)
T 3f3f_A          298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK  334 (351)
T ss_dssp             EEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             EEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            8888999999999999999999999999999999997

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.2e-37  Score=286.06  Aligned_cols=247  Identities=25%  Similarity=0.327  Sum_probs=202.5

Q ss_pred             ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe--EEEEecCccccEEEEEeCC---CCeEEEEeCCC
Q 010816          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGG---DGVIYTGSQDC  261 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~---~~~l~t~~~dg  261 (500)
                      ..+.+|...|.+++|+|     ++.++++|+.|++|++||++++.  ++..+.+|...|.+++|++   ...|++|+.|+
T Consensus         7 ~~~~~H~~~V~~v~~s~-----~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~   81 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDY-----YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR   81 (316)
T ss_dssp             -------CCEEEEEECG-----GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred             eecccccCeEEEeeEcC-----CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence            34678999999999987     45689999999999999998764  4677899999999999975   35799999999


Q ss_pred             eEEEEeCCCCe--eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816          262 TIKVWETTQGK--LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (500)
Q Consensus       262 ~i~lwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~  339 (500)
                      +|++||+++++  ....+.+|...|.+++++|+.                                  .+..+++|+.|+
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~----------------------------------~g~~lasgs~D~  127 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD----------------------------------YGLILACGSSDG  127 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTT----------------------------------TCSCEEEECSSS
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCC----------------------------------CCcEEEEEcCCC
Confidence            99999998874  566778899999999998741                                  134689999999


Q ss_pred             eEEEEcCCCCCCC--ceeeecccCcEEEEEECCC-----------------CCEEEEEeCCCcEEEEeCCCC---ceEEE
Q 010816          340 TMFLWEPAVSKQP--KTRMTGHQQLVNHVYFSPD-----------------GQWVASASFDKSIKLWNGTTG---KFVAV  397 (500)
Q Consensus       340 ~v~~wd~~~~~~~--~~~~~~h~~~v~~l~~sp~-----------------g~~lasgs~Dg~i~lwd~~~~---~~~~~  397 (500)
                      +|++||.......  ...+.+|...|.+++|+|+                 +++||+|+.|+.|++||++.+   +.+..
T Consensus       128 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  207 (316)
T 3bg1_A          128 AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK  207 (316)
T ss_dssp             CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC
T ss_pred             CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee
Confidence            9999998654221  3445689999999999997                 478999999999999999765   46678


Q ss_pred             EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC----CEEEEEECCCcEEEEECCCcc----ccccccC
Q 010816          398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS----RLLLSGSKDSTLKVWDIRTQK----LKQDLPG  469 (500)
Q Consensus       398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~s~s~d~~v~iwd~~~~~----~~~~~~~  469 (500)
                      +++|..+|.++                           +|+|++    .+|++|+.|++|+|||+.+..    ....+.+
T Consensus       208 l~~h~~~V~~v---------------------------~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~  260 (316)
T 3bg1_A          208 LEAHSDWVRDV---------------------------AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK  260 (316)
T ss_dssp             CBCCSSCEEEE---------------------------ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE
T ss_pred             cccCCCceEEE---------------------------EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc
Confidence            89999999888                           457876    899999999999999987631    1234567


Q ss_pred             cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          470 HADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       470 h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |.+.|++++|+|+|++|++++.|++|+||+
T Consensus       261 ~~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          261 FNDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             CSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence            889999999999999999999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.8e-34  Score=270.23  Aligned_cols=252  Identities=29%  Similarity=0.538  Sum_probs=215.4

Q ss_pred             cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      .+...+.+|...|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus        56 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  135 (312)
T 4ery_A           56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD  135 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEeCCCC-eEEE
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYT  256 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~l~t  256 (500)
                      +++++... .+..|...|.++.|+|     ++..+++++.|+.|++||+++++++..+. .+...+.+++|++++ .+++
T Consensus       136 ~~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  209 (312)
T 4ery_A          136 VKTGKCLK-TLPAHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA  209 (312)
T ss_dssp             TTTCCEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred             CCCCEEEE-EecCCCCcEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE
Confidence            99887543 4678889999999976     45689999999999999999988877654 566789999999986 6889


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                      ++.|+.|++||+++++.+..+..|....                                                    
T Consensus       210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------------------------------------------------  237 (312)
T 4ery_A          210 ATLDNTLKLWDYSKGKCLKTYTGHKNEK----------------------------------------------------  237 (312)
T ss_dssp             EETTTEEEEEETTTTEEEEEECSSCCSS----------------------------------------------------
T ss_pred             EcCCCeEEEEECCCCcEEEEEEecCCce----------------------------------------------------
Confidence            9999999999999887766554332100                                                    


Q ss_pred             CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF  416 (500)
Q Consensus       337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  416 (500)
                                              ..+......+++.+|++|+.||.|++||+.+++.+..+.+|...+.++        
T Consensus       238 ------------------------~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~--------  285 (312)
T 4ery_A          238 ------------------------YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST--------  285 (312)
T ss_dssp             ------------------------SCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEE--------
T ss_pred             ------------------------EEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEE--------
Confidence                                    001112234678899999999999999999999999999999998887        


Q ss_pred             cCCCCceeeeeccccceeeEEcCCCCEEEEEE--CCCcEEEEECC
Q 010816          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIR  459 (500)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s--~d~~v~iwd~~  459 (500)
                                         +|+|++.+|++++  .|++|++|+..
T Consensus       286 -------------------~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          286 -------------------ACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             -------------------EECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             -------------------eecCcCCceEEEEccCCccEEEecCC
Confidence                               5699999999997  69999999853

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.6e-35  Score=288.91  Aligned_cols=269  Identities=26%  Similarity=0.428  Sum_probs=229.0

Q ss_pred             EeEEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEc--CCCCEEEE
Q 010816           92 FRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS--ADGKHLVS  167 (500)
Q Consensus        92 ~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s--~~~~~l~s  167 (500)
                      .+++..  ..+..++.+|.+.|.+++|+|++ +|++|+.||+|++||+.++.++..+.+|...|.+++|+  +++++|++
T Consensus       144 i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s  222 (464)
T 3v7d_B          144 IRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT  222 (464)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred             EEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEE
Confidence            344443  34556788999999999999998 99999999999999999999999999999999999998  57889999


Q ss_pred             EeCCCeEEEEeCCCCCccc----------------------ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEE
Q 010816          168 GSKAGELQCWDPQTGKPSG----------------------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (500)
Q Consensus       168 ~~~d~~i~~wd~~~~~~~~----------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iw  225 (500)
                      |+.|++|++||+.++....                      ..+.+|...+.++..       ++..+++|+.|+.|++|
T Consensus       223 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~~~~~d~~i~vw  295 (464)
T 3v7d_B          223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-------HGNIVVSGSYDNTLIVW  295 (464)
T ss_dssp             EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE-------ETTEEEEEETTSCEEEE
T ss_pred             EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC-------CCCEEEEEeCCCeEEEE
Confidence            9999999999998765321                      234567777777643       24689999999999999


Q ss_pred             ECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCC
Q 010816          226 DVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG  304 (500)
Q Consensus       226 d~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  304 (500)
                      |+++++++..+.+|...|.++.|++++ .+++|+.||.|++||+.+++.+..+.+|...|.++.+++             
T Consensus       296 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-------------  362 (464)
T 3v7d_B          296 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-------------  362 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS-------------
T ss_pred             ECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC-------------
Confidence            999999999999999999999999876 689999999999999999999999999999999988753             


Q ss_pred             CCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcE
Q 010816          305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI  384 (500)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i  384 (500)
                                               ..+++++.|++|++||+.....  .....|...+..++|+|++++|++|+ ||.|
T Consensus       363 -------------------------~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i  414 (464)
T 3v7d_B          363 -------------------------KFLVSAAADGSIRGWDANDYSR--KFSYHHTNLSAITTFYVSDNILVSGS-ENQF  414 (464)
T ss_dssp             -------------------------SEEEEEETTSEEEEEETTTCCE--EEEEECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred             -------------------------CEEEEEeCCCcEEEEECCCCce--eeeecCCCCccEEEEEeCCCEEEEec-CCeE
Confidence                                     3699999999999999875432  22234666788889999999999998 8999


Q ss_pred             EEEeCCCCceEEE-EeCCcccEEEEE
Q 010816          385 KLWNGTTGKFVAV-FRGHVGPVYQIR  409 (500)
Q Consensus       385 ~lwd~~~~~~~~~-~~~h~~~v~~~~  409 (500)
                      ++||+.+++++.. +.+|.+.|.++.
T Consensus       415 ~iwd~~~g~~~~~~~~~~~~~v~~v~  440 (464)
T 3v7d_B          415 NIYNLRSGKLVHANILKDADQIWSVN  440 (464)
T ss_dssp             EEEETTTCCEEESCTTTTCSEEEEEE
T ss_pred             EEEECCCCcEEehhhccCCCcEEEEE
Confidence            9999999999875 567888887774

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=284.32  Aligned_cols=255  Identities=21%  Similarity=0.413  Sum_probs=204.6

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCceeEEecCCCCCEEEEEEcCC--CCEEEEEeCCCeEE
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQ  175 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~--~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~  175 (500)
                      +...+.||.+.|.+++|+|++++||+|+.||.|+|||+.  +...+..+.+|...|.+++|+++  +++|++|+.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            345678999999999999999999999999999999997  45666778899999999999987  89999999999999


Q ss_pred             EEeCCCCCc-ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC--eEEEEecCccccEEEEEeCCC-
Q 010816          176 CWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGD-  251 (500)
Q Consensus       176 ~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~-  251 (500)
                      +||+.+++. ....+.+|...|.++.|+|..   .+..+++++.|+.|++||++..  .....+.+|...|.++.|++. 
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE---YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCC---CCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            999988752 223466789999999998741   1468999999999999999877  345567789999999999983 


Q ss_pred             -------------CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816          252 -------------GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (500)
Q Consensus       252 -------------~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (500)
                                   ..+++++.|+.|++||++++....                                           
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------------------------------------------  196 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-------------------------------------------  196 (379)
T ss_dssp             ----------CTTCEEEEEETTSCEEEEEEETTTTEE-------------------------------------------
T ss_pred             ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-------------------------------------------
Confidence                         356666677777777654432110                                           


Q ss_pred             HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC---CCEEEEEeCCCcEEEEeCCCCc--
Q 010816          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD---GQWVASASFDKSIKLWNGTTGK--  393 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~---g~~lasgs~Dg~i~lwd~~~~~--  393 (500)
                                                      .....+.+|...|.+++|+|+   +.+|++++.||.|++||+.++.  
T Consensus       197 --------------------------------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~  244 (379)
T 3jrp_A          197 --------------------------------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP  244 (379)
T ss_dssp             --------------------------------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             --------------------------------eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence                                            011234578889999999999   8999999999999999998864  


Q ss_pred             -eEEEEe--CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          394 -FVAVFR--GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       394 -~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                       ....+.  .|...+.++                           +|+|++++|++++.||.|++|++.
T Consensus       245 ~~~~~~~~~~~~~~v~~~---------------------------~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          245 WKKTLLKEEKFPDVLWRA---------------------------SWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             CEEEESSSSCCSSCEEEE---------------------------EECSSSCCEEEEESSSSEEEEEEE
T ss_pred             ceeeeeccccCCCcEEEE---------------------------EEcCCCCEEEEecCCCcEEEEeCC
Confidence             222222  256666555                           679999999999999999999986

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.1e-34  Score=276.48  Aligned_cols=287  Identities=16%  Similarity=0.168  Sum_probs=205.7

Q ss_pred             EEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceE
Q 010816          134 LWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF  213 (500)
Q Consensus       134 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  213 (500)
                      ||++.+..++.....|...|.+++|+|||++|++|+.|+ +++||..+++....   .+...+..+.+.+.    ....+
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~   74 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS---QEMRHLSKVRMLHR----TNYVA   74 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE---EECSCCCEEEECTT----SSEEE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee---eecCCeEEEEEcCC----CCEEE
Confidence            566667777777788999999999999999999998775 78999887654321   11123444544431    12234


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCC-eeEEEeecCCceEEEEEecCc
Q 010816          214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTE  292 (500)
Q Consensus       214 ~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~  292 (500)
                      ++++.|++|++||..+++++..+. |...|.++.++++..++  ..|+.|++||+.++ +.+..+..   +...+++++ 
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-  147 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-  147 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-
T ss_pred             EEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEEecc---CCceEEEEc-
Confidence            678889999999999999988876 56789999999875443  34789999999987 55554443   222222222 


Q ss_pred             ceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE--eeCCCeEEEEcCCCCC--------------CC-cee
Q 010816          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS--GSDDFTMFLWEPAVSK--------------QP-KTR  355 (500)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~s~d~~v~~wd~~~~~--------------~~-~~~  355 (500)
                                                           ..++.  |+.||.|++||+....              .+ ...
T Consensus       148 -------------------------------------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~  190 (355)
T 3vu4_A          148 -------------------------------------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVL  190 (355)
T ss_dssp             -------------------------------------TEEEEEESSCTTCEEEEECCC------------------CCEE
T ss_pred             -------------------------------------cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEE
Confidence                                                 13443  7899999999987543              12 567


Q ss_pred             eecccCcEEEEEECCCCCEEEEEeCCCc-EEEEeCCCCceEEEEe-C-CcccEEEEEeeeeeeecCCCCceeeeeccccc
Q 010816          356 MTGHQQLVNHVYFSPDGQWVASASFDKS-IKLWNGTTGKFVAVFR-G-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM  432 (500)
Q Consensus       356 ~~~h~~~v~~l~~sp~g~~lasgs~Dg~-i~lwd~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (500)
                      +.+|...|++++|+|+|++||+|+.|++ |++||+.+++++..++ + |.++|.++                        
T Consensus       191 ~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~------------------------  246 (355)
T 3vu4_A          191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDM------------------------  246 (355)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEE------------------------
T ss_pred             EEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEE------------------------
Confidence            8899999999999999999999999998 9999999999999998 6 99999888                        


Q ss_pred             eeeEEcCCCCEEEEEECCCcEEEEECCCccccc--ccc---------------------CcccCEEEEEEcCCCCEEEEE
Q 010816          433 SLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLP---------------------GHADEVFAVDWSPDGEKVASG  489 (500)
Q Consensus       433 ~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~---------------------~h~~~V~~l~~s~dg~~l~s~  489 (500)
                         +|+|+|++|++++.|++|++||++......  .+.                     ++......++|++||+.|+++
T Consensus       247 ---~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~  323 (355)
T 3vu4_A          247 ---KWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVW  323 (355)
T ss_dssp             ---EECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEE
T ss_pred             ---EECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEE
Confidence               579999999999999999999997643211  111                     111223668999999999999


Q ss_pred             eCCCcEEEec
Q 010816          490 GKDRVLKLWM  499 (500)
Q Consensus       490 ~~D~~v~iW~  499 (500)
                      +.||.+++|+
T Consensus       324 ~~dg~~~~~~  333 (355)
T 3vu4_A          324 PHTRMIETFK  333 (355)
T ss_dssp             TTTTEEEEEE
T ss_pred             eCCCeEEEEE
Confidence            9999999996

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.4e-34  Score=279.00  Aligned_cols=276  Identities=23%  Similarity=0.396  Sum_probs=218.7

Q ss_pred             cceEeEEecc--ccccc--ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCE
Q 010816           89 QAVFRIRPVN--RCSAT--IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH  164 (500)
Q Consensus        89 ~~~~~~~~~~--~~~~~--~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~  164 (500)
                      +...++|...  .+...  +.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+++++..+.+|...+.+++|+  +.+
T Consensus       124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~  201 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYI  201 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTE
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCE
Confidence            3455666543  33333  45788999999999999999999999999999999999999999999999999884  679


Q ss_pred             EEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe----EEEEecCcc
Q 010816          165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHT  240 (500)
Q Consensus       165 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~----~~~~~~~h~  240 (500)
                      |++|+.|+.+++||..........+.+|...+..+.|.|     .+..+++++.|+.+++||...++    .+.....|.
T Consensus       202 l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-----~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~  276 (420)
T 4gga_A          202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ  276 (420)
T ss_dssp             EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred             EEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-----CCCeeeeeeccccceEEeeccccccceeeeeecccC
Confidence            999999999999999877665556788999999998876     45689999999999999998764    345677899


Q ss_pred             ccEEEEEeCCCC--eEEE--EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816          241 LAVTCVKWGGDG--VIYT--GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (500)
Q Consensus       241 ~~v~~~~~~~~~--~l~t--~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (500)
                      ..|.+++|++++  .+++  |+.|++|++||+.+++....+.                                      
T Consensus       277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--------------------------------------  318 (420)
T 4gga_A          277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--------------------------------------  318 (420)
T ss_dssp             SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--------------------------------------
T ss_pred             CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--------------------------------------
Confidence            999999998754  4444  4589999999998876544322                                      


Q ss_pred             HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe--CCCcEEEEeCCCCce
Q 010816          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKF  394 (500)
Q Consensus       317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs--~Dg~i~lwd~~~~~~  394 (500)
                                                                +...+.++.|+|+++.+++++  .|+.|++||+.++++
T Consensus       319 ------------------------------------------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~  356 (420)
T 4gga_A          319 ------------------------------------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK  356 (420)
T ss_dssp             ------------------------------------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred             ------------------------------------------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence                                                      113467788999998887765  799999999999999


Q ss_pred             EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCE
Q 010816          395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV  474 (500)
Q Consensus       395 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V  474 (500)
                      +..+++|.+.|.++                           +|+|+|++|+||+.|++|+|||+......+....+...+
T Consensus       357 v~~l~gH~~~V~~l---------------------------~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~  409 (420)
T 4gga_A          357 VAELKGHTSRVLSL---------------------------TMSPDGATVASAAADETLRLWRCFELDPARRREREKASA  409 (420)
T ss_dssp             EEEECCCSSCEEEE---------------------------EECTTSSCEEEEETTTEEEEECCSCSSCC----------
T ss_pred             EEEEcCCCCCEEEE---------------------------EEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCc
Confidence            99999999999888                           569999999999999999999998766555544454444


Q ss_pred             EEEE
Q 010816          475 FAVD  478 (500)
Q Consensus       475 ~~l~  478 (500)
                      ....
T Consensus       410 ~~~s  413 (420)
T 4gga_A          410 AKSS  413 (420)
T ss_dssp             ----
T ss_pred             cccc
Confidence            3333

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.8e-33  Score=266.47  Aligned_cols=253  Identities=26%  Similarity=0.421  Sum_probs=215.5

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      +..++.+|.+.|.+++|+|++++|++|+.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||.
T Consensus        78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~  157 (340)
T 4aow_A           78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT  157 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence            34567899999999999999999999999999999999998888888888999999999999999999999999999999


Q ss_pred             CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~  258 (500)
                      ...........+|...+..+.|.+..   ....+++++.|+.|++||++.++++..+.+|...|++++|++++ .|++|+
T Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  234 (340)
T 4aow_A          158 LGVCKYTVQDESHSEWVSCVRFSPNS---SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG  234 (340)
T ss_dssp             TSCEEEEECSSSCSSCEEEEEECSCS---SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEeccccCcccceEEccCC---CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence            87655555677899999999887643   33578899999999999999999999999999999999999986 688999


Q ss_pred             CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      .|+.|++||+++++.+..+..+ ..+.++.++++                                     ..+++++.|
T Consensus       235 ~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~-------------------------------------~~~~~~~~d  276 (340)
T 4aow_A          235 KDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPN-------------------------------------RYWLCAATG  276 (340)
T ss_dssp             TTCEEEEEETTTTEEEEEEECS-SCEEEEEECSS-------------------------------------SSEEEEEET
T ss_pred             CCCeEEEEEeccCceeeeecCC-ceEEeeecCCC-------------------------------------CceeeccCC
Confidence            9999999999999988887754 46777777653                                     246788889


Q ss_pred             CeEEEEcCCCCCC--------CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816          339 FTMFLWEPAVSKQ--------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (500)
Q Consensus       339 ~~v~~wd~~~~~~--------~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~  393 (500)
                      +.|++||+.....        ......+|...|++++|+|+|++|++|+.||.|+|||+++|.
T Consensus       277 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          277 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            9999999764321        112345788999999999999999999999999999998874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.6e-34  Score=297.69  Aligned_cols=267  Identities=28%  Similarity=0.492  Sum_probs=211.4

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      ...+.||...|.+++|+|++++|++|+.|++|+|||+.++.....+.+|...|.+++|+|++++|++|+.|++|++||..
T Consensus       423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence            45678999999999999999999999999999999999999988999999999999999999999999999999999986


Q ss_pred             CCCcc--cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEE
Q 010816          181 TGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (500)
Q Consensus       181 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~  257 (500)
                      .....  .....+|...|.++.|+|..   ....+++|+.|++|++||++..++...+.+|...|++++|++++ .|++|
T Consensus       503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg  579 (694)
T 3dm0_A          503 GECKYTISEGGEGHRDWVSCVRFSPNT---LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG  579 (694)
T ss_dssp             SCEEEEECSSTTSCSSCEEEEEECSCS---SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCcceeeccCCCCCCCcEEEEEEeCCC---CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            54221  12235788999999998743   12479999999999999999999999999999999999999987 68899


Q ss_pred             eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      +.|++|++||+++++.+..+.                                                           
T Consensus       580 ~~Dg~i~iwd~~~~~~~~~~~-----------------------------------------------------------  600 (694)
T 3dm0_A          580 GKDGVVLLWDLAEGKKLYSLE-----------------------------------------------------------  600 (694)
T ss_dssp             ETTSBCEEEETTTTEEEECCB-----------------------------------------------------------
T ss_pred             eCCCeEEEEECCCCceEEEec-----------------------------------------------------------
Confidence            999999999998875432211                                                           


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                                           +...|.+++|+|++.+|++++ |+.|++||+++++++..++.+..........      
T Consensus       601 ---------------------~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------  652 (694)
T 3dm0_A          601 ---------------------ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADN------  652 (694)
T ss_dssp             ---------------------CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred             ---------------------CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccc------
Confidence                                 123478999999999888775 5569999999999988877653321100000      


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                        ............+..++|+|+|++|++|+.||.|+||++.
T Consensus       653 --~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          653 --SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ----------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             --cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence              0000000001123456899999999999999999999975

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-35  Score=290.03  Aligned_cols=324  Identities=15%  Similarity=0.184  Sum_probs=241.7

Q ss_pred             EEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC---CCccc-cc
Q 010816          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT---GKPSG-NP  188 (500)
Q Consensus       115 ~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd~~~---~~~~~-~~  188 (500)
                      .|+|+++.+++++      .|+. +++.+..+ .+|.+.|.+++|+| ++++|++|+.||+|++||+.+   +.... ..
T Consensus        34 ~f~~~~~~~~~~~------~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  106 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNL-RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL  106 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGC-CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred             hcCCccccccccc------cccc-cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence            4678888887765      4884 45667777 89999999999999 999999999999999999876   43222 12


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC---CCeEEEEecC------------ccccEEEEE--eCCC
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS---LRKCVICLSG------------HTLAVTCVK--WGGD  251 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~---~~~~~~~~~~------------h~~~v~~~~--~~~~  251 (500)
                      ..+|...|.++.|.|     +...+++|+.||.|++||+.   .+++...+.+            +...+.++.  ++++
T Consensus       107 ~~~h~~~v~~~~~~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  181 (437)
T 3gre_A          107 TYDCSSTVTQITMIP-----NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE  181 (437)
T ss_dssp             EEECSSCEEEEEECT-----TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred             eccCCCCEEEEEEeC-----CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence            226899999999986     44689999999999999994   5544443333            334455555  3344


Q ss_pred             C-eEEEEeCCCeEEEEeCCCCeeEEEeec--CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816          252 G-VIYTGSQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (500)
Q Consensus       252 ~-~l~t~~~dg~i~lwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (500)
                      + .+++|+.|+.|++||+++++.+..+..  |...|.+++++++                                    
T Consensus       182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~------------------------------------  225 (437)
T 3gre_A          182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE------------------------------------  225 (437)
T ss_dssp             CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT------------------------------------
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC------------------------------------
Confidence            4 688999999999999999999999987  7889999998875                                    


Q ss_pred             CcEEEEeeCCCeEEEEcCCCCCCCceeee-cccCcEEEEEEC----CCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc
Q 010816          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFS----PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG  403 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~-~h~~~v~~l~~s----p~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~  403 (500)
                      +..+++|+.|++|++||++... ....+. +|...|.+++|+    |++.+|++|+.||.|++||+.+++++..+.+|..
T Consensus       226 ~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  304 (437)
T 3gre_A          226 CCVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE  304 (437)
T ss_dssp             SCEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred             CCEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence            3579999999999999987633 233333 777889999665    5688999999999999999999999999999987


Q ss_pred             cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCccc---CEEEEEEc
Q 010816          404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD---EVFAVDWS  480 (500)
Q Consensus       404 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~---~V~~l~~s  480 (500)
                      .+..+.+........... ..-......+..++|+ ++++|++|+.|+.|++||+.+++....+.+|..   .+....++
T Consensus       305 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (437)
T 3gre_A          305 QPSMEHFLPIEKGLEELN-FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVT  382 (437)
T ss_dssp             CCCGGGGSCBCSSGGGCC-CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEE
T ss_pred             CCccceecccccccccce-ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEee
Confidence            765443322110000000 0001123446667888 789999999999999999999998888887643   34555666


Q ss_pred             CCCCEEEEE
Q 010816          481 PDGEKVASG  489 (500)
Q Consensus       481 ~dg~~l~s~  489 (500)
                      ++..+++..
T Consensus       383 ~~~~~~~~~  391 (437)
T 3gre_A          383 ANLTMLLRK  391 (437)
T ss_dssp             TTEEEEEEE
T ss_pred             cceEEEEEe
Confidence            665554443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2e-35  Score=285.56  Aligned_cols=276  Identities=11%  Similarity=0.055  Sum_probs=183.0

Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCCcc----cccccCcccceEEEEeeeeecC---CCCceEEEEeCCCcEEEEECCCC
Q 010816          158 WSADGKHLVSGSKAGELQCWDPQTGKPS----GNPLSGHKKWITGISWEPVHLN---APCRRFVSASKDGDARIWDVSLR  230 (500)
Q Consensus       158 ~s~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~s~s~dg~v~iwd~~~~  230 (500)
                      +.+++.+|++|+.|++|++||.+++...    ...+.+|...|.+++|+|....   .+++.|++||.|++|+|||++++
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence            3445668999999999999999887542    2357899999999999985432   24568999999999999999998


Q ss_pred             eEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCC
Q 010816          231 KCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (500)
Q Consensus       231 ~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (500)
                      .++..+.+|..+|.+++|+|++  .|++|+.|++|++||+++++.......+.......                     
T Consensus       177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~---------------------  235 (393)
T 4gq1_A          177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW---------------------  235 (393)
T ss_dssp             EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC---------------------
T ss_pred             ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce---------------------
Confidence            8888888999999999999875  58999999999999999887654433221110000                     


Q ss_pred             CHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEEC-CCCCEEEEEeCCCcEEEE
Q 010816          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS-PDGQWVASASFDKSIKLW  387 (500)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~s-p~g~~lasgs~Dg~i~lw  387 (500)
                                             ..+.....          ........+|...+.++.|+ |+|+.|++++.|+++++|
T Consensus       236 -----------------------~~s~~~~~----------~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vw  282 (393)
T 4gq1_A          236 -----------------------LLTLNTLP----------LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRW  282 (393)
T ss_dssp             -----------------------SEEEESGG----------GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEE
T ss_pred             -----------------------EEeccccc----------ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEE
Confidence                                   00000000          00111234677888899986 799999999999999999


Q ss_pred             eCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC-CCCEEEEEECCCcEEEEECCCcccccc
Q 010816          388 NGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVWDIRTQKLKQD  466 (500)
Q Consensus       388 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iwd~~~~~~~~~  466 (500)
                      |+.+++....+.+|...+..+.+..-..        .............+.+ ++.++++|+.||.|+|||+.+++....
T Consensus       283 d~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~  354 (393)
T 4gq1_A          283 NLFANNDYNEISDSTMKLGPKNLLPNVQ--------GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI  354 (393)
T ss_dssp             EC-------------------CCSCSEE--------EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE
T ss_pred             ECccCCCCceEeeecCccccEEEccccc--------cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence            9999988888888887776654421100        0000011111112222 455777888999999999999988888


Q ss_pred             ccCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 010816          467 LPGHADEVFAVDWSPDGEKVASGGKDRVL  495 (500)
Q Consensus       467 ~~~h~~~V~~l~~s~dg~~l~s~~~D~~v  495 (500)
                      +.+|...|.+++|||||++||+++.||.+
T Consensus       355 ~~~~~~~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          355 PIQLGMPIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            88899999999999999999999998854

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-34  Score=274.67  Aligned_cols=251  Identities=20%  Similarity=0.353  Sum_probs=206.2

Q ss_pred             eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc-ccccccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816          142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (500)
Q Consensus       142 ~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg  220 (500)
                      ++..+.+|.+.|.+++|+|++++|++|+.||.|++||+..+.. ....+.+|...|.++.|.+..   ++..+++++.||
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~l~s~~~dg   79 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK---FGTILASCSYDG   79 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEETTS
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC---CCCEEEEeccCC
Confidence            3455779999999999999999999999999999999974321 223567899999999997531   246899999999


Q ss_pred             cEEEEECCCCe--EEEEecCccccEEEEEeCCC--C-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816          221 DARIWDVSLRK--CVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (500)
Q Consensus       221 ~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~--~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (500)
                      .|++||+..++  .+..+.+|...|.+++|+++  + .+++++.|+.|++||+.++....                    
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--------------------  139 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS--------------------  139 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC--------------------
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee--------------------
Confidence            99999999887  77788899999999999987  4 68899999999999987642110                    


Q ss_pred             eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-----
Q 010816          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-----  370 (500)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-----  370 (500)
                                                                               ...+.+|...|.+++|+|     
T Consensus       140 ---------------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A          140 ---------------------------------------------------------PIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             ---------------------------------------------------------EEEEECCTTCEEEEEECCCC---
T ss_pred             ---------------------------------------------------------eEEecCCCCceEEEEEcCccccc
Confidence                                                                     011234556677777777     


Q ss_pred             --------CCCEEEEEeCCCcEEEEeCCCCc----eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816          371 --------DGQWVASASFDKSIKLWNGTTGK----FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS  438 (500)
Q Consensus       371 --------~g~~lasgs~Dg~i~lwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  438 (500)
                              ++.+|++|+.||.|++||++++.    ++..+.+|..+|.++                           +|+
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~---------------------------~~s  215 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV---------------------------AWS  215 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE---------------------------EEC
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE---------------------------EEC
Confidence                    79999999999999999998764    456778899888877                           568


Q ss_pred             CC---CCEEEEEECCCcEEEEECCCcc-----ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          439 AD---SRLLLSGSKDSTLKVWDIRTQK-----LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       439 ~~---~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |+   +.+|++++.||.|++||+++++     .......|...|++++|+|+|++|++++.||.|++|+
T Consensus       216 p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          216 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             CCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            99   8999999999999999998863     2233445888999999999999999999999999997

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6e-34  Score=276.54  Aligned_cols=284  Identities=22%  Similarity=0.326  Sum_probs=228.2

Q ss_pred             EEEEEEcCCCCeE-EEEeCCCcEEEEeCCCC----ceeEEecCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCc
Q 010816          111 VLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQ----TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKP  184 (500)
Q Consensus       111 V~~~~~sp~~~~l-at~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd~~~~~~  184 (500)
                      ...++++|+...+ ++++.||.|+||++...    ..+..+.+|.+.|.+++|+| ++++|++|+.||+|++||+.++..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            3458888887644 46789999999999654    23445678999999999999 899999999999999999988742


Q ss_pred             ------ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe--cCccccEEEEEeCCCC-eEE
Q 010816          185 ------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIY  255 (500)
Q Consensus       185 ------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~-~l~  255 (500)
                            ....+.+|...|.++.|+|..    ...+++++.|+.|++||+++++++..+  .+|...|.+++|++++ .|+
T Consensus       117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  192 (402)
T 2aq5_A          117 VLPLREPVITLEGHTKRVGIVAWHPTA----QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC  192 (402)
T ss_dssp             SSCBCSCSEEEECCSSCEEEEEECSSB----TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred             ccccCCceEEecCCCCeEEEEEECcCC----CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence                  223467899999999998742    247999999999999999999999999  8999999999999887 689


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEe-ecCCce-EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816          256 TGSQDCTIKVWETTQGKLIREL-KGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (500)
                      +++.|+.|++||+++++.+..+ ..|... +..+.++++                                    +..++
T Consensus       193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~l~  236 (402)
T 2aq5_A          193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE------------------------------------GKILT  236 (402)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST------------------------------------TEEEE
T ss_pred             EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC------------------------------------CcEEE
Confidence            9999999999999999998888 667654 777777664                                    34577


Q ss_pred             Ee---eCCCeEEEEcCCCCCCCcee-eecccCcEEEEEECCCCCEEE-EEeCCCcEEEEeCCCCce-EEEEeCC--cccE
Q 010816          334 SG---SDDFTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVA-SASFDKSIKLWNGTTGKF-VAVFRGH--VGPV  405 (500)
Q Consensus       334 s~---s~d~~v~~wd~~~~~~~~~~-~~~h~~~v~~l~~sp~g~~la-sgs~Dg~i~lwd~~~~~~-~~~~~~h--~~~v  405 (500)
                      +|   +.|+.|++||......+... ...|...+.+++|+|++++|+ +|+.||.|++||+.+++. +..+..|  ..++
T Consensus       237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v  316 (402)
T 2aq5_A          237 TGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQ  316 (402)
T ss_dssp             EEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCC
T ss_pred             EeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcc
Confidence            77   78999999998775543333 336778899999999999986 455799999999998873 4444433  3555


Q ss_pred             EEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc
Q 010816          406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL  463 (500)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~  463 (500)
                      .++                           +|+|++.++++  .|+.+++|++.+++.
T Consensus       317 ~~~---------------------------~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          317 RGM---------------------------GYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             SEE---------------------------EECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             cce---------------------------EEeccccccee--cceeEEEEEcCCCcE
Confidence            444                           67999988874  567999999877543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.4e-33  Score=273.40  Aligned_cols=264  Identities=16%  Similarity=0.203  Sum_probs=216.9

Q ss_pred             ccccccCCcccEEEEEEcCC----C---CeEEEEeCCCcEEEEeCCCCce-----eEEecCC-----CCCEEEEEEc---
Q 010816          100 CSATIAGHTEAVLSVAFSPD----G---RQLASGSGDTTVRLWDLNTQTP-----MFKCTGH-----KNWVLCIAWS---  159 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~----~---~~lat~~~d~~i~iwd~~~~~~-----~~~~~~h-----~~~v~~v~~s---  159 (500)
                      +...+.+|...|.+++|+|+    +   ++|++++.|+.|++||+.++..     +..+.+|     ...|.+++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            45567899999999999999    9   9999999999999999988876     7788888     5999999999   


Q ss_pred             -CCCCE-EEEEeCCCeEEEEeCCC------CCcccc----cc-------cCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816          160 -ADGKH-LVSGSKAGELQCWDPQT------GKPSGN----PL-------SGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (500)
Q Consensus       160 -~~~~~-l~s~~~d~~i~~wd~~~------~~~~~~----~~-------~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg  220 (500)
                       |++++ |++++.|+.|++||+.+      ++....    .+       ..|...+.++.|.|     ++ .+++++.|+
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~-~l~~~~~dg  207 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-----RG-LIATGFNNG  207 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-----TS-EEEEECTTS
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-----Cc-eEEEEeCCC
Confidence             99999 99999999999999987      554330    22       45788899999976     44 899999999


Q ss_pred             cEEEEECCCCeEEEEecC---c---cccEEEEEeCCCC-eEEEEeCC---CeEEEEeCCCCeeEEEeecCCceEEEEEec
Q 010816          221 DARIWDVSLRKCVICLSG---H---TLAVTCVKWGGDG-VIYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~~---h---~~~v~~~~~~~~~-~l~t~~~d---g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~  290 (500)
                      .|++||+++++.+..+..   |   ...|.+++|++++ .|++++.|   +.|++||+++++.+..+......       
T Consensus       208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~-------  280 (397)
T 1sq9_A          208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS-------  280 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----------
T ss_pred             cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc-------
Confidence            999999999999999998   9   9999999999876 68889999   99999999988766554321000       


Q ss_pred             CcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC
Q 010816          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (500)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp  370 (500)
                                                             .                    ........|...|.+++|+|
T Consensus       281 ---------------------------------------~--------------------~~~~~~~~~~~~v~~~~~~~  301 (397)
T 1sq9_A          281 ---------------------------------------S--------------------QASLGEFAHSSWVMSLSFND  301 (397)
T ss_dssp             ----------------------------------------------------------------CCBSBSSCEEEEEECS
T ss_pred             ---------------------------------------c--------------------cccccccccCCcEEEEEECC
Confidence                                                   0                    00001224778899999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEEe------CC---------------cccEEEEEeeeeeeecCCCCceeeeecc
Q 010816          371 DGQWVASASFDKSIKLWNGTTGKFVAVFR------GH---------------VGPVYQIRFELIYCFRYPSNFYCVVDMS  429 (500)
Q Consensus       371 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~------~h---------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~  429 (500)
                      ++++|++++.||.|++||+.+++.+..+.      +|               ..+|.++                     
T Consensus       302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~---------------------  360 (397)
T 1sq9_A          302 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV---------------------  360 (397)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE---------------------
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE---------------------
Confidence            99999999999999999999999999999      77               7777766                     


Q ss_pred             ccceeeEEcCCC----------CEEEEEECCCcEEEEECCCcc
Q 010816          430 CCMSLYSWSADS----------RLLLSGSKDSTLKVWDIRTQK  462 (500)
Q Consensus       430 ~~~~~~~~s~~~----------~~l~s~s~d~~v~iwd~~~~~  462 (500)
                            +|+|++          ++|++|+.||.|++||+++++
T Consensus       361 ------~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          361 ------KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             ------EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ------EeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                  678998          799999999999999987653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-34  Score=279.20  Aligned_cols=243  Identities=16%  Similarity=0.197  Sum_probs=196.3

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEE
Q 010816          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW  225 (500)
Q Consensus       147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iw  225 (500)
                      ..+.++|.+++|+|++++|++|+.|+.|++||+.++. .....+.+|...|.++.|+|     ++.++++++.|+.|++|
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-----~~~~l~s~s~d~~v~vw   82 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-----KSNRIVTCSQDRNAYVY   82 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-----TTCCEEEEETTSSEEEC
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-----CCCEEEEEeCCCeEEEE
Confidence            3467789999999999999999999999999998873 33346788999999999987     34689999999999999


Q ss_pred             ECCCCe---EEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816          226 DVSLRK---CVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD  301 (500)
Q Consensus       226 d~~~~~---~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (500)
                      |+.+++   ....+.+|...|.+++|++++ .|++++.|+.|++||+.+++..                           
T Consensus        83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------------------------  135 (377)
T 3dwl_C           83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW---------------------------  135 (377)
T ss_dssp             ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C---------------------------
T ss_pred             EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc---------------------------
Confidence            999877   677788999999999999876 6889999999999998654310                           


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec-ccCcEEEEEECCCCCEEEEEeC
Q 010816          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASF  380 (500)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~lasgs~  380 (500)
                                                                       .....+.+ |...|.+++|+|++++|++++.
T Consensus       136 -------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C          136 -------------------------------------------------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             -------------------------------------------------CCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred             -------------------------------------------------eeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence                                                             00112233 7788999999999999999999


Q ss_pred             CCcEEEEeCCC------------------CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC
Q 010816          381 DKSIKLWNGTT------------------GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR  442 (500)
Q Consensus       381 Dg~i~lwd~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  442 (500)
                      |+.|++||+..                  ++++..+ +|.+.+.++                           +|+|+++
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~---------------------------~~sp~~~  218 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV---------------------------GFSPSGN  218 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE---------------------------EECTTSS
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE---------------------------EECCCCC
Confidence            99999999853                  4455555 777777666                           6799999


Q ss_pred             EEEEEECCCcEEEEECCCccc----cccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          443 LLLSGSKDSTLKVWDIRTQKL----KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       443 ~l~s~s~d~~v~iwd~~~~~~----~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      +|++++.|+.|++||+++++.    +..+.+|...|.+++|+|+|++|++++.|+.+.+|
T Consensus       219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  278 (377)
T 3dwl_C          219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQ  278 (377)
T ss_dssp             CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred             EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence            999999999999999999887    78889999999999999999999999888877444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-34  Score=269.51  Aligned_cols=278  Identities=12%  Similarity=0.077  Sum_probs=216.2

Q ss_pred             EEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCccc
Q 010816          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK  194 (500)
Q Consensus       115 ~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  194 (500)
                      .+.+++.+|++|+.||+|++||+.+++.+..+.  ...|.++.|+|+   +++++.|++|++|+...             
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-------------  104 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN-------------  104 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-------------
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-------------
Confidence            445678899999999999999999988877665  466788888887   99999999999998642             


Q ss_pred             ceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEeCC--CC-eEEEEeCCCeEEEEeCCC
Q 010816          195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGG--DG-VIYTGSQDCTIKVWETTQ  270 (500)
Q Consensus       195 ~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~--~~-~l~t~~~dg~i~lwd~~~  270 (500)
                                                .+.+||+.+++.+..+. +|...|.++.|++  ++ .+++++.||+|++||+++
T Consensus       105 --------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~  158 (343)
T 3lrv_A          105 --------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED  158 (343)
T ss_dssp             --------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS
T ss_pred             --------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC
Confidence                                      34667777777555544 7778999999998  65 688899999999999999


Q ss_pred             CeeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC
Q 010816          271 GKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (500)
Q Consensus       271 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~  349 (500)
                      ++.+.... .+...+.+++++|+                                    +..+++|+.|+.|++||++..
T Consensus       159 ~~~~~~~~~~~~~~i~~~~~~pd------------------------------------g~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          159 DSQYIVHSAKSDVEYSSGVLHKD------------------------------------SLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             SCEEEEECCCSSCCCCEEEECTT------------------------------------SCEEEEECTTSCEEEEESSCT
T ss_pred             CcEEEEEecCCCCceEEEEECCC------------------------------------CCEEEEEcCCCEEEEEECCCC
Confidence            98876663 34557888888875                                    357899999999999999876


Q ss_pred             CCCceeeec-ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeec
Q 010816          350 KQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM  428 (500)
Q Consensus       350 ~~~~~~~~~-h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  428 (500)
                      ......+.+ |...|++++|+|+|.+|++++ |+.|++||+++++.+..+..+......+.                   
T Consensus       203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~-------------------  262 (343)
T 3lrv_A          203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTG-------------------  262 (343)
T ss_dssp             TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----C-------------------
T ss_pred             CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccccccc-------------------
Confidence            655355666 999999999999999999999 45999999998876544443221111100                   


Q ss_pred             cccceeeEEcCCCCEEEEEEC-CCcEEEEECCCccccccccCcccCEEEEEEcC---CCCEEEEEeCCCcEEEec
Q 010816          429 SCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP---DGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       429 ~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~---dg~~l~s~~~D~~v~iW~  499 (500)
                         ...++|+|+|++|++++. |+.|++|++.+.......    ..+..+.|+|   +++.|++++.|+.++++.
T Consensus       263 ---~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          263 ---TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             ---CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             ---ceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence               022478999999999998 999999998665432221    4577888998   889999999999998863

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-33  Score=274.06  Aligned_cols=300  Identities=17%  Similarity=0.114  Sum_probs=221.9

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc---eeEEec--------------------------------------
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCT--------------------------------------  147 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~---~~~~~~--------------------------------------  147 (500)
                      .++.+++|+|+|++|+++ .++.|++||+.+++   .+..+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478899999999976666 57799999998887   444433                                      


Q ss_pred             ----------------CCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCC--CCCccccccc--CcccceEEEEeeeeec
Q 010816          148 ----------------GHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQ--TGKPSGNPLS--GHKKWITGISWEPVHL  206 (500)
Q Consensus       148 ----------------~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~--~~~~~~~~~~--~~~~~v~~~~~~~~~~  206 (500)
                                      +|.+.|.+++|+|++++| ++++.|+.|++||+.  +++.... +.  .|...|.++.|+|   
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~v~~~~~sp---  159 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKL-RKRFCFSKRPNAISIAE---  159 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEE-EEEEECSSCEEEEEECT---
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeee-eecccCCCCceEEEEcC---
Confidence                            234479999999999996 899999999999998  6665432 33  5668899999987   


Q ss_pred             CCCCceEEEEeCCCcEEEEECCCCeEEE----EecCccccEEEEEeCCC---C-eEEEEeCCCeEEEEeCCCCeeEEEee
Q 010816          207 NAPCRRFVSASKDGDARIWDVSLRKCVI----CLSGHTLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKLIRELK  278 (500)
Q Consensus       207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~---~-~l~t~~~dg~i~lwd~~~~~~~~~~~  278 (500)
                        ++..+++|+.||.+++|++..+....    .+.+|...|.+++|+++   + .|++|+.|+.|++||+.+++.+..  
T Consensus       160 --~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--  235 (450)
T 2vdu_B          160 --DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK--  235 (450)
T ss_dssp             --TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE--
T ss_pred             --CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee--
Confidence              45689999999999999998776443    67789999999999998   6 688999999999999876543221  


Q ss_pred             cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec
Q 010816          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG  358 (500)
Q Consensus       279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~  358 (500)
                                                                                                  .+.+
T Consensus       236 ----------------------------------------------------------------------------~~~~  239 (450)
T 2vdu_B          236 ----------------------------------------------------------------------------WLFG  239 (450)
T ss_dssp             ----------------------------------------------------------------------------ECCC
T ss_pred             ----------------------------------------------------------------------------eecC
Confidence                                                                                        1236


Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce--eeeeccccceeeE
Q 010816          359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY--CVVDMSCCMSLYS  436 (500)
Q Consensus       359 h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  436 (500)
                      |...|.+++|+ ++++|++|+.|+.|++||+.+++++..+..+... ..+.+..   ...+..+.  ........+..++
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~v~~i~  314 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLI-KPYLNDQ---HLAPPRFQNENNDIIEFAVSKII  314 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHH-GGGCCTT---SBC----------CBCCCEEEEE
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhh-hhhhhhc---ccccccccccccccceEEEEEEE
Confidence            77889999999 9999999999999999999999988877643210 0000000   00000000  0001122345568


Q ss_pred             EcCCCCEEEEEE-CCCcEEEEEC--CCc---cccccccCcccCEEEEEEcCCCCEEEEEeC------CCcEEEec
Q 010816          437 WSADSRLLLSGS-KDSTLKVWDI--RTQ---KLKQDLPGHADEVFAVDWSPDGEKVASGGK------DRVLKLWM  499 (500)
Q Consensus       437 ~s~~~~~l~s~s-~d~~v~iwd~--~~~---~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~------D~~v~iW~  499 (500)
                      |+|++++|++++ .|+.|++|++  ..+   +.+..+.+| +.|.+++|+|++.+++.++.      +..|++|.
T Consensus       315 ~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~  388 (450)
T 2vdu_B          315 KSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE  388 (450)
T ss_dssp             ECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred             EeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence            899999999999 8999999999  555   566677788 88999999996533333343      45578774

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=295.64  Aligned_cols=248  Identities=23%  Similarity=0.423  Sum_probs=202.3

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCceeEEecCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEE
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCW  177 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~--~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~~w  177 (500)
                      ..+.||.+.|++++|+|++++|++|+.||+|+|||+.  +......+.+|.++|.+++|+|+  +++|++|+.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4578999999999999999999999999999999997  44566778899999999999988  8999999999999999


Q ss_pred             eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC--C-eE
Q 010816          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--G-VI  254 (500)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l  254 (500)
                      |+.+++.                                              ..+..+.+|...|.++.|+++  + .+
T Consensus        83 d~~~~~~----------------------------------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l  116 (753)
T 3jro_A           83 KEENGRW----------------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPLL  116 (753)
T ss_dssp             EEETTEE----------------------------------------------EEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             ECCCCcc----------------------------------------------cccccccCCCCCeEEEEECCCCCCCEE
Confidence            8765421                                              012234568888999999986  4 68


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (500)
Q Consensus       255 ~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (500)
                      ++|+.||.|++||++++...                                                            
T Consensus       117 ~sgs~dg~I~vwdl~~~~~~------------------------------------------------------------  136 (753)
T 3jro_A          117 LVASSDGKVSVVEFKENGTT------------------------------------------------------------  136 (753)
T ss_dssp             EEEETTSEEEEEECCSSSCC------------------------------------------------------------
T ss_pred             EEEeCCCcEEEEEeecCCCc------------------------------------------------------------
Confidence            89999999999998764211                                                            


Q ss_pred             eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-------------CCCEEEEEeCCCcEEEEeCCCC----ceEEE
Q 010816          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-------------DGQWVASASFDKSIKLWNGTTG----KFVAV  397 (500)
Q Consensus       335 ~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-------------~g~~lasgs~Dg~i~lwd~~~~----~~~~~  397 (500)
                                       ....+.+|...|.+++|+|             ++.+|++|+.||.|++||+.++    .....
T Consensus       137 -----------------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~  199 (753)
T 3jro_A          137 -----------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST  199 (753)
T ss_dssp             -----------------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred             -----------------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence                             0112235566677777777             6899999999999999999877    55677


Q ss_pred             EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC---CCEEEEEECCCcEEEEECCCcc-----ccccccC
Q 010816          398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD---SRLLLSGSKDSTLKVWDIRTQK-----LKQDLPG  469 (500)
Q Consensus       398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~~  469 (500)
                      +.+|.++|.++                           +|+|+   +.+|++|+.||.|++||+.+++     ......+
T Consensus       200 ~~~h~~~V~~l---------------------------~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~  252 (753)
T 3jro_A          200 LEGHSDWVRDV---------------------------AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK  252 (753)
T ss_dssp             ECCCSSCEEEE---------------------------EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSC
T ss_pred             ecCCCCcEEEE---------------------------EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCC
Confidence            88999998887                           56899   8999999999999999998864     3344556


Q ss_pred             cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          470 HADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       470 h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |.+.|++++|+|+|++|++|+.||.|++|+
T Consensus       253 ~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          253 FPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             CSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             CCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence            889999999999999999999999999997

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-34  Score=277.04  Aligned_cols=259  Identities=10%  Similarity=0.135  Sum_probs=207.7

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC
Q 010816          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (500)
Q Consensus       148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~  227 (500)
                      ....+|.+|+|+|||+++||++.|++|+  |...++.    +.+|...|.+++|+|..            .++.+.+|+ 
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~----l~gh~~~v~~V~FsPdg------------~~~~~~~~~-   73 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD----INCNSKNLFHVKEFPLE------------FENKLDFEL-   73 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC----CSSBGGGTEEEEEECCC------------CCCTTTTSC-
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccce----ecCCCccEEEEEECCCC------------CcceEEEEe-
Confidence            4567899999999999999999999999  7666543    47899999999998732            344444444 


Q ss_pred             CCCeEEEEec-CccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCc-----eEEEEEecCcceeeeccc
Q 010816          228 SLRKCVICLS-GHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGH-----WVNSLALSTEYALRTGAF  300 (500)
Q Consensus       228 ~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~  300 (500)
                        +++...+. +|...|.+++|+|+|. |++++.||.|++||...  .+..+. |..     .+.+++++|+        
T Consensus        74 --~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPD--------  140 (588)
T 2j04_A           74 --AQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPI--------  140 (588)
T ss_dssp             --CCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSS--------
T ss_pred             --CCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCC--------
Confidence              33322333 5688899999999985 99999999999999543  566666 554     4999999986        


Q ss_pred             cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC------Cceee----ecccCcEEEEEECC
Q 010816          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ------PKTRM----TGHQQLVNHVYFSP  370 (500)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~------~~~~~----~~h~~~v~~l~~sp  370 (500)
                                                  +..+++|+.||+|++||+.....      ....+    .+|.++|.+++|+|
T Consensus       141 ----------------------------G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP  192 (588)
T 2j04_A          141 ----------------------------ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE  192 (588)
T ss_dssp             ----------------------------SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred             ----------------------------CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence                                        45799999999999999876532      12333    67889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCce---EEEEe-CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816          371 DGQWVASASFDKSIKLWNGTTGKF---VAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS  446 (500)
Q Consensus       371 ~g~~lasgs~Dg~i~lwd~~~~~~---~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  446 (500)
                      ||  +++++.|++|++||+.+++.   ..+++ +|...|.++                           +|+  |+.||+
T Consensus       193 dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv---------------------------aFs--g~~LAS  241 (588)
T 2j04_A          193 DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL---------------------------KIV--DYKVVL  241 (588)
T ss_dssp             TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE---------------------------EEE--TTEEEE
T ss_pred             Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE---------------------------EEE--CCEEEE
Confidence            99  88899999999999988773   35564 777777666                           567  689998


Q ss_pred             EECCCcEEEEECCCccccccccCcccCEEEEEE--cCCCCEEEEEeCCCcEEEec
Q 010816          447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW--SPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       447 ~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~--s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ++ +++|++||+.+++......+|.+.|+.++|  +||+..|++++.||+ ++|.
T Consensus       242 a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          242 TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence            87 699999999988774333389999999999  999999999999999 9995

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-32  Score=259.62  Aligned_cols=255  Identities=16%  Similarity=0.269  Sum_probs=216.9

Q ss_pred             cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-----Ce
Q 010816           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-----GE  173 (500)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-----~~  173 (500)
                      .+...+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...|.+++|+|++++|++++.+     +.
T Consensus        65 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~  143 (369)
T 3zwl_B           65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGS  143 (369)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred             hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence            4556788999999999999999999999999999999999998887776 88999999999999999999999     99


Q ss_pred             EEEEeCCCCCccc----------ccccCccc--ceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEEEEecCcc
Q 010816          174 LQCWDPQTGKPSG----------NPLSGHKK--WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHT  240 (500)
Q Consensus       174 i~~wd~~~~~~~~----------~~~~~~~~--~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~h~  240 (500)
                      |++||+..+....          ..+..|..  .+.++.|.|     ++..+++++.||.|++||+++ .+.+..+..|.
T Consensus       144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  218 (369)
T 3zwl_B          144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-----KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE  218 (369)
T ss_dssp             EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-----GGCEEEEEETTSEEEEEETTTTTEEEEEEECCS
T ss_pred             EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-----CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC
Confidence            9999987664321          12234444  788888877     346899999999999999998 78888899999


Q ss_pred             ccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816          241 LAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (500)
Q Consensus       241 ~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (500)
                      ..|.++.|++++ .|++++.|+.|++||+.+++.+..+.                                         
T Consensus       219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-----------------------------------------  257 (369)
T 3zwl_B          219 KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-----------------------------------------  257 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----------------------------------------
T ss_pred             CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-----------------------------------------
Confidence            999999999887 58889999999999998766544322                                         


Q ss_pred             hhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC--------------cEE
Q 010816          320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--------------SIK  385 (500)
Q Consensus       320 ~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg--------------~i~  385 (500)
                                                             +...+.+++|+|+++++++++.++              .++
T Consensus       258 ---------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~  298 (369)
T 3zwl_B          258 ---------------------------------------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR  298 (369)
T ss_dssp             ---------------------------------------CSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred             ---------------------------------------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence                                                   233467788888888888888877              899


Q ss_pred             EEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc
Q 010816          386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ  465 (500)
Q Consensus       386 lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~  465 (500)
                      +||..+++.+..+.+|.+.|.++                           +|+|++++|++++.||.|++|+++.+....
T Consensus       299 ~~d~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  351 (369)
T 3zwl_B          299 FYHKIFEEEIGRVQGHFGPLNTV---------------------------AISPQGTSYASGGEDGFIRLHHFEKSYFDF  351 (369)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEE---------------------------EECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred             EEecCCCcchhheecccCcEEEE---------------------------EECCCCCEEEEEcCCCeEEEEECccccchh
Confidence            99999999999999999999887                           569999999999999999999998765544


Q ss_pred             c
Q 010816          466 D  466 (500)
Q Consensus       466 ~  466 (500)
                      .
T Consensus       352 ~  352 (369)
T 3zwl_B          352 K  352 (369)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.1e-33  Score=268.78  Aligned_cols=244  Identities=20%  Similarity=0.309  Sum_probs=204.7

Q ss_pred             CcccEEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 010816          107 HTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       107 h~~~V~~~~~sp~----~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      |.+.|.+++|+|+    +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            6788999999999    67999999999999999999999999999999999999999 899999999999999999998


Q ss_pred             CCccccc--ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-----------------------
Q 010816          182 GKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-----------------------  236 (500)
Q Consensus       182 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-----------------------  236 (500)
                      ++.....  +.+|...|.++.|+|     ++..+++++.|+.|++||+++++....+                       
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDL-----LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP  222 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred             CeEEEEecccccccCceeEEEECC-----CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence            8654432  268999999999987     4568999999999999999876544322                       


Q ss_pred             -----cCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCee--------------EEEeecCCceEEEEEecCcceeee
Q 010816          237 -----SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL--------------IRELKGHGHWVNSLALSTEYALRT  297 (500)
Q Consensus       237 -----~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~  297 (500)
                           .+|...|.++.|+ ...+++++.|+.|++||+.++..              +..+..|...|.+++++++.    
T Consensus       223 ~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----  297 (366)
T 3k26_A          223 DFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF----  297 (366)
T ss_dssp             SEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT----
T ss_pred             ccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC----
Confidence                 3489999999999 56899999999999999887643              55666666666666665530    


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC---Cceeeecc--cCcEEEEEECCCC
Q 010816          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGH--QQLVNHVYFSPDG  372 (500)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~---~~~~~~~h--~~~v~~l~~sp~g  372 (500)
                                                    .+..+++|+.|+.|++||+.....   ....+.+|  ...|++++|+|++
T Consensus       298 ------------------------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  347 (366)
T 3k26_A          298 ------------------------------WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS  347 (366)
T ss_dssp             ------------------------------TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred             ------------------------------CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence                                          145799999999999999876542   22356666  7899999999999


Q ss_pred             CEEEEEeCCCcEEEEeCC
Q 010816          373 QWVASASFDKSIKLWNGT  390 (500)
Q Consensus       373 ~~lasgs~Dg~i~lwd~~  390 (500)
                      ++|++++.||.|++||+.
T Consensus       348 ~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          348 SILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SEEEEEETTSEEEEEEC-
T ss_pred             CeEEEEeCCCEEEEEEec
Confidence            999999999999999975

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.4e-32  Score=267.50  Aligned_cols=246  Identities=22%  Similarity=0.412  Sum_probs=210.5

Q ss_pred             cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC----------CeEEEEecCccccEEEEEeCCCC--eEE
Q 010816          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----------RKCVICLSGHTLAVTCVKWGGDG--VIY  255 (500)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~--~l~  255 (500)
                      ....|...|++++|.|..    ...+++++.||.|++||+..          ...+..+.+|...|.+++|++++  .|+
T Consensus       123 ~~~~h~~~v~~l~~~p~~----~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQN----ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             EEEEESSCCSEEEEETTE----EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred             EEEcCCCcEEEEEECCCC----CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence            356788999999998732    35799999999999999986          56778888999999999999875  699


Q ss_pred             EEeCCCeEEEEeCCCCee-------EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816          256 TGSQDCTIKVWETTQGKL-------IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (500)
                      +|+.||.|++||+..+..       ...+..|...|.++++++..                                   
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-----------------------------------  243 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-----------------------------------  243 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-----------------------------------
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-----------------------------------
Confidence            999999999999987422       35567888899999988731                                   


Q ss_pred             CcEEEEeeCCCeEEEEcCCCCC--CCceeeecccCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCC-CceEEEEeCCccc
Q 010816          329 PERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTT-GKFVAVFRGHVGP  404 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~~--~~~~~~~~h~~~v~~l~~sp~g~-~lasgs~Dg~i~lwd~~~-~~~~~~~~~h~~~  404 (500)
                      ...+++++.|+.|++||++...  .....+..|...|++++|+|++. +|++|+.||.|++||+++ +..+..+.+|.++
T Consensus       244 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~  323 (430)
T 2xyi_A          244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE  323 (430)
T ss_dssp             TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC
T ss_pred             CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC
Confidence            3578999999999999988653  45556778999999999999986 799999999999999998 5678889999999


Q ss_pred             EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEECCCcEEEEECCC--------------ccccccccC
Q 010816          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVWDIRT--------------QKLKQDLPG  469 (500)
Q Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s~d~~v~iwd~~~--------------~~~~~~~~~  469 (500)
                      +.++                           +|+|++. +|++++.|+.|+|||+..              .+++..+.+
T Consensus       324 v~~i---------------------------~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (430)
T 2xyi_A          324 IFQV---------------------------QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG  376 (430)
T ss_dssp             EEEE---------------------------EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC
T ss_pred             EEEE---------------------------EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC
Confidence            8887                           5689885 799999999999999987              355667788


Q ss_pred             cccCEEEEEEcCCCC-EEEEEeCCCcEEEec
Q 010816          470 HADEVFAVDWSPDGE-KVASGGKDRVLKLWM  499 (500)
Q Consensus       470 h~~~V~~l~~s~dg~-~l~s~~~D~~v~iW~  499 (500)
                      |.+.|.+++|+|+++ .|++++.|+.|++|+
T Consensus       377 h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          377 HTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             CCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence            999999999999999 899999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.7e-33  Score=272.56  Aligned_cols=248  Identities=16%  Similarity=0.337  Sum_probs=196.9

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc----------ccccccCcc------------cceEEEEeeeee
Q 010816          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----------SGNPLSGHK------------KWITGISWEPVH  205 (500)
Q Consensus       148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~----------~~~~~~~~~------------~~v~~~~~~~~~  205 (500)
                      .|.+.|.+++|+|+|++||+|+.||.|++||+.+++.          ....+.+|.            ..|.++.|.|..
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            3678999999999999999999999999999987752          223466887            889999998742


Q ss_pred             cCCCCceEEEEeCCCcEEEEECCCCeEE---------------------------------------EE-ecCccccEEE
Q 010816          206 LNAPCRRFVSASKDGDARIWDVSLRKCV---------------------------------------IC-LSGHTLAVTC  245 (500)
Q Consensus       206 ~~~~~~~~~s~s~dg~v~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~  245 (500)
                         ....+++++.|+.|++||+..+...                                       .. ..+|...|.+
T Consensus       106 ---~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          106 ---NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             ---SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             ---CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence               1157999999999999998765432                                       12 3678899999


Q ss_pred             EEeCCCCe-EEEEeCCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhh
Q 010816          246 VKWGGDGV-IYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (500)
Q Consensus       246 ~~~~~~~~-l~t~~~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (500)
                      ++|++++. |++| .|+.|++||+.++. .+..                                               
T Consensus       183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~-----------------------------------------------  214 (447)
T 3dw8_B          183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNI-----------------------------------------------  214 (447)
T ss_dssp             EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEE-----------------------------------------------
T ss_pred             EEEcCCCCEEEEe-CCCeEEEEECCCCCceeee-----------------------------------------------
Confidence            99998874 5565 79999999987322 1111                                               


Q ss_pred             hcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCce----EEEE
Q 010816          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKF----VAVF  398 (500)
Q Consensus       324 ~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~----~~~~  398 (500)
                                          .+..     ...+.+|...|.+++|+|++ .+|++|+.||.|++||+++++.    +..+
T Consensus       215 --------------------~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  269 (447)
T 3dw8_B          215 --------------------VDIK-----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF  269 (447)
T ss_dssp             --------------------EECC-----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE
T ss_pred             --------------------eecc-----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe
Confidence                                1100     01345788899999999998 9999999999999999999887    7888


Q ss_pred             eCCcc------------cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC-ccccc
Q 010816          399 RGHVG------------PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT-QKLKQ  465 (500)
Q Consensus       399 ~~h~~------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~-~~~~~  465 (500)
                      .+|..            .+.++                           +|+|+|++|++++. +.|++||+++ ++.+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~  321 (447)
T 3dw8_B          270 EEPEDPSNRSFFSEIISSISDV---------------------------KFSHSGRYMMTRDY-LSVKVWDLNMENRPVE  321 (447)
T ss_dssp             CCC-----CCHHHHHTTCEEEE---------------------------EECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred             ccCCCccccccccccCceEEEE---------------------------EECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence            88876            55555                           67999999999999 9999999997 88888


Q ss_pred             cccCcccC---------------EEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          466 DLPGHADE---------------VFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       466 ~~~~h~~~---------------V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      .+.+|...               ++.++|+|++++|++|+.|+.|++|+
T Consensus       322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd  370 (447)
T 3dw8_B          322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD  370 (447)
T ss_dssp             CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred             eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEE
Confidence            88888631               34599999999999999999999997

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.2e-33  Score=263.38  Aligned_cols=253  Identities=17%  Similarity=0.284  Sum_probs=206.4

Q ss_pred             cCCcccEEEEEEcCC---CCeEEEEeCCCcEEEEeCCCCc-eeEEecCCCCCEEEEEE------cCCCCEEEEEeCCCeE
Q 010816          105 AGHTEAVLSVAFSPD---GRQLASGSGDTTVRLWDLNTQT-PMFKCTGHKNWVLCIAW------SADGKHLVSGSKAGEL  174 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~---~~~lat~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~------s~~~~~l~s~~~d~~i  174 (500)
                      .+|.+.|.+++|+|+   +++|++|+.|+.|++||+.++. ++..+.+|...|.++.|      +|++++|++++.|+.|
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i  141 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV  141 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence            379999999999999   6999999999999999999887 78889999999999954      7899999999999999


Q ss_pred             EEEeCCCCCcccccccCcc----cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC
Q 010816          175 QCWDPQTGKPSGNPLSGHK----KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (500)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~  250 (500)
                      ++||+.+++.....+..|.    ..+.++.|.+. ++.++..+++++.|+.|++||+++++... ...|...|.++.|++
T Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA-YNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDR  219 (357)
T ss_dssp             EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC-CC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESC
T ss_pred             EEEeCCCCCCcceeccccCCCCCCceEEEEEEec-cCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCC
Confidence            9999998763333343333    37888885441 22356789999999999999999988754 357888999999997


Q ss_pred             ---C-CeEEEEeCCCeEEEEeCCCCeeEEEe-----ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816          251 ---D-GVIYTGSQDCTIKVWETTQGKLIREL-----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (500)
Q Consensus       251 ---~-~~l~t~~~dg~i~lwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (500)
                         + ..+++++.||.|++||+++++....+     ..|...|.+++++|+.                            
T Consensus       220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------------------  271 (357)
T 3i2n_A          220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQN----------------------------  271 (357)
T ss_dssp             SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTE----------------------------
T ss_pred             CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCC----------------------------
Confidence               4 47899999999999999877654444     3889999999998752                            


Q ss_pred             hhhcCCCCcEEEEeeCCCeEEEEcCCCCCC------------------CceeeecccCcEEEEEECCCCCEEE-EEeCCC
Q 010816          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQ------------------PKTRMTGHQQLVNHVYFSPDGQWVA-SASFDK  382 (500)
Q Consensus       322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~------------------~~~~~~~h~~~v~~l~~sp~g~~la-sgs~Dg  382 (500)
                             ...+++++.|+.|++||+.....                  ....+.+|...|.+++|+|+|++|+ +++.||
T Consensus       272 -------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~  344 (357)
T 3i2n_A          272 -------RELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ  344 (357)
T ss_dssp             -------EEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             -------CcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence                   12689999999999999764332                  2345678999999999999999998 899999


Q ss_pred             cEEEEeCCCCce
Q 010816          383 SIKLWNGTTGKF  394 (500)
Q Consensus       383 ~i~lwd~~~~~~  394 (500)
                      .|++||+.+.+.
T Consensus       345 ~i~iw~~~~~~~  356 (357)
T 3i2n_A          345 TVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEEEECC---
T ss_pred             cEEEEECCCccc
Confidence            999999987643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.8e-32  Score=263.06  Aligned_cols=252  Identities=15%  Similarity=0.212  Sum_probs=212.8

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee--EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW  177 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~--~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w  177 (500)
                      +...+.+|.+.|.+++|+|++++|++++.|+.|++||+.++...  ..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            45567899999999999999999999999999999999887643  3446799999999999999999999999999999


Q ss_pred             eCCCCCc---ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC------------------CCCeEEEEe
Q 010816          178 DPQTGKP---SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV------------------SLRKCVICL  236 (500)
Q Consensus       178 d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~------------------~~~~~~~~~  236 (500)
                      |+..++.   ......+|...|.++.|.|     ++..+++++.|+.|++||+                  ..++++..+
T Consensus       124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
T 1k8k_C          124 YFEQENDWWVCKHIKKPIRSTVLSLDWHP-----NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES  198 (372)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECT-----TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred             EecCCCcceeeeeeecccCCCeeEEEEcC-----CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence            9987763   2333467889999999987     4468999999999999995                  467888889


Q ss_pred             cCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHH
Q 010816          237 SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (500)
Q Consensus       237 ~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (500)
                      .+|...|.++.|++++ .|++++.|+.|++||+++++.+..+..|...+.+++++++.                      
T Consensus       199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~----------------------  256 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES----------------------  256 (372)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETT----------------------
T ss_pred             CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCC----------------------
Confidence            9999999999999887 78999999999999999999999999999999999988752                      


Q ss_pred             HHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCC--CC-------------------------------CC-------cee
Q 010816          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAV--SK-------------------------------QP-------KTR  355 (500)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~--~~-------------------------------~~-------~~~  355 (500)
                                    ..+++| .|+.+++|+...  ..                               ..       ...
T Consensus       257 --------------~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (372)
T 1k8k_C          257 --------------SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  321 (372)
T ss_dssp             --------------EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             --------------CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence                          245555 999999999765  10                               00       112


Q ss_pred             eecccCcEEEEEEC-CCC---CEEEEEeCCCcEEEEeCCCCc
Q 010816          356 MTGHQQLVNHVYFS-PDG---QWVASASFDKSIKLWNGTTGK  393 (500)
Q Consensus       356 ~~~h~~~v~~l~~s-p~g---~~lasgs~Dg~i~lwd~~~~~  393 (500)
                      ..+|...|++++|+ ++|   .+|++|+.||.|++||+.+++
T Consensus       322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            24899999999966 677   999999999999999987654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-31  Score=250.11  Aligned_cols=248  Identities=20%  Similarity=0.367  Sum_probs=209.3

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC  176 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~  176 (500)
                      +...+.+|.+.|.+++|+|++++|++|+.|+.|++|++...   .++..+.+|...|.+++|  ++++|++++.|+.|++
T Consensus        51 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~  128 (313)
T 3odt_A           51 LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKV  128 (313)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred             EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEE
Confidence            34556789999999999999999999999999999998654   556778899999999999  6789999999999999


Q ss_pred             EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC-ccccEEEEEeCCCCeEE
Q 010816          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-HTLAVTCVKWGGDGVIY  255 (500)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~l~  255 (500)
                      ||  .++. ...+..|...+.++.|.|.    +...+++++.|+.|++||  ..+....+.. |...+.++.|++++.++
T Consensus       129 ~d--~~~~-~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~  199 (313)
T 3odt_A          129 WK--EGSL-VYNLQAHNASVWDAKVVSF----SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI  199 (313)
T ss_dssp             EE--TTEE-EEEEECCSSCEEEEEEEET----TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEE
T ss_pred             Ec--CCcE-EEecccCCCceeEEEEccC----CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEE
Confidence            99  3332 2346778999999999773    346899999999999999  4566666776 89999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  335 (500)
                      +++.|+.|++||+++++.+..                                                           
T Consensus       200 ~~~~dg~i~i~d~~~~~~~~~-----------------------------------------------------------  220 (313)
T 3odt_A          200 SCSNDGLIKLVDMHTGDVLRT-----------------------------------------------------------  220 (313)
T ss_dssp             EEETTSEEEEEETTTCCEEEE-----------------------------------------------------------
T ss_pred             EccCCCeEEEEECCchhhhhh-----------------------------------------------------------
Confidence            999999999999887654332                                                           


Q ss_pred             eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC  415 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  415 (500)
                                          +.+|...|.+++|+|++ .|++++.||.|++||+.+++.+..+..|..++.++       
T Consensus       221 --------------------~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~-------  272 (313)
T 3odt_A          221 --------------------YEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSV-------  272 (313)
T ss_dssp             --------------------EECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEE-------
T ss_pred             --------------------hhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEE-------
Confidence                                23466778999999999 58899999999999999999999999999888877       


Q ss_pred             ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc
Q 010816          416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD  466 (500)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~  466 (500)
                                          +|+|+++ +++++.||.|++||+++++....
T Consensus       273 --------------------~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          273 --------------------DCMSNGD-IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             --------------------EECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred             --------------------EEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence                                5689998 66799999999999998776543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8e-33  Score=264.37  Aligned_cols=244  Identities=14%  Similarity=0.162  Sum_probs=183.2

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEE-----------eCCCcEEEEeCCCCceeEE---------ecCCCCCEEEEEEcCCC
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASG-----------SGDTTVRLWDLNTQTPMFK---------CTGHKNWVLCIAWSADG  162 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~-----------~~d~~i~iwd~~~~~~~~~---------~~~h~~~v~~v~~s~~~  162 (500)
                      .|.+|.+.|.+++++  ++.+++|           +.|+++|+|++.+......         ...+...+.+++|+|||
T Consensus        68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg  145 (365)
T 4h5i_A           68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG  145 (365)
T ss_dssp             ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred             EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence            567899999888764  4556655           4577899998765432211         12345668888899988


Q ss_pred             CEEEEE--eCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc
Q 010816          163 KHLVSG--SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT  240 (500)
Q Consensus       163 ~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~  240 (500)
                      ++|++|  +.|++|++||++++                                                +++..+. |.
T Consensus       146 ~~la~as~~~d~~i~iwd~~~~------------------------------------------------~~~~~~~-~~  176 (365)
T 4h5i_A          146 TVAAIASSKVPAIMRIIDPSDL------------------------------------------------TEKFEIE-TR  176 (365)
T ss_dssp             SCEEEEESCSSCEEEEEETTTT------------------------------------------------EEEEEEE-CS
T ss_pred             CEEEEEECCCCCEEEEeECCCC------------------------------------------------cEEEEeC-CC
Confidence            877644  35677777776544                                                2233332 55


Q ss_pred             ccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEE--eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816          241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRE--LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (500)
Q Consensus       241 ~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (500)
                      ..|.+++|+|++.+++.+.++.+++|+..+++.+..  ...|...|.+++++|+                          
T Consensus       177 ~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd--------------------------  230 (365)
T 4h5i_A          177 GEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIAD--------------------------  230 (365)
T ss_dssp             SCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEET--------------------------
T ss_pred             CceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCC--------------------------
Confidence            678899999998655555566777888777766543  3567888999999876                          


Q ss_pred             HhhhhhcCCCCcEEEEeeCCC----eEEEEcCCCCCC---CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010816          319 ERYNKIKGNAPERLVSGSDDF----TMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~s~d~----~v~~wd~~~~~~---~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~  391 (500)
                                +..+++++.|+    .+++|+......   ....+.+|...|++++|+|||++||+|+.|++|+|||+.+
T Consensus       231 ----------g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~  300 (365)
T 4h5i_A          231 ----------DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD  300 (365)
T ss_dssp             ----------TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             ----------CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence                      34677777776    578888654322   1235678999999999999999999999999999999999


Q ss_pred             CceEEEE-eCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816          392 GKFVAVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       392 ~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                      ++++..+ ++|..+|+++                           +|||||++||+||.|++|||||+..
T Consensus       301 ~~~~~~~~~gH~~~V~~v---------------------------~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          301 LSMSKIFKQAHSFAITEV---------------------------TISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TEEEEEETTSSSSCEEEE---------------------------EECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CcEEEEecCcccCCEEEE---------------------------EECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9998875 7999999988                           5699999999999999999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.7e-32  Score=263.15  Aligned_cols=248  Identities=19%  Similarity=0.305  Sum_probs=199.4

Q ss_pred             CCCCceeEEecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCccccc-ccCcccceEEEEeeeeecCCCCceEE
Q 010816          137 LNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFV  214 (500)
Q Consensus       137 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~  214 (500)
                      +........+.+|...|.+++|+|++ ++|++|+.|+.|++||+.+++..... ..+|...|.++.|+|.    +...++
T Consensus        60 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~  135 (383)
T 3ei3_B           60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF----NTNQLF  135 (383)
T ss_dssp             HTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT----EEEEEE
T ss_pred             ccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC----CCCEEE
Confidence            33444556778999999999999999 99999999999999999987654322 2479999999999873    235799


Q ss_pred             EEeCCCcEEEEECCCCeEEEEecC---ccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEec
Q 010816          215 SASKDGDARIWDVSLRKCVICLSG---HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS  290 (500)
Q Consensus       215 s~s~dg~v~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~  290 (500)
                      +++.|+.|++||++. ..+..+..   |...|.+++|++++ .|++|+.|+.|++||++ ++.+                
T Consensus       136 s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~----------------  197 (383)
T 3ei3_B          136 VSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEI----------------  197 (383)
T ss_dssp             EEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEE----------------
T ss_pred             EEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEE----------------
Confidence            999999999999986 44444543   44789999998876 57888899999999873 3222                


Q ss_pred             CcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC
Q 010816          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (500)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp  370 (500)
                                                                                     ..+.+|...|.+++|+|
T Consensus       198 ---------------------------------------------------------------~~~~~h~~~v~~~~~~~  214 (383)
T 3ei3_B          198 ---------------------------------------------------------------FKEKLHKAKVTHAEFNP  214 (383)
T ss_dssp             ---------------------------------------------------------------EEEECSSSCEEEEEECS
T ss_pred             ---------------------------------------------------------------EEeccCCCcEEEEEECC
Confidence                                                                           12335777899999999


Q ss_pred             CCC-EEEEEeCCCcEEEEeCCC----CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC-CCCEE
Q 010816          371 DGQ-WVASASFDKSIKLWNGTT----GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLL  444 (500)
Q Consensus       371 ~g~-~lasgs~Dg~i~lwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l  444 (500)
                      +++ +|++|+.|+.|++||+.+    +.++..+ +|...+.++                           +|+| ++++|
T Consensus       215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~---------------------------~~s~~~~~~l  266 (383)
T 3ei3_B          215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAA---------------------------YFNPTDSTKL  266 (383)
T ss_dssp             SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEE---------------------------EECTTTSCEE
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEE---------------------------EEcCCCCCEE
Confidence            998 999999999999999987    5666666 688888777                           5699 99999


Q ss_pred             EEEECCCcEEEEECCCccccccccCcc-----------------cCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          445 LSGSKDSTLKVWDIRTQKLKQDLPGHA-----------------DEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       445 ~s~s~d~~v~iwd~~~~~~~~~~~~h~-----------------~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ++++.|+.|++||+++++....+.+|.                 ..+..++|+|||++  +++.|++|++|+
T Consensus       267 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd  336 (383)
T 3ei3_B          267 LTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYD  336 (383)
T ss_dssp             EEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEE
T ss_pred             EEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEe
Confidence            999999999999999887766665543                 34555777888777  888999999997

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=8.7e-33  Score=268.32  Aligned_cols=276  Identities=18%  Similarity=0.274  Sum_probs=221.6

Q ss_pred             EEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCc---ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816          154 LCIAWSADGKHL-VSGSKAGELQCWDPQTGKP---SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (500)
Q Consensus       154 ~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~  229 (500)
                      ..++++|+...+ ++++.||.|++|++.+...   ....+.+|...|.++.|+|.    +...+++|+.||.|++||+..
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~----~~~~l~s~s~dg~v~vw~~~~  113 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH----NDNVIASGSEDCTVMVWEIPD  113 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT----CTTEEEEEETTSEEEEEECCT
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC----CCCEEEEEeCCCeEEEEEccC
Confidence            357788876544 4578999999999865421   22346789999999999873    346899999999999999988


Q ss_pred             C-------eEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEe--ecCCceEEEEEecCcceeeec
Q 010816          230 R-------KCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIREL--KGHGHWVNSLALSTEYALRTG  298 (500)
Q Consensus       230 ~-------~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~  298 (500)
                      +       +++..+.+|...|.+++|++++  .|++++.|+.|++||+.+++.+..+  ..|...|.+++++++      
T Consensus       114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~------  187 (402)
T 2aq5_A          114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD------  187 (402)
T ss_dssp             TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT------
T ss_pred             CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC------
Confidence            7       5678889999999999999985  6899999999999999999999998  789999999999875      


Q ss_pred             cccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee-ecccCc-EEEEEECCCCCEEE
Q 010816          299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQL-VNHVYFSPDGQWVA  376 (500)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~-~~h~~~-v~~l~~sp~g~~la  376 (500)
                                                    +..+++++.|+.|++||+..... ...+ .+|... +.++.|+|++.+|+
T Consensus       188 ------------------------------~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~  236 (402)
T 2aq5_A          188 ------------------------------GALICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEGKILT  236 (402)
T ss_dssp             ------------------------------SSCEEEEETTSEEEEEETTTTEE-EEEEECSSCSSSCCEEEECSTTEEEE
T ss_pred             ------------------------------CCEEEEEecCCcEEEEeCCCCce-eeeeccCCCCCcceEEEEcCCCcEEE
Confidence                                          34689999999999999876443 3334 677765 89999999999999


Q ss_pred             EE---eCCCcEEEEeCCCCce-EEEEe-CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE-EECC
Q 010816          377 SA---SFDKSIKLWNGTTGKF-VAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS-GSKD  450 (500)
Q Consensus       377 sg---s~Dg~i~lwd~~~~~~-~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~s~d  450 (500)
                      +|   +.|+.|++||+.+++. +.... .|...+..+                           +|+|++++|++ |+.|
T Consensus       237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~~~g~~d  289 (402)
T 2aq5_A          237 TGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP---------------------------FFDPDTNIVYLCGKGD  289 (402)
T ss_dssp             EEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE---------------------------EEETTTTEEEEEETTC
T ss_pred             EeccCCCCceEEEEcCccccCCceEEeccCCCceeEE---------------------------EEcCCCCEEEEEEcCC
Confidence            99   7999999999988654 32222 344444443                           67999999975 5579


Q ss_pred             CcEEEEECCCccc-cccccC--cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          451 STLKVWDIRTQKL-KQDLPG--HADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       451 ~~v~iwd~~~~~~-~~~~~~--h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +.|++||+.+++. +..+..  |...|.+++|+|++..+++  .|+.+++|+
T Consensus       290 g~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~  339 (402)
T 2aq5_A          290 SSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK  339 (402)
T ss_dssp             SCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred             CeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence            9999999998774 444444  4588999999999988764  566899996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=5.1e-32  Score=246.56  Aligned_cols=283  Identities=16%  Similarity=0.162  Sum_probs=200.1

Q ss_pred             cEEEEEEcCCC-C--eEEEEeCCCcEEEEeCCCC---ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          110 AVLSVAFSPDG-R--QLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       110 ~V~~~~~sp~~-~--~lat~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      .+.++.|-..+ +  -+++++ ..+|++|+..+.   +.++.+.+|+.+|..+.|.||..-|++...           |.
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~  108 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-----------GN  108 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-----------CS
T ss_pred             EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-----------cc
Confidence            35555564433 2  344554 568999999988   788999999999999999998655544321           11


Q ss_pred             cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEe---CC
Q 010816          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS---QD  260 (500)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~---~d  260 (500)
                             -+...|.++.++|.+.. -...+++++.+  +++|++.                      ++.++..+   .|
T Consensus       109 -------~~~~~v~sla~spd~~~-~~~~l~s~g~~--~~v~~l~----------------------~g~lv~ss~~g~d  156 (356)
T 2w18_A          109 -------LEIREIRALFCSSDDES-EKQVLLKSGNI--KAVLGLT----------------------KRRLVSSSGTLSD  156 (356)
T ss_dssp             -------SSEEEEEEECC-------CCEEEEEEEEE--EEEEEET----------------------TTEEEEEESSSTT
T ss_pred             -------ccccceEEEEECCCccc-cccEEEeCCCe--EEEEecC----------------------CCcEEEecccCCC
Confidence                   13345677777663211 13456666633  6667653                      34444443   58


Q ss_pred             CeEEEEeC-CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816          261 CTIKVWET-TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (500)
Q Consensus       261 g~i~lwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~  339 (500)
                      +.|++|++ .+|+.+..+..|...+..+++++..                                 ..++.+++++.|+
T Consensus       157 ~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~---------------------------------g~~~~LaSgS~D~  203 (356)
T 2w18_A          157 QQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ---------------------------------GMQEALLGTTIMN  203 (356)
T ss_dssp             CEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE---------------------------------TSTTEEEEEETTS
T ss_pred             CcEEEEEECCCCceeeeeccCCCceeeEEeeccC---------------------------------CCCceEEEecCCC
Confidence            99999998 5588888888888888888877610                                 1246899999999


Q ss_pred             eEEEEcCCCCCCCceeeeccc---CcEEEEEECCCCCEE------------EEEeCCCcEEEEeCCCCceEEEE-----e
Q 010816          340 TMFLWEPAVSKQPKTRMTGHQ---QLVNHVYFSPDGQWV------------ASASFDKSIKLWNGTTGKFVAVF-----R  399 (500)
Q Consensus       340 ~v~~wd~~~~~~~~~~~~~h~---~~v~~l~~sp~g~~l------------asgs~Dg~i~lwd~~~~~~~~~~-----~  399 (500)
                      +|++||+...+ ....+.+|.   ..+.+++|+|+|.++            ++|+.|++|++||..+++++.++     .
T Consensus       204 TIkIWDl~TGk-~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~  282 (356)
T 2w18_A          204 NIVIWNLKTGQ-LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPP  282 (356)
T ss_dssp             EEEEEETTTCC-EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCT
T ss_pred             cEEEEECCCCc-EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccC
Confidence            99999987654 344455543   467788999999886            67889999999999999987765     2


Q ss_pred             CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEE-EEE
Q 010816          400 GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF-AVD  478 (500)
Q Consensus       400 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~-~l~  478 (500)
                      +|.+...+.                             +.++.++|+|+.|++|+|||+++++++.++.+|.+.+. .++
T Consensus       283 Gh~~~~lsg-----------------------------~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va  333 (356)
T 2w18_A          283 GQAGRFLEG-----------------------------DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK  333 (356)
T ss_dssp             TCCCCEEEE-----------------------------EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred             CCcceeEcc-----------------------------ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence            554432211                             23478999999999999999999999999999988766 589


Q ss_pred             EcCCCCEEEEEeCCCcEEEec
Q 010816          479 WSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       479 ~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |||||++|+||+.|++||||+
T Consensus       334 fSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          334 WSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             ECSSSSEEEEECTTSCEEEEE
T ss_pred             ECCCCCEEEEEECCCcEEEec
Confidence            999999999999999999997

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2e-32  Score=260.79  Aligned_cols=299  Identities=10%  Similarity=0.087  Sum_probs=210.5

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCC
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQT  181 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~  181 (500)
                      ++.+|.+.|.+++|+|||++||+|+.|+ ++|||+.+.........  ..+..+.+.++++.+ ++++.|++|++||..+
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            4578999999999999999999998775 78999987766544332  357888898888877 5678889999999998


Q ss_pred             CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-eEEEEecCccccEEEEEeCCCCeEEE--Ee
Q 010816          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYT--GS  258 (500)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~l~t--~~  258 (500)
                      ++.... + .+...|.++.|++.       .++. ..|+.|++||+.+. +.+..+..   +...+++++ ..++.  |+
T Consensus        91 ~~~~~~-~-~~~~~v~~v~~~~~-------~~~~-~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la~~sg~  156 (355)
T 3vu4_A           91 KQDVSR-I-KVDAPVKDLFLSRE-------FIVV-SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLVYSNEF  156 (355)
T ss_dssp             TEEEEE-E-ECSSCEEEEEECSS-------EEEE-EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEEEEESS
T ss_pred             CcEEEE-E-ECCCceEEEEEcCC-------EEEE-EEcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEEEeCCC
Confidence            876543 2 25668888888652       3343 35789999999887 55544433   333444555 55555  68


Q ss_pred             CCCeEEEEeCCCCe----------------eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816          259 QDCTIKVWETTQGK----------------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (500)
Q Consensus       259 ~dg~i~lwd~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (500)
                      .||.|++||+.+++                .+..+.+|...|.+++++|+                              
T Consensus       157 ~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~------------------------------  206 (355)
T 3vu4_A          157 NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK------------------------------  206 (355)
T ss_dssp             CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT------------------------------
T ss_pred             cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC------------------------------
Confidence            99999999998865                26778899999999999885                              


Q ss_pred             hhcCCCCcEEEEeeCCCe-EEEEcCCCCCCCceeee-c-ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE--EE
Q 010816          323 KIKGNAPERLVSGSDDFT-MFLWEPAVSKQPKTRMT-G-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV--AV  397 (500)
Q Consensus       323 ~~~~~~~~~~~s~s~d~~-v~~wd~~~~~~~~~~~~-~-h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~--~~  397 (500)
                            +..+++|+.|++ |++||+..... ...+. + |...|.+++|+|+|++|++++.|++|++||+..+...  ..
T Consensus       207 ------g~~l~s~s~d~~~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~  279 (355)
T 3vu4_A          207 ------SDMVATCSQDGTIIRVFKTEDGVL-VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHA  279 (355)
T ss_dssp             ------SSEEEEEETTCSEEEEEETTTCCE-EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEE
T ss_pred             ------CCEEEEEeCCCCEEEEEECCCCcE-EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccc
Confidence                  357999999998 99999876543 34455 5 9999999999999999999999999999999875321  11


Q ss_pred             EeCCcccEEEEEeeeeeeecCCCCceeeee-ccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc
Q 010816          398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVD-MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK  462 (500)
Q Consensus       398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~  462 (500)
                      +.++   +....+...+.+    ....... .......++|+++++++++++.||.+++|++..++
T Consensus       280 ~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          280 LKGW---INMKYFQSEWSL----CNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             TTTT---EECCCCCCSSCS----EEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             ccce---eeccccccccce----eEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            1111   000000000000    0000000 01112457899999999999999999999976543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=7.1e-31  Score=257.45  Aligned_cols=317  Identities=12%  Similarity=0.088  Sum_probs=242.4

Q ss_pred             ccEEEEE---EcCCCCeEEEE--------------eCCCcEEEEeC--CCC--ceeEEecCCCCCEEEEEEcCCCCEEEE
Q 010816          109 EAVLSVA---FSPDGRQLASG--------------SGDTTVRLWDL--NTQ--TPMFKCTGHKNWVLCIAWSADGKHLVS  167 (500)
Q Consensus       109 ~~V~~~~---~sp~~~~lat~--------------~~d~~i~iwd~--~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s  167 (500)
                      ..+..++   |+|+++.++..              +.++.++||.+  .++  ..+..+..+ ..+.+++|+|++.++++
T Consensus        61 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~  139 (433)
T 3bws_A           61 IALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIP  139 (433)
T ss_dssp             EEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEE
T ss_pred             CccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEE
Confidence            4456666   67766655433              33343355544  334  344445444 44669999998778888


Q ss_pred             EeCCCeEEEEeCCCCCcccc----cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccE
Q 010816          168 GSKAGELQCWDPQTGKPSGN----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV  243 (500)
Q Consensus       168 ~~~d~~i~~wd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v  243 (500)
                      ++.|+.|++||+.+++....    .+.+|...+.++.|.|     ++..+++++.|+.|++||+.+++.+..+..|...+
T Consensus       140 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~  214 (433)
T 3bws_A          140 LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-----HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWS  214 (433)
T ss_dssp             BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-----GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSE
T ss_pred             eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-----CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCe
Confidence            88899999999998875432    2457888999999865     34688999999999999999999998888999999


Q ss_pred             EEEEeCCCC-eE-EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816          244 TCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (500)
Q Consensus       244 ~~~~~~~~~-~l-~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (500)
                      .+++|++++ .+ ++++.|+.|++||+.+++.+..+..+. .+.+++++++.                            
T Consensus       215 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g----------------------------  265 (433)
T 3bws_A          215 KILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDG----------------------------  265 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTS----------------------------
T ss_pred             eEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCC----------------------------
Confidence            999999987 34 455589999999999998888776544 47778777652                            


Q ss_pred             hhhcCCCCcEEEEee--------CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCC
Q 010816          322 NKIKGNAPERLVSGS--------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTG  392 (500)
Q Consensus       322 ~~~~~~~~~~~~s~s--------~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~lasgs~Dg~i~lwd~~~~  392 (500)
                              ..+++++        .|+.|++||+....  ......|...+.+++|+|+++ ++++++.|+.|++||+.++
T Consensus       266 --------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          266 --------KELYIAQFSASNQESGGGRLGIYSMDKEK--LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             --------SEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             --------CEEEEEECCCCccccCCCeEEEEECCCCc--EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence                    3455555        58899999986543  222345566889999999997 4567789999999999999


Q ss_pred             ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC---------------CCcEEEEE
Q 010816          393 KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK---------------DSTLKVWD  457 (500)
Q Consensus       393 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~---------------d~~v~iwd  457 (500)
                      +.+..+. +...+..+                           +|+|+|++|++++.               ||.|++||
T Consensus       336 ~~~~~~~-~~~~~~~~---------------------------~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d  387 (433)
T 3bws_A          336 KVQKSIP-VFDKPNTI---------------------------ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVID  387 (433)
T ss_dssp             EEEEEEE-CSSSEEEE---------------------------EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred             cEEEEec-CCCCCCeE---------------------------EEcCCCCEEEEEecCCCccccccccccccceEEEEEE
Confidence            8877665 44444444                           67999998888876               57999999


Q ss_pred             CCCccccccccCcccCEEEEEEcCCCCEEEEEeC-CCcEEEec
Q 010816          458 IRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK-DRVLKLWM  499 (500)
Q Consensus       458 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~-D~~v~iW~  499 (500)
                      +.+++.+..+.++ ..+.+++|+|||++|++++. |++|++|+
T Consensus       388 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          388 TTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYR  429 (433)
T ss_dssp             TTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             CCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence            9999888877664 57899999999999998875 99999997

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.1e-31  Score=248.57  Aligned_cols=259  Identities=24%  Similarity=0.420  Sum_probs=208.5

Q ss_pred             cceEeEEecc--ccccc--ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCE
Q 010816           89 QAVFRIRPVN--RCSAT--IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH  164 (500)
Q Consensus        89 ~~~~~~~~~~--~~~~~--~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~  164 (500)
                      +...++|...  .+..+  +.+|...|.+++|+|++++||+|+.|++|+|||+++++++..+.+|...+.++.+  ++..
T Consensus        44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~  121 (318)
T 4ggc_A           44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI  121 (318)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTE
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCE
Confidence            4455666543  33343  4578899999999999999999999999999999999999999999999887766  5679


Q ss_pred             EEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE----EEEecCcc
Q 010816          165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC----VICLSGHT  240 (500)
Q Consensus       165 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~----~~~~~~h~  240 (500)
                      |++++.++.+++|+...+......+.+|...+..+.+.+     .+..+++++.|+.|++||+++++.    ......|.
T Consensus       122 l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  196 (318)
T 4ggc_A          122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ  196 (318)
T ss_dssp             EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC
T ss_pred             EEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-----CCCEEEEEecCcceeEEECCCCcccccceeeecccC
Confidence            999999999999999887666566788999998888765     446899999999999999987642    34456677


Q ss_pred             ccEEEEEeCCCC--e--EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816          241 LAVTCVKWGGDG--V--IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (500)
Q Consensus       241 ~~v~~~~~~~~~--~--l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (500)
                      ..|.++.+.+++  .  +++++.+++|++||...+....                                         
T Consensus       197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-----------------------------------------  235 (318)
T 4ggc_A          197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-----------------------------------------  235 (318)
T ss_dssp             SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-----------------------------------------
T ss_pred             CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-----------------------------------------
Confidence            788888887654  2  3456677778888765533221                                         


Q ss_pred             HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe--CCCcEEEEeCCCCce
Q 010816          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKF  394 (500)
Q Consensus       317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs--~Dg~i~lwd~~~~~~  394 (500)
                                                             ...+...+..+.|+|++..+++++  .|+.|++||+.++++
T Consensus       236 ---------------------------------------~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~  276 (318)
T 4ggc_A          236 ---------------------------------------AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK  276 (318)
T ss_dssp             ---------------------------------------EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred             ---------------------------------------cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE
Confidence                                                   122345578889999988877654  799999999999999


Q ss_pred             EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc
Q 010816          395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ  461 (500)
Q Consensus       395 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~  461 (500)
                      +..+++|.++|.++                           +|+|+|++|++|+.|++|+|||+...
T Consensus       277 ~~~l~gH~~~V~~l---------------------------~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          277 VAELKGHTSRVLSL---------------------------TMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEECCCSSCEEEE---------------------------EECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EEEEcCCCCCEEEE---------------------------EEcCCCCEEEEEecCCeEEEEECCCC
Confidence            99999999999988                           56999999999999999999998653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.1e-32  Score=266.68  Aligned_cols=251  Identities=20%  Similarity=0.366  Sum_probs=215.0

Q ss_pred             cccCCcccEEEEEEcCC-CCeEEEEeCCCcEEEEeCCC----------CceeEEecCCCCCEEEEEEcCCCC-EEEEEeC
Q 010816          103 TIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNT----------QTPMFKCTGHKNWVLCIAWSADGK-HLVSGSK  170 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~~----------~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~  170 (500)
                      ...+|.+.|++++|+|+ +.+||+++.||.|+|||+.+          ..++..+.+|...|.+++|+|++. +|++|+.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            34679999999999997 78999999999999999976          567788889999999999999988 9999999


Q ss_pred             CCeEEEEeCCCCCcc------cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC---eEEEEecCccc
Q 010816          171 AGELQCWDPQTGKPS------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTL  241 (500)
Q Consensus       171 d~~i~~wd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~---~~~~~~~~h~~  241 (500)
                      ||.|++||+.++...      ...+.+|...|.++.|+|..    ...|++++.|+.|++||++.+   +.+..+.+|..
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~----~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC----TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC----CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence            999999999874321      22456899999999998742    358999999999999999977   56777789999


Q ss_pred             cEEEEEeCCCC--eEEEEeCCCeEEEEeCCC-CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816          242 AVTCVKWGGDG--VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (500)
Q Consensus       242 ~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (500)
                      .|++++|++++  .+++|+.||.|++||+++ +..+..+..|...|.+++++|+.                         
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~-------------------------  333 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN-------------------------  333 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSC-------------------------
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCC-------------------------
Confidence            99999999876  588999999999999998 56688888899999999998752                         


Q ss_pred             HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC-------------CCceeeecccCcEEEEEECCCCC-EEEEEeCCCcE
Q 010816          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-------------QPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSI  384 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~-------------~~~~~~~~h~~~v~~l~~sp~g~-~lasgs~Dg~i  384 (500)
                                ...+++++.|+.|++||+....             .......+|...|++++|+|+++ +|++++.||.|
T Consensus       334 ----------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i  403 (430)
T 2xyi_A          334 ----------ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM  403 (430)
T ss_dssp             ----------TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             ----------CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCE
Confidence                      2468999999999999986522             23345568899999999999998 99999999999


Q ss_pred             EEEeCCCC
Q 010816          385 KLWNGTTG  392 (500)
Q Consensus       385 ~lwd~~~~  392 (500)
                      ++|++...
T Consensus       404 ~iw~~~~~  411 (430)
T 2xyi_A          404 QVWQMAEN  411 (430)
T ss_dssp             EEEEECHH
T ss_pred             EEeEcccc
Confidence            99998653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.4e-31  Score=246.94  Aligned_cols=218  Identities=22%  Similarity=0.345  Sum_probs=176.7

Q ss_pred             cccccccCCcccEEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCC--CCEEEEEeCCC
Q 010816           99 RCSATIAGHTEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAG  172 (500)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~--~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~  172 (500)
                      .+..++.||.++|.+++|+|+  +++||+|+.|++|+|||+.++.  .+..+.+|...|.+++|+|+  +.+|++|+.|+
T Consensus        44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~  123 (297)
T 2pm7_B           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG  123 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC
Confidence            456788999999999999864  8999999999999999998763  55677889999999999997  88999999999


Q ss_pred             eEEEEeCCCCCc-ccccccCcccceEEEEeeeeecC--------CCCceEEEEeCCCcEEEEECCCCe----EEEEecCc
Q 010816          173 ELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLN--------APCRRFVSASKDGDARIWDVSLRK----CVICLSGH  239 (500)
Q Consensus       173 ~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~s~s~dg~v~iwd~~~~~----~~~~~~~h  239 (500)
                      +|++||+.++.. ....+.+|...|.++.|+|....        .+...|++|+.|++|++||++.++    +...+.+|
T Consensus       124 ~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H  203 (297)
T 2pm7_B          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (297)
T ss_dssp             EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence            999999987642 23346789999999999985321        124589999999999999998765    56778999


Q ss_pred             cccEEEEEeCCC----CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHH
Q 010816          240 TLAVTCVKWGGD----GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (500)
Q Consensus       240 ~~~v~~~~~~~~----~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (500)
                      ...|.+++|+|+    .+|++++.|++|++||+.++....        .                               
T Consensus       204 ~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~--------~-------------------------------  244 (297)
T 2pm7_B          204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW--------K-------------------------------  244 (297)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC--------E-------------------------------
T ss_pred             CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc--------c-------------------------------
Confidence            999999999997    368899999999999975421000        0                               


Q ss_pred             HHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (500)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~  390 (500)
                                               ..+          ....+|...|.+++|+|+|++||+++.|+.|++|+..
T Consensus       245 -------------------------~~~----------~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          245 -------------------------KTL----------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             -------------------------EEE----------SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             -------------------------eee----------eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence                                     000          0012456789999999999999999999999999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.4e-32  Score=269.65  Aligned_cols=284  Identities=19%  Similarity=0.219  Sum_probs=203.8

Q ss_pred             eEEEEEEeecc-----------eEeEEecc----cccccccCCcccEEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCcee
Q 010816           80 KVLSIVYQPQA-----------VFRIRPVN----RCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPM  143 (500)
Q Consensus        80 ~~~~~~~~~~~-----------~~~~~~~~----~~~~~~~gh~~~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~~~~~  143 (500)
                      .|..+.|.|..           ..++|...    .+...+.||.+.|++|+|+| ++++|++|+.|++|+|||++++...
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~  200 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR  200 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence            36677777632           23444332    22345679999999999998 6899999999999999999876543


Q ss_pred             EEec--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc
Q 010816          144 FKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD  221 (500)
Q Consensus       144 ~~~~--~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~  221 (500)
                      ....  .+...+.+++|+|++++|++|+.||.|++||++... . ..+.+|...|.++.|+|..    ...+++|+.|+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~-~~~~~h~~~v~~v~~~p~~----~~~~~s~s~d~~  274 (435)
T 4e54_B          201 VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-L-WNLRMHKKKVTHVALNPCC----DWFLATASVDQT  274 (435)
T ss_dssp             EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-C-CCSBCCSSCEEEEEECTTC----SSEEEEEETTSB
T ss_pred             EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-e-EEEecccceEEeeeecCCC----ceEEEEecCcce
Confidence            3333  344568899999999999999999999999986533 2 3578899999999998743    247889999999


Q ss_pred             EEEEECCCCeEEE---EecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCce------EEEEEecC
Q 010816          222 ARIWDVSLRKCVI---CLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW------VNSLALST  291 (500)
Q Consensus       222 v~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~------v~~~~~~~  291 (500)
                      |++||++..+...   ...+|...|++++|++++ .|++++.|+.|++||+.++.....+..|...      .....+++
T Consensus       275 v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (435)
T 4e54_B          275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP  354 (435)
T ss_dssp             CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS
T ss_pred             eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC
Confidence            9999998765433   335799999999999987 6899999999999999998877766555321      11222333


Q ss_pred             cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEE-EECC
Q 010816          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV-YFSP  370 (500)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l-~~sp  370 (500)
                      .......+...                        .....++++..++.|++||............+|...|.++ +|+|
T Consensus       355 ~~~~~~~~~~~------------------------d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp  410 (435)
T 4e54_B          355 RYNLIVVGRYP------------------------DPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP  410 (435)
T ss_dssp             SSSCEEEECCC------------------------CTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT
T ss_pred             CCCEEEEEEcC------------------------CCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC
Confidence            22111111000                        0011233344567899999876554434445788888887 6999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCce
Q 010816          371 DGQWVASASFDKSIKLWNGTTGKF  394 (500)
Q Consensus       371 ~g~~lasgs~Dg~i~lwd~~~~~~  394 (500)
                      +|++||+|+ |+.|+|||+++|+.
T Consensus       411 dg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          411 MGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             TSSCEEEEC-SSEEEECCCC----
T ss_pred             CCCEEEEEc-CCcEEEEECCcCee
Confidence            999999876 88999999998864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=7e-30  Score=246.85  Aligned_cols=304  Identities=13%  Similarity=0.137  Sum_probs=232.7

Q ss_pred             CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCcccccccCcccceEEE
Q 010816          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI  199 (500)
Q Consensus       121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~  199 (500)
                      .++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.... +..+. .+.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~-~~~~~-~v~~~   79 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-VPAGS-SPQGV   79 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-EECSS-SEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-EECCC-Cccce
Confidence            357888999999999999998888877665 48999999999977 6777999999999998876543 33333 78899


Q ss_pred             EeeeeecCCCCceE-EEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-EEEeCCCeEEEEeCCCCeeEEE
Q 010816          200 SWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDCTIKVWETTQGKLIRE  276 (500)
Q Consensus       200 ~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~t~~~dg~i~lwd~~~~~~~~~  276 (500)
                      .|+|     +++++ ++++.++.|++||+.+++.+..+..|. .+.+++|++++. + ++++.|+.|++||+.+++.+..
T Consensus        80 ~~sp-----dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           80 AVSP-----DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             EECT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EECC-----CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            9877     33445 566678999999999999888776554 678999999874 4 6788899999999999998888


Q ss_pred             eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee
Q 010816          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM  356 (500)
Q Consensus       277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~  356 (500)
                      +..+. .+..++++++.                                   ...+++++.|+.|++||+....  ....
T Consensus       154 ~~~~~-~~~~~~~~~dg-----------------------------------~~l~~~~~~~~~v~~~d~~~~~--~~~~  195 (391)
T 1l0q_A          154 VSVGR-SPKGIAVTPDG-----------------------------------TKVYVANFDSMSISVIDTVTNS--VIDT  195 (391)
T ss_dssp             EECCS-SEEEEEECTTS-----------------------------------SEEEEEETTTTEEEEEETTTTE--EEEE
T ss_pred             EecCC-CcceEEECCCC-----------------------------------CEEEEEeCCCCEEEEEECCCCe--EEEE
Confidence            77654 34777776642                                   1234678889999999986542  2223


Q ss_pred             ecccCcEEEEEECCCCCEEEEEe---CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccce
Q 010816          357 TGHQQLVNHVYFSPDGQWVASAS---FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS  433 (500)
Q Consensus       357 ~~h~~~v~~l~~sp~g~~lasgs---~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (500)
                      ..+...+.+++|+|+|++|++++   .|+.|++||+.+++.+..+..|.. +..+                         
T Consensus       196 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~-------------------------  249 (391)
T 1l0q_A          196 VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGI-------------------------  249 (391)
T ss_dssp             EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEE-------------------------
T ss_pred             EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEE-------------------------
Confidence            34566899999999999998888   689999999999998888777653 3333                         


Q ss_pred             eeEEcCCCCEE-EEEECCCcEEEEECCCccccccccCcccCEE---EEE------------EcCCC----------CEEE
Q 010816          434 LYSWSADSRLL-LSGSKDSTLKVWDIRTQKLKQDLPGHADEVF---AVD------------WSPDG----------EKVA  487 (500)
Q Consensus       434 ~~~~s~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~---~l~------------~s~dg----------~~l~  487 (500)
                        +|+|+|++| ++++.|+.|++||+.+++....+..|.....   .+.            |+.+.          ..+.
T Consensus       250 --~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~  327 (391)
T 1l0q_A          250 --AVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFT  327 (391)
T ss_dssp             --EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEE
T ss_pred             --EEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEE
Confidence              679999877 5678899999999999888777666544321   012            22211          3466


Q ss_pred             EEeCCCcEEEec
Q 010816          488 SGGKDRVLKLWM  499 (500)
Q Consensus       488 s~~~D~~v~iW~  499 (500)
                      ..+.|.++++|+
T Consensus       328 ~~~~~~~~~~W~  339 (391)
T 1l0q_A          328 DLSKDATEWKWD  339 (391)
T ss_dssp             ECCBSCSEEEEE
T ss_pred             eCCCCceEEEEE
Confidence            777899999997

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.3e-30  Score=252.85  Aligned_cols=230  Identities=32%  Similarity=0.596  Sum_probs=205.8

Q ss_pred             CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCC
Q 010816          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ  270 (500)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~  270 (500)
                      +|...|.++.+       ++..+++|+.||.|++||+.+++++..+.+|...|.++.|. +..+++|+.||+|++||+.+
T Consensus       131 ~~~~~v~~~~~-------d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          131 ETSKGVYCLQY-------DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SSCCCEEEEEC-------CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC-SSEEEEEETTSCEEEEESSS
T ss_pred             CCCCcEEEEEE-------CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC-CCEEEEEcCCCeEEEEECCC
Confidence            45566777765       34689999999999999999999999999999999999994 45899999999999999999


Q ss_pred             CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC
Q 010816          271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (500)
Q Consensus       271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~  350 (500)
                      ++.+..+..|...|.++++++                                      ..+++|+.|+.|++||+....
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~--------------------------------------~~l~s~s~dg~i~vwd~~~~~  244 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNN--------------------------------------GMMVTCSKDRSIAVWDMASPT  244 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCT--------------------------------------TEEEEEETTSCEEEEECSSSS
T ss_pred             CcEEEEEcCCCCcEEEEEEcC--------------------------------------CEEEEeeCCCcEEEEeCCCCC
Confidence            999999999999999988753                                      368999999999999987654


Q ss_pred             CCc--eeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeec
Q 010816          351 QPK--TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM  428 (500)
Q Consensus       351 ~~~--~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  428 (500)
                      ...  ..+.+|...|.+++|  ++++|++|+.||.|++||+.+++.+..+.+|...+.++.                   
T Consensus       245 ~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~-------------------  303 (435)
T 1p22_A          245 DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ-------------------  303 (435)
T ss_dssp             CCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-------------------
T ss_pred             CceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEE-------------------
Confidence            432  567789999999999  789999999999999999999999999999999988773                   


Q ss_pred             cccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          429 SCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       429 ~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                              +  ++.++++|+.||.|++||+++++.+..+.+|...|.+++|  ++++|++|+.||+|++|+
T Consensus       304 --------~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd  362 (435)
T 1p22_A          304 --------Y--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD  362 (435)
T ss_dssp             --------E--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred             --------e--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEE
Confidence                    2  5789999999999999999999999999999999999999  788999999999999997

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.98  E-value=7.4e-31  Score=248.77  Aligned_cols=248  Identities=12%  Similarity=0.054  Sum_probs=199.4

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc--ccccccCcccceEEEEeeeeecCCCCc-eEEEEeCCCcEE
Q 010816          147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDAR  223 (500)
Q Consensus       147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~s~s~dg~v~  223 (500)
                      .+|.+.|.+++|+|++++|++++.|+.|++||+.+++.  ......+|...|.++.|.|     ++. .+++|+.||.|+
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-----NTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-----SSSEEEEEEETTSCEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-----CCCcEEEEEcCCCeEE
Confidence            47999999999999999999999999999999987761  1123458899999999987     356 799999999999


Q ss_pred             EEEC-CCCeEEEEecC--ccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccc
Q 010816          224 IWDV-SLRKCVICLSG--HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (500)
Q Consensus       224 iwd~-~~~~~~~~~~~--h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (500)
                      +||+ ..++. ..+.+  |...|.++.|++...+++++.|+.|++||+++...        ..+                
T Consensus        83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~----------------  137 (342)
T 1yfq_A           83 KVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD--------GVI----------------  137 (342)
T ss_dssp             EECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT--------BCE----------------
T ss_pred             EEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc--------ccc----------------
Confidence            9999 77755 66778  99999999999866899999999999999753100        000                


Q ss_pred             cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC
Q 010816          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF  380 (500)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~  380 (500)
                                                     .         ...      .+...+ .|...|.+++|+|++  +++++.
T Consensus       138 -------------------------------~---------~~~------~~~~~~-~~~~~v~~~~~~~~~--l~~~~~  168 (342)
T 1yfq_A          138 -------------------------------A---------VKN------LNSNNT-KVKNKIFTMDTNSSR--LIVGMN  168 (342)
T ss_dssp             -------------------------------E---------EEE------SCSSSS-SSCCCEEEEEECSSE--EEEEES
T ss_pred             -------------------------------c---------ccC------CeeeEE-eeCCceEEEEecCCc--EEEEeC
Confidence                                           0         000      001111 266789999999988  999999


Q ss_pred             CCcEEEEeCCC-Cce--EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC-CCCEEEEEECCCcEEEE
Q 010816          381 DKSIKLWNGTT-GKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVW  456 (500)
Q Consensus       381 Dg~i~lwd~~~-~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iw  456 (500)
                      |+.|++||+.+ +..  ......|...+.++                           +|+| +++++++++.||.|++|
T Consensus       169 d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i---------------------------~~~~~~~~~l~~~~~dg~i~i~  221 (342)
T 1yfq_A          169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDV---------------------------ALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             TTEEEEEESSCCTTCCCEEEECSCSSCEEEE---------------------------EECSGGGCEEEEEETTSEEEEE
T ss_pred             CCeEEEEECCccccccceeeecCCCCceeEE---------------------------EECCCCCCEEEEEecCCcEEEE
Confidence            99999999988 543  33444566666665                           6799 99999999999999999


Q ss_pred             ECCCc------cccccccCccc---------CEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          457 DIRTQ------KLKQDLPGHAD---------EVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       457 d~~~~------~~~~~~~~h~~---------~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      ++...      +....+.+|..         .|.+++|+|++++|++++.||.|++|+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence            99876      66677777755         9999999999999999999999999973

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=3.3e-31  Score=255.98  Aligned_cols=262  Identities=17%  Similarity=0.147  Sum_probs=178.3

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-----EEecCCCCCEEEEEEcC--------CCCEEEEEe
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-----FKCTGHKNWVLCIAWSA--------DGKHLVSGS  169 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-----~~~~~h~~~v~~v~~s~--------~~~~l~s~~  169 (500)
                      ...+|...+....+++++.+||+|+.|++|+|||..++...     ..+.+|.+.|.+|+|+|        |+++||||+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s  163 (393)
T 4gq1_A           84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG  163 (393)
T ss_dssp             ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred             cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence            34556667777777888899999999999999999877543     23579999999999997        789999999


Q ss_pred             CCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE--------------
Q 010816          170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC--------------  235 (500)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~--------------  235 (500)
                      .|++|++||+.++.... .+.+|...+.+++|+|..    ..++++|+.|++|++||+++++....              
T Consensus       164 ~D~tv~~Wd~~~~~~~~-~~~~~~~~v~~v~~~p~~----~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s  238 (393)
T 4gq1_A          164 DDCTLIIWRLTDEGPIL-AGYPLSSPGISVQFRPSN----PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT  238 (393)
T ss_dssp             TTSEEEEEEEETTEEEE-EEEECSSCEEEEEEETTE----EEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred             CCCeEEEEECCCCceee-eecCCCCCcEEEEECCCC----CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence            99999999998776543 345678889999999843    24799999999999999987754322              


Q ss_pred             -----------ecCccccEEEEEeC-CCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816          236 -----------LSGHTLAVTCVKWG-GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (500)
Q Consensus       236 -----------~~~h~~~v~~~~~~-~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (500)
                                 ..+|...+.++.|. +++ .|++++.|+++++||+..++....+..+...+..+.+.++.         
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~---------  309 (393)
T 4gq1_A          239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV---------  309 (393)
T ss_dssp             EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSE---------
T ss_pred             cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc---------
Confidence                       23567778888886 554 68899999999999998877666555544433333322211         


Q ss_pred             CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC--CCCEEEEEeC
Q 010816          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASASF  380 (500)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp--~g~~lasgs~  380 (500)
                                                                         .....+...+ ...|+|  ++.++++|+.
T Consensus       310 ---------------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~sgs~  337 (393)
T 4gq1_A          310 ---------------------------------------------------QGISLFPSLL-GACPHPRYMDYFATAHSQ  337 (393)
T ss_dssp             ---------------------------------------------------EEECSSCCSS-CCEECSSCTTEEEEEETT
T ss_pred             ---------------------------------------------------ccccccCcce-eEEEccCCCCEEEEEECC
Confidence                                                               0011111112 223443  4567788999


Q ss_pred             CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       381 Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                      ||.|++||..+++.+..+.+|..+|.++                           +|+|||++||+++.|| +.+|.+
T Consensus       338 Dg~V~lwd~~~~~~~~~~~~~~~~V~sv---------------------------afspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          338 HGLIQLINTYEKDSNSIPIQLGMPIVDF---------------------------CWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             TTEEEEEETTCTTCCEEEEECSSCEEEE---------------------------EECTTSSEEEEEESSE-EEEEEE
T ss_pred             CCEEEEEECCCCcEEEEecCCCCcEEEE---------------------------EEcCCCCEEEEEeCCC-eEEEEE
Confidence            9999999999999988888898898887                           6799999999999776 666654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-30  Score=245.66  Aligned_cols=225  Identities=12%  Similarity=0.075  Sum_probs=178.9

Q ss_pred             CCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCC---------CCeeEEEee-
Q 010816          209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT---------QGKLIRELK-  278 (500)
Q Consensus       209 ~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~---------~~~~~~~~~-  278 (500)
                      +...+++|+.||.|++||+.+++.+..+.  ...|.++.|+++  +++++.|++|++|+..         +++.++.+. 
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~  122 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV  122 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence            34579999999999999999998877665  456777778877  9999999999999765         444444443 


Q ss_pred             cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec
Q 010816          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG  358 (500)
Q Consensus       279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~  358 (500)
                      .|...|.+++++|..                                  .+..+++++.|++|++||+............
T Consensus       123 ~~~~~v~~~~~~~~~----------------------------------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~  168 (343)
T 3lrv_A          123 DSANEIIYMYGHNEV----------------------------------NTEYFIWADNRGTIGFQSYEDDSQYIVHSAK  168 (343)
T ss_dssp             CCSSCEEEEECCC-------------------------------------CCEEEEEETTCCEEEEESSSSCEEEEECCC
T ss_pred             CCCCCEEEEEcCCCC----------------------------------CCCEEEEEeCCCcEEEEECCCCcEEEEEecC
Confidence            555678888877610                                  1457999999999999998765442222234


Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE-EEEeC-CcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816          359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-AVFRG-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS  436 (500)
Q Consensus       359 h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~-~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (500)
                      |...+.+++|+|+|.+||+|+.||.|++||+++++.+ ..+.+ |.++|.++                           +
T Consensus       169 ~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l---------------------------~  221 (343)
T 3lrv_A          169 SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV---------------------------K  221 (343)
T ss_dssp             SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEE---------------------------E
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEE---------------------------E
Confidence            5667999999999999999999999999999999987 88888 99999888                           5


Q ss_pred             EcCCCCEEEEEECCCcEEEEECCCccccccccC---cccCEE--EEEEcCCCCEEEEEeC-CCcEEEec
Q 010816          437 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG---HADEVF--AVDWSPDGEKVASGGK-DRVLKLWM  499 (500)
Q Consensus       437 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~---h~~~V~--~l~~s~dg~~l~s~~~-D~~v~iW~  499 (500)
                      |+|+|.+|++++ |+.|++||+++++....+..   |...+.  +++|+|+|++|++++. |+.|++|+
T Consensus       222 fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~  289 (343)
T 3lrv_A          222 FADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYK  289 (343)
T ss_dssp             ECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence            699999999999 55999999999877655543   433443  5999999999999998 99999995

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=8.2e-29  Score=242.76  Aligned_cols=278  Identities=15%  Similarity=0.135  Sum_probs=221.1

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE-----EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      ..+.+++|+|++.++++++.|+.|++||+.+++...     .+.+|...|.+++|++++.++++++.|+.|++||+.+++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            345589999977888888889999999999888765     345889999999999999999999999999999998876


Q ss_pred             cccccccCcccceEEEEeeeeecCCCCceE-EEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe---
Q 010816          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS---  258 (500)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~---  258 (500)
                      ... .+..|...+.++.|+|.     +..+ ++++.|+.|++||+++++.+..+..+ ..+.+++|++++ .+++++   
T Consensus       203 ~~~-~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~  275 (433)
T 3bws_A          203 YKA-TVDLTGKWSKILLYDPI-----RDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSA  275 (433)
T ss_dssp             EEE-EEECSSSSEEEEEEETT-----TTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEES
T ss_pred             EEE-EEcCCCCCeeEEEEcCC-----CCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCC
Confidence            543 34577888999999873     3445 56668999999999999988877665 458999999987 577776   


Q ss_pred             -----CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816          259 -----QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (500)
Q Consensus       259 -----~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (500)
                           .|+.|++||+.+++.+..+. +...+..++++++.                                   ...++
T Consensus       276 ~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g-----------------------------------~~l~~  319 (433)
T 3bws_A          276 SNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTE-----------------------------------NKIYV  319 (433)
T ss_dssp             CTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSST-----------------------------------TEEEE
T ss_pred             CccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCC-----------------------------------CEEEE
Confidence                 48899999999988776553 33456677776642                                   23467


Q ss_pred             EeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC---------------CCcEEEEeCCCCceEEEE
Q 010816          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---------------DKSIKLWNGTTGKFVAVF  398 (500)
Q Consensus       334 s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~---------------Dg~i~lwd~~~~~~~~~~  398 (500)
                      +++.|+.|++||..... .... ..+...+.+++|+|+|++|++++.               ||.|++||..+++.+..+
T Consensus       320 ~~~~~~~v~v~d~~~~~-~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          320 SDMCCSKIEVYDLKEKK-VQKS-IPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             EETTTTEEEEEETTTTE-EEEE-EECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             EecCCCEEEEEECCCCc-EEEE-ecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence            77899999999986432 2222 346778999999999999988876               579999999999988877


Q ss_pred             eCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEEEECC
Q 010816          399 RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIR  459 (500)
Q Consensus       399 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~  459 (500)
                      ..+. .+..+                           +|+|+|++|++++. |+.|++|++.
T Consensus       398 ~~~~-~~~~~---------------------------~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          398 EAGN-QPTGL---------------------------DVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             ECSS-SEEEE---------------------------EECTTSCEEEEEETTTTEEEEEEET
T ss_pred             cCCC-CCceE---------------------------EEcCCCCEEEEEECCCCeEEEEEec
Confidence            7643 34444                           67999999998875 9999999975

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.3e-29  Score=238.55  Aligned_cols=262  Identities=18%  Similarity=0.225  Sum_probs=187.4

Q ss_pred             ccccccCCcccEEEEEEcC--CCCeEEEEeCCCcEEEEeCCCC---------ceeEEecCCCCCEEEEEEcCC--CCEEE
Q 010816          100 CSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQ---------TPMFKCTGHKNWVLCIAWSAD--GKHLV  166 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp--~~~~lat~~~d~~i~iwd~~~~---------~~~~~~~~h~~~v~~v~~s~~--~~~l~  166 (500)
                      +...+.+|.+.|.+++|+|  ++++|++|+.|++|++||+.++         .++..+.+|...|.+++|+|+  +++|+
T Consensus        49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  128 (351)
T 3f3f_A           49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA  128 (351)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE
Confidence            4456689999999999999  6999999999999999999876         456778899999999999999  99999


Q ss_pred             EEeCCCeEEEEeCCCCCccccc------------ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE--
Q 010816          167 SGSKAGELQCWDPQTGKPSGNP------------LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC--  232 (500)
Q Consensus       167 s~~~d~~i~~wd~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~--  232 (500)
                      +++.|+.|++||+.+++.....            ..+|...+.++.|.|...  ....+++++.|+.+.+|+...++.  
T Consensus       129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~  206 (351)
T 3f3f_A          129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRF--SPEKLAVSALEQAIIYQRGKDGKLHV  206 (351)
T ss_dssp             EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSS--SCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred             EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCC--CCcEEEEecCCCcEEEEccCCCceee
Confidence            9999999999999887654321            136778899999988532  246899999999998888877764  


Q ss_pred             EEEecCccccEEEEEeCCCC-----eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCC
Q 010816          233 VICLSGHTLAVTCVKWGGDG-----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY  307 (500)
Q Consensus       233 ~~~~~~h~~~v~~~~~~~~~-----~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  307 (500)
                      +..+.+|...|++++|++++     .|++|+.||.|++||++.+...................+....            
T Consensus       207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  274 (351)
T 3f3f_A          207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDM------------  274 (351)
T ss_dssp             EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred             eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccc------------
Confidence            67788999999999999985     7999999999999998765433222111111111110000000            


Q ss_pred             CCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEE
Q 010816          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (500)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lw  387 (500)
                                          .......+.....+.+|+... ......+.+|...|++++|+|++++|++|+.||.|++|
T Consensus       275 --------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw  333 (351)
T 3f3f_A          275 --------------------DAQGRSDSNTEEKAELQSNLQ-VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW  333 (351)
T ss_dssp             ------------------------------------CCSEE-EEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             --------------------ccccccccccceeeeeccccc-ccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence                                000011222333344444221 12344567899999999999999999999999999999


Q ss_pred             eCCCCceEE
Q 010816          388 NGTTGKFVA  396 (500)
Q Consensus       388 d~~~~~~~~  396 (500)
                      |+.+++.+.
T Consensus       334 ~~~~~~~~~  342 (351)
T 3f3f_A          334 KATYSNEFK  342 (351)
T ss_dssp             EECTTSCEE
T ss_pred             ecCcCcchh
Confidence            999876544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.9e-29  Score=227.00  Aligned_cols=259  Identities=16%  Similarity=0.117  Sum_probs=182.8

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCC----CCEEEEEeCCCeEE
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD----GKHLVSGSKAGELQ  175 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~----~~~l~s~~~d~~i~  175 (500)
                      +..+..+|..+|..+.+.||...|+...                 .-.-+.+.|.+++|+||    +..+++++.+  ++
T Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------------~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~  138 (356)
T 2w18_A           78 KLYTWHFAEVPVLQIVPVPDVYNLVCVA-----------------LGNLEIREIRALFCSSDDESEKQVLLKSGNI--KA  138 (356)
T ss_dssp             EEEEEECCSSCEEEECCCTTCCSCEEEE-----------------ECSSSEEEEEEECC------CCEEEEEEEEE--EE
T ss_pred             eeEEEeccCceeEEEEEcCcccceeeee-----------------eccccccceEEEEECCCccccccEEEeCCCe--EE
Confidence            4677889999999999999865443321                 01124567999999999    9999998844  77


Q ss_pred             EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEe---CCCcEEEEECC-CCeEEEEecCccccEEEEEeCC-
Q 010816          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVS-LRKCVICLSGHTLAVTCVKWGG-  250 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s---~dg~v~iwd~~-~~~~~~~~~~h~~~v~~~~~~~-  250 (500)
                      +|++.++                             +++..+   .|+.|++|++. .++.+..+.+|...++.++|++ 
T Consensus       139 v~~l~~g-----------------------------~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~  189 (356)
T 2w18_A          139 VLGLTKR-----------------------------RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV  189 (356)
T ss_dssp             EEEETTT-----------------------------EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred             EEecCCC-----------------------------cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence            8876433                             233333   59999999994 5888888888988888888876 


Q ss_pred             --CC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCc---eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816          251 --DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGH---WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (500)
Q Consensus       251 --~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (500)
                        ++ .|++|+.|++|++||+.+|+.++++.+|..   .+.+++++|+..+........                     
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~---------------------  248 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPC---------------------  248 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------------------
T ss_pred             CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCC---------------------
Confidence              33 688999999999999999999999986543   466668888764432211100                     


Q ss_pred             cCCCCcEEEEeeCCCeEEEEcCCCCCCCcee----eecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTR----MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (500)
Q Consensus       325 ~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~----~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~  400 (500)
                         ....+++|+.|+++++||+.........    ..+|...+.+..++  +.++|+|+.|++|+|||+.+|+++.++++
T Consensus       249 ---~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~g  323 (356)
T 2w18_A          249 ---AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPP  323 (356)
T ss_dssp             ------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             ---CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence               0114689999999999998654322111    13665555444443  78999999999999999999999999999


Q ss_pred             CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       401 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                      |...+..                          .++|+|||++|++|+.|++|||||+
T Consensus       324 H~~~vvs--------------------------~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          324 VSDQHWS--------------------------FVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             C--CCCC--------------------------EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCeEE--------------------------EEEECCCCCEEEEEECCCcEEEecC
Confidence            9765432                          1268999999999999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=2.5e-28  Score=233.46  Aligned_cols=251  Identities=18%  Similarity=0.289  Sum_probs=191.7

Q ss_pred             EeCCCCceeEEecCCCCCEEEEEEcCC---CCEEEEEeCCCeEEEEeCCC-CCcccccccCcccceEEEEeeeeecCCCC
Q 010816          135 WDLNTQTPMFKCTGHKNWVLCIAWSAD---GKHLVSGSKAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPC  210 (500)
Q Consensus       135 wd~~~~~~~~~~~~h~~~v~~v~~s~~---~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  210 (500)
                      |+......+..+.+|.+.|.+++|+|+   |++|++|+.||.|++||+.+ +......+.+|...|.++.|+|     ++
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~   98 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-----DG   98 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-----TS
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-----CC
Confidence            444555666677899999999999999   69999999999999999987 5544456788999999999987     45


Q ss_pred             ceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEe--CCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEE
Q 010816          211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL  287 (500)
Q Consensus       211 ~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~  287 (500)
                      ..+++++.||.|++||+++++++. +.+|...|.++.|  ++++ .|++++.|+.|++||+++++.+..+..+.      
T Consensus        99 ~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------  171 (368)
T 3mmy_A           99 SKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE------  171 (368)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS------
T ss_pred             CEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC------
Confidence            689999999999999999988776 5679999999999  7776 58899999999999998876554433221      


Q ss_pred             EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEE
Q 010816          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY  367 (500)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~  367 (500)
                                                                                                .+.++.
T Consensus       172 --------------------------------------------------------------------------~~~~~~  177 (368)
T 3mmy_A          172 --------------------------------------------------------------------------RCYCAD  177 (368)
T ss_dssp             --------------------------------------------------------------------------CEEEEE
T ss_pred             --------------------------------------------------------------------------CceEEE
Confidence                                                                                      123333


Q ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCceEEEE-e-CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC---
Q 010816          368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVF-R-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR---  442 (500)
Q Consensus       368 ~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~-~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---  442 (500)
                      +.  +..+++++.|+.+++|++......... . .+......+                           ++.++..   
T Consensus       178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~  228 (368)
T 3mmy_A          178 VI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCV---------------------------AIFKDKQNKP  228 (368)
T ss_dssp             EE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEE---------------------------EEEECTTSCE
T ss_pred             ec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceE---------------------------EEcccCCCCC
Confidence            33  346777788888888888765432211 1 112222222                           1222222   


Q ss_pred             -EEEEEECCCcEEEEECCCc---cccccccCccc------------CEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          443 -LLLSGSKDSTLKVWDIRTQ---KLKQDLPGHAD------------EVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       443 -~l~s~s~d~~v~iwd~~~~---~~~~~~~~h~~------------~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                       .+++++.|+.|++||++..   +....+.+|..            .|.+++|+|++++|++++.||.|++|+.
T Consensus       229 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          229 TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK  302 (368)
T ss_dssp             EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence             3999999999999999887   44566677765            7999999999999999999999999973

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=6.9e-27  Score=225.82  Aligned_cols=328  Identities=18%  Similarity=0.205  Sum_probs=230.6

Q ss_pred             ccccCCcccEEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeC
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDP  179 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~l-at~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~  179 (500)
                      ..+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|+ +++.|+.|++||+
T Consensus        26 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~  103 (391)
T 1l0q_A           26 ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (391)
T ss_dssp             EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEEC
Confidence            3445554 48999999999987 677799999999999998887776555 899999999999875 4556799999999


Q ss_pred             CCCCcccccccCcccceEEEEeeeeecCCCCceE-EEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eE-EE
Q 010816          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI-YT  256 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l-~t  256 (500)
                      .+++.... +. +...+.++.|+|     +++.+ ++++.|+.|++||+.+++.+..+..|. .+.++.|++++ .+ ++
T Consensus       104 ~~~~~~~~-~~-~~~~~~~~~~s~-----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~  175 (391)
T 1l0q_A          104 TSNTVAGT-VK-TGKSPLGLALSP-----DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVA  175 (391)
T ss_dssp             TTTEEEEE-EE-CSSSEEEEEECT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEE
T ss_pred             CCCeEEEE-Ee-CCCCcceEEECC-----CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEE
Confidence            98865432 22 334578888876     33445 788889999999999999888877664 45899999987 34 57


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                      ++.|+.|++||+++++....+.. ...+.+++++++                                    +..+++++
T Consensus       176 ~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~------------------------------------g~~l~~~~  218 (391)
T 1l0q_A          176 NFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPE------------------------------------GTKAYVTN  218 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTT------------------------------------SSEEEEEE
T ss_pred             eCCCCEEEEEECCCCeEEEEEec-CCCccceEECCC------------------------------------CCEEEEEe
Confidence            78899999999999988777654 446777777764                                    24566665


Q ss_pred             ---CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeee
Q 010816          337 ---DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL  412 (500)
Q Consensus       337 ---~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l-asgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  412 (500)
                         .++.|++||+.... ....+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+.....+- 
T Consensus       219 ~~~~~~~v~~~d~~~~~-~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~-  295 (391)
T 1l0q_A          219 VDKYFNTVSMIDTGTNK-ITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFI-  295 (391)
T ss_dssp             ECSSCCEEEEEETTTTE-EEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCE-
T ss_pred             cCcCCCcEEEEECCCCe-EEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceee-
Confidence               78999999986543 333444444 57899999999877 677889999999999999999998887654211100 


Q ss_pred             eeeecCCCC-ceeeeeccccceeeEEcCCC--CEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEE
Q 010816          413 IYCFRYPSN-FYCVVDMSCCMSLYSWSADS--RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG  489 (500)
Q Consensus       413 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~  489 (500)
                       ..  .+.. .....+...... -.+.|..  ..+...+.|..+++||...+...    .+..+  ...|+++|.+.++.
T Consensus       296 -~~--~~~~~~~~~a~fs~~~~-~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~----~~~~~--~~~~~~~g~y~~~~  365 (391)
T 1l0q_A          296 -GS--IPVQPVYPSADFKSNIT-SGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS----KKQNP--THTYSETGIYTVRL  365 (391)
T ss_dssp             -EE--CSSCCCCCBCCEEESCC-SSEEETTCCEEEEECCBSCSEEEEECSSSCEE----CSSSC--EECCSSCEEEEEEE
T ss_pred             -ec--ccccccccccccccccc-cccccccceEEEEeCCCCceEEEEECCCCccc----CcCCC--eEEeCCCceEEEEE
Confidence             00  0000 000000000000 0011112  34666777899999999776542    12222  35688888887654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.5e-28  Score=238.06  Aligned_cols=247  Identities=15%  Similarity=0.124  Sum_probs=194.5

Q ss_pred             ccCCcccEEEEEEcCCCCeE-EEEeCCCcEEEEeCC--CCceeEEec--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816          104 IAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLN--TQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~l-at~~~d~~i~iwd~~--~~~~~~~~~--~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      ..+|.+.|.+++|+|++++| |+|+.|++|+|||+.  ++..+..+.  .|...|.+++|+|++++|++|+.|+.|++|+
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            46789999999999999996 899999999999998  777776665  6778999999999999999999999999999


Q ss_pred             CCCCCccc---ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-ecCccccEEEEEeCCCC-e
Q 010816          179 PQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG-V  253 (500)
Q Consensus       179 ~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~  253 (500)
                      +.+++...   ..+.+|...|.++.|+|..  ..+..+++|+.|+.|++||+++++++.. +.+|...|.+++|+ ++ .
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~  254 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDS--DGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYL  254 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECT--TSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCC--CCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCE
Confidence            98776432   2567899999999999841  0146899999999999999999988877 56999999999999 65 7


Q ss_pred             EEEEeCCCeEEEEeCCCCeeEEEeecCC-------------------------ceEEEEEecCcceeeeccccCCCCCCC
Q 010816          254 IYTGSQDCTIKVWETTQGKLIRELKGHG-------------------------HWVNSLALSTEYALRTGAFDHTGKQYS  308 (500)
Q Consensus       254 l~t~~~dg~i~lwd~~~~~~~~~~~~~~-------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (500)
                      |++++.|+.|++||+.+++.+..+..+.                         ..+..++++++                
T Consensus       255 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----------------  318 (450)
T 2vdu_B          255 LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN----------------  318 (450)
T ss_dssp             EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS----------------
T ss_pred             EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC----------------
Confidence            8999999999999999998887775321                         22333333332                


Q ss_pred             CHHHHHHHHHHhhhhhcCCCCcEEEEee-CCCeEEEEcC--CCCC--CCceeeecccCcEEEEEECCCCCEEEEEeC---
Q 010816          309 SPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEP--AVSK--QPKTRMTGHQQLVNHVYFSPDGQWVASASF---  380 (500)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~d~~v~~wd~--~~~~--~~~~~~~~h~~~v~~l~~sp~g~~lasgs~---  380 (500)
                                          +..+++++ .|+.|++|++  ....  .....+.+| ..|.+++|+|++.++++++.   
T Consensus       319 --------------------~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~  377 (450)
T 2vdu_B          319 --------------------LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESS  377 (450)
T ss_dssp             --------------------SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCC
T ss_pred             --------------------CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCC
Confidence                                35677777 8999999998  3221  233445666 78999999996555554443   


Q ss_pred             ---CCcEEEEeCC
Q 010816          381 ---DKSIKLWNGT  390 (500)
Q Consensus       381 ---Dg~i~lwd~~  390 (500)
                         ++.|++|.+.
T Consensus       378 ~~~~~~i~v~~~~  390 (450)
T 2vdu_B          378 GVQKNFAKFIEYN  390 (450)
T ss_dssp             SSCCCSEEEEEEE
T ss_pred             CCCCcceEEEEEE
Confidence               5568888654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=9.9e-28  Score=240.09  Aligned_cols=315  Identities=13%  Similarity=0.072  Sum_probs=234.9

Q ss_pred             EEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCCcccccccCc
Q 010816          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP--QTGKPSGNPLSGH  192 (500)
Q Consensus       115 ~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~~~~~  192 (500)
                      +|+|++.++++++.|++|.+||..+++.+..+..+.. +.+++|+|||++|++++.|++|.+||+  .+++.... +. +
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~-i~-~  220 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE-IK-I  220 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE-EE-C
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE-Ee-c
Confidence            3889999999999999999999999998888873333 899999999999999999999999999  77665432 22 2


Q ss_pred             ccceEEEEeeeeecCCCCceEEEEe-CCCcEEEEECCCCeEEEEecCc----------c-ccEEEEEeCCCC--eEEEEe
Q 010816          193 KKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGH----------T-LAVTCVKWGGDG--VIYTGS  258 (500)
Q Consensus       193 ~~~v~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~~~~~~~h----------~-~~v~~~~~~~~~--~l~t~~  258 (500)
                      .....++.|+|.. ..+++++++++ .+++|.+||..+++++..+..+          . ..+.++.+++++  .+++..
T Consensus       221 g~~p~~va~sp~~-~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          221 GIEARSVESSKFK-GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             CSEEEEEEECCST-TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCcceEEeCCCc-CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            3345677776510 00456677776 5899999999999988877642          2 268889999865  466778


Q ss_pred             CCCeEEEEeCCCCeeEE--EeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE-EEEe
Q 010816          259 QDCTIKVWETTQGKLIR--ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSG  335 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~  335 (500)
                      .++.|.+||..+++.+.  .+ .+...+..++++|+                                    +.+ ++++
T Consensus       300 ~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spd------------------------------------g~~l~va~  342 (543)
T 1nir_A          300 ETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSS------------------------------------HRYFMTAA  342 (543)
T ss_dssp             TTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTT------------------------------------SCEEEEEE
T ss_pred             CCCeEEEEEecCCCcceeEEe-ccCcCccCceECCC------------------------------------CCEEEEEe
Confidence            89999999998765443  22 23444555666554                                    233 4455


Q ss_pred             eCCCeEEEEcCCCCCCCceeee----cccCcEEEEEECCC-CCEEEEEe-CCCcEEEEeCCC-------CceEEEEeCCc
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPD-GQWVASAS-FDKSIKLWNGTT-------GKFVAVFRGHV  402 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~----~h~~~v~~l~~sp~-g~~lasgs-~Dg~i~lwd~~~-------~~~~~~~~~h~  402 (500)
                      ..+++|.+||....+. ...+.    .|......+ ++|+ |..++++. .|++|.+||..+       ++++.++++|.
T Consensus       343 ~~~~~v~v~D~~tg~l-~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g  420 (543)
T 1nir_A          343 NNSNKVAVIDSKDRRL-SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG  420 (543)
T ss_dssp             GGGTEEEEEETTTTEE-EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred             cCCCeEEEEECCCCeE-EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence            6789999999875432 22232    255443333 5777 67777776 589999999998       88999999887


Q ss_pred             ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-------CCCcEEEEECCCcccc-ccc-------
Q 010816          403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-------KDSTLKVWDIRTQKLK-QDL-------  467 (500)
Q Consensus       403 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-------~d~~v~iwd~~~~~~~-~~~-------  467 (500)
                      +.+..+                           +++|+|++|++++       .+++|.+||+.+++.. ..+       
T Consensus       421 ~~~~~v---------------------------~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~  473 (543)
T 1nir_A          421 GGSLFI---------------------------KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD  473 (543)
T ss_dssp             SCCCCE---------------------------ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC
T ss_pred             CCceEE---------------------------EcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcc
Confidence            654444                           4699999999987       2779999999988765 332       


Q ss_pred             -cCcccCEEEEEEcCCCCEEEEEe-----CCCcEEEec
Q 010816          468 -PGHADEVFAVDWSPDGEKVASGG-----KDRVLKLWM  499 (500)
Q Consensus       468 -~~h~~~V~~l~~s~dg~~l~s~~-----~D~~v~iW~  499 (500)
                       ..+...+..+.|+|||+.|..+.     .|+.|.||+
T Consensus       474 ~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D  511 (543)
T 1nir_A          474 LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  511 (543)
T ss_dssp             CCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred             cCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence             45677899999999999998662     479999997

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.9e-27  Score=230.95  Aligned_cols=299  Identities=16%  Similarity=0.157  Sum_probs=227.8

Q ss_pred             ccEEEEEEcCCCC-eEEEEe----CCC----cEEEEeC--CCCcee--EEecCCCCCEEEEEEcC--------------C
Q 010816          109 EAVLSVAFSPDGR-QLASGS----GDT----TVRLWDL--NTQTPM--FKCTGHKNWVLCIAWSA--------------D  161 (500)
Q Consensus       109 ~~V~~~~~sp~~~-~lat~~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~v~~s~--------------~  161 (500)
                      ..|...+|.+.|. ++++|+    .||    +++|||+  .+++++  ..+.+|...+..+++++              .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            4566677888775 555776    567    8999999  888877  44788888888777764              2


Q ss_pred             CCEEEEEeCC------CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC---cEEEEECCCCeE
Q 010816          162 GKHLVSGSKA------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLRKC  232 (500)
Q Consensus       162 ~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg---~v~iwd~~~~~~  232 (500)
                      +..++.++.+      +.|++||+..+..  ..+.+|...+.+++|+|     +++++++++.++   .|++||+.++++
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--~~l~~~~~~v~~~~~Sp-----dg~~la~~s~~~~~~~i~~~d~~tg~~  215 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ--FVVHRSPQPLMSPAWSP-----DGSKLAYVTFESGRSALVIQTLANGAV  215 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSC--EEEEEESSCEEEEEECT-----TSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCC--EEEeCCCCcceeeEEcC-----CCCEEEEEEecCCCcEEEEEECCCCcE
Confidence            5677766654      7999999975432  34667888999999987     556899998875   999999998887


Q ss_pred             EEEecCccccEEEEEeCCCCe-EE-EEeCCCe--EEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCC
Q 010816          233 VICLSGHTLAVTCVKWGGDGV-IY-TGSQDCT--IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (500)
Q Consensus       233 ~~~~~~h~~~v~~~~~~~~~~-l~-t~~~dg~--i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (500)
                      . .+..|...+.+++|+||+. |+ +++.|+.  |++||+.+++. ..+..+...+.+++++|+.               
T Consensus       216 ~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg---------------  278 (415)
T 2hqs_A          216 R-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDS---------------  278 (415)
T ss_dssp             E-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTS---------------
T ss_pred             E-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCC---------------
Confidence            5 4667888899999999984 55 5666654  99999988765 5666777788888888763               


Q ss_pred             CHHHHHHHHHHhhhhhcCCCCcEEEEeeC-CC--eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC---C
Q 010816          309 SPEEMKKAALERYNKIKGNAPERLVSGSD-DF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---K  382 (500)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~-d~--~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D---g  382 (500)
                                           ..++.++. ++  .|++||+....  ...+..+...+.+++|+|||++|++++.+   .
T Consensus       279 ---------------------~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~  335 (415)
T 2hqs_A          279 ---------------------QNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQ  335 (415)
T ss_dssp             ---------------------SEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCE
T ss_pred             ---------------------CEEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEEECcCCce
Confidence                                 45666665 45  67777876443  33455667789999999999999988865   5


Q ss_pred             cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC---cEEEEECC
Q 010816          383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS---TLKVWDIR  459 (500)
Q Consensus       383 ~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~---~v~iwd~~  459 (500)
                      .|++||+.+++.. .+..|. .+..+                           +|+|+|++|++++.|+   .|++||+.
T Consensus       336 ~i~~~d~~~~~~~-~l~~~~-~~~~~---------------------------~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          336 HIAKQDLATGGVQ-VLSSTF-LDETP---------------------------SLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             EEEEEETTTCCEE-ECCCSS-SCEEE---------------------------EECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             EEEEEECCCCCEE-EecCCC-CcCCe---------------------------EEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            8999999988764 344332 33333                           7899999999998877   79999987


Q ss_pred             CccccccccCcccCEEEEEEcCCCC
Q 010816          460 TQKLKQDLPGHADEVFAVDWSPDGE  484 (500)
Q Consensus       460 ~~~~~~~~~~h~~~V~~l~~s~dg~  484 (500)
                      . +....+.+|.+.|.+++|+|...
T Consensus       387 g-~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          387 G-RFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             S-CCEEECCCSSSEEEEEEECCCCC
T ss_pred             C-CcEEEeeCCCCCCcCCccccccc
Confidence            4 45667889999999999999754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=1.7e-26  Score=242.16  Aligned_cols=317  Identities=14%  Similarity=0.152  Sum_probs=231.2

Q ss_pred             cccEEEEEEcCCCCeEEEEeC-CC-----cEEEEeCCCCceeEEecCCCC------------------------CEEEEE
Q 010816          108 TEAVLSVAFSPDGRQLASGSG-DT-----TVRLWDLNTQTPMFKCTGHKN------------------------WVLCIA  157 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~-d~-----~i~iwd~~~~~~~~~~~~h~~------------------------~v~~v~  157 (500)
                      ...|.+++|+|||++||+++. |+     +|++||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456899999999999999998 88     899999999877655554432                        378999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCC---CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE
Q 010816          158 WSADGKHLVSGSKAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI  234 (500)
Q Consensus       158 ~s~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~  234 (500)
                      |+|||++|++++. +.|.+||+.++   ..  ..+..|...+..+.|+|     ++++++.++ ++.|++||+.+++...
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~--~~l~~~~~~~~~~~~SP-----DG~~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV--RQLTHGEGFATDAKLSP-----KGGFVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSC--CBCCCSSSCEEEEEECT-----TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceE--EEcccCCcccccccCCC-----CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence            9999999999886 99999999887   43  24566777889999987     556777776 5699999999887766


Q ss_pred             EecCcccc----------------EEEEEeCCCCe-EEEEeCCC---------------------------------eEE
Q 010816          235 CLSGHTLA----------------VTCVKWGGDGV-IYTGSQDC---------------------------------TIK  264 (500)
Q Consensus       235 ~~~~h~~~----------------v~~~~~~~~~~-l~t~~~dg---------------------------------~i~  264 (500)
                      ....+...                +.++.|++||. |++++.|+                                 .|.
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            55544432                36789999984 77776665                                 788


Q ss_pred             EEeCCC-CeeEEEee--cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-----
Q 010816          265 VWETTQ-GKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-----  336 (500)
Q Consensus       265 lwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-----  336 (500)
                      +||+.+ ++......  .+...+..+++ ++.                                    ..++.++     
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg------------------------------------~~l~~~~~~~~~  309 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDP------------------------------------QHLSFQRQSRDQ  309 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EET------------------------------------TEEEEEEEETTS
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCC------------------------------------CEEEEEEecccC
Confidence            999988 77654433  36677888888 763                                    3444333     


Q ss_pred             CCCeEEEEcCCCCCCCceeeecccC----cEEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceEEEEeCCcccEEEEEee
Q 010816          337 DDFTMFLWEPAVSKQPKTRMTGHQQ----LVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQIRFE  411 (500)
Q Consensus       337 ~d~~v~~wd~~~~~~~~~~~~~h~~----~v~~l~~sp~g~~lasgs~Dg~i~lwd~~-~~~~~~~~~~h~~~v~~~~~~  411 (500)
                      .+..|++||+..... ...+..+..    .+..++|+|||+++++++.||.++||.+. +++ ...+..|...+..+   
T Consensus       310 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~---  384 (741)
T 2ecf_A          310 KKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDEL---  384 (741)
T ss_dssp             SEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEE---
T ss_pred             CeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeE---
Confidence            356899999865432 223333332    34688999999999999999988888665 344 66666666655443   


Q ss_pred             eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCC--cEEEEECCC-ccccccccCcccCEEEEEEcCCCCEEE
Q 010816          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDS--TLKVWDIRT-QKLKQDLPGHADEVFAVDWSPDGEKVA  487 (500)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~--~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~dg~~l~  487 (500)
                                             .+|+|+|+.|+.. +.|+  .++||++.. ++....+.+ ...+..++|||||++|+
T Consensus       385 -----------------------~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~  440 (741)
T 2ecf_A          385 -----------------------LAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYV  440 (741)
T ss_dssp             -----------------------EEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEE
T ss_pred             -----------------------eEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEE
Confidence                                   1479999877654 4455  899999864 444555655 56789999999999988


Q ss_pred             EEeCC----CcEEEec
Q 010816          488 SGGKD----RVLKLWM  499 (500)
Q Consensus       488 s~~~D----~~v~iW~  499 (500)
                      ....+    ..+++|+
T Consensus       441 ~~~~~~~~p~~~~l~~  456 (741)
T 2ecf_A          441 DSWSNNSTPPQIELFR  456 (741)
T ss_dssp             EEEEETTEEEEEEEEE
T ss_pred             EEecCCCCCCeEEEEE
Confidence            76443    3455553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.96  E-value=1.5e-26  Score=250.73  Aligned_cols=351  Identities=14%  Similarity=0.139  Sum_probs=233.7

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCC------CcEEEEeCCCCceeEEecCCCCCE-------EEEEEcCCCCEEE
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGD------TTVRLWDLNTQTPMFKCTGHKNWV-------LCIAWSADGKHLV  166 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d------~~i~iwd~~~~~~~~~~~~h~~~v-------~~v~~s~~~~~l~  166 (500)
                      ....+.+|.+.|.+++|||||++||+++.+      ..|++||+.++. ...+..|...+       .+++|+|||++++
T Consensus        44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~  122 (1045)
T 1k32_A           44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLII  122 (1045)
T ss_dssp             CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred             cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEE
Confidence            345677899999999999999999988643      479999998876 56778898888       9999999999777


Q ss_pred             EEeCC------CeEEEEeCCCCCcccc------------------------------------------------cccCc
Q 010816          167 SGSKA------GELQCWDPQTGKPSGN------------------------------------------------PLSGH  192 (500)
Q Consensus       167 s~~~d------~~i~~wd~~~~~~~~~------------------------------------------------~~~~~  192 (500)
                      +++.+      ..|.+|++.+++....                                                .+.+|
T Consensus       123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~  202 (1045)
T 1k32_A          123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM  202 (1045)
T ss_dssp             EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred             EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence            77754      3577788765542110                                                01123


Q ss_pred             ccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCC
Q 010816          193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQ  270 (500)
Q Consensus       193 ~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~  270 (500)
                      ...+.++.|.+     + ..+++++.|+.++||.+.. +.....+..|. .+.+..|+++|. |+.+ .++.|.+||+..
T Consensus       203 ~~~v~~~~~s~-----d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~  274 (1045)
T 1k32_A          203 STHVSSPVIVG-----H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT  274 (1045)
T ss_dssp             SSCCEEEEEET-----T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred             CCcccceEEeC-----C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence            33444455543     2 3566777888889997653 33334444444 344567888775 4444 588888888743


Q ss_pred             CeeEEEeecC-------------CceEEE--------EEecCcceeeeccccCCCCC---CCCHHHHHHHHHHhhhhh-c
Q 010816          271 GKLIRELKGH-------------GHWVNS--------LALSTEYALRTGAFDHTGKQ---YSSPEEMKKAALERYNKI-K  325 (500)
Q Consensus       271 ~~~~~~~~~~-------------~~~v~~--------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~  325 (500)
                      .+ +..+..+             ...-..        +++.....+..  ++.....   .....      -.....+ .
T Consensus       275 ~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~--~~~~~~~~~~~~~~~------~~~~~~~~~  345 (1045)
T 1k32_A          275 EK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFI--QDVSGTYVLKVPEPL------RIRYVRRGG  345 (1045)
T ss_dssp             CC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEE--ECTTSSBEEECSCCS------CEEEEEECS
T ss_pred             eE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEE--EcCCCCceEEccCCC------cceEEeeeE
Confidence            32 2233221             011111        11111111100  0000000   00000      0000000 1


Q ss_pred             CCCCcEEEEeeCCCeEE-EEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc
Q 010816          326 GNAPERLVSGSDDFTMF-LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP  404 (500)
Q Consensus       326 ~~~~~~~~s~s~d~~v~-~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~  404 (500)
                      . .+..++.++.+..+. +|+.....  ...+.+|...+..++|||||++||+++.|+.|++||+.+++....+.+|.+.
T Consensus       346 s-dg~~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~  422 (1045)
T 1k32_A          346 D-TKVAFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM  422 (1045)
T ss_dssp             S-SEEEEEEEETTEEEEEEEETTTCC--EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred             c-CCCeEEEEECCCceEEEEECCCCC--ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC
Confidence            1 235677777788888 88875432  2334478888999999999999999999999999999999988877777776


Q ss_pred             EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC----------cEEEEECCCccccccccCcccCE
Q 010816          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS----------TLKVWDIRTQKLKQDLPGHADEV  474 (500)
Q Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~----------~v~iwd~~~~~~~~~~~~h~~~V  474 (500)
                      +..+                           +|||||++|++++.++          .|++||+.+++ ...+..|...+
T Consensus       423 v~~~---------------------------~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~  474 (1045)
T 1k32_A          423 ITDF---------------------------TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHD  474 (1045)
T ss_dssp             CCCE---------------------------EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBE
T ss_pred             ccce---------------------------EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCccc
Confidence            5544                           6899999999887654          89999999887 56677888889


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          475 FAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       475 ~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ..++|+|||++|++++.++..++|+
T Consensus       475 ~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          475 YAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             EEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             CCceEcCCCCEEEEEecccCCcCcc
Confidence            9999999999999999988777775

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.4e-27  Score=247.80  Aligned_cols=221  Identities=22%  Similarity=0.335  Sum_probs=182.1

Q ss_pred             cccccccCCcccEEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCC--CCEEEEEeCCC
Q 010816           99 RCSATIAGHTEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAG  172 (500)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~--~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~  172 (500)
                      .+...+.+|.++|.+++|+|+  +++|++|+.||+|++||+.++.  ....+.+|...|.+++|+|+  ++++++|+.||
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  123 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  123 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence            345567899999999999998  9999999999999999999876  66778899999999999999  99999999999


Q ss_pred             eEEEEeCCCCCc-ccccccCcccceEEEEeeeeec--------CCCCceEEEEeCCCcEEEEECCCC----eEEEEecCc
Q 010816          173 ELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHL--------NAPCRRFVSASKDGDARIWDVSLR----KCVICLSGH  239 (500)
Q Consensus       173 ~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~s~s~dg~v~iwd~~~~----~~~~~~~~h  239 (500)
                      .|++||+.++.. ....+.+|...|.++.|.|...        ..++..+++|+.||.|++||++.+    .+...+.+|
T Consensus       124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h  203 (753)
T 3jro_A          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (753)
T ss_dssp             EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence            999999987743 2234578899999999988411        113568999999999999999876    566778899


Q ss_pred             cccEEEEEeCCC---C-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHH
Q 010816          240 TLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (500)
Q Consensus       240 ~~~v~~~~~~~~---~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (500)
                      ...|.+++|+++   + .+++|+.||.|++||+.++....                                        
T Consensus       204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~----------------------------------------  243 (753)
T 3jro_A          204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW----------------------------------------  243 (753)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC----------------------------------------
T ss_pred             CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc----------------------------------------
Confidence            999999999998   5 58899999999999987642100                                        


Q ss_pred             HHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816          316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (500)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~  393 (500)
                                                        ........+|...|.+++|+|+|++|++|+.||.|++||+.++.
T Consensus       244 ----------------------------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          244 ----------------------------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             ----------------------------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             ----------------------------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence                                              00011123567788999999999999999999999999998643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=4e-25  Score=221.21  Aligned_cols=301  Identities=15%  Similarity=0.124  Sum_probs=220.6

Q ss_pred             ccccccc-CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeC--CCCceeEEecCCCCCEEEEEEcC----CCCEEEEEeC-
Q 010816           99 RCSATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL--NTQTPMFKCTGHKNWVLCIAWSA----DGKHLVSGSK-  170 (500)
Q Consensus        99 ~~~~~~~-gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~--~~~~~~~~~~~h~~~v~~v~~s~----~~~~l~s~~~-  170 (500)
                      .+..++. ||.  +.+++|+|||++|++++.|++|++||+  .+++.+..+. +...+..++|+|    ||++|++++. 
T Consensus       170 ~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~  246 (543)
T 1nir_A          170 KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYW  246 (543)
T ss_dssp             CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEcc
Confidence            3455565 444  889999999999999999999999999  7887777776 455689999999    9999999885 


Q ss_pred             CCeEEEEeCCCCCccccccc-C--------cc-cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE--EecC
Q 010816          171 AGELQCWDPQTGKPSGNPLS-G--------HK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSG  238 (500)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~-~--------~~-~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~--~~~~  238 (500)
                      +++|.+||..+++....... +        |. ..+.++.++|..    ...+++...++.|.+||..+.+.+.  .+ .
T Consensus       247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~----~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~  321 (543)
T 1nir_A          247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH----PEFIVNVKETGKVLLVNYKDIDNLTVTSI-G  321 (543)
T ss_dssp             SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS----SEEEEEETTTTEEEEEECTTSSSCEEEEE-E
T ss_pred             CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC----CEEEEEECCCCeEEEEEecCCCcceeEEe-c
Confidence            89999999988876543211 1        22 256677776532    2457788889999999998765433  23 2


Q ss_pred             ccccEEEEEeCCCCe-EEE-EeCCCeEEEEeCCCCeeEEEeec----CCceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816          239 HTLAVTCVKWGGDGV-IYT-GSQDCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (500)
Q Consensus       239 h~~~v~~~~~~~~~~-l~t-~~~dg~i~lwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (500)
                      +...+.++.|++++. +++ +..+++|.+||..+++++..+..    |......+ ++++                    
T Consensus       322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~--------------------  380 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK--------------------  380 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT--------------------
T ss_pred             cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC--------------------
Confidence            445567789999985 444 45689999999999998877753    22111111 1221                    


Q ss_pred             HHHHHHHhhhhhcCCCCcEEEEee-CCCeEEEEcCCCC------CCCceeeecccCcEEEEEECCCCCEEEEEe------
Q 010816          313 MKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWVASAS------  379 (500)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~------~~~~~~~~~h~~~v~~l~~sp~g~~lasgs------  379 (500)
                                     .+..+++++ .|++|.+||....      ......+.+|...+..++|+|+|++|++++      
T Consensus       381 ---------------~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~  445 (543)
T 1nir_A          381 ---------------YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA  445 (543)
T ss_dssp             ---------------TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred             ---------------CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence                           123456665 6899999998652      234566778888888999999999999987      


Q ss_pred             -CCCcEEEEeCCCCceE-EEE--------eCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-
Q 010816          380 -FDKSIKLWNGTTGKFV-AVF--------RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-  448 (500)
Q Consensus       380 -~Dg~i~lwd~~~~~~~-~~~--------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-  448 (500)
                       .+++|.+||..+++.. ..+        ..+...+..+                           .|+|+|+.++.+. 
T Consensus       446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------------------------~~~~~g~~~~~s~~  498 (543)
T 1nir_A          446 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP---------------------------EYNKRGDEVWFSVW  498 (543)
T ss_dssp             HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEE---------------------------EECSSSSEEEEEEE
T ss_pred             ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEec---------------------------cCCCCCCEEEEEee
Confidence             3789999999998866 443        2333334333                           6799999988763 


Q ss_pred             ----CCCcEEEEECCCccccccccCc
Q 010816          449 ----KDSTLKVWDIRTQKLKQDLPGH  470 (500)
Q Consensus       449 ----~d~~v~iwd~~~~~~~~~~~~h  470 (500)
                          .|+.|.|||.+++++++.++++
T Consensus       499 ~~~~~~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          499 NGKNDSSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             CCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             cCCCCCCeEEEEECCCceEEEeecCC
Confidence                3799999999999998887754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=1.2e-25  Score=235.14  Aligned_cols=311  Identities=14%  Similarity=0.117  Sum_probs=216.5

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCC---CEEEEEEcCCCCEEEEEeCC---------CeEEEE
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSADGKHLVSGSKA---------GELQCW  177 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~---~v~~v~~s~~~~~l~s~~~d---------~~i~~w  177 (500)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+.+|..   .|.+++|||||++|++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            3567899999998877 7899999999999887777777665   49999999999999998764         788899


Q ss_pred             eCCCCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccE-------------
Q 010816          178 DPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-------------  243 (500)
Q Consensus       178 d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v-------------  243 (500)
                      |+.+++... ....+|...+..+.|+|     +++.++.++. +.|++||+.+++.......+...+             
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SP-----dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee  170 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGP-----KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE  170 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCS-----STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred             ECCCCceEeccCCccccccccccEECC-----CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence            999887521 11234445577888877     5567888776 799999999887776655544333             


Q ss_pred             -----EEEEeCCCCe-EEEEeCCC----------------------------------eEEEEeCCCCeeEEEeecC---
Q 010816          244 -----TCVKWGGDGV-IYTGSQDC----------------------------------TIKVWETTQGKLIRELKGH---  280 (500)
Q Consensus       244 -----~~~~~~~~~~-l~t~~~dg----------------------------------~i~lwd~~~~~~~~~~~~~---  280 (500)
                           .++.|+|||. |++++.|+                                  .|++||+.+++....+..+   
T Consensus       171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~  250 (723)
T 1xfd_A          171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP  250 (723)
T ss_dssp             TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred             eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence                 7899999984 66665442                                  7999999888765555543   


Q ss_pred             ---CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee----CCCeEEEEcCCCCCCCc
Q 010816          281 ---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS----DDFTMFLWEPAVSKQPK  353 (500)
Q Consensus       281 ---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s----~d~~v~~wd~~~~~~~~  353 (500)
                         ...+..++++|+..                                    .++..+    .+..|++||+.......
T Consensus       251 ~~~~~~~~~~~~SpDg~------------------------------------~l~~~~~~~~~~~~i~~~d~~~g~~~~  294 (723)
T 1xfd_A          251 RMREYYITMVKWATSTK------------------------------------VAVTWLNRAQNVSILTLCDATTGVCTK  294 (723)
T ss_dssp             GGSSEEEEEEEESSSSE------------------------------------EEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             CCccceeEEEEEeCCCe------------------------------------EEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence               56788888888642                                    343332    34578999976543222


Q ss_pred             eeeecccCcEE----EEEECCCCCEEEE--EeCCC------cEEEEe-CCCCc--eEEEEeCCcccEEEEEeeeeeeecC
Q 010816          354 TRMTGHQQLVN----HVYFSPDGQWVAS--ASFDK------SIKLWN-GTTGK--FVAVFRGHVGPVYQIRFELIYCFRY  418 (500)
Q Consensus       354 ~~~~~h~~~v~----~l~~sp~g~~las--gs~Dg------~i~lwd-~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~  418 (500)
                      .....+...+.    .++|+|||+.|+.  +..|+      .|++|| ..+++  +...+..+...+..           
T Consensus       295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~-----------  363 (723)
T 1xfd_A          295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK-----------  363 (723)
T ss_dssp             EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE-----------
T ss_pred             EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEe-----------
Confidence            11123334443    7899999997764  45677      577788 34443  02223222222211           


Q ss_pred             CCCceeeeeccccceeeEEcCCCCEEEEEECC---CcEEEEECCCcc--ccccccC---cccCEEEEEEcCCCCEEEEE
Q 010816          419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD---STLKVWDIRTQK--LKQDLPG---HADEVFAVDWSPDGEKVASG  489 (500)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d---~~v~iwd~~~~~--~~~~~~~---h~~~V~~l~~s~dg~~l~s~  489 (500)
                                     .++|+|+|+.|+..+.+   +.++||++....  ....+..   |...+..++|+|||++|+..
T Consensus       364 ---------------~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          364 ---------------ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             ---------------EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             ---------------eeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence                           13689999999877665   789999986432  2334443   66778899999999988764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1.4e-24  Score=210.90  Aligned_cols=279  Identities=17%  Similarity=0.152  Sum_probs=204.9

Q ss_pred             CCEEEEEEcCCCC-EEEEEe----CCC----eEEEEeC--CCCCccc-ccccCcccceEEEEeeeee---------cCCC
Q 010816          151 NWVLCIAWSADGK-HLVSGS----KAG----ELQCWDP--QTGKPSG-NPLSGHKKWITGISWEPVH---------LNAP  209 (500)
Q Consensus       151 ~~v~~v~~s~~~~-~l~s~~----~d~----~i~~wd~--~~~~~~~-~~~~~~~~~v~~~~~~~~~---------~~~~  209 (500)
                      ..+....|++.|. ++++|+    .||    ++++||+  .+++... ..+.+|...+..+.+.+..         ....
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            3566677777764 555775    467    8999999  8887542 2356676666655544310         0011


Q ss_pred             CceEEEEeCC------CcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCC---eEEEEeCCCCeeEEEeec
Q 010816          210 CRRFVSASKD------GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC---TIKVWETTQGKLIRELKG  279 (500)
Q Consensus       210 ~~~~~s~s~d------g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg---~i~lwd~~~~~~~~~~~~  279 (500)
                      ..+++.++.+      +.|++||+.. .....+.+|...+.+++|+|++ .|++++.|+   .|++||+.+++.. .+..
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~  220 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS  220 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence            3466666554      7999999974 4456677889999999999998 477788775   9999999988765 4566


Q ss_pred             CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-EeeCCC--eEEEEcCCCCCCCceee
Q 010816          280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDF--TMFLWEPAVSKQPKTRM  356 (500)
Q Consensus       280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~d~--~v~~wd~~~~~~~~~~~  356 (500)
                      +...+.+++++|+.                                    ..++ +++.|+  .|++||+....  ...+
T Consensus       221 ~~~~~~~~~~spdg------------------------------------~~la~~~~~~g~~~i~~~d~~~~~--~~~l  262 (415)
T 2hqs_A          221 FPRHNGAPAFSPDG------------------------------------SKLAFALSKTGSLNLYVMDLASGQ--IRQV  262 (415)
T ss_dssp             CSSCEEEEEECTTS------------------------------------SEEEEEECTTSSCEEEEEETTTCC--EEEC
T ss_pred             CCCcccCEEEcCCC------------------------------------CEEEEEEecCCCceEEEEECCCCC--EEeC
Confidence            77788899998863                                    3454 666655  49999976543  3567


Q ss_pred             ecccCcEEEEEECCCCCEEEEEeC-CC--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccce
Q 010816          357 TGHQQLVNHVYFSPDGQWVASASF-DK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS  433 (500)
Q Consensus       357 ~~h~~~v~~l~~sp~g~~lasgs~-Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (500)
                      ..|...+.+++|+|||++|++++. ++  .|++||+.+++.. .+..|...+..+                         
T Consensus       263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~-------------------------  316 (415)
T 2hqs_A          263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDA-------------------------  316 (415)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEE-------------------------
T ss_pred             cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCe-------------------------
Confidence            788889999999999999998886 44  6888899887643 334444444333                         


Q ss_pred             eeEEcCCCCEEEEEECC---CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCC---cEEEec
Q 010816          434 LYSWSADSRLLLSGSKD---STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR---VLKLWM  499 (500)
Q Consensus       434 ~~~~s~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~---~v~iW~  499 (500)
                        +|+|+|++|++++.+   ..|++||+.+++.. .+..|. .+.+++|+|||++|++++.|+   .|++|+
T Consensus       317 --~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d  384 (415)
T 2hqs_A          317 --DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS  384 (415)
T ss_dssp             --EECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             --EECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence              689999999988864   58999999988764 455554 789999999999999998887   788886

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=6.9e-24  Score=229.93  Aligned_cols=341  Identities=13%  Similarity=0.072  Sum_probs=243.0

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecC-----------CCCCEEEEEEc-CCCCEEEE
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-----------HKNWVLCIAWS-ADGKHLVS  167 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~-----------h~~~v~~v~~s-~~~~~l~s  167 (500)
                      ....+.+|. .+...+|+|||++||.+. ++.|.+||+... .+..+.+           |...+.+++|+ |||++|++
T Consensus       237 ~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~  313 (1045)
T 1k32_A          237 DLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF  313 (1045)
T ss_dssp             SCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred             cceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEE
Confidence            344555565 356779999999999884 899999999543 3334444           34478999999 99999998


Q ss_pred             EeCCCeEEEEeCCCCCcccccccCccc-ceEEEEeeeeecCCCCceEEEEeCCCcEE-EEECCCCeEEEEecCccccEEE
Q 010816          168 GSKAGELQCWDPQTGKPSGNPLSGHKK-WITGISWEPVHLNAPCRRFVSASKDGDAR-IWDVSLRKCVICLSGHTLAVTC  245 (500)
Q Consensus       168 ~~~d~~i~~wd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~s~s~dg~v~-iwd~~~~~~~~~~~~h~~~v~~  245 (500)
                      ++ ++.|.+|+..++...  .+..|.. .+..+.|+      +++.++.++.+..++ +||+..++... +.+|...+.+
T Consensus       314 ~~-~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~s------dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~  383 (1045)
T 1k32_A          314 VS-RGQAFIQDVSGTYVL--KVPEPLRIRYVRRGGD------TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFA  383 (1045)
T ss_dssp             EE-TTEEEEECTTSSBEE--ECSCCSCEEEEEECSS------SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEE
T ss_pred             EE-cCEEEEEcCCCCceE--EccCCCcceEEeeeEc------CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceee
Confidence            87 889999999877543  2445555 67777774      345788888888888 99998776554 3488889999


Q ss_pred             EEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816          246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (500)
Q Consensus       246 ~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (500)
                      ++|++|+ .|++++.++.|++||+.+++.......|...+..++++|+.                               
T Consensus       384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG-------------------------------  432 (1045)
T 1k32_A          384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS-------------------------------  432 (1045)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS-------------------------------
T ss_pred             eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCC-------------------------------
Confidence            9999998 57789999999999999998877777888888888888863                               


Q ss_pred             cCCCCcEEEEeeCC----------CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 010816          325 KGNAPERLVSGSDD----------FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF  394 (500)
Q Consensus       325 ~~~~~~~~~s~s~d----------~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~  394 (500)
                           ..+++++.+          +.|++||+....  ...+..|...+..++|+|||++|+.++.++..++|+......
T Consensus       433 -----~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~  505 (1045)
T 1k32_A          433 -----RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  505 (1045)
T ss_dssp             -----CEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             -----CeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence                 345555543          489999986543  456677888899999999999999999999999998764432


Q ss_pred             EEEEeCCcccEEEEEeeeeee----------------ecCCC--Cceeee-eccccceeeEEcCCCCEEEE---------
Q 010816          395 VAVFRGHVGPVYQIRFELIYC----------------FRYPS--NFYCVV-DMSCCMSLYSWSADSRLLLS---------  446 (500)
Q Consensus       395 ~~~~~~h~~~v~~~~~~~~~~----------------~~~~~--~~~~~~-~~~~~~~~~~~s~~~~~l~s---------  446 (500)
                      .   ..+...++.+.+.....                .....  ...... .....+..++++|+|+++++         
T Consensus       506 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~  582 (1045)
T 1k32_A          506 S---FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA  582 (1045)
T ss_dssp             E---CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred             c---cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence            1   11222233222210000                00000  000000 01123455678999987775         


Q ss_pred             ----EECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          447 ----GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       447 ----~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                          ...+..+.+||+.+++... +.   ..+.+++|||||++|++++.| .|++|+
T Consensus       583 ~~~~~~~~~~l~~~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d  634 (1045)
T 1k32_A          583 YYQGAPEKGVLLKYDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDD-GKIYTF  634 (1045)
T ss_dssp             HHHCCCCCEEEEEEETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETT-SCEEEE
T ss_pred             cccccCCCceEEEEECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCC-cEEEEe
Confidence                1234578899998877532 22   568899999999999999887 688886

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=7.9e-24  Score=220.59  Aligned_cols=311  Identities=14%  Similarity=0.147  Sum_probs=214.8

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-EEecCCC-----------------CCEEEEEEcCCCCEEEEEeCCC
Q 010816          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHK-----------------NWVLCIAWSADGKHLVSGSKAG  172 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~v~~s~~~~~l~s~~~d~  172 (500)
                      +..++|.  |..+++++.|+ | +||+.+++.+ ..+..|.                 ..|.+++|+|| +.++.+ .|+
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence            3346777  66778888888 8 9999988762 2222332                 56999999999 666555 469


Q ss_pred             eEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-----CeEEEEecCcccc-----
Q 010816          173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----RKCVICLSGHTLA-----  242 (500)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-----~~~~~~~~~h~~~-----  242 (500)
                      .|++||+.+++..  .+..+...+.++.|+|     +++++++ +.|+.|++||+.+     ++.......+...     
T Consensus       102 ~i~~~d~~~~~~~--~l~~~~~~~~~~~~Sp-----dG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~  173 (706)
T 2z3z_A          102 GLVGFDMLARKVT--YLFDTNEETASLDFSP-----VGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ  173 (706)
T ss_dssp             EEEEEETTTTEEE--EEECCTTCCTTCEECT-----TSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred             EEEEEECCCCceE--EccCCcccccCCcCCC-----CCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence            9999999887543  2334556677788876     4567777 4789999999988     7766554444443     


Q ss_pred             ---------EEEEEeCCCCe-EEEEe---------------------------------CCCeEEEEeCCCCeeEEEee-
Q 010816          243 ---------VTCVKWGGDGV-IYTGS---------------------------------QDCTIKVWETTQGKLIRELK-  278 (500)
Q Consensus       243 ---------v~~~~~~~~~~-l~t~~---------------------------------~dg~i~lwd~~~~~~~~~~~-  278 (500)
                               +.++.|+|||. |++++                                 .+..|++||+.+++...... 
T Consensus       174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~  253 (706)
T 2z3z_A          174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG  253 (706)
T ss_dssp             CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred             chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence                     37899999984 66665                                 44789999999887654432 


Q ss_pred             -cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC-----eEEEEcCCCCCCC
Q 010816          279 -GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF-----TMFLWEPAVSKQP  352 (500)
Q Consensus       279 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~-----~v~~wd~~~~~~~  352 (500)
                       .+...+..++++|+.                                    ..++.++.++     .|++||+......
T Consensus       254 ~~~~~~~~~~~~spdg------------------------------------~~l~~~~~~~~~~~~~v~~~d~~~g~~~  297 (706)
T 2z3z_A          254 EPKEKFLTNLSWSPDE------------------------------------NILYVAEVNRAQNECKVNAYDAETGRFV  297 (706)
T ss_dssp             SCTTCEEEEEEECTTS------------------------------------SEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred             CCCceeEeeEEEECCC------------------------------------CEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence             456678888888763                                    4566666554     8999998654222


Q ss_pred             ceeee-cccC---cEEEEEECC--CCCEEEEEeCCCcEEEEeCC-CCceEEEEeCCcccEEEEEeeeeeeecCCCCceee
Q 010816          353 KTRMT-GHQQ---LVNHVYFSP--DGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV  425 (500)
Q Consensus       353 ~~~~~-~h~~---~v~~l~~sp--~g~~lasgs~Dg~i~lwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  425 (500)
                      ..... .+..   .+.+++|+|  ||++|++++.|+.++||++. +++.+..+..|...+..+                 
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~-----------------  360 (706)
T 2z3z_A          298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNF-----------------  360 (706)
T ss_dssp             EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEE-----------------
T ss_pred             eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEee-----------------
Confidence            22221 2222   236789999  99999999999999999876 566666676666555431                 


Q ss_pred             eeccccceeeEEcCCCCEEEEEECC-C----cEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC----CcEE
Q 010816          426 VDMSCCMSLYSWSADSRLLLSGSKD-S----TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD----RVLK  496 (500)
Q Consensus       426 ~~~~~~~~~~~~s~~~~~l~s~s~d-~----~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D----~~v~  496 (500)
                               ++|+|+|+.|+.++.+ +    .|..||+.+++. ..+. |...+.+++|||||++|+.+..+    +.|+
T Consensus       361 ---------~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~  429 (706)
T 2z3z_A          361 ---------AGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVT  429 (706)
T ss_dssp             ---------EEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEE
T ss_pred             ---------eEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEE
Confidence                     2679999988766554 3    567777777653 3343 66779999999999999876444    4699


Q ss_pred             Eec
Q 010816          497 LWM  499 (500)
Q Consensus       497 iW~  499 (500)
                      +|+
T Consensus       430 l~d  432 (706)
T 2z3z_A          430 VTN  432 (706)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=9.3e-24  Score=195.11  Aligned_cols=254  Identities=19%  Similarity=0.243  Sum_probs=181.8

Q ss_pred             EEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CCcccccccCc-ccceEEEEee
Q 010816          125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-GKPSGNPLSGH-KKWITGISWE  202 (500)
Q Consensus       125 t~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~-~~~v~~~~~~  202 (500)
                      +++.|++|++||+.+++.. .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++... ....+ ...+.++.|+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK-VDTGFATICNNDHGIS   93 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-CCCTTCCCBCSCCEEC
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-eccccccccccceEEC
Confidence            3467899999999887765 4556889999999999999999986 88999999998 76543 23333 4667788887


Q ss_pred             eeecCCCCceEEEEe--CCCcEEEEEC--CCCeEEEEecCccccEEEEEeCCCCe-EE-EEeCCCeEEEEeCCCCeeEEE
Q 010816          203 PVHLNAPCRRFVSAS--KDGDARIWDV--SLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRE  276 (500)
Q Consensus       203 ~~~~~~~~~~~~s~s--~dg~v~iwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-t~~~dg~i~lwd~~~~~~~~~  276 (500)
                      |     ++..+++++  .++..+||.+  ..++ ...+..+. .+.++.|++++. |+ +++.|+.+++|++....    
T Consensus        94 p-----dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~----  162 (297)
T 2ojh_A           94 P-----DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS----  162 (297)
T ss_dssp             T-----TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT----
T ss_pred             C-----CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCC----
Confidence            6     456788887  3345555544  4444 23333333 478888988873 43 67788888888742100    


Q ss_pred             eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee
Q 010816          277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM  356 (500)
Q Consensus       277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~  356 (500)
                                                                                                .....+
T Consensus       163 --------------------------------------------------------------------------~~~~~~  168 (297)
T 2ojh_A          163 --------------------------------------------------------------------------GVETRL  168 (297)
T ss_dssp             --------------------------------------------------------------------------CCEEEC
T ss_pred             --------------------------------------------------------------------------CcceEc
Confidence                                                                                      001112


Q ss_pred             ecccCcEEEEEECCCCCEEEEEe-CCCcEEEEeCC-CCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecccccee
Q 010816          357 TGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGT-TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL  434 (500)
Q Consensus       357 ~~h~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (500)
                      ..+...+.+++|+|+|++|+.++ .|+.+++|++. .+..+..+..|...+..+                          
T Consensus       169 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------------------  222 (297)
T 2ojh_A          169 THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFP--------------------------  222 (297)
T ss_dssp             CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEE--------------------------
T ss_pred             ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCe--------------------------
Confidence            23455688999999999888766 58999999876 455556666665544443                          


Q ss_pred             eEEcCCCCEEEEEECC-----------CcEEEEECCCcccc--ccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816          435 YSWSADSRLLLSGSKD-----------STLKVWDIRTQKLK--QDLPGHADEVFAVDWSPDGEKVASGGKDR  493 (500)
Q Consensus       435 ~~~s~~~~~l~s~s~d-----------~~v~iwd~~~~~~~--~~~~~h~~~V~~l~~s~dg~~l~s~~~D~  493 (500)
                       +|+|+|++|++++.+           +.|++||+.+++..  ..+.+|...+..++|+|||++|++++.|.
T Consensus       223 -~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          223 -HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             -EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             -EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence             679999999988876           56999999887653  34447888899999999999999887764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=2.2e-23  Score=218.47  Aligned_cols=281  Identities=11%  Similarity=0.074  Sum_probs=198.5

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC-CC-----eEEEEeCCCCCcccccccCcc------------------------cceEEE
Q 010816          150 KNWVLCIAWSADGKHLVSGSK-AG-----ELQCWDPQTGKPSGNPLSGHK------------------------KWITGI  199 (500)
Q Consensus       150 ~~~v~~v~~s~~~~~l~s~~~-d~-----~i~~wd~~~~~~~~~~~~~~~------------------------~~v~~~  199 (500)
                      ...+.+++|+|||++|++++. |+     .|.+||+.+++... .+..+.                        ..+.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL-LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE-EECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE-ccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            456899999999999999998 88     89999999886432 222221                        236677


Q ss_pred             EeeeeecCCCCceEEEEeCCCcEEEEECCCCe--EEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEE
Q 010816          200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRE  276 (500)
Q Consensus       200 ~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~  276 (500)
                      +|+|     +++++++++. +.|++||+.++.  ....+..|...+.++.|+|||. |+.++ ++.|++||+.+++..+.
T Consensus       115 ~~Sp-----Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          115 QWSP-----DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             EECT-----TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             EECC-----CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence            7776     5667887776 999999998873  3445667888899999999996 55444 67999999998876654


Q ss_pred             eecCCce----------------EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC-
Q 010816          277 LKGHGHW----------------VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF-  339 (500)
Q Consensus       277 ~~~~~~~----------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~-  339 (500)
                      ...+...                +..++++|+..                                    .++.++.|+ 
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~------------------------------------~l~~~~~d~~  231 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS------------------------------------AIAYARIDES  231 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS------------------------------------CEEEEEEECT
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCC------------------------------------EEEEEEEcCC
Confidence            4433322                25566776642                                    233333222 


Q ss_pred             --------------------------------eEEEEcCCC-CCCCceeee-cccCcEEEEEECCCCCEEEEEeC-----
Q 010816          340 --------------------------------TMFLWEPAV-SKQPKTRMT-GHQQLVNHVYFSPDGQWVASASF-----  380 (500)
Q Consensus       340 --------------------------------~v~~wd~~~-~~~~~~~~~-~h~~~v~~l~~sp~g~~lasgs~-----  380 (500)
                                                      .|++||+.. ......... .|...+..++| |||++|+.++.     
T Consensus       232 ~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~  310 (741)
T 2ecf_A          232 PVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQK  310 (741)
T ss_dssp             TSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSS
T ss_pred             CCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCC
Confidence                                            688888765 432211111 47778999999 99999997764     


Q ss_pred             CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC-
Q 010816          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR-  459 (500)
Q Consensus       381 Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~-  459 (500)
                      +..|++||+.+++....+..+.....                       ..+..++|+|||+++++++.|+.++||.+. 
T Consensus       311 ~~~i~~~d~~~g~~~~~~~~~~~~~~-----------------------~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~  367 (741)
T 2ecf_A          311 KLDLVEVTLASNQQRVLAHETSPTWV-----------------------PLHNSLRFLDDGSILWSSERTGFQHLYRIDS  367 (741)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCC-----------------------CCCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred             eEEEEEEECCCCceEEEEEcCCCCcC-----------------------CcCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence            56899999999987766554332100                       001223789999999999999988888765 


Q ss_pred             CccccccccCcccCEEEE-EEcCCCCEEEE-EeCCC--cEEEec
Q 010816          460 TQKLKQDLPGHADEVFAV-DWSPDGEKVAS-GGKDR--VLKLWM  499 (500)
Q Consensus       460 ~~~~~~~~~~h~~~V~~l-~~s~dg~~l~s-~~~D~--~v~iW~  499 (500)
                      .++ ...+..|...|..+ .|+|||++|+. ++.|+  +++||.
T Consensus       368 ~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          368 KGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             SSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             CCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence            344 66777888888887 59999998865 45555  888985

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=6e-22  Score=188.18  Aligned_cols=274  Identities=12%  Similarity=0.102  Sum_probs=201.6

Q ss_pred             cccEEEEEEcCCCCeEEEEeC-------CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeC
Q 010816          108 TEAVLSVAFSPDGRQLASGSG-------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDP  179 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~-------d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~  179 (500)
                      ...+..++|+|+++++++++.       ++.|.+||..+++.+..+.. ...+..++|+|+|++++ +...++.|.+||.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            346788999999999888874       56899999999887766653 34477899999999655 5556799999999


Q ss_pred             CCCCcccccccCccc--------ceEEEEeeeeecCCCCceEEEEe--CCCcEEEEECCCCeEEEEecCccccEEEEEeC
Q 010816          180 QTGKPSGNPLSGHKK--------WITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWG  249 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~s~s--~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~  249 (500)
                      .+++.......++..        ...++.|+|     ++++++.++  .++.|.+||..+++.+..+..+...+.++.|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s  193 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-----ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD  193 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-----TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECC-----CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence            988754322111111        256677766     344555444  57899999999999888877566667788999


Q ss_pred             CCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816          250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (500)
Q Consensus       250 ~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (500)
                      +++ .+++++.++.|.+||..+++....+...                                                
T Consensus       194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~------------------------------------------------  225 (353)
T 3vgz_A          194 SEGKRLYTTNADGELITIDTADNKILSRKKLL------------------------------------------------  225 (353)
T ss_dssp             TTTTEEEEECTTSEEEEEETTTTEEEEEEECC------------------------------------------------
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC------------------------------------------------
Confidence            886 5788888999999999887655433210                                                


Q ss_pred             CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~-Dg~i~lwd~~~~~~~~~~~~h~~~v~~  407 (500)
                                                 ..++...+..++|+|+|+++++++. ++.|.+||..+++.+..+.....    
T Consensus       226 ---------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----  274 (353)
T 3vgz_A          226 ---------------------------DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES----  274 (353)
T ss_dssp             ---------------------------CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC----
T ss_pred             ---------------------------CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC----
Confidence                                       0012335778999999997776665 59999999999988766553221    


Q ss_pred             EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEE
Q 010816          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV  486 (500)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l  486 (500)
                                               ..++|+|+|++++.++ .++.|.+||+.+++.+..+..+ ..+.+++|+|||++|
T Consensus       275 -------------------------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l  328 (353)
T 3vgz_A          275 -------------------------LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTL  328 (353)
T ss_dssp             -------------------------CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEE
T ss_pred             -------------------------ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEE
Confidence                                     1136799999766665 6899999999998887776654 467899999999987


Q ss_pred             EEEeCC
Q 010816          487 ASGGKD  492 (500)
Q Consensus       487 ~s~~~D  492 (500)
                      +.+..+
T Consensus       329 ~v~~~~  334 (353)
T 3vgz_A          329 YVSVKQ  334 (353)
T ss_dssp             EEEEEC
T ss_pred             EEEEcc
Confidence            766554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=3.5e-22  Score=188.13  Aligned_cols=275  Identities=10%  Similarity=0.090  Sum_probs=187.6

Q ss_pred             EEcCCCCe-EEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCcccccccCc
Q 010816          115 AFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKPSGNPLSGH  192 (500)
Q Consensus       115 ~~sp~~~~-lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~  192 (500)
                      .|.+++.+ +++++.++.|++||..+++.......+...+ +++|+|+|++|++++. ++.|.+||+.+++.....+..+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            45566555 6677889999999999998877776666667 9999999997776665 8999999999887522233444


Q ss_pred             ccceEEEEeeeeecCCCCceEEEEeCCC---cEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEE-EeCCCe-EEEE
Q 010816          193 KKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYT-GSQDCT-IKVW  266 (500)
Q Consensus       193 ~~~v~~~~~~~~~~~~~~~~~~s~s~dg---~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t-~~~dg~-i~lw  266 (500)
                      .....++.|+|     ++++++++..++   .|++||+.+++.+..+..+. ...+++|++++. +++ ...++. |.+|
T Consensus        83 ~~~~~~~~~s~-----dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~  156 (331)
T 3u4y_A           83 QSSMADVDITP-----DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRF  156 (331)
T ss_dssp             SSCCCCEEECT-----TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred             CCCccceEECC-----CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEE
Confidence            44444477765     455677555443   89999999998887766543 458899999973 544 456678 9999


Q ss_pred             eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (500)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~  346 (500)
                      ++.....+....                                                              ..    
T Consensus       157 ~~~~~g~~~~~~--------------------------------------------------------------~~----  170 (331)
T 3u4y_A          157 KIDADGVLFDTG--------------------------------------------------------------QE----  170 (331)
T ss_dssp             EECTTCCEEEEE--------------------------------------------------------------EE----
T ss_pred             EECCCCcEeecC--------------------------------------------------------------Cc----
Confidence            976432111000                                                              00    


Q ss_pred             CCCCCCceeeecccCcEEEEEECCCCCEEE-EEeCCCcEEEEeCCCCce---EEEEeCCcccEEEEEeeeeeeecCCCCc
Q 010816          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVA-SASFDKSIKLWNGTTGKF---VAVFRGHVGPVYQIRFELIYCFRYPSNF  422 (500)
Q Consensus       347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~la-sgs~Dg~i~lwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~  422 (500)
                               ..........++|+|+|++++ ++..++.|++||+.+++.   +..+..+..                   
T Consensus       171 ---------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~-------------------  222 (331)
T 3u4y_A          171 ---------FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL-------------------  222 (331)
T ss_dssp             ---------EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC-------------------
T ss_pred             ---------cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC-------------------
Confidence                     001122367899999998665 445689999999998887   555443211                   


Q ss_pred             eeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECCCccc--cccccCc----cc---CEEEEEEcCCCCEEEEEeC-
Q 010816          423 YCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKL--KQDLPGH----AD---EVFAVDWSPDGEKVASGGK-  491 (500)
Q Consensus       423 ~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~--~~~~~~h----~~---~V~~l~~s~dg~~l~s~~~-  491 (500)
                               ...++|+|+|++|+.++ .++.|.+||+.+++.  +..+..+    ..   ....++|+|||++|+.++. 
T Consensus       223 ---------~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  293 (331)
T 3u4y_A          223 ---------PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI  293 (331)
T ss_dssp             ---------CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred             ---------CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence                     12237899999777665 578899999998776  2222211    11   2256899999999866554 


Q ss_pred             CCcEEEec
Q 010816          492 DRVLKLWM  499 (500)
Q Consensus       492 D~~v~iW~  499 (500)
                      ++.|++|+
T Consensus       294 ~~~v~v~d  301 (331)
T 3u4y_A          294 SRELKVFT  301 (331)
T ss_dssp             TTEEEEEE
T ss_pred             CCcEEEEE
Confidence            57999997

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=2.5e-22  Score=209.20  Aligned_cols=280  Identities=12%  Similarity=0.123  Sum_probs=196.4

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----CC
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-----GK  183 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~-----~~  183 (500)
                      ..|.+++|+|| +.++.+ .|+.|++||+.+++.. .+..+...+.+++|+|||++|+++ .|+.|.+||+.+     ++
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            56999999999 666555 3599999999887654 445567788999999999999985 689999999988     76


Q ss_pred             cccccccCccc-------------ceEEEEeeeeecCCCCceEEEEe---------------------------------
Q 010816          184 PSGNPLSGHKK-------------WITGISWEPVHLNAPCRRFVSAS---------------------------------  217 (500)
Q Consensus       184 ~~~~~~~~~~~-------------~v~~~~~~~~~~~~~~~~~~s~s---------------------------------  217 (500)
                      .......++..             .+.++.|+|     +++++++++                                 
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-----Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~  232 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-----KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS  232 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-----TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECC-----CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence            54322222221             146788876     567788877                                 


Q ss_pred             CCCcEEEEECCCCeEEEEec--CccccEEEEEeCCCCe-EEEEeCCC-----eEEEEeCCCCeeEEEee--cCCce---E
Q 010816          218 KDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGV-IYTGSQDC-----TIKVWETTQGKLIRELK--GHGHW---V  284 (500)
Q Consensus       218 ~dg~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~-l~t~~~dg-----~i~lwd~~~~~~~~~~~--~~~~~---v  284 (500)
                      .+..|++||+.+++......  .|...+.++.|++|+. |++++.|+     .|++||+.+++....+.  .+..+   +
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            44689999999887655442  5677899999999985 77766665     89999999884333332  11111   1


Q ss_pred             EEEEecC--cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCc
Q 010816          285 NSLALST--EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL  362 (500)
Q Consensus       285 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~  362 (500)
                      ..+.+++  +                                    +..+++++.|+.+++|+..........+..|...
T Consensus       313 ~~~~~sp~~d------------------------------------g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~  356 (706)
T 2z3z_A          313 HPLTFLPGSN------------------------------------NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWE  356 (706)
T ss_dssp             SCCEECTTCS------------------------------------SEEEEEECTTSSCEEEEEETTSCEEEECCCSSSC
T ss_pred             CCceeecCCC------------------------------------CEEEEEEccCCccEEEEEECCCCEEEecCCCCeE
Confidence            3334443  2                                    3467788889999999765333444556677777


Q ss_pred             EEE-EEECCCCCEEEEEeC-CC----cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816          363 VNH-VYFSPDGQWVASASF-DK----SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS  436 (500)
Q Consensus       363 v~~-l~~sp~g~~lasgs~-Dg----~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (500)
                      +.. ++|+|+|+.|+.++. ++    .|+.||..+++. ..+. |...+..+                           +
T Consensus       357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~-~~~~~~~~---------------------------~  407 (706)
T 2z3z_A          357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT-PESGMHRT---------------------------Q  407 (706)
T ss_dssp             EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC-CSSSEEEE---------------------------E
T ss_pred             EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc-CCCceEEE---------------------------E
Confidence            876 799999988766554 44    677778777653 2222 33444433                           6


Q ss_pred             EcCCCCEEEEEECC----CcEEEEECCCcc
Q 010816          437 WSADSRLLLSGSKD----STLKVWDIRTQK  462 (500)
Q Consensus       437 ~s~~~~~l~s~s~d----~~v~iwd~~~~~  462 (500)
                      |+|+|++++.+..+    +.|++||+.+++
T Consensus       408 ~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          408 LSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             ECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            79999988876543    569999998876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=6.2e-22  Score=187.18  Aligned_cols=291  Identities=12%  Similarity=0.136  Sum_probs=185.9

Q ss_pred             EEEEeCCCcEEEEeCCC-Cc-eeEEecCCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEeCC--CCCccc-ccccCcccce
Q 010816          123 LASGSGDTTVRLWDLNT-QT-PMFKCTGHKNWVLCIAWSADGKHLVSGSKA-GELQCWDPQ--TGKPSG-NPLSGHKKWI  196 (500)
Q Consensus       123 lat~~~d~~i~iwd~~~-~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-~~i~~wd~~--~~~~~~-~~~~~~~~~v  196 (500)
                      +++++.|+.|++||+.. +. .......|...+.+++|+|+|++|++++.+ +.|.+|++.  +++... ..+..+. .+
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~   86 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SL   86 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CC
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CC
Confidence            44457899999999963 32 222233577789999999999999888876 999999987  554221 1122222 56


Q ss_pred             EEEEeeeeecCCCCceEEEEe-CCCcEEEEEC---CCCeEEEEecCccccEEEEEeCCCC-eEEEEe-CCCeEEEEeCCC
Q 010816          197 TGISWEPVHLNAPCRRFVSAS-KDGDARIWDV---SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDCTIKVWETTQ  270 (500)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~---~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~-~dg~i~lwd~~~  270 (500)
                      ..+.|+|     +++.+++++ .++.|++||+   ...+.+..+..+ ..+.+++|++++ .+++++ .++.|++||+.+
T Consensus        87 ~~~~~s~-----dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A           87 THISTDH-----QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             SEEEECT-----TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cEEEEcC-----CCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence            7777766     345555554 5889999999   444455555444 357788999987 466666 899999999987


Q ss_pred             -CeeEE----Eeec-CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCCeEEE
Q 010816          271 -GKLIR----ELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFL  343 (500)
Q Consensus       271 -~~~~~----~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~~v~~  343 (500)
                       ++...    .+.. ....+..++++++                                    +..+ +++..++.+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pd------------------------------------g~~l~~~~~~~~~i~~  204 (343)
T 1ri6_A          161 DGHLVAQDPAEVTTVEGAGPRHMVFHPN------------------------------------EQYAYCVNELNSSVDV  204 (343)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTT------------------------------------SSEEEEEETTTTEEEE
T ss_pred             CCceeeecccccccCCCCCcceEEECCC------------------------------------CCEEEEEeCCCCEEEE
Confidence             65432    2222 2335556666654                                    2334 45568899999


Q ss_pred             EcCCCCCCCc---eeee----c--ccCcEEEEEECCCCCEEE-EEeCCCcEEEEeCC--CC--ceEEEEeCCcccEEEEE
Q 010816          344 WEPAVSKQPK---TRMT----G--HQQLVNHVYFSPDGQWVA-SASFDKSIKLWNGT--TG--KFVAVFRGHVGPVYQIR  409 (500)
Q Consensus       344 wd~~~~~~~~---~~~~----~--h~~~v~~l~~sp~g~~la-sgs~Dg~i~lwd~~--~~--~~~~~~~~h~~~v~~~~  409 (500)
                      |++.......   ....    +  ....+..++|+|+|++|+ ++..|+.|++||+.  ++  +.+..+..+..      
T Consensus       205 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~------  278 (343)
T 1ri6_A          205 WELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ------  278 (343)
T ss_dssp             EESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS------
T ss_pred             EEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc------
Confidence            9985322111   1111    1  123577899999998777 45579999999987  33  22322322211      


Q ss_pred             eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEE--CCCccc--cccccCcccCEEEEEEcCCCC
Q 010816          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWD--IRTQKL--KQDLPGHADEVFAVDWSPDGE  484 (500)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd--~~~~~~--~~~~~~h~~~V~~l~~s~dg~  484 (500)
                                            ...++|+|+|++|++++ .|+.|.+|+  ..+++.  +..+... ....+++|.|+.+
T Consensus       279 ----------------------~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~  335 (343)
T 1ri6_A          279 ----------------------PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEG  335 (343)
T ss_dssp             ----------------------CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC-
T ss_pred             ----------------------cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccC
Confidence                                  22347899999888887 689999995  445533  3333332 3345777777654


Q ss_pred             E
Q 010816          485 K  485 (500)
Q Consensus       485 ~  485 (500)
                      .
T Consensus       336 ~  336 (343)
T 1ri6_A          336 G  336 (343)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=2.6e-22  Score=204.19  Aligned_cols=275  Identities=12%  Similarity=0.078  Sum_probs=190.5

Q ss_pred             cccEEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCceeEEecCCC-CCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCC-
Q 010816          108 TEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSK---AGELQCWDPQT-  181 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~-d~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s~~~---d~~i~~wd~~~-  181 (500)
                      ..+|.+++|+|||++||+++. ||+++||++.++.. ..+..|. ..+..++|+|| +++++++.   +...++|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            457999999999999999887 99999999866554 4455555 68999999999 77777765   44556654432 


Q ss_pred             --CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC
Q 010816          182 --GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (500)
Q Consensus       182 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~  259 (500)
                        +...  .+                                              ...+...+.++.+++++.+++.+.
T Consensus        99 ~~g~~~--~l----------------------------------------------~~~~~~~~~~~s~dg~~~~~~s~~  130 (582)
T 3o4h_A           99 RPGEEQ--RL----------------------------------------------EAVKPMRILSGVDTGEAVVFTGAT  130 (582)
T ss_dssp             STTCCE--EC----------------------------------------------TTSCSBEEEEEEECSSCEEEEEEC
T ss_pred             CCCccc--cc----------------------------------------------cCCCCceeeeeCCCCCeEEEEecC
Confidence              1100  00                                              000111123334444445555555


Q ss_pred             CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC-
Q 010816          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-  338 (500)
Q Consensus       260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d-  338 (500)
                      ++.+.+||+.+++..+....+.   .+++++|+                                    +..++.++.+ 
T Consensus       131 ~~~~~l~d~~~g~~~~l~~~~~---~~~~~spD------------------------------------G~~la~~~~~~  171 (582)
T 3o4h_A          131 EDRVALYALDGGGLRELARLPG---FGFVSDIR------------------------------------GDLIAGLGFFG  171 (582)
T ss_dssp             SSCEEEEEEETTEEEEEEEESS---CEEEEEEE------------------------------------TTEEEEEEEEE
T ss_pred             CCCceEEEccCCcEEEeecCCC---ceEEECCC------------------------------------CCEEEEEEEcC
Confidence            5556699998887655444333   56666665                                    3467766665 


Q ss_pred             ---CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCceEEEEeCCcccEEEEEeeee
Q 010816          339 ---FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELI  413 (500)
Q Consensus       339 ---~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~  413 (500)
                         +.|++||+....  ...+.+|...+..++|||||++|+++..|+  .|++||+.+++.. .+.+|...+..+.    
T Consensus       172 ~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~----  244 (582)
T 3o4h_A          172 GGRVSLFTSNLSSGG--LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR----  244 (582)
T ss_dssp             TTEEEEEEEETTTCC--CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC----
T ss_pred             CCCeEEEEEcCCCCC--ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh----
Confidence               779999976543  346778888899999999999999888898  8999999998877 6666654432210    


Q ss_pred             eeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816          414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR  493 (500)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~  493 (500)
                                     ........|+|||.++++++.|+.++||++  ++....   +.+.|.+++|+ ||+.+++++.+.
T Consensus       245 ---------------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          245 ---------------PTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             ---------------CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             ---------------hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEcCCC
Confidence                           000111238999999999999999999999  555442   33568899999 999999988875


Q ss_pred             c---EEEec
Q 010816          494 V---LKLWM  499 (500)
Q Consensus       494 ~---v~iW~  499 (500)
                      +   +++|+
T Consensus       304 ~p~~l~~~d  312 (582)
T 3o4h_A          304 TPPRIVSLP  312 (582)
T ss_dssp             EEEEEEEET
T ss_pred             CCCeEEEEc
Confidence            4   55554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=1.1e-21  Score=185.06  Aligned_cols=285  Identities=11%  Similarity=0.078  Sum_probs=194.0

Q ss_pred             CeEEEEeCCCcEEEEeCCCCceeEEecCCC-C-CEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCcccccccCc----c
Q 010816          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHK-N-WVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGH----K  193 (500)
Q Consensus       121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~-~-~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~----~  193 (500)
                      ++|++++.++.|++||+.+++.+..+.... . .+.+++|+|+|+++ ++++.++.|.+||+.+++.......++    .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            468999999999999999988776665222 2 47889999999866 456668999999999887543222121    2


Q ss_pred             cceEEEEeeeeecCCCCceEEEEe------------CCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCC
Q 010816          194 KWITGISWEPVHLNAPCRRFVSAS------------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD  260 (500)
Q Consensus       194 ~~v~~~~~~~~~~~~~~~~~~s~s------------~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~d  260 (500)
                      ..+.++.|+|     +++++++++            .++.|++||+.+++.+..+.. ...+.++.|++++. ++++  +
T Consensus        82 ~~~~~~~~s~-----dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~  153 (337)
T 1pby_B           82 KSLFGAALSP-----DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--G  153 (337)
T ss_dssp             ECTTCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--S
T ss_pred             ccccceEECC-----CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--C
Confidence            2455666665     455676665            579999999999887766654 33467788999885 6665  6


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE----EEEee
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER----LVSGS  336 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~s  336 (500)
                      +.|.+||+.+++....+..+... ..+.++++......                          .......    .....
T Consensus       154 ~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~--------------------------~~~~~~~~~~~~~~~~  206 (337)
T 1pby_B          154 RDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWN--------------------------QHESSGVMATPFYTAR  206 (337)
T ss_dssp             SSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCC--------------------------CCTTTTEEEEEEEEEB
T ss_pred             CeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEee--------------------------eccCCCceeeeeeccc
Confidence            89999999998877666533210 01122332110000                          0000011    11111


Q ss_pred             CCC----------eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816          337 DDF----------TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (500)
Q Consensus       337 ~d~----------~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~  406 (500)
                      .++          .|.+||+.........+..+...+.+++|+|+|++|+++  ++.|++||+.+++.+..+..+.. +.
T Consensus       207 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~-~~  283 (337)
T 1pby_B          207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHS-YY  283 (337)
T ss_dssp             TTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSC-CC
T ss_pred             cccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCc-ee
Confidence            122          588999876543333345566778899999999999888  79999999999988766653321 12


Q ss_pred             EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCc
Q 010816          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH  470 (500)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h  470 (500)
                                                 .++|+|+|++|++++.++.|++||+.+++.+..++.+
T Consensus       284 ---------------------------~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          284 ---------------------------SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             ---------------------------EEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             ---------------------------eEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence                                       2367999999999999999999999998887766544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=4.9e-22  Score=207.47  Aligned_cols=311  Identities=13%  Similarity=0.082  Sum_probs=207.6

Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCC---CEEEEEEcCCCCEEEEEeC---------CCeEEEEeCC
Q 010816          113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSADGKHLVSGSK---------AGELQCWDPQ  180 (500)
Q Consensus       113 ~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~---~v~~v~~s~~~~~l~s~~~---------d~~i~~wd~~  180 (500)
                      +++|+|||+++++ +.|++|++||+.++++...+.+|..   .+.+++|||||++|++++.         |+.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6799999965554 4699999999999887766655543   4899999999999998876         7899999999


Q ss_pred             CCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-cCccccE---------------
Q 010816          181 TGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAV---------------  243 (500)
Q Consensus       181 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-~~h~~~v---------------  243 (500)
                      +++... ..+   ...+..+.|+|     +++.++.++ ++.|++||+.++++.... .++...|               
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SP-----DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~  169 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSP-----VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA  169 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECS-----STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred             CCccccceec---CcccccceECC-----CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence            886521 112   24577888887     556777775 789999999887765433 2333323               


Q ss_pred             --EEEEeCCCC-eEEEEeCCC----------------------------------eEEEEeCCCCeeE---E-----Eee
Q 010816          244 --TCVKWGGDG-VIYTGSQDC----------------------------------TIKVWETTQGKLI---R-----ELK  278 (500)
Q Consensus       244 --~~~~~~~~~-~l~t~~~dg----------------------------------~i~lwd~~~~~~~---~-----~~~  278 (500)
                        .++.|+||| .|++++.|.                                  .|++||+.+++..   .     .+.
T Consensus       170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~  249 (719)
T 1z68_A          170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA  249 (719)
T ss_dssp             SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred             CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence              479999998 466666542                                  7889999887642   1     123


Q ss_pred             cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee--CC--CeEEEEc----CCCCC
Q 010816          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS--DD--FTMFLWE----PAVSK  350 (500)
Q Consensus       279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s--~d--~~v~~wd----~~~~~  350 (500)
                      .+...+..++++|+..                                    .+++..  .+  ..|.+||    .....
T Consensus       250 ~~~~~~~~~~~SpD~~------------------------------------~~~~~~~~~~~~~~l~~~d~~~~~~~g~  293 (719)
T 1z68_A          250 SSDYYFSWLTWVTDER------------------------------------VCLQWLKRVQNVSVLSICDFREDWQTWD  293 (719)
T ss_dssp             TSCEEEEEEEESSSSE------------------------------------EEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred             CCcceEEEeEEeCCCe------------------------------------EEEEEeccccCeEEEEEEcccCCCCCCc
Confidence            5677788888887632                                    233322  22  3478888    54433


Q ss_pred             CCceee----ecccCcEE-----EEEECCCCCEEEE--EeCCC--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816          351 QPKTRM----TGHQQLVN-----HVYFSPDGQWVAS--ASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       351 ~~~~~~----~~h~~~v~-----~l~~sp~g~~las--gs~Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                      .. ..+    .+|...+.     .+.|+|||+.|+.  +..+|  .|++||+.+++ ...+..+...+..+         
T Consensus       294 ~~-~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~---------  362 (719)
T 1z68_A          294 CP-KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINI---------  362 (719)
T ss_dssp             CC-GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEE---------
T ss_pred             eE-EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEE---------
Confidence            22 222    46666666     7899999986554  44555  57778887766 33444444444333         


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECC-----CcEEEEECCC--ccc-ccc----ccCcccCEEEEEEcCCCCE
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-----STLKVWDIRT--QKL-KQD----LPGHADEVFAVDWSPDGEK  485 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d-----~~v~iwd~~~--~~~-~~~----~~~h~~~V~~l~~s~dg~~  485 (500)
                                        .++ +++.|+..+.+     +.+++|.+..  +.. ...    +.+|...+..+.|+|||++
T Consensus       363 ------------------~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~  423 (719)
T 1z68_A          363 ------------------FRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKY  423 (719)
T ss_dssp             ------------------EEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSS
T ss_pred             ------------------EEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCE
Confidence                              234 67767666654     7889998653  311 122    3346677889999999998


Q ss_pred             EEE-EeCC--CcEEEec
Q 010816          486 VAS-GGKD--RVLKLWM  499 (500)
Q Consensus       486 l~s-~~~D--~~v~iW~  499 (500)
                      ++. ++.+  ..+++|+
T Consensus       424 l~~~~s~~~~p~~~l~d  440 (719)
T 1z68_A          424 YALVCYGPGIPISTLHD  440 (719)
T ss_dssp             EEEEECCBSSCEEEEEC
T ss_pred             EEEEcCCCCCCeEEEEE
Confidence            874 4433  3455654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=8e-21  Score=179.52  Aligned_cols=271  Identities=13%  Similarity=0.200  Sum_probs=172.4

Q ss_pred             EEEEEeCCCeEEEEeCC-CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCC-CcEEEEECC--CCe--EEEEec
Q 010816          164 HLVSGSKAGELQCWDPQ-TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-GDARIWDVS--LRK--CVICLS  237 (500)
Q Consensus       164 ~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-g~v~iwd~~--~~~--~~~~~~  237 (500)
                      ++++++.|+.|++||+. +++........+...+.+++|+|     +++.+++++.+ +.|++|++.  +++  .+..+.
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   81 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-----DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA   81 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-----TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC-----CCCEEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence            34455789999999985 33221111233555677788876     44567777776 999999997  444  334444


Q ss_pred             CccccEEEEEeCCCCe-EEEEe-CCCeEEEEeCCCC---eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816          238 GHTLAVTCVKWGGDGV-IYTGS-QDCTIKVWETTQG---KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (500)
Q Consensus       238 ~h~~~v~~~~~~~~~~-l~t~~-~dg~i~lwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (500)
                      .+. .+.+++|++++. +++++ .++.|++||+.++   +....+..+. .+.+++++++                    
T Consensus        82 ~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~d--------------------  139 (343)
T 1ri6_A           82 LPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPD--------------------  139 (343)
T ss_dssp             CSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTT--------------------
T ss_pred             cCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCC--------------------
Confidence            443 678899999884 55554 5889999998433   3333333222 3444555543                    


Q ss_pred             HHHHHHHhhhhhcCCCCcEEEEee-CCCeEEEEcCCCCCCCce----eeec-ccCcEEEEEECCCCCEEEEE-eCCCcEE
Q 010816          313 MKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKT----RMTG-HQQLVNHVYFSPDGQWVASA-SFDKSIK  385 (500)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~~~~~~----~~~~-h~~~v~~l~~sp~g~~lasg-s~Dg~i~  385 (500)
                                      +..+++++ .++.|++||+........    .... ....+.+++|+|+|++|+++ ..++.|+
T Consensus       140 ----------------g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~  203 (343)
T 1ri6_A          140 ----------------NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVD  203 (343)
T ss_dssp             ----------------SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             ----------------CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEE
Confidence                            23455555 899999999865222211    1222 23468899999999977555 4789999


Q ss_pred             EEeCCC--CceE--EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCCcEEEEECC-
Q 010816          386 LWNGTT--GKFV--AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDSTLKVWDIR-  459 (500)
Q Consensus       386 lwd~~~--~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd~~-  459 (500)
                      +|++..  ++..  ..+...                 +..+    ........++|+|+|++|+++ ..|+.|++||+. 
T Consensus       204 ~~~~~~~~g~~~~~~~~~~~-----------------~~~~----~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          204 VWELKDPHGNIECVQTLDMM-----------------PENF----SDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             EEESSCTTSCCEEEEEEECS-----------------CTTC----CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEecCCCCcEEEEeecccc-----------------Cccc----cccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence            999953  4331  111100                 0000    000112235789999888754 478999999998 


Q ss_pred             -C--ccccccccCcccCEEEEEEcCCCCEEEEEe-CCCcEEEec
Q 010816          460 -T--QKLKQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLKLWM  499 (500)
Q Consensus       460 -~--~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~-~D~~v~iW~  499 (500)
                       +  .+.+..+..+.. +.+++|+|+|++|++++ .|+.|.+|+
T Consensus       263 ~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          263 DGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             TSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             CCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEE
Confidence             2  334444444444 88999999999998887 689999994

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=5.9e-22  Score=207.05  Aligned_cols=306  Identities=12%  Similarity=0.082  Sum_probs=192.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCccc---ceEEEEeeeeecCCCCceEEEEeCC---------
Q 010816          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK---WITGISWEPVHLNAPCRRFVSASKD---------  219 (500)
Q Consensus       152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~s~s~d---------  219 (500)
                      .+.+++|+|||+++++ +.||+|++||+.+++... .+.+|..   .+.+++|+|     +++++++++.+         
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~-~~~~~~~~~~~v~~~~~Sp-----Dg~~l~~~~~~~~~~~~~~~   90 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV-LIEGKKIESLRAIRYEISP-----DREYALFSYNVEPIYQHSYT   90 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE-EECTTTTTTTTCSEEEECT-----TSSEEEEEESCCCCSSSCCC
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE-EeccccccccccceEEECC-----CCCEEEEEecCccceeecce
Confidence            3678899999997776 789999999999887543 3444543   488888877     56788888764         


Q ss_pred             CcEEEEECCCCeEEE--EecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceE------------
Q 010816          220 GDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV------------  284 (500)
Q Consensus       220 g~v~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v------------  284 (500)
                      +.+++||+.++++..  ...+|...+.+++|+||| .|+.++. +.|++||+.+++..+....+...+            
T Consensus        91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence            778899999887622  223455558889999998 4666654 899999999887766555433322            


Q ss_pred             ------EEEEecCcce-eeeccccCCCCC-CCCHHHHHHHHHHhhhhhcCCCCcEEEEe------eCCCeEEEEcCCCCC
Q 010816          285 ------NSLALSTEYA-LRTGAFDHTGKQ-YSSPEEMKKAALERYNKIKGNAPERLVSG------SDDFTMFLWEPAVSK  350 (500)
Q Consensus       285 ------~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------s~d~~v~~wd~~~~~  350 (500)
                            .+++++|+.. +.....+..... +....         .. ....+...-+.-      ..+..|++||+....
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~  239 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT---------YT-GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT  239 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC---------CS-SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEeec---------cC-CcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence                  6788888764 222222211000 00000         00 000000000000      112379999986544


Q ss_pred             CCceeeec------ccCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCCCceEEEEeCC-cccEEEEEeeeeeeecCC
Q 010816          351 QPKTRMTG------HQQLVNHVYFSPDGQWVASASF----DKSIKLWNGTTGKFVAVFRGH-VGPVYQIRFELIYCFRYP  419 (500)
Q Consensus       351 ~~~~~~~~------h~~~v~~l~~sp~g~~lasgs~----Dg~i~lwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~  419 (500)
                      . ...+..      +...+..++|||||++|++.+.    +..|++||+.++++...+..+ .+.+..            
T Consensus       240 ~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~------------  306 (723)
T 1xfd_A          240 H-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHR------------  306 (723)
T ss_dssp             C-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCC------------
T ss_pred             e-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEec------------
Confidence            2 123333      3567899999999999977654    357999999999876655432 221100            


Q ss_pred             CCceeeeeccccceeeEEcCCCCEEEE--EECCC------cEEEEE-CCCcc--ccccccCcccCEEE-EEEcCCCCEEE
Q 010816          420 SNFYCVVDMSCCMSLYSWSADSRLLLS--GSKDS------TLKVWD-IRTQK--LKQDLPGHADEVFA-VDWSPDGEKVA  487 (500)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s--~s~d~------~v~iwd-~~~~~--~~~~~~~h~~~V~~-l~~s~dg~~l~  487 (500)
                                 ....++|+|||+.|+.  +..|+      .|.+|| ..+++  ....+..+...+.. ++|+|||++|+
T Consensus       307 -----------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~  375 (723)
T 1xfd_A          307 -----------QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIY  375 (723)
T ss_dssp             -----------CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred             -----------cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEE
Confidence                       0012378999997775  45677      566777 34444  14455543344554 69999999998


Q ss_pred             EEeCC---CcEEEec
Q 010816          488 SGGKD---RVLKLWM  499 (500)
Q Consensus       488 s~~~D---~~v~iW~  499 (500)
                      ..+.+   ++++||.
T Consensus       376 ~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          376 FLSTEDLPRRRQLYS  390 (723)
T ss_dssp             EEESSSCTTCCEEEE
T ss_pred             EEEcCCCCcceEEEE
Confidence            76655   7888885

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=1.5e-20  Score=178.09  Aligned_cols=285  Identities=12%  Similarity=0.052  Sum_probs=188.2

Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCC-CCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCccccccc
Q 010816          113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLS  190 (500)
Q Consensus       113 ~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~  190 (500)
                      .++++++++++++++.+++|++||+.+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.......
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            35678889999999999999999999988776665443 2578899999998664 556789999999988865432211


Q ss_pred             Cc-----ccceEEEEeeeeecCCCCceEEEEeCC------------CcEEEEECCCCe---EEEEecCccccEEEEEeCC
Q 010816          191 GH-----KKWITGISWEPVHLNAPCRRFVSASKD------------GDARIWDVSLRK---CVICLSGHTLAVTCVKWGG  250 (500)
Q Consensus       191 ~~-----~~~v~~~~~~~~~~~~~~~~~~s~s~d------------g~v~iwd~~~~~---~~~~~~~h~~~v~~~~~~~  250 (500)
                      .+     ...+.++.|+|     +++++++++.+            +.|.+||+.+++   .+..+..+ ..+.+++|++
T Consensus        84 ~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~  157 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISP-----DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAAD  157 (349)
T ss_dssp             CCSTTEEEECSSCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECT
T ss_pred             ccccccccccccceEECC-----CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECC
Confidence            22     22355666665     55677777755            899999998743   23333333 3577889999


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCc------------------------eEEEEEecCcceeeeccccCCCCC
Q 010816          251 DGVIYTGSQDCTIKVWETTQGKLIRELKGHGH------------------------WVNSLALSTEYALRTGAFDHTGKQ  306 (500)
Q Consensus       251 ~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~~~~~~~~~~~~  306 (500)
                      ++.+++++.  .|.+||..+++....+..+..                        ....+++.++...     +..   
T Consensus       158 dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~---  227 (349)
T 1jmx_B          158 DGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ-----DPA---  227 (349)
T ss_dssp             TSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------------C---
T ss_pred             CCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC-----Ccc---
Confidence            988776544  499999999887776543210                        0011111110000     000   


Q ss_pred             CCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEE
Q 010816          307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIK  385 (500)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~  385 (500)
                                       ........+.....++.+.+|+.          ..+...+..++|+| +|++++++  ++.|+
T Consensus       228 -----------------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~  278 (349)
T 1jmx_B          228 -----------------TADLLYGYLSVDLKTGKTHTQEF----------ADLTELYFTGLRSPKDPNQIYGV--LNRLA  278 (349)
T ss_dssp             -----------------CCEEEEEEEEEETTTCCEEEEEE----------EECSSCEEEEEECSSCTTEEEEE--ESEEE
T ss_pred             -----------------ccccceeEEEEeccCCcEEeccc----------ccCCCcceeeEecCCCCCEEEEE--cCeEE
Confidence                             00000001112233444555543          23455688999999 99999888  88999


Q ss_pred             EEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc
Q 010816          386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ  465 (500)
Q Consensus       386 lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~  465 (500)
                      +||+.+++.+..+..... +..                           ++|+|+|++|++++.++.|++||+++++.+.
T Consensus       279 ~~d~~~~~~~~~~~~~~~-~~~---------------------------~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          279 KYDLKQRKLIKAANLDHT-YYC---------------------------VAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             EEETTTTEEEEEEECSSC-CCE---------------------------EEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             EEECccCeEEEEEcCCCC-ccc---------------------------eEECCCCCEEEEecCCCeEEEEeccccceee
Confidence            999999988776653221 122                           3679999988888889999999999888776


Q ss_pred             cccCc
Q 010816          466 DLPGH  470 (500)
Q Consensus       466 ~~~~h  470 (500)
                      .++..
T Consensus       331 ~~~~~  335 (349)
T 1jmx_B          331 NIKLP  335 (349)
T ss_dssp             EEECS
T ss_pred             eeecC
Confidence            65433

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=8.4e-21  Score=175.14  Aligned_cols=234  Identities=19%  Similarity=0.222  Sum_probs=164.6

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-CceeEEecCC-CCCEEEEEEcCCCCEEEEEe--CCCeEEEE-
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGH-KNWVLCIAWSADGKHLVSGS--KAGELQCW-  177 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-~~~~~~~~~h-~~~v~~v~~s~~~~~l~s~~--~d~~i~~w-  177 (500)
                      .+.+|.+.|.+++|+|+|++|++++ ++.|++||+.+ ++......+| ...+.+++|+|+|++|++++  .++..++| 
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~  114 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL  114 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence            3456788999999999999999987 78999999998 7766555555 36789999999999999998  33455555 


Q ss_pred             -eCCCCCcccccccCcccceEEEEeeeeecCCCCceEE-EEeCCCcEEEEECCC-CeEEEEecCccccEEEEEeCCCCe-
Q 010816          178 -DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV-SASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDGV-  253 (500)
Q Consensus       178 -d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-s~s~dg~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-  253 (500)
                       +..+++..  .+..+. .+..+.|+|     +++.++ +++.|+.+++|++.. ......+..|...+.++.|++++. 
T Consensus       115 ~~~~~~~~~--~~~~~~-~~~~~~~sp-----dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  186 (297)
T 2ojh_A          115 LPSTGGTPR--LMTKNL-PSYWHGWSP-----DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRW  186 (297)
T ss_dssp             EETTCCCCE--ECCSSS-SEEEEEECT-----TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSE
T ss_pred             EECCCCceE--EeecCC-CccceEECC-----CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCE
Confidence             44554422  233332 377778876     345555 788899999998642 233455667778899999999874 


Q ss_pred             EEEEe-CCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816          254 IYTGS-QDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (500)
Q Consensus       254 l~t~~-~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (500)
                      ++.++ .++.+++|++. .+...                                                         
T Consensus       187 l~~~~~~~~~~~i~~~~~~~~~~---------------------------------------------------------  209 (297)
T 2ojh_A          187 IYFNSSRTGQMQIWRVRVDGSSV---------------------------------------------------------  209 (297)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCE---------------------------------------------------------
T ss_pred             EEEEecCCCCccEEEECCCCCCc---------------------------------------------------------
Confidence            44444 58888888753 11111                                                         


Q ss_pred             EEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC-----------CcEEEEeCCCCceEE--EE
Q 010816          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-----------KSIKLWNGTTGKFVA--VF  398 (500)
Q Consensus       332 ~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D-----------g~i~lwd~~~~~~~~--~~  398 (500)
                                            ..+..|...+.+++|+|+|++|++++.+           +.|++||+.+++...  .+
T Consensus       210 ----------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  267 (297)
T 2ojh_A          210 ----------------------ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL  267 (297)
T ss_dssp             ----------------------EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred             ----------------------EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence                                  1122334457789999999999988876           569999998886533  23


Q ss_pred             eCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC
Q 010816          399 RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS  451 (500)
Q Consensus       399 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~  451 (500)
                      .+|...+..                           ++|+|+|++|++++.|.
T Consensus       268 ~~~~~~~~~---------------------------~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          268 FGGQGTMNS---------------------------PNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EESTTTSCS---------------------------CCBCTTSSEEEEEEECC
T ss_pred             CCCCccccc---------------------------ceECCCCCEEEEEEecc
Confidence            344443322                           36899999999887653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=1.6e-19  Score=173.95  Aligned_cols=296  Identities=13%  Similarity=0.117  Sum_probs=194.8

Q ss_pred             EEeCCCCceeEEecCCCCCEEE-----EEEcCCCCEEEEEeC-CC--eEEEEeCCCCCcccccccCcccceEEEEeeeee
Q 010816          134 LWDLNTQTPMFKCTGHKNWVLC-----IAWSADGKHLVSGSK-AG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH  205 (500)
Q Consensus       134 iwd~~~~~~~~~~~~h~~~v~~-----v~~s~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~  205 (500)
                      .+|..++..+..+..|......     .+|+|||++|+.++. ++  .|.+||+.+++... ...++...+.++.|+|  
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~sp--   90 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-LTEGRGDNTFGGFLSP--   90 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-CCCSSCBCSSSCEECT--
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-eeeCCCCCccceEEcC--
Confidence            3466777777888877766666     889999999998887 66  48888988876543 3344544444566766  


Q ss_pred             cCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEE--eCCCCeEEEE-----------------------eCC
Q 010816          206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK--WGGDGVIYTG-----------------------SQD  260 (500)
Q Consensus       206 ~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~l~t~-----------------------~~d  260 (500)
                         ++++++.++.++.+++||+.+++.......+...+....  +++++.++.+                       ..+
T Consensus        91 ---dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (388)
T 3pe7_A           91 ---DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC  167 (388)
T ss_dssp             ---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred             ---CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence               567899999999999999999887666665555554444  3777755442                       245


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecC-cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC--
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--  337 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~--  337 (500)
                      ..|.+||+.+++... +..+...+..+.++| +..                                    .++..+.  
T Consensus       168 ~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~------------------------------------~l~~~~~~~  210 (388)
T 3pe7_A          168 CRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDS------------------------------------TVAFCHEGP  210 (388)
T ss_dssp             EEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEE------------------------------------EEEEEECSC
T ss_pred             ceEEEEECCCCceEE-eecCCccccccEECCCCCC------------------------------------EEEEEEecC
Confidence            789999999886543 334555677888887 632                                    3333332  


Q ss_pred             ----CCeEEEEcCCCCCCCceeeeccc--CcEEEEEECCCCCEEEEEeCC-C----cEEEEeCCCCceEE--EEeCCccc
Q 010816          338 ----DFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFD-K----SIKLWNGTTGKFVA--VFRGHVGP  404 (500)
Q Consensus       338 ----d~~v~~wd~~~~~~~~~~~~~h~--~~v~~l~~sp~g~~lasgs~D-g----~i~lwd~~~~~~~~--~~~~h~~~  404 (500)
                          ...|.++|.....  ...+..+.  ..+..++|+|||+.|+..+.+ +    .|++||+.+++...  .+.++.  
T Consensus       211 ~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~--  286 (388)
T 3pe7_A          211 HDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACS--  286 (388)
T ss_dssp             TTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEE--
T ss_pred             CCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCce--
Confidence                3367777754322  22333333  357789999999977665442 2    39999999987532  222110  


Q ss_pred             EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE---------ECCCcEEEEECCCccccccccCccc---
Q 010816          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG---------SKDSTLKVWDIRTQKLKQDLPGHAD---  472 (500)
Q Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~---------s~d~~v~iwd~~~~~~~~~~~~h~~---  472 (500)
                        ...                    ......+|+|||+.|+..         ..+..|++||+.+++. ..+..|..   
T Consensus       287 --~~~--------------------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~  343 (388)
T 3pe7_A          287 --HLM--------------------SNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWK  343 (388)
T ss_dssp             --EEE--------------------ECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCC
T ss_pred             --eee--------------------ecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCccc
Confidence              000                    000112589999988854         4566899999988765 33444544   


Q ss_pred             --------CEEEEEEcCCCCEEEEEe-CCCcEEEec
Q 010816          473 --------EVFAVDWSPDGEKVASGG-KDRVLKLWM  499 (500)
Q Consensus       473 --------~V~~l~~s~dg~~l~s~~-~D~~v~iW~  499 (500)
                              .+..++|+|||++|+.++ .++...||.
T Consensus       344 ~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~  379 (388)
T 3pe7_A          344 VFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL  379 (388)
T ss_dssp             CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             ccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence                    577889999999988765 477777774

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=5.2e-20  Score=173.46  Aligned_cols=261  Identities=12%  Similarity=0.079  Sum_probs=179.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCcccccccCccc-ceEEEEeeeeecCCCCc-eEEEEeCCCcEEEEECCCCeEEEEecC-c
Q 010816          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK-WITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLSG-H  239 (500)
Q Consensus       163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~-~~~s~s~dg~v~iwd~~~~~~~~~~~~-h  239 (500)
                      ++|++++.++.|.+||+.+++.......++.. .+..+.|+|     +++ .+++++.++.|.+||+.+++.+..+.. +
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~   76 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-----GGRIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-----TSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC-----CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC
Confidence            47899999999999999988765433223322 356777766     333 456677789999999999887765542 2


Q ss_pred             ----cccEEEEEeCCCC-eEEEEe------------CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816          240 ----TLAVTCVKWGGDG-VIYTGS------------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (500)
Q Consensus       240 ----~~~v~~~~~~~~~-~l~t~~------------~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (500)
                          ...+.+++|++++ .+++++            .++.|.+||+.+++.+..+.. ...+..++++++          
T Consensus        77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~d----------  145 (337)
T 1pby_B           77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD----------  145 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT----------
T ss_pred             cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCC----------
Confidence                2245678999988 566665            579999999999887776654 333555666554          


Q ss_pred             CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC-
Q 010816          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-  381 (500)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D-  381 (500)
                                                +..++.+  ++.|++||+..... ...+..+. ....+.|+|+|..++..+.+ 
T Consensus       146 --------------------------g~~l~~~--~~~i~~~d~~~~~~-~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~  195 (337)
T 1pby_B          146 --------------------------GSKLYGL--GRDLHVMDPEAGTL-VEDKPIQS-WEAETYAQPDVLAVWNQHESS  195 (337)
T ss_dssp             --------------------------SSCEEEE--SSSEEEEETTTTEE-EEEECSTT-TTTTTBCCCBCCCCCCCCTTT
T ss_pred             --------------------------CCEEEEe--CCeEEEEECCCCcE-eeeeeccc-cCCCceeCCCccEEeeeccCC
Confidence                                      2335555  67899999765432 22222221 00123789999876554433 


Q ss_pred             C-----------------------cEEEEeCCCCceEE-EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816          382 K-----------------------SIKLWNGTTGKFVA-VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (500)
Q Consensus       382 g-----------------------~i~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (500)
                      +                       .|.+||+.+++... .+..+...+..                           ++|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~---------------------------~~~  248 (337)
T 1pby_B          196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS---------------------------TAV  248 (337)
T ss_dssp             TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEE---------------------------EEE
T ss_pred             CceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceee---------------------------EEE
Confidence            2                       46889998887641 11222222222                           368


Q ss_pred             cCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          438 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       438 s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +|+|++++++  ++.|++||+.+++....+..+ ..+.+++|+|||++|++++.|+.|++|+
T Consensus       249 s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          249 NPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             CTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             CCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            9999999988  799999999998877666543 4578999999999999999999999997

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=5.2e-20  Score=179.27  Aligned_cols=179  Identities=17%  Similarity=0.153  Sum_probs=140.9

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----------ceeE-----EecCCCCCEEEEEEcCCCCEEE----EE
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----------TPMF-----KCTGHKNWVLCIAWSADGKHLV----SG  168 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~----------~~~~-----~~~~h~~~v~~v~~s~~~~~l~----s~  168 (500)
                      ...+..+++++++.++++++.|+ ++||+....          ..+.     ....|...|.+++|+|+|++|+    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            45688999999999999999988 899874210          0111     1123567899999999999999    88


Q ss_pred             eCCCeEEEEeCCCC-----Ccc-----cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC
Q 010816          169 SKAGELQCWDPQTG-----KPS-----GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG  238 (500)
Q Consensus       169 ~~d~~i~~wd~~~~-----~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~  238 (500)
                      +.|+.|++||+.++     +..     ...+.+|...|.+++|+|..    ...|++++.||+|++||++++..+....+
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~----~~~las~s~Dg~v~iwD~~~~~~~~~~~~  190 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV----PSMVAVCLADGSIAVLQVTETVKVCATLP  190 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC----TTEEEEEETTSCEEEEEESSSEEEEEEEC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC----CCEEEEEECCCeEEEEEcCCCcceeeccC
Confidence            99999999998654     111     23466799999999999842    35899999999999999999988777788


Q ss_pred             ccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecC-------CceEEEEEecCc
Q 010816          239 HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH-------GHWVNSLALSTE  292 (500)
Q Consensus       239 h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~-------~~~v~~~~~~~~  292 (500)
                      |...|.+++|++++ .|++|+.||+|++||.+ ++....+..+       ...+.++.++++
T Consensus       191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~  251 (434)
T 2oit_A          191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT  251 (434)
T ss_dssp             GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred             CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC
Confidence            99999999999987 68899999999999998 5555555433       236778877764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=7.3e-19  Score=166.56  Aligned_cols=269  Identities=17%  Similarity=0.167  Sum_probs=169.0

Q ss_pred             CCCcEEEEeCC--CCceeE-EecCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCccc-ccccCcccceEEEE
Q 010816          128 GDTTVRLWDLN--TQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSG-NPLSGHKKWITGIS  200 (500)
Q Consensus       128 ~d~~i~iwd~~--~~~~~~-~~~~h~~~v~~v~~s~~~~~l~s~~~---d~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~  200 (500)
                      .++.|.+|+++  +++... ....+...+..++|+|||+ |++++.   ++.|.+||+.+++... ..+..+...+..++
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            35668888765  343322 2334556778899999999 655554   6899999997665321 11233455566777


Q ss_pred             eeeeecCCCCceEEEEe-CCCcEEEEECCC-C--eEEEEecC---------ccccEEEEEeCCCCeEEE-EeCCCeEEEE
Q 010816          201 WEPVHLNAPCRRFVSAS-KDGDARIWDVSL-R--KCVICLSG---------HTLAVTCVKWGGDGVIYT-GSQDCTIKVW  266 (500)
Q Consensus       201 ~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~-~--~~~~~~~~---------h~~~v~~~~~~~~~~l~t-~~~dg~i~lw  266 (500)
                      |+|     +++.+++++ .++.+++|++.. +  ..+..+..         +...+.+++|++++.+++ ...++.|++|
T Consensus        93 ~sp-----dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~  167 (347)
T 3hfq_A           93 VDE-----ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVY  167 (347)
T ss_dssp             EET-----TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             ECC-----CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEE
Confidence            766     455677666 789999999962 2  22332221         123478899999886554 4457889999


Q ss_pred             eCC-CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816          267 ETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (500)
Q Consensus       267 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd  345 (500)
                      |+. +++.....        .+                                                         .
T Consensus       168 ~~~~~g~~~~~~--------~~---------------------------------------------------------~  182 (347)
T 3hfq_A          168 NVSDAGQLSEQS--------VL---------------------------------------------------------T  182 (347)
T ss_dssp             EECTTSCEEEEE--------EE---------------------------------------------------------E
T ss_pred             EECCCCcEEEee--------eE---------------------------------------------------------E
Confidence            986 33221100        00                                                         0


Q ss_pred             CCCCCCCceeeecccCcEEEEEECCCCCEEEE-EeCCCcEEEEeCCC--CceE--EEEeCCcccEEEEEeeeeeeecCCC
Q 010816          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTT--GKFV--AVFRGHVGPVYQIRFELIYCFRYPS  420 (500)
Q Consensus       346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~las-gs~Dg~i~lwd~~~--~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~  420 (500)
                      .           .....+..++|+|||++|++ +..++.|++|++..  ++..  ..+......                
T Consensus       183 ~-----------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~----------------  235 (347)
T 3hfq_A          183 M-----------EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD----------------  235 (347)
T ss_dssp             C-----------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT----------------
T ss_pred             c-----------CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC----------------
Confidence            0           00123567999999996655 56688999999764  4432  111111100                


Q ss_pred             CceeeeeccccceeeEEcCCCCEE-EEEECCCcEEEEECCC---ccccccccCcccCEEEEEEcCCCCEEEEEeCC-CcE
Q 010816          421 NFYCVVDMSCCMSLYSWSADSRLL-LSGSKDSTLKVWDIRT---QKLKQDLPGHADEVFAVDWSPDGEKVASGGKD-RVL  495 (500)
Q Consensus       421 ~~~~~~~~~~~~~~~~~s~~~~~l-~s~s~d~~v~iwd~~~---~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D-~~v  495 (500)
                       .    ........++|+|+|++| ++...++.|.+|++..   .+.+..+..+...+..++|+|||++|++++.+ +.|
T Consensus       236 -~----~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  310 (347)
T 3hfq_A          236 -Y----TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNA  310 (347)
T ss_dssp             -C----CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEE
T ss_pred             -C----CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcE
Confidence             0    000112335789999977 4556789999999873   24445556666678899999999999888765 899


Q ss_pred             EEec
Q 010816          496 KLWM  499 (500)
Q Consensus       496 ~iW~  499 (500)
                      .+|.
T Consensus       311 ~v~~  314 (347)
T 3hfq_A          311 TLYA  314 (347)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9993

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=7.5e-19  Score=165.25  Aligned_cols=250  Identities=14%  Similarity=0.129  Sum_probs=167.0

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCce-eEEecCCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEeCC
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTP-MFKCTGHKNWVLCIAWSADGKHLVSGSKAG---ELQCWDPQ  180 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~-d~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~---~i~~wd~~  180 (500)
                      .+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..+..+..+++|+|+|++|+++..++   .|.+||+.
T Consensus        38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~  116 (331)
T 3u4y_A           38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL  116 (331)
T ss_dssp             CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred             ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence            345556 9999999997776665 89999999998887 666666666666699999999999655553   89999998


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCc-eEEEEeCCCc-EEEEECCCCeEEE----EecCccccEEEEEeCCCCe-
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGD-ARIWDVSLRKCVI----CLSGHTLAVTCVKWGGDGV-  253 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~s~s~dg~-v~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~~~-  253 (500)
                      +++.... +.. .....++.|+|     +++ .+++...++. +++|++.....+.    ...........+.|++++. 
T Consensus       117 ~~~~~~~-~~~-~~~~~~~~~sp-----dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~  189 (331)
T 3u4y_A          117 KNKFIST-IPI-PYDAVGIAISP-----NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNF  189 (331)
T ss_dssp             TTEEEEE-EEC-CTTEEEEEECT-----TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSE
T ss_pred             CCCeEEE-EEC-CCCccceEECC-----CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCE
Confidence            8865432 222 23346788876     334 4555566688 9999987543321    1113334578899999984 


Q ss_pred             EE-EEeCCCeEEEEeCCCCee---EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816          254 IY-TGSQDCTIKVWETTQGKL---IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (500)
Q Consensus       254 l~-t~~~dg~i~lwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (500)
                      ++ ++..++.|++||+.+++.   +..+.                                                   
T Consensus       190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~---------------------------------------------------  218 (331)
T 3u4y_A          190 AFVANLIGNSIGILETQNPENITLLNAVG---------------------------------------------------  218 (331)
T ss_dssp             EEEEETTTTEEEEEECSSTTSCEEEEEEE---------------------------------------------------
T ss_pred             EEEEeCCCCeEEEEECCCCcccceeeecc---------------------------------------------------
Confidence            44 455688999999877654   21110                                                   


Q ss_pred             cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCce--EEEEeCCcccEE
Q 010816          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF--VAVFRGHVGPVY  406 (500)
Q Consensus       330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~--~~~~~~h~~~v~  406 (500)
                                                   ....+..++|+|||++|+.++ .++.|.+||..+++.  +..+..+..   
T Consensus       219 -----------------------------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---  266 (331)
T 3u4y_A          219 -----------------------------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLL---  266 (331)
T ss_dssp             -----------------------------CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCC---
T ss_pred             -----------------------------CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccc---
Confidence                                         012245688999999776554 578899999999876  332221100   


Q ss_pred             EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEEEECCCccc
Q 010816          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRTQKL  463 (500)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~~~~  463 (500)
                                ..+       ........++|+|+|++|++++. ++.|++||+.....
T Consensus       267 ----------~~~-------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          267 ----------IDP-------RPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             ----------CCC-------GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             ----------cCC-------CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence                      000       00001123578999998876665 56999999987554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=2e-18  Score=180.38  Aligned_cols=306  Identities=11%  Similarity=0.072  Sum_probs=197.5

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC-----EEEEEEcCCCCEEEEEeCC---------CeEE
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-----VLCIAWSADGKHLVSGSKA---------GELQ  175 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~-----v~~v~~s~~~~~l~s~~~d---------~~i~  175 (500)
                      ...+++|+|||++++++  |++|++||+.++.+...+.+|...     ...++|||||++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            35578999999999986  999999999999887777777643     2347899999999998876         5567


Q ss_pred             EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-ecCccccE-----------
Q 010816          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAV-----------  243 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~h~~~v-----------  243 (500)
                      +||+.+++..  .+..|...+....|+|     +++.++.+ .|+.|++||+.+++.... ..++...+           
T Consensus        96 ~~d~~~~~~~--~l~~~~~~~~~~~~SP-----dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e  167 (740)
T 4a5s_A           96 IYDLNKRQLI--TEERIPNNTQWVTWSP-----VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE  167 (740)
T ss_dssp             EEETTTTEEC--CSSCCCTTEEEEEECS-----STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred             EEECCCCcEE--EcccCCCcceeeEECC-----CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence            9999998754  3566777888999987     55677776 578999999988765542 22333323           


Q ss_pred             ------EEEEeCCCCe-EEEEeCCC------------------------------------eEEEEeCCC---Ce--eEE
Q 010816          244 ------TCVKWGGDGV-IYTGSQDC------------------------------------TIKVWETTQ---GK--LIR  275 (500)
Q Consensus       244 ------~~~~~~~~~~-l~t~~~dg------------------------------------~i~lwd~~~---~~--~~~  275 (500)
                            ..+.|+|||. |+.++.|.                                    .|++||+.+   ++  ...
T Consensus       168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~  247 (740)
T 4a5s_A          168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI  247 (740)
T ss_dssp             HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred             hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence                  2478999984 55554221                                    477788877   62  222


Q ss_pred             Eee------cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe----eCCCeEEEEc
Q 010816          276 ELK------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG----SDDFTMFLWE  345 (500)
Q Consensus       276 ~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----s~d~~v~~wd  345 (500)
                      .+.      ++...+..++++|+..                                    .++..    +.+..|++||
T Consensus       248 ~l~~~~~~~~~~~~~~~~~wspdg~------------------------------------~~~~~~~r~~~~~~i~~~d  291 (740)
T 4a5s_A          248 QITAPASMLIGDHYLCDVTWATQER------------------------------------ISLQWLRRIQNYSVMDICD  291 (740)
T ss_dssp             EECCCHHHHTSCEEEEEEEEEETTE------------------------------------EEEEEEESSTTEEEEEEEE
T ss_pred             EecCCccCCCCCeEEEEEEEeCCCe------------------------------------EEEEEeCCCCCEEEEEEEE
Confidence            332      2666777788877642                                    12221    2344789999


Q ss_pred             CCCCC----C-Cceee--ecccCcEE-----EEEECCCCCEEE-EEeCC---CcEEEEeCCCCceEEEEeCCcccEEEEE
Q 010816          346 PAVSK----Q-PKTRM--TGHQQLVN-----HVYFSPDGQWVA-SASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQIR  409 (500)
Q Consensus       346 ~~~~~----~-~~~~~--~~h~~~v~-----~l~~sp~g~~la-sgs~D---g~i~lwd~~~~~~~~~~~~h~~~v~~~~  409 (500)
                      +....    . ....+  .+|..+|.     .++|+|||+.|+ ..+.+   ..|++||..+++......+ ...+..+ 
T Consensus       292 ~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~-  369 (740)
T 4a5s_A          292 YDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGI-  369 (740)
T ss_dssp             EETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSCEEEE-
T ss_pred             CCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEEEEEE-
Confidence            76544    1 11122  45665554     788999999887 66543   4688999887665433222 2333222 


Q ss_pred             eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC-----CcEEEE--ECCCcccccccc----CcccCEEEEE
Q 010816          410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-----STLKVW--DIRTQKLKQDLP----GHADEVFAVD  478 (500)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d-----~~v~iw--d~~~~~~~~~~~----~h~~~V~~l~  478 (500)
                                                 +.++++.++..+..     +..+||  ++..++....+.    +....+..+.
T Consensus       370 ---------------------------~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~  422 (740)
T 4a5s_A          370 ---------------------------EALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVS  422 (740)
T ss_dssp             ---------------------------EEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEE
T ss_pred             ---------------------------EEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEE
Confidence                                       12345555444332     334444  454443322222    2345678999


Q ss_pred             EcCCCCEEEEEe
Q 010816          479 WSPDGEKVASGG  490 (500)
Q Consensus       479 ~s~dg~~l~s~~  490 (500)
                      |||||++++...
T Consensus       423 ~S~dg~~~~~~~  434 (740)
T 4a5s_A          423 FSKEAKYYQLRC  434 (740)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEe
Confidence            999999876543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=7.8e-19  Score=170.94  Aligned_cols=212  Identities=17%  Similarity=0.105  Sum_probs=150.6

Q ss_pred             CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc----------cc----ccccCcccc
Q 010816          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----------SG----NPLSGHKKW  195 (500)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~----------~~----~~~~~~~~~  195 (500)
                      +.+++|+....       .+...+..+++++++.++++++.|+ +++|+...-..          ..    .....+...
T Consensus        23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            35777764321       1234578899999999999999888 88886421100          00    001124456


Q ss_pred             eEEEEeeeeecCCCCceEE----EEeCCCcEEEEECCCC--------e---EEEEecCccccEEEEEeCCC--CeEEEEe
Q 010816          196 ITGISWEPVHLNAPCRRFV----SASKDGDARIWDVSLR--------K---CVICLSGHTLAVTCVKWGGD--GVIYTGS  258 (500)
Q Consensus       196 v~~~~~~~~~~~~~~~~~~----s~s~dg~v~iwd~~~~--------~---~~~~~~~h~~~v~~~~~~~~--~~l~t~~  258 (500)
                      |.+++|+|     ++..++    +|+.|+.|++||+.+.        +   .+..+.+|...|.+++|+++  ..|++++
T Consensus        95 v~~l~~sp-----dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           95 IHHLALSC-----DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             EEEEEECT-----TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             ccEEEEcC-----CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            89999987     345777    7889999999998654        1   24566789999999999986  3688999


Q ss_pred             CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      .||+|++||++++....                                                               
T Consensus       170 ~Dg~v~iwD~~~~~~~~---------------------------------------------------------------  186 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVC---------------------------------------------------------------  186 (434)
T ss_dssp             TTSCEEEEEESSSEEEE---------------------------------------------------------------
T ss_pred             CCCeEEEEEcCCCccee---------------------------------------------------------------
Confidence            99999999987653211                                                               


Q ss_pred             CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc-------cEEEEEee
Q 010816          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-------PVYQIRFE  411 (500)
Q Consensus       339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~-------~v~~~~~~  411 (500)
                                      ...+|...|.+++|+|+|++|++|+.||.|++||.+ ++....+..|..       .+.+    
T Consensus       187 ----------------~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~----  245 (434)
T 2oit_A          187 ----------------ATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLD----  245 (434)
T ss_dssp             ----------------EEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEE----
T ss_pred             ----------------eccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEE----
Confidence                            112456679999999999999999999999999998 666555554422       3333    


Q ss_pred             eeeeecCCCCceeeeeccccceeeEEcCCCCEEEE-EECCC------cEEEEECCCc
Q 010816          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS-GSKDS------TLKVWDIRTQ  461 (500)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~s~d~------~v~iwd~~~~  461 (500)
                                             +.|++++.++++ ++.||      .+++|++...
T Consensus       246 -----------------------v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          246 -----------------------VLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             -----------------------EEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             -----------------------EEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence                                   367888877765 34443      3899999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=3.1e-17  Score=156.22  Aligned_cols=265  Identities=12%  Similarity=0.114  Sum_probs=170.0

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCC----CcEEEEeCCC--Cc--eeEEecCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEE
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGD----TTVRLWDLNT--QT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCW  177 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d----~~i~iwd~~~--~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~~w  177 (500)
                      |......++|+|||++|++++.+    +.|.+|++..  +.  .+.....+......+++  ++++|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            45667789999999999999876    7999998865  32  22333445567788888  888887776 57899999


Q ss_pred             eCCCCCcccccc-------------cCcccceEEEEeeeeecCCCCceE-EEEeCCCcEEEEECCCCeE-----------
Q 010816          178 DPQTGKPSGNPL-------------SGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKC-----------  232 (500)
Q Consensus       178 d~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~-----------  232 (500)
                      ++..........             ..+...+.++.|+|     +++++ +++..++.|++|++.....           
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-----DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-----CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            987543222110             11122345677766     44544 4555688999998875431           


Q ss_pred             --EEEecCccccEEEEEeCCCCe-EEEEe-CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCC
Q 010816          233 --VICLSGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (500)
Q Consensus       233 --~~~~~~h~~~v~~~~~~~~~~-l~t~~-~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (500)
                        ......+......++|++++. +++++ .++.|.+||+.+++.....        .+.                    
T Consensus       201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~--------~~~--------------------  252 (361)
T 3scy_A          201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ--------TVA--------------------  252 (361)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE--------EEE--------------------
T ss_pred             cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE--------EEe--------------------
Confidence              111223345567899999984 65555 6899999998765421100        000                    


Q ss_pred             CHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC--CcEEE
Q 010816          309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD--KSIKL  386 (500)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D--g~i~l  386 (500)
                                                                    ....+......++|+|||++|+++..+  +.|.+
T Consensus       253 ----------------------------------------------~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v  286 (361)
T 3scy_A          253 ----------------------------------------------ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI  286 (361)
T ss_dssp             ----------------------------------------------SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred             ----------------------------------------------cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence                                                          000112335789999999988766654  89999


Q ss_pred             EeCC--CCce--EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEE--ECC
Q 010816          387 WNGT--TGKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVW--DIR  459 (500)
Q Consensus       387 wd~~--~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iw--d~~  459 (500)
                      |++.  +++.  +..+.. ..                           ....++|+|+|++|++++ .++.|.+|  |.+
T Consensus       287 ~~~~~~~g~~~~~~~~~~-g~---------------------------~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~  338 (361)
T 3scy_A          287 FKVDETNGTLTKVGYQLT-GI---------------------------HPRNFIITPNGKYLLVACRDTNVIQIFERDQA  338 (361)
T ss_dssp             EEECTTTCCEEEEEEEEC-SS---------------------------CCCEEEECTTSCEEEEEETTTTEEEEEEECTT
T ss_pred             EEEcCCCCcEEEeeEecC-CC---------------------------CCceEEECCCCCEEEEEECCCCCEEEEEEECC
Confidence            9985  4442  222221 11                           112347899999999888 67899996  555


Q ss_pred             Cccccccc-cCcccCEEEEEEc
Q 010816          460 TQKLKQDL-PGHADEVFAVDWS  480 (500)
Q Consensus       460 ~~~~~~~~-~~h~~~V~~l~~s  480 (500)
                      ++++.... ..+...+.++.|.
T Consensus       339 ~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          339 TGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TCCEEECSCCEECSSEEEEEEE
T ss_pred             CCcEeecceeeeCCCCeEEEEc
Confidence            66665433 2245578888885

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.83  E-value=5.8e-18  Score=160.56  Aligned_cols=235  Identities=11%  Similarity=0.069  Sum_probs=170.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCc-eEEEEeCCCc
Q 010816          150 KNWVLCIAWSADGKHLVSGSK-------AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGD  221 (500)
Q Consensus       150 ~~~v~~v~~s~~~~~l~s~~~-------d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~s~s~dg~  221 (500)
                      ...+..++|+|++++|++++.       ++.|.+||..+++......  ......++.|.|     +++ .+++...++.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~-----dg~~l~v~~~~~~~  112 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINN-----TTQTLWFGNTVNSA  112 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEET-----TTTEEEEEETTTTE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECC-----CCCEEEEEecCCCE
Confidence            446789999999999888774       5689999999887543221  122345666665     334 4566677899


Q ss_pred             EEEEECCCCeEEEEecCccc---------cEEEEEeCCCC-eEEEEe--CCCeEEEEeCCCCeeEEEeecCCceEEEEEe
Q 010816          222 ARIWDVSLRKCVICLSGHTL---------AVTCVKWGGDG-VIYTGS--QDCTIKVWETTQGKLIRELKGHGHWVNSLAL  289 (500)
Q Consensus       222 v~iwd~~~~~~~~~~~~h~~---------~v~~~~~~~~~-~l~t~~--~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~  289 (500)
                      |.+||..+++.+..+..+..         .+.++.|++++ .+++++  .++.|.+||..+++.+..+..          
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~----------  182 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN----------  182 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC----------
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC----------
Confidence            99999999988777665432         26788999886 355544  478899999887765443220          


Q ss_pred             cCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEEC
Q 010816          290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS  369 (500)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~s  369 (500)
                                                                                           +...+.+++|+
T Consensus       183 ---------------------------------------------------------------------~~~~~~~~~~s  193 (353)
T 3vgz_A          183 ---------------------------------------------------------------------TGKMSTGLALD  193 (353)
T ss_dssp             ---------------------------------------------------------------------CCTTCCCCEEE
T ss_pred             ---------------------------------------------------------------------CCCccceEEEC
Confidence                                                                                 01123457899


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceEEEEeC----CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE
Q 010816          370 PDGQWVASASFDKSIKLWNGTTGKFVAVFRG----HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL  445 (500)
Q Consensus       370 p~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  445 (500)
                      |+|++|++++.++.|.+||..+++.+..+..    +......                           ++|+|+|++++
T Consensus       194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~s~dg~~l~  246 (353)
T 3vgz_A          194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFIN---------------------------ISLDTARQRAF  246 (353)
T ss_dssp             TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEE---------------------------EEEETTTTEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccce---------------------------EEECCCCCEEE
Confidence            9999999999999999999999988776653    2222222                           36799999877


Q ss_pred             EEEC-CCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEe-CCCcEEEec
Q 010816          446 SGSK-DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLKLWM  499 (500)
Q Consensus       446 s~s~-d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~-~D~~v~iW~  499 (500)
                      .++. ++.|.+||..+++....+.....  ..++|+|||++++.++ .++.|.+|+
T Consensus       247 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          247 ITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEE
Confidence            7765 48999999999888766654332  5789999999766555 789999997

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.82  E-value=4e-18  Score=161.46  Aligned_cols=254  Identities=14%  Similarity=0.171  Sum_probs=162.9

Q ss_pred             CcccEEEEEEcCCCCeEEEEeC---CCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCC
Q 010816          107 HTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQ  180 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~---d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~~wd~~  180 (500)
                      +...+..++|+|||+ |++++.   ++.|.+||+.++.  .+..+..+...+..++|+|||++|++++ .++.|.+|++.
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            345667899999999 555543   6899999997665  3334445677889999999999998887 67999999985


Q ss_pred             C-CCcccc-cc--cC-------cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-CCeEEE--EecCc-cccEEE
Q 010816          181 T-GKPSGN-PL--SG-------HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVI--CLSGH-TLAVTC  245 (500)
Q Consensus       181 ~-~~~~~~-~~--~~-------~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~-~~~~~~--~~~~h-~~~v~~  245 (500)
                      . +..... .+  .+       +...+.++.|+|     +++.+++...++.|++||+. .++...  .+..+ ......
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-----dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~  191 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-----DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH  191 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-----TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECC-----CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence            3 321110 00  00       112366677766     44566677778899999998 444322  12222 235677


Q ss_pred             EEeCCCCe-EEE-EeCCCeEEEEeCCC--CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816          246 VKWGGDGV-IYT-GSQDCTIKVWETTQ--GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (500)
Q Consensus       246 ~~~~~~~~-l~t-~~~dg~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (500)
                      ++|++++. +++ +..++.|++|++..  ++....        ..+...                               
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~--------~~~~~~-------------------------------  232 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL--------GIVKTI-------------------------------  232 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE--------EEEESS-------------------------------
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe--------eeeeec-------------------------------
Confidence            99999985 544 56788999998753  322110        000000                               


Q ss_pred             hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCC-C--ceEEE
Q 010816          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTT-G--KFVAV  397 (500)
Q Consensus       322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l-asgs~Dg~i~lwd~~~-~--~~~~~  397 (500)
                                               ...      . .....+..++|+|||++| ++...++.|.+|++.. +  +.+..
T Consensus       233 -------------------------~~~------~-~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~  280 (347)
T 3hfq_A          233 -------------------------PAD------Y-TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ  280 (347)
T ss_dssp             -------------------------CTT------C-CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred             -------------------------CCC------C-CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence                                     000      0 011347789999999977 5666789999999863 2  33333


Q ss_pred             EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC-CcEEEE--ECCCcccc
Q 010816          398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-STLKVW--DIRTQKLK  464 (500)
Q Consensus       398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d-~~v~iw--d~~~~~~~  464 (500)
                      +..+....                           ..++|+|+|++|++++.+ +.|.+|  |..++++.
T Consensus       281 ~~~~~~~~---------------------------~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          281 ISTEGDFP---------------------------RDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EECSSSCC---------------------------CEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EecCCCCc---------------------------CeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            33332222                           233789999999888865 899999  55556553

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=3.7e-19  Score=185.68  Aligned_cols=282  Identities=12%  Similarity=0.096  Sum_probs=183.9

Q ss_pred             cEEEEEEcCCCCeEEEEeC---------CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          110 AVLSVAFSPDGRQLASGSG---------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~---------d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      .|.+++|||||++||+++.         |+.|++||+.+++.+.. ......+.+++|||||+.|+.+. |+.|++||+.
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~  138 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP  138 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence            4889999999999998876         78999999998865210 11135688999999999999885 7899999998


Q ss_pred             CCCcccccccCcccce-----------------EEEEeeeeecCCCCceEEEEeCCC-----------------------
Q 010816          181 TGKPSGNPLSGHKKWI-----------------TGISWEPVHLNAPCRRFVSASKDG-----------------------  220 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~~~~~~~s~s~dg-----------------------  220 (500)
                      +++.......++...+                 .++.|+|     +++.+++++.|.                       
T Consensus       139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-----DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-----NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-----TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-----CCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            8875433333333322                 3788876     567888877552                       


Q ss_pred             -----------cEEEEECCCCeEE---E-----EecCccccEEEEEeCCCCeEEEE-eC--C--CeEEEEe----CCCCe
Q 010816          221 -----------DARIWDVSLRKCV---I-----CLSGHTLAVTCVKWGGDGVIYTG-SQ--D--CTIKVWE----TTQGK  272 (500)
Q Consensus       221 -----------~v~iwd~~~~~~~---~-----~~~~h~~~v~~~~~~~~~~l~t~-~~--d--g~i~lwd----~~~~~  272 (500)
                                 .|++||+.+++..   .     .+.+|...+.+++|++|+.++.. ..  +  ..|.+||    ..+++
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~  293 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD  293 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence                       7889999887642   1     13468888999999999865543 22  2  2488899    77776


Q ss_pred             eEEEe----ecCCceEE-----EEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE-EEEeeCCC--e
Q 010816          273 LIREL----KGHGHWVN-----SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDF--T  340 (500)
Q Consensus       273 ~~~~~----~~~~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~s~d~--~  340 (500)
                      ....+    ..+..++.     .+.++++.                                   ... ++++..++  .
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-----------------------------------~~l~~~~~~~~g~~~  338 (719)
T 1z68_A          294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDA-----------------------------------ISYYKIFSDKDGYKH  338 (719)
T ss_dssp             CCGGGEEEEECSSSCSSSSSCCCCEECTTS-----------------------------------SCEEEEEECTTSCEE
T ss_pred             eEEEEecccccCCceEccccCCccEECCCC-----------------------------------CeEEEEEEccCCceE
Confidence            54444    34555554     45555542                                   112 22344455  5


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC-----CcEEEEeCCC--Cce-EEEEeC----CcccEEEE
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTT--GKF-VAVFRG----HVGPVYQI  408 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D-----g~i~lwd~~~--~~~-~~~~~~----h~~~v~~~  408 (500)
                      |.+||+....  ...+..+...+..+.++ +++.|+..+.+     +..++|.+..  +.. ...+..    |...+   
T Consensus       339 l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~---  412 (719)
T 1z68_A          339 IHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQY---  412 (719)
T ss_dssp             EEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCB---
T ss_pred             EEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCce---
Confidence            6677765433  34455566668887777 88877766665     7888887643  321 111111    22222   


Q ss_pred             EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECC--CcEEEEECCCccc
Q 010816          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKD--STLKVWDIRTQKL  463 (500)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d--~~v~iwd~~~~~~  463 (500)
                                              ...+|+|++++++.. +.+  ..+.+||+.+++.
T Consensus       413 ------------------------~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~  446 (719)
T 1z68_A          413 ------------------------YTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE  446 (719)
T ss_dssp             ------------------------EEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred             ------------------------EEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence                                    223678998877743 333  4688999877654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=1.4e-17  Score=158.19  Aligned_cols=296  Identities=14%  Similarity=0.082  Sum_probs=191.5

Q ss_pred             CCCeEEEEe------CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCC
Q 010816          119 DGRQLASGS------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTG  182 (500)
Q Consensus       119 ~~~~lat~~------~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------~d~~i~~wd~~~~  182 (500)
                      +++++....      .|+.|.+||..+++.+..+..+..+  .++|+|||++|+++.          .++.|.+||..++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            555555543      3779999999998887777766555  899999999999876          3678999999887


Q ss_pred             CcccccccC-----cccceEEEEeeeeecCCCCceEEEEeC--CCcEEEEECCCCeEEEE-ecCccccEEEEEeCCCC--
Q 010816          183 KPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG--  252 (500)
Q Consensus       183 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~s~s~--dg~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~--  252 (500)
                      +........     +......+.++|     ++++++++..  +++|.+||+.+++.+.. +... . ...+.+.+++  
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~sp-----dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~  164 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTT-----DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPR  164 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECT-----TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSS
T ss_pred             cEEEEEEcCccccccCCCcceEEECC-----CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCe
Confidence            654322111     112233455544     5667776653  68999999999988776 4321 1 1223445544  


Q ss_pred             eEEEEeCCCeEEEEeCCC-CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816          253 VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (500)
Q Consensus       253 ~l~t~~~dg~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (500)
                      .+++.+.||.+.+|+... ++.......  .    ..+.+..          ...+.               .....+..
T Consensus       165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~~--~----~~~~~~~----------~~~~~---------------~~~~~g~~  213 (361)
T 2oiz_A          165 SFMTICGDGGLLTINLGEDGKVASQSRS--K----QMFSVKD----------DPIFI---------------APALDKDK  213 (361)
T ss_dssp             EEEEEETTSSEEEEEECTTSSEEEEEEC--C----CCSCTTT----------SCBCS---------------CCEECSSE
T ss_pred             eEEEECCCCcEEEEEECCCCcEeeeccc--c----ceEcCCC----------CceEE---------------EecccCCE
Confidence            678889999999998765 444321110  0    0000000          00000               00001234


Q ss_pred             EEEeeCCCeEEEEcCCCCCCCcee-ee------cccCc----EEEEEECCCCCEEEEEeC-----------CCcEEEEeC
Q 010816          332 LVSGSDDFTMFLWEPAVSKQPKTR-MT------GHQQL----VNHVYFSPDGQWVASASF-----------DKSIKLWNG  389 (500)
Q Consensus       332 ~~s~s~d~~v~~wd~~~~~~~~~~-~~------~h~~~----v~~l~~sp~g~~lasgs~-----------Dg~i~lwd~  389 (500)
                      ++..+.++.+.++|.......... ..      .+...    ...++|+|+++.+.++..           ++.|.+||+
T Consensus       214 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~  293 (361)
T 2oiz_A          214 AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT  293 (361)
T ss_dssp             EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred             EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence            555667889999997533211100 00      00111    112689999887766543           348999999


Q ss_pred             CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc--cccccc
Q 010816          390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ--KLKQDL  467 (500)
Q Consensus       390 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~--~~~~~~  467 (500)
                      .+++.+..+..+.  ...+                           +|+|+|++|++++. +.|.+||..++  +.+..+
T Consensus       294 ~t~~~v~~i~~~~--p~~i---------------------------a~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          294 KTKQRVARIPGRD--ALSM---------------------------TIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             TTTEEEEEEECTT--CCEE---------------------------EEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             CCCcEEEEEecCC--eeEE---------------------------EECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence            9999998888765  4444                           67999999998887 99999999999  888887


Q ss_pred             cCcccCEEEEEEcCCCC
Q 010816          468 PGHADEVFAVDWSPDGE  484 (500)
Q Consensus       468 ~~h~~~V~~l~~s~dg~  484 (500)
                      ..+......+.++|||+
T Consensus       344 ~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          344 EGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TTSCSSEEEEEECCCSC
T ss_pred             ccCCCCcEEEEecCCCC
Confidence            66667788999999986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=6.5e-19  Score=179.14  Aligned_cols=232  Identities=13%  Similarity=0.058  Sum_probs=164.0

Q ss_pred             ccceEEEEeeeeecCCCCceEEEEeC-CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC---CCeEEEEeC
Q 010816          193 KKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ---DCTIKVWET  268 (500)
Q Consensus       193 ~~~v~~~~~~~~~~~~~~~~~~s~s~-dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~---dg~i~lwd~  268 (500)
                      ..+|.++.|+|     +++++++++. ||+++||++..++.......+...+.++.|+||..+++++.   +...++|.+
T Consensus        21 ~~~~~~~~~~~-----DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           21 AVEKYSLQGVV-----DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HSCEEEEEEEE-----TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEE
T ss_pred             ccchheeecCC-----CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEE
Confidence            45688888877     5678888877 99999999977665544433446899999999955666664   455666554


Q ss_pred             CC---CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816          269 TQ---GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE  345 (500)
Q Consensus       269 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd  345 (500)
                      ..   +............  ..+++++.                                  ....+++++.++. .+||
T Consensus        96 ~~~~~g~~~~l~~~~~~~--~~~~s~dg----------------------------------~~~~~~s~~~~~~-~l~d  138 (582)
T 3o4h_A           96 NTSRPGEEQRLEAVKPMR--ILSGVDTG----------------------------------EAVVFTGATEDRV-ALYA  138 (582)
T ss_dssp             ETTSTTCCEECTTSCSBE--EEEEEECS----------------------------------SCEEEEEECSSCE-EEEE
T ss_pred             eccCCCccccccCCCCce--eeeeCCCC----------------------------------CeEEEEecCCCCc-eEEE
Confidence            32   2222211222222  33444331                                  0123444555554 4998


Q ss_pred             CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC----CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCC
Q 010816          346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD----KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN  421 (500)
Q Consensus       346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D----g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  421 (500)
                      +....  ...+..+..  .+++|||||++||+++.|    +.|++||+.+++.. .+.+|.+.+..+             
T Consensus       139 ~~~g~--~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~-------------  200 (582)
T 3o4h_A          139 LDGGG--LRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSA-------------  200 (582)
T ss_dssp             EETTE--EEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEE-------------
T ss_pred             ccCCc--EEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccc-------------
Confidence            75432  223333333  789999999999988887    78999999988765 566776666554             


Q ss_pred             ceeeeeccccceeeEEcCCCCEEEEEECCC--cEEEEECCCccccccccCcccCEEEEE--------EcCCCCEEEEEeC
Q 010816          422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDS--TLKVWDIRTQKLKQDLPGHADEVFAVD--------WSPDGEKVASGGK  491 (500)
Q Consensus       422 ~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~~h~~~V~~l~--------~s~dg~~l~s~~~  491 (500)
                                    +|||||++|+++..++  .|++||+.+++.. .+.+|...+..+.        |+|||..+++++.
T Consensus       201 --------------~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  265 (582)
T 3o4h_A          201 --------------SISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR  265 (582)
T ss_dssp             --------------EECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred             --------------eECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence                          6899999999888898  8999999998877 7777877776677        9999988999999


Q ss_pred             CCcEEEec
Q 010816          492 DRVLKLWM  499 (500)
Q Consensus       492 D~~v~iW~  499 (500)
                      |++++||.
T Consensus       266 ~g~~~l~~  273 (582)
T 3o4h_A          266 EGRSAVFI  273 (582)
T ss_dssp             TTEEEEEE
T ss_pred             CCcEEEEE
Confidence            99999996

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=4.4e-17  Score=155.21  Aligned_cols=269  Identities=8%  Similarity=0.048  Sum_probs=166.1

Q ss_pred             CEEEEEe----CCCeEEEEeC--CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCC----CcEEEEECCC--C
Q 010816          163 KHLVSGS----KAGELQCWDP--QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD----GDARIWDVSL--R  230 (500)
Q Consensus       163 ~~l~s~~----~d~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d----g~v~iwd~~~--~  230 (500)
                      .+++.|+    .++.|.+|++  .+++....... +......++|+|     +++++++++.+    +.|.+|++..  +
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~sp-----dg~~l~~~~~~~~~~~~v~~~~~~~~~g   87 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSA-----DGKFVYSVNEFSKDQAAVSAFAFDKEKG   87 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECT-----TSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECC-----CCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence            3455554    3568888865  45543222112 444455566665     55677777775    7999998865  4


Q ss_pred             e--EEEEecCccccEEEEEeCCCCeEEEEe-CCCeEEEEeCCCCeeEEEe----e--c--------CCceEEEEEecCcc
Q 010816          231 K--CVICLSGHTLAVTCVKWGGDGVIYTGS-QDCTIKVWETTQGKLIREL----K--G--------HGHWVNSLALSTEY  293 (500)
Q Consensus       231 ~--~~~~~~~h~~~v~~~~~~~~~~l~t~~-~dg~i~lwd~~~~~~~~~~----~--~--------~~~~v~~~~~~~~~  293 (500)
                      +  .+.....+......+++ ....+++++ .++.|.+|++.....+..+    .  +        +...+.+++++|+ 
T Consensus        88 ~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd-  165 (361)
T 3scy_A           88 TLHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD-  165 (361)
T ss_dssp             EEEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT-
T ss_pred             cEEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC-
Confidence            3  33334444455667777 344555554 6889999998754322111    1  0        0112344555554 


Q ss_pred             eeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc-EEEEeeCCCeEEEEcCCCCCC------C------ceeeeccc
Q 010816          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-RLVSGSDDFTMFLWEPAVSKQ------P------KTRMTGHQ  360 (500)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~s~d~~v~~wd~~~~~~------~------~~~~~~h~  360 (500)
                                                         +. .++++..++.+.+|++.....      .      ......+.
T Consensus       166 -----------------------------------g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  210 (361)
T 3scy_A          166 -----------------------------------GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG  210 (361)
T ss_dssp             -----------------------------------SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT
T ss_pred             -----------------------------------CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC
Confidence                                               23 345555688999998764432      1      11122344


Q ss_pred             CcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceE--EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816          361 QLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFV--AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (500)
Q Consensus       361 ~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (500)
                      ..+..++|+|||++|++++ .++.|++|++.++++.  ..+......                        ......++|
T Consensus       211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~------------------------~~~~~~i~~  266 (361)
T 3scy_A          211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVN------------------------AQGSGDIHL  266 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSC------------------------CCCEEEEEE
T ss_pred             CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCC------------------------CCCcccEEE
Confidence            5678999999999887777 6899999999877542  112111100                        001123478


Q ss_pred             cCCCCEEEEEECC--CcEEEEECC--Ccc--ccccccCcccCEEEEEEcCCCCEEEEEe-CCCcEEEec
Q 010816          438 SADSRLLLSGSKD--STLKVWDIR--TQK--LKQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLKLWM  499 (500)
Q Consensus       438 s~~~~~l~s~s~d--~~v~iwd~~--~~~--~~~~~~~h~~~V~~l~~s~dg~~l~s~~-~D~~v~iW~  499 (500)
                      +|||++|+++..+  +.|.+|++.  +++  .+..+.. ...+..++|+|||++|++++ .++.|.+|.
T Consensus       267 spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          267 SPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             CCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence            9999999777665  899999985  344  3333433 44678999999999998887 678999974

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=4.1e-17  Score=155.57  Aligned_cols=277  Identities=11%  Similarity=0.098  Sum_probs=166.3

Q ss_pred             EEEEeCC--CcEEEEeC--CCCceeE--Eec-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCCcccccccCcc-
Q 010816          123 LASGSGD--TTVRLWDL--NTQTPMF--KCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-TGKPSGNPLSGHK-  193 (500)
Q Consensus       123 lat~~~d--~~i~iwd~--~~~~~~~--~~~-~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~-  193 (500)
                      |+.|+..  +.|.+|++  .+++...  ... +....+..++|+|||++|++++.+ .|.+|++. +++....  ..+. 
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~--~~~~~   81 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE--ASHPI   81 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE--EEEEC
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe--eEeec
Confidence            4455442  45777665  3443211  111 233467889999999999999888 99999986 6653211  1111 


Q ss_pred             -cceEEEEeeeeecCCCCce--EEEEe-------------CCCcEEEEECC-CCeEEEEec----CccccEEEEEeCCCC
Q 010816          194 -KWITGISWEPVHLNAPCRR--FVSAS-------------KDGDARIWDVS-LRKCVICLS----GHTLAVTCVKWGGDG  252 (500)
Q Consensus       194 -~~v~~~~~~~~~~~~~~~~--~~s~s-------------~dg~v~iwd~~-~~~~~~~~~----~h~~~v~~~~~~~~~  252 (500)
                       .....+.|+|     ++++  +++++             .++.+++|++. .++....+.    .+...+.+++|+++|
T Consensus        82 ~g~~~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG  156 (365)
T 1jof_A           82 GGHPRANDADT-----NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE  156 (365)
T ss_dssp             CSSGGGGCTTS-----CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             CCCCccEEECC-----CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence             1122344433     4453  33443             68999999997 455433332    245678899999998


Q ss_pred             e-EEEEe-CCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816          253 V-IYTGS-QDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP  329 (500)
Q Consensus       253 ~-l~t~~-~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (500)
                      . ++++. .++.|++||+. +|+.....        .+                                          
T Consensus       157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~--------~~------------------------------------------  186 (365)
T 1jof_A          157 TYLYSADLTANKLWTHRKLASGEVELVG--------SV------------------------------------------  186 (365)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCEEEEE--------EE------------------------------------------
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCEEEee--------eE------------------------------------------
Confidence            4 55554 46789999986 55421100        00                                          


Q ss_pred             cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC-CCcEEEEeCC--CCceEE---EEeCCcc
Q 010816          330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGT--TGKFVA---VFRGHVG  403 (500)
Q Consensus       330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~-Dg~i~lwd~~--~~~~~~---~~~~h~~  403 (500)
                                     .          ...|...+..++|+|||++|++++. ++.|.+|++.  +|++..   .+...  
T Consensus       187 ---------------~----------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~--  239 (365)
T 1jof_A          187 ---------------D----------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI--  239 (365)
T ss_dssp             ---------------E----------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS--
T ss_pred             ---------------e----------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC--
Confidence                           0          0012234778999999999887775 7899999764  565421   11110  


Q ss_pred             cEEEEEeeeeeeecCCCCceeeee---ccccceeeE-EcCCCCEEEEEECCC------cEEEEECC-Cccccc---cccC
Q 010816          404 PVYQIRFELIYCFRYPSNFYCVVD---MSCCMSLYS-WSADSRLLLSGSKDS------TLKVWDIR-TQKLKQ---DLPG  469 (500)
Q Consensus       404 ~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~s~~~~~l~s~s~d~------~v~iwd~~-~~~~~~---~~~~  469 (500)
                                     +........   .......++ |+|||++|++++.+.      .|.+|++. ++++..   ....
T Consensus       240 ---------------~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~  304 (365)
T 1jof_A          240 ---------------PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             ---------------CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             ---------------CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec
Confidence                           000000000   000123347 899999988776432      89999986 555432   1333


Q ss_pred             cccCEEEEEEcC---CCCEEEEEeCC-CcEEEec
Q 010816          470 HADEVFAVDWSP---DGEKVASGGKD-RVLKLWM  499 (500)
Q Consensus       470 h~~~V~~l~~s~---dg~~l~s~~~D-~~v~iW~  499 (500)
                      +...+..++|+|   ||++|++++.+ ++|++|+
T Consensus       305 ~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence            444556789999   89999999875 8999995

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=1.8e-17  Score=156.86  Aligned_cols=249  Identities=13%  Similarity=0.065  Sum_probs=165.4

Q ss_pred             CCceEEEEeCCCcEEEEECCCCeEEEEecCcc-ccEEEEEeCCCCe-E-EEEeCCCeEEEEeCCCCeeEEEeecCC----
Q 010816          209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHT-LAVTCVKWGGDGV-I-YTGSQDCTIKVWETTQGKLIRELKGHG----  281 (500)
Q Consensus       209 ~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~-l-~t~~~dg~i~lwd~~~~~~~~~~~~~~----  281 (500)
                      ....+++++.++.|++||+.+++.+..+..+. ..+..++|++++. + +++..++.|.+||+.+++....+....    
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~   89 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE   89 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccc
Confidence            44578899999999999999998887776443 2466788999873 4 455678999999999998877665322    


Q ss_pred             --ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC------------CeEEEEcCC
Q 010816          282 --HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD------------FTMFLWEPA  347 (500)
Q Consensus       282 --~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d------------~~v~~wd~~  347 (500)
                        ..+..++++++                                    +..+++++.+            +.|.+||+.
T Consensus        90 ~~~~~~~~~~spd------------------------------------g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~  133 (349)
T 1jmx_B           90 VGRSMYSFAISPD------------------------------------GKEVYATVNPTQRLNDHYVVKPPRLEVFSTA  133 (349)
T ss_dssp             EEECSSCEEECTT------------------------------------SSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred             ccccccceEECCC------------------------------------CCEEEEEcccccccccccccCCCeEEEEECC
Confidence              22455555554                                    3356665544            899999976


Q ss_pred             CCCCC-ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc-----------------------
Q 010816          348 VSKQP-KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-----------------------  403 (500)
Q Consensus       348 ~~~~~-~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~-----------------------  403 (500)
                      ..... ......+...+.+++|+|+|+ +++++.  .|++||..+++.+..+..+..                       
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (349)
T 1jmx_B          134 DGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF  210 (349)
T ss_dssp             GGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred             CccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE
Confidence            42211 111223344688899999999 555544  499999999998877654320                       


Q ss_pred             -cEEEEEeee--------------eeeecCCCCceeee---eccccceeeEEcC-CCCEEEEEECCCcEEEEECCCcccc
Q 010816          404 -PVYQIRFEL--------------IYCFRYPSNFYCVV---DMSCCMSLYSWSA-DSRLLLSGSKDSTLKVWDIRTQKLK  464 (500)
Q Consensus       404 -~v~~~~~~~--------------~~~~~~~~~~~~~~---~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iwd~~~~~~~  464 (500)
                       ....+.+..              ..............   ........++++| +|++++++  ++.|++||+.+++..
T Consensus       211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~  288 (349)
T 1jmx_B          211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI  288 (349)
T ss_dssp             EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE
T ss_pred             EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE
Confidence             011111100              00000000000000   0112234457889 99999988  889999999998877


Q ss_pred             ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          465 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       465 ~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ..+..+ ..+.+++|+|||++|++++.++.|++|+
T Consensus       289 ~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d  322 (349)
T 1jmx_B          289 KAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFN  322 (349)
T ss_dssp             EEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred             EEEcCC-CCccceEECCCCCEEEEecCCCeEEEEe
Confidence            666533 3567999999999999999999999997

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.78  E-value=3.7e-17  Score=168.92  Aligned_cols=258  Identities=14%  Similarity=0.018  Sum_probs=175.2

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEE--eCCCcEEEEeCCCCceeEEecCCCCCEE---------EEEEc--CCCCE-EEE
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASG--SGDTTVRLWDLNTQTPMFKCTGHKNWVL---------CIAWS--ADGKH-LVS  167 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~--~~d~~i~iwd~~~~~~~~~~~~h~~~v~---------~v~~s--~~~~~-l~s  167 (500)
                      ..+.+|...|..++|++++.++++.  +.++...||....+.....+..|...+.         ...|+  |||+. |+.
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            3467899999999999887777777  5688999999655555566777766655         56565  99998 766


Q ss_pred             EeC-CCeEEEEeCC--C-CCcccccccC-----cccceEEEEeeeeecCCCCceEEEEeCC----------CcEEEEECC
Q 010816          168 GSK-AGELQCWDPQ--T-GKPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASKD----------GDARIWDVS  228 (500)
Q Consensus       168 ~~~-d~~i~~wd~~--~-~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~s~s~d----------g~v~iwd~~  228 (500)
                      ++. +..|.+|++.  . +...  .+..     |...+.+++|+|     +++++++++.|          ..|++||+.
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~~~--~l~~~~~~~~~~~~~~~~~sp-----Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~  169 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAVPR--PLTPVSAVGGGLRWADPVLLP-----ERGEVWCMAEEFTGEGPSDVRRFLAAVPLD  169 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCCCE--ECSCCCCSTTCEEEEEEEEET-----TTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred             EECCCCeEEEEcCCCCCCCCCE--eccCCccCCCCccccCcEECC-----CCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence            544 5667777765  2 4322  2333     566778888887     55678888776          589999998


Q ss_pred             C------CeEEEEec-CccccEEEEEeCCCCe-EEEEeCC--------CeEEEEeCC-CC---eeEEEeecCCceEEEEE
Q 010816          229 L------RKCVICLS-GHTLAVTCVKWGGDGV-IYTGSQD--------CTIKVWETT-QG---KLIRELKGHGHWVNSLA  288 (500)
Q Consensus       229 ~------~~~~~~~~-~h~~~v~~~~~~~~~~-l~t~~~d--------g~i~lwd~~-~~---~~~~~~~~~~~~v~~~~  288 (500)
                      .      +... .+. .+...+..+.|++||. |+.++.+        ..|++||+. +|   +.......+...+..+.
T Consensus       170 ~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~  248 (662)
T 3azo_A          170 GSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE  248 (662)
T ss_dssp             STTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred             CCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence            7      5543 444 5556788889999984 6666644        479999998 56   44344444566788888


Q ss_pred             ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC--eEEEEcCCCCCCCceeeecccCc----
Q 010816          289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF--TMFLWEPAVSKQPKTRMTGHQQL----  362 (500)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~--~v~~wd~~~~~~~~~~~~~h~~~----  362 (500)
                      ++++.                                    ..+++++.++  .|++||..... .......+...    
T Consensus       249 ~spdg------------------------------------~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~p~  291 (662)
T 3azo_A          249 WAPDG------------------------------------SLIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFAGPL  291 (662)
T ss_dssp             ECTTS------------------------------------CEEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSSCCC
T ss_pred             ECCCC------------------------------------eEEEEECCCCCeEEEEEECCCCc-eeecccccccccCcc
Confidence            87753                                    3466667777  56666653322 11111222221    


Q ss_pred             ----EEEEEECCCCCEEEEEeCCCcEEEE--eCCCCceEEEEeCCcccEE
Q 010816          363 ----VNHVYFSPDGQWVASASFDKSIKLW--NGTTGKFVAVFRGHVGPVY  406 (500)
Q Consensus       363 ----v~~l~~sp~g~~lasgs~Dg~i~lw--d~~~~~~~~~~~~h~~~v~  406 (500)
                          +.+++|+|+++++++++. +.++||  |..+++ +..+..|.+.+.
T Consensus       292 w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~  339 (662)
T 3azo_A          292 WTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWA  339 (662)
T ss_dssp             CSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEE
T ss_pred             ccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEE
Confidence                467899999999999998 999999  655555 555666655443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.77  E-value=4e-17  Score=157.02  Aligned_cols=298  Identities=16%  Similarity=0.135  Sum_probs=179.9

Q ss_pred             ccccCCcccEEE-----EEEcCCCCeEEEEeC-CCc--EEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 010816          102 ATIAGHTEAVLS-----VAFSPDGRQLASGSG-DTT--VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE  173 (500)
Q Consensus       102 ~~~~gh~~~V~~-----~~~sp~~~~lat~~~-d~~--i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~  173 (500)
                      ..+..|......     .+|+|||++||.++. ++.  |.+||+.+++......++...+..+.|+|||+.|+.++.++.
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~  103 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN  103 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence            345556655555     789999999999887 664  888899888776555566666657789999999999999999


Q ss_pred             EEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEE----------------------EeCCCcEEEEECCCCe
Q 010816          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS----------------------ASKDGDARIWDVSLRK  231 (500)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s----------------------~s~dg~v~iwd~~~~~  231 (500)
                      |.+||+.+++... ....+...+....|.   .+.++..++.                      .+.+..|.+||+.+++
T Consensus       104 l~~~d~~~g~~~~-~~~~~~~~~~~~~~~---~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          104 LMRVDLATLEENV-VYQVPAEWVGYGTWV---ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             EEEEETTTCCEEE-EEECCTTEEEEEEEE---ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             EEEEECCCCccee-eeechhhccccccee---ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence            9999999886432 222333334333332   1234444442                      2345789999999886


Q ss_pred             EEEEecCccccEEEEEeCC-CCe-EEEEeC------CCeEEEEeCCCCeeEEEeecCC--ceEEEEEecCcceeeecccc
Q 010816          232 CVICLSGHTLAVTCVKWGG-DGV-IYTGSQ------DCTIKVWETTQGKLIRELKGHG--HWVNSLALSTEYALRTGAFD  301 (500)
Q Consensus       232 ~~~~~~~h~~~v~~~~~~~-~~~-l~t~~~------dg~i~lwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~  301 (500)
                      ... +..+...+..+.|+| ++. |+....      ...|.++|...+.. +.+..+.  ..+..+.++|+.        
T Consensus       180 ~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg--------  249 (388)
T 3pe7_A          180 STV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDG--------  249 (388)
T ss_dssp             EEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTS--------
T ss_pred             eEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCC--------
Confidence            543 334556788999999 874 544444      33788888765543 3333333  356677777763        


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE-eeC----CCeEEEEcCCCCCCCc-eeeecccCc---EEEEEECCCC
Q 010816          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-GSD----DFTMFLWEPAVSKQPK-TRMTGHQQL---VNHVYFSPDG  372 (500)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~s~----d~~v~~wd~~~~~~~~-~~~~~h~~~---v~~l~~sp~g  372 (500)
                                                  ..++. +..    +..|++||+....... ..+.++...   ...++|+|||
T Consensus       250 ----------------------------~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg  301 (388)
T 3pe7_A          250 ----------------------------SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG  301 (388)
T ss_dssp             ----------------------------SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE
T ss_pred             ----------------------------CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC
Confidence                                        22322 221    1249999986543211 111111000   1113689999


Q ss_pred             CEEEEE---------eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816          373 QWVASA---------SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL  443 (500)
Q Consensus       373 ~~lasg---------s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  443 (500)
                      +.|+..         ..+..|++||+.+++... +..|......+                ..+........+|+|||+.
T Consensus       302 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~----------------~~~~~~~~~~~~~spDg~~  364 (388)
T 3pe7_A          302 SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR-VARHDTSWKVF----------------EGDRQVTHPHPSFTPDDKQ  364 (388)
T ss_dssp             CCC------------CCCCEEEEEETTTTEEEE-EEECCCCCCCB----------------TTBSSTTCCCCEECTTSSE
T ss_pred             CcceeEeeeccccccCCCCEEEEEeccCCceEE-eccccCccccc----------------ccccccCCCCccCCCCCCE
Confidence            988754         446689999998876533 33222200000                0000001223478999998


Q ss_pred             EEEEE-CCCcEEEEEC
Q 010816          444 LLSGS-KDSTLKVWDI  458 (500)
Q Consensus       444 l~s~s-~d~~v~iwd~  458 (500)
                      |+.++ .++...||.+
T Consensus       365 l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          365 ILFTSDVHGKPALYLA  380 (388)
T ss_dssp             EEEEECTTSSCEEEEE
T ss_pred             EEEEecCCCceeEEEE
Confidence            88766 4677777754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=4.3e-17  Score=157.18  Aligned_cols=289  Identities=16%  Similarity=0.135  Sum_probs=181.9

Q ss_pred             EeCCCCceeEEecCCCCC-----EEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816          135 WDLNTQTPMFKCTGHKNW-----VLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (500)
Q Consensus       135 wd~~~~~~~~~~~~h~~~-----v~~v~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (500)
                      .|..++..+..+..+...     +.+++|+|||++|+.....   ..|.+||+.+++... ...++......+.|+|   
T Consensus        15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~sp---   90 (396)
T 3c5m_A           15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFIST---   90 (396)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECT---
T ss_pred             ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECC---
Confidence            366677666666554333     6788999999998876543   478888988776432 1222222222355655   


Q ss_pred             CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEE-------------------EEeCCCCe-EEEE-----eCCC
Q 010816          207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC-------------------VKWGGDGV-IYTG-----SQDC  261 (500)
Q Consensus       207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~-l~t~-----~~dg  261 (500)
                        +++.++.++.++.+++||+..++.......+......                   +.|++++. ++.+     ..+.
T Consensus        91 --dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~  168 (396)
T 3c5m_A           91 --DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC  168 (396)
T ss_dssp             --TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred             --CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence              5678889999999999999888765555544333222                   23455542 2211     4567


Q ss_pred             eEEEEeCCCCeeEEEeecCCceEEEEEecC-cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC--
Q 010816          262 TIKVWETTQGKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD--  338 (500)
Q Consensus       262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d--  338 (500)
                      .|.+||+.+++..... .+...+..+.++| +.                                    ..++..+.+  
T Consensus       169 ~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg------------------------------------~~l~~~~~~~~  211 (396)
T 3c5m_A          169 RLIKVDIETGELEVIH-QDTAWLGHPIYRPFDD------------------------------------STVGFCHEGPH  211 (396)
T ss_dssp             EEEEEETTTCCEEEEE-EESSCEEEEEEETTEE------------------------------------EEEEEEECSCS
T ss_pred             eEEEEECCCCcEEeec-cCCcccccceECCCCC------------------------------------CEEEEEecCCC
Confidence            8999999887755443 3455667777776 32                                    223332222  


Q ss_pred             ----CeEEEEcCCCCCCCceeeecc--cCcEEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCceEEEEeCCcccEEE
Q 010816          339 ----FTMFLWEPAVSKQPKTRMTGH--QQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTTGKFVAVFRGHVGPVYQ  407 (500)
Q Consensus       339 ----~~v~~wd~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~lasgs~D-----g~i~lwd~~~~~~~~~~~~h~~~v~~  407 (500)
                          ..|.+||.....  ...+..+  ...+..++|+|||++|+.++.+     +.|++||+.+++........ + .  
T Consensus       212 ~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~--  285 (396)
T 3c5m_A          212 DLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-C--  285 (396)
T ss_dssp             SSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-E--
T ss_pred             CCCCceEEEEECCCCc--eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-C--
Confidence                457788864322  1222222  2357889999999988777654     45999999888654322111 0 0  


Q ss_pred             EEeeeeeeecCCCCceeeeeccccceeeEEcC-CCCEEEEEE----------------CCCcEEEEECCCccccccccCc
Q 010816          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGS----------------KDSTLKVWDIRTQKLKQDLPGH  470 (500)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~s----------------~d~~v~iwd~~~~~~~~~~~~h  470 (500)
                                               . ..|+| +|+++++++                .+..|++||+.+++.. .+..+
T Consensus       286 -------------------------~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~  338 (396)
T 3c5m_A          286 -------------------------S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH  338 (396)
T ss_dssp             -------------------------E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC
T ss_pred             -------------------------C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC
Confidence                                     0 26789 999888765                3478999999887653 34444


Q ss_pred             cc-----------CEEEEEEcCCCCEEEEEeC-CCcEEEec
Q 010816          471 AD-----------EVFAVDWSPDGEKVASGGK-DRVLKLWM  499 (500)
Q Consensus       471 ~~-----------~V~~l~~s~dg~~l~s~~~-D~~v~iW~  499 (500)
                      ..           .+..++|+|||++|+.++. ++...||.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          339 STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence            43           2566789999999987765 56666663

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.74  E-value=2.1e-16  Score=150.62  Aligned_cols=154  Identities=11%  Similarity=0.075  Sum_probs=106.1

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCC-CCceeEEec--CCCCCEEEEEEcCCCCE--EEEEe-------------
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLN-TQTPMFKCT--GHKNWVLCIAWSADGKH--LVSGS-------------  169 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~-~~~~~~~~~--~h~~~v~~v~~s~~~~~--l~s~~-------------  169 (500)
                      ...+..++|+|+|++|++++.+ .|.+|++. +++......  .+ +.+.+++|+|||++  ++++.             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            3457789999999999999888 99999997 665433221  11 23556899999994  55654             


Q ss_pred             CCCeEEEEeCC-CCCccccccc----CcccceEEEEeeeeecCCCCceEEEEe-CCCcEEEEECC-CCeEE--EEec--C
Q 010816          170 KAGELQCWDPQ-TGKPSGNPLS----GHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVS-LRKCV--ICLS--G  238 (500)
Q Consensus       170 ~d~~i~~wd~~-~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~-~~~~~--~~~~--~  238 (500)
                      .++.+.+|++. +++... .+.    .+...+.++.|+|     ++++++++. .++.|++||+. +++..  ..+.  .
T Consensus       117 ~~g~v~v~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~sp-----dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~  190 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEK-NVQNYEYQENTGIHGMVFDP-----TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD  190 (365)
T ss_dssp             SCCEEEEEEECTTCCEEE-EEEEEECCTTCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred             CCceEEEEccCCCCcCcc-eEeeEEeCCCCcceEEEECC-----CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC
Confidence            68999999987 354321 111    2345677888876     445566554 46799999998 66543  2232  2


Q ss_pred             ccccEEEEEeCCCC-eEEEEe-CCCeEEEEeCC
Q 010816          239 HTLAVTCVKWGGDG-VIYTGS-QDCTIKVWETT  269 (500)
Q Consensus       239 h~~~v~~~~~~~~~-~l~t~~-~dg~i~lwd~~  269 (500)
                      |...+..++|++++ .+++++ .++.|.+|++.
T Consensus       191 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence            35568899999998 466655 47899999764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=3.5e-15  Score=139.94  Aligned_cols=244  Identities=16%  Similarity=0.157  Sum_probs=168.2

Q ss_pred             cccEEEEEEcCCCCeEEEEeCC------------------------CcEEEEeCCCCceeEEec-CCCCCEEEEEEcCCC
Q 010816          108 TEAVLSVAFSPDGRQLASGSGD------------------------TTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADG  162 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d------------------------~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~  162 (500)
                      -+.+.+++++|+|+++++...+                        ++|.+||..+++.+.... ++-.....++++++|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4579999999999999888877                        479999998887765543 445678999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCCcccccc---------cCcccceEEEEeeeeecCCCCceEEEEe-CCCcEEEEECCCCeE
Q 010816          163 KHLVSGSKAGELQCWDPQTGKPSGNPL---------SGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKC  232 (500)
Q Consensus       163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~  232 (500)
                      +++++...++.|++||..........+         .++-....++++.|.    ++..+++.+ .++.|++|| ..++.
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~----~g~lyv~d~~~~~~I~~~~-~~g~~  177 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS----TGAVFVSDGYCNSRIVQFS-PSGKF  177 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT----TCCEEEEECSSCCEEEEEC-TTSCE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC----CCeEEEEeCCCCCeEEEEc-CCCCE
Confidence            988888889999999985432111111         223335567776651    345667776 689999999 55666


Q ss_pred             EEEecC----------ccccEEEEEeCCC-CeEE-EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccc
Q 010816          233 VICLSG----------HTLAVTCVKWGGD-GVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (500)
Q Consensus       233 ~~~~~~----------h~~~v~~~~~~~~-~~l~-t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (500)
                      +..+..          +......++++++ +.|+ +...++.|++||..+|+.+..+...                    
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~--------------------  237 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA--------------------  237 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT--------------------
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc--------------------
Confidence            655532          2234678888887 6554 4556788999998777765544211                    


Q ss_pred             cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC------CCCE
Q 010816          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQW  374 (500)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp------~g~~  374 (500)
                                                                               .+...+..++|+|      +|+.
T Consensus       238 ---------------------------------------------------------~~~~~~~~~~~~pg~~~~~~g~~  260 (329)
T 3fvz_A          238 ---------------------------------------------------------SFGRNVFAISYIPGFLFAVNGKP  260 (329)
T ss_dssp             ---------------------------------------------------------TTTTCEEEEEEETTEEEEEECCC
T ss_pred             ---------------------------------------------------------ccCCCcceeeecCCEEEEeCCCE
Confidence                                                                     1112234455555      3433


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEe---CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC
Q 010816          375 VASASFDKSIKLWNGTTGKFVAVFR---GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS  451 (500)
Q Consensus       375 lasgs~Dg~i~lwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~  451 (500)
                      .++...+..|++||..+++.+..+.   ++......+                           +++|+|.++++...++
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~i---------------------------a~~~dG~lyvad~~~~  313 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDI---------------------------VASEDGTVYIGDAHTN  313 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEE---------------------------EECTTSEEEEEESSSC
T ss_pred             EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEE---------------------------EECCCCCEEEEECCCC
Confidence            3344456689999999999888763   333333333                           6799998888888899


Q ss_pred             cEEEEECCC
Q 010816          452 TLKVWDIRT  460 (500)
Q Consensus       452 ~v~iwd~~~  460 (500)
                      .|++|++..
T Consensus       314 ~I~~~~~~~  322 (329)
T 3fvz_A          314 TVWKFTLTE  322 (329)
T ss_dssp             CEEEEEEEE
T ss_pred             EEEEEeCCc
Confidence            999999754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=1.6e-15  Score=142.35  Aligned_cols=254  Identities=13%  Similarity=0.142  Sum_probs=175.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCC------------------------CeEEEEeCCCCCcccccccCcccceEEEEeeeee
Q 010816          150 KNWVLCIAWSADGKHLVSGSKA------------------------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH  205 (500)
Q Consensus       150 ~~~v~~v~~s~~~~~l~s~~~d------------------------~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~  205 (500)
                      -+.+.+|+++|+|+++++.+.+                        +.|.+||..+++.....-.++-....++++.|  
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~--  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT--  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT--
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC--
Confidence            3568999999999999888777                        47999999888754322223334566777654  


Q ss_pred             cCCCCceEEEEeCCCcEEEEECCCCe-EEEEe---------cCccccEEEEEeCC-CCeEEEEe--CCCeEEEEeCCCCe
Q 010816          206 LNAPCRRFVSASKDGDARIWDVSLRK-CVICL---------SGHTLAVTCVKWGG-DGVIYTGS--QDCTIKVWETTQGK  272 (500)
Q Consensus       206 ~~~~~~~~~s~s~dg~v~iwd~~~~~-~~~~~---------~~h~~~v~~~~~~~-~~~l~t~~--~dg~i~lwd~~~~~  272 (500)
                         ++..+++...++.|++||..... .+..+         .++......+++++ ++.++.+.  .++.|++|| .+|+
T Consensus       101 ---~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~  176 (329)
T 3fvz_A          101 ---DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGK  176 (329)
T ss_dssp             ---TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSC
T ss_pred             ---CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCC
Confidence               45678888889999999986542 44444         23444678899998 77666555  489999999 4555


Q ss_pred             eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC
Q 010816          273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP  352 (500)
Q Consensus       273 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~  352 (500)
                      .+..+...                                                      +..+          ..  
T Consensus       177 ~~~~~~~~------------------------------------------------------g~~~----------~~--  190 (329)
T 3fvz_A          177 FVTQWGEE------------------------------------------------------SSGS----------SP--  190 (329)
T ss_dssp             EEEEECEE------------------------------------------------------CCSS----------SC--
T ss_pred             EEEEeccC------------------------------------------------------CCCC----------CC--
Confidence            44332110                                                      0000          00  


Q ss_pred             ceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEEEEeC--CcccEEEEEeeeeeeecCCCCceeeeecc
Q 010816          353 KTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRG--HVGPVYQIRFELIYCFRYPSNFYCVVDMS  429 (500)
Q Consensus       353 ~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  429 (500)
                         ..++......++++|+ +.++++...++.|++||..+|+.+..+..  +...++.+.+..                 
T Consensus       191 ---~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-----------------  250 (329)
T 3fvz_A          191 ---RPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-----------------  250 (329)
T ss_dssp             ---CTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-----------------
T ss_pred             ---CCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-----------------
Confidence               0012234688999998 78888888899999999998998887743  444555553311                 


Q ss_pred             ccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc---cCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          430 CCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL---PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       430 ~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~---~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                          ...+..+|...++...+..|++||..+++.+..+   .++.....+++++|+|..+++...+++|++|+
T Consensus       251 ----g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          251 ----GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             ----TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             ----CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence                0011224444444555679999999999888776   36777899999999998888888999999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=1.2e-16  Score=166.82  Aligned_cols=297  Identities=13%  Similarity=0.077  Sum_probs=174.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccce-----EEEEeeeeecCCCCceEEEEeCC-------
Q 010816          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI-----TGISWEPVHLNAPCRRFVSASKD-------  219 (500)
Q Consensus       152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~s~s~d-------  219 (500)
                      ...++.|+|||++++++  |++|++||+.+++... .+.+|....     .++.|+|     ++++++.++.+       
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sp-----dg~~l~~~~~~~~~~r~~   89 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSV-FLENSTFDEFGHSINDYSISP-----DGQFILLEYNYVKQWRHS   89 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEE-EECTTTTTTCCSCCCEEEECT-----TSSEEEEEEEEEECSSSC
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEE-EEechhhhhhcccccceEECC-----CCCEEEEEECCeeeEEEc
Confidence            35689999999988886  9999999999987532 345554322     2245554     66788887776       


Q ss_pred             --CcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEee-cCCceE------------
Q 010816          220 --GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK-GHGHWV------------  284 (500)
Q Consensus       220 --g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~-~~~~~v------------  284 (500)
                        +.+.+||+.++++.. +..|...+..++|+|||..++-..|+.|++||+.+++..+... ++...+            
T Consensus        90 ~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee  168 (740)
T 4a5s_A           90 YTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (740)
T ss_dssp             EEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             cceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence              566799999988653 5677788999999999863333467899999998887554221 221111            


Q ss_pred             -----EEEEecCcce-eeeccccCCCCC-CCCHHHHHHHHHHhhhhhcCCCCcE-EE----EeeCC--CeEEEEcCCC--
Q 010816          285 -----NSLALSTEYA-LRTGAFDHTGKQ-YSSPEEMKKAALERYNKIKGNAPER-LV----SGSDD--FTMFLWEPAV--  348 (500)
Q Consensus       285 -----~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~----s~s~d--~~v~~wd~~~--  348 (500)
                           ..+.++|++. +.....+..... +..+.         ........+.. -+    .|..+  .++++||+..  
T Consensus       169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~---------~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~  239 (740)
T 4a5s_A          169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF---------YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS  239 (740)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE---------CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCC
T ss_pred             hcCCCcceEECCCCCEEEEEEEcccCCceEEEEe---------ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCC
Confidence                 2477888764 332223322110 00000         00000000000 00    11112  2688899876  


Q ss_pred             -CCC-Cceeee------cccCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCCCc----eEE--EE--eCCcccEEEE
Q 010816          349 -SKQ-PKTRMT------GHQQLVNHVYFSPDGQWVASASF----DKSIKLWNGTTGK----FVA--VF--RGHVGPVYQI  408 (500)
Q Consensus       349 -~~~-~~~~~~------~h~~~v~~l~~sp~g~~lasgs~----Dg~i~lwd~~~~~----~~~--~~--~~h~~~v~~~  408 (500)
                       ... ....+.      +|...+..++|+|||++++....    +..|++||+.+|+    +..  .+  .+|.+.+.. 
T Consensus       240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~-  318 (740)
T 4a5s_A          240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR-  318 (740)
T ss_dssp             SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS-
T ss_pred             CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc-
Confidence             421 122232      37778999999999997766543    3479999998887    211  11  223322110 


Q ss_pred             EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE-EEEC-CC--cEEEEECCCccccccccCcccCEEEEEEcCCCC
Q 010816          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL-SGSK-DS--TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE  484 (500)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~s~-d~--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~  484 (500)
                                           ......+|+|||+.|+ ..+. +|  .|++||+.+++...... ..-.|..+.+ +|++
T Consensus       319 ---------------------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~~-~d~~  375 (740)
T 4a5s_A          319 ---------------------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIEA-LTSD  375 (740)
T ss_dssp             ---------------------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEEE-ECSS
T ss_pred             ---------------------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEEE-EeCC
Confidence                                 0011237899999887 6664 33  68888988766554333 3445655432 3466


Q ss_pred             EEEEEe
Q 010816          485 KVASGG  490 (500)
Q Consensus       485 ~l~s~~  490 (500)
                      .|+..+
T Consensus       376 ~i~f~~  381 (740)
T 4a5s_A          376 YLYYIS  381 (740)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            655443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=3.3e-15  Score=141.28  Aligned_cols=270  Identities=12%  Similarity=0.123  Sum_probs=169.4

Q ss_pred             ccEEEEEEcCCCCeEEEEe---------CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---C--eE
Q 010816          109 EAVLSVAFSPDGRQLASGS---------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---G--EL  174 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~---------~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~--~i  174 (500)
                      ..+..+++  ||+++|...         .++.|.+||+.+++... +    ..+..+.|+|||++|+.++.+   +  .|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            34566777  888887642         26679999998876532 3    468899999999999987754   3  37


Q ss_pred             EEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeC---------------------------CCcEEEEEC
Q 010816          175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK---------------------------DGDARIWDV  227 (500)
Q Consensus       175 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~---------------------------dg~v~iwd~  227 (500)
                      .+||+.+++...  +..+.. +..+.|+|     +++.++.++.                           ...|++||+
T Consensus        88 ~~~~~~~g~~~~--l~~~~~-~~~~~wsp-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~  159 (347)
T 2gop_A           88 WVADLETLSSKK--ILEAKN-IRSLEWNE-----DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT  159 (347)
T ss_dssp             EEEETTTTEEEE--EEEESE-EEEEEECT-----TSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred             EEEECCCCceEE--EEcCCC-ccceeECC-----CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence            777887765432  222233 78888876     4556776653                           257899999


Q ss_pred             CCCeEEEEecCccccEEEEEeCCCCeEEEEeCCC-------eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccc
Q 010816          228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC-------TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (500)
Q Consensus       228 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg-------~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (500)
                      .+++.+..+.. . .+..+.|++++.++++..+.       ...+|.+.+++. ..+..+ ..+..+  +|+        
T Consensus       160 ~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spd--------  225 (347)
T 2gop_A          160 ESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSD--------  225 (347)
T ss_dssp             TTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EEC--------
T ss_pred             CCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCC--------
Confidence            88876344433 3 67788999999555555432       334443334443 333222 223222  332        


Q ss_pred             cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC--------CCeEEEEcCCCCCCCceeeecccCcEEE-EEECCC
Q 010816          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--------DFTMFLWEPAVSKQPKTRMTGHQQLVNH-VYFSPD  371 (500)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~--------d~~v~~wd~~~~~~~~~~~~~h~~~v~~-l~~sp~  371 (500)
                                                  +..++..+.        ...|.+||   .........++...+.. +.|+ |
T Consensus       226 ----------------------------g~~l~~~~~~~~~~~~~~~~l~~~d---~~~~~~l~~~~~~~~~~~~~~s-d  273 (347)
T 2gop_A          226 ----------------------------GERILLYGKPEKKYMSEHNKLYIYD---GKEVMGILDEVDRGVGQAKIKD-G  273 (347)
T ss_dssp             ----------------------------SSCEEEEECCSSSCCCSSCEEEEEC---SSCEEESSTTCCSEEEEEEEET-T
T ss_pred             ----------------------------CCEEEEEEccccCCccccceEEEEC---CCceEeccccCCcccCCccEEc-C
Confidence                                        223444432        24688887   22223333456677886 9999 8


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC
Q 010816          372 GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS  451 (500)
Q Consensus       372 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~  451 (500)
                      | ++++++.|+.++|| +.+++....+ .+.+.+..+                           +|+|  .++++++.++
T Consensus       274 g-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~---------------------------~~s~--~~~~~~~~~~  321 (347)
T 2gop_A          274 K-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGF---------------------------DVDE--IVVYLKETAT  321 (347)
T ss_dssp             E-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEE---------------------------EESS--SEEEEEECSS
T ss_pred             c-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEee---------------------------eeeC--cEEEEEcCCC
Confidence            8 99999999999999 8766654333 334444443                           5678  6777777776


Q ss_pred             cE-EEEECCCccccccccCcccC
Q 010816          452 TL-KVWDIRTQKLKQDLPGHADE  473 (500)
Q Consensus       452 ~v-~iwd~~~~~~~~~~~~h~~~  473 (500)
                      .. +||.+. ++ ...+..|+..
T Consensus       322 ~~~~l~~~~-g~-~~~lt~~n~~  342 (347)
T 2gop_A          322 RLRELFTWD-GE-EKQLTDYNDP  342 (347)
T ss_dssp             SCCEEEEES-SS-EEECCCTTST
T ss_pred             ChHHheEeC-Cc-EEEeccccHh
Confidence            54 777765 44 3446666543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=1.7e-14  Score=132.48  Aligned_cols=240  Identities=15%  Similarity=0.195  Sum_probs=165.1

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec------CCCCCEEEEEE-cCCCCEEEEEeC-CCeEEE
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAW-SADGKHLVSGSK-AGELQC  176 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~------~h~~~v~~v~~-s~~~~~l~s~~~-d~~i~~  176 (500)
                      .+|-....+++++|+++++++...++.|.+||.. +..+..+.      +|...+..+++ .+++.++++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            4667789999999999988888889999999987 44444442      34467899999 567766666543 899999


Q ss_pred             EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec--CccccEEEEEeCCCCeE
Q 010816          177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGVI  254 (500)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~l  254 (500)
                      || .+++........+.....++.+.|     ++..+++...++.|.+||.. ++.+..+.  ++...+..+++++++.+
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDN-----KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI  177 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECT-----TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeC-----CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE
Confidence            99 455543222222334566777654     44567777778999999964 44444443  44556889999998876


Q ss_pred             EEE-eCCCeEEEEeCCCCeeEEEeecCC--ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816          255 YTG-SQDCTIKVWETTQGKLIRELKGHG--HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (500)
Q Consensus       255 ~t~-~~dg~i~lwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (500)
                      +.+ ..++.|++||. +++.+..+..+.  .....++++++                                    +..
T Consensus       178 ~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~------------------------------------G~l  220 (286)
T 1q7f_A          178 FISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSN------------------------------------GEI  220 (286)
T ss_dssp             EEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTT------------------------------------CCE
T ss_pred             EEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCC------------------------------------CCE
Confidence            655 56899999997 455565554332  34556665543                                    345


Q ss_pred             EEEeeCCC-eEEEEcCCCCCCCceeeeccc--CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816          332 LVSGSDDF-TMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFDKSIKLWNGTTG  392 (500)
Q Consensus       332 ~~s~s~d~-~v~~wd~~~~~~~~~~~~~h~--~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~  392 (500)
                      +++...++ .|.+||...  .....+..+.  ..+.+++++|+|+++++ +.|+.|++|++...
T Consensus       221 ~v~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          221 LIADNHNNFNLTIFTQDG--QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEECSSSCEEEEECTTS--CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEeCCCCEEEEEECCCC--CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            66666675 999999532  2223333332  34789999999987777 67999999997653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=9.6e-16  Score=158.30  Aligned_cols=291  Identities=12%  Similarity=0.039  Sum_probs=183.8

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCCcccccccCcccceE---------EEEeeeeecCCCCce-E
Q 010816          146 CTGHKNWVLCIAWSADGKHLVSG--SKAGELQCWDPQTGKPSGNPLSGHKKWIT---------GISWEPVHLNAPCRR-F  213 (500)
Q Consensus       146 ~~~h~~~v~~v~~s~~~~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~~~~~-~  213 (500)
                      +.+|...+..++|+++.-++++.  +.++...||....+.... .+..+...+.         ...|..   ++++++ +
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~---SPDg~~~l   94 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE-SALPAPWNVRNRVFEYSGFPWAGVP---RPAGGPLL   94 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE-ESSCTTCCBCCCGGGTCCCCEEEEC---CSSSSCEE
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc-eeCCCCccccccccccCCccceeee---ecCCCeEE
Confidence            45788899999999886666666  568899999864333222 2344444443         444431   124556 5


Q ss_pred             EEEeC-CCcEEEEECC--CCeEEEEecC-----ccccEEEEEeCCCC-eEEEEeCC----------CeEEEEeCCC----
Q 010816          214 VSASK-DGDARIWDVS--LRKCVICLSG-----HTLAVTCVKWGGDG-VIYTGSQD----------CTIKVWETTQ----  270 (500)
Q Consensus       214 ~s~s~-dg~v~iwd~~--~~~~~~~~~~-----h~~~v~~~~~~~~~-~l~t~~~d----------g~i~lwd~~~----  270 (500)
                      +.++. +..|+++++.  .......+..     |...+.+++|++|| .|++++.|          ..|++||+.+    
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  174 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA  174 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred             EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence            54443 5667777765  2033344544     67788999999998 46667666          5899999987    


Q ss_pred             --CeeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC--------C
Q 010816          271 --GKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD--------F  339 (500)
Q Consensus       271 --~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d--------~  339 (500)
                        ++. ..+. .+...+..++++|+.                                    ..++..+.+        .
T Consensus       175 ~~~~~-~~l~~~~~~~~~~~~~SpDG------------------------------------~~la~~~~~~~~~~~~~~  217 (662)
T 3azo_A          175 DRSAV-RELSDDAHRFVTGPRLSPDG------------------------------------RQAVWLAWDHPRMPWEGT  217 (662)
T ss_dssp             CGGGS-EESSCSCSSEECCCEECTTS------------------------------------SEEEEEEECTTCCTTTCE
T ss_pred             cCCce-eEEEecCCCcccCceECCCC------------------------------------CEEEEEECCCCCCCCCCc
Confidence              544 4444 445566677777753                                    345555433        3


Q ss_pred             eEEEEcCCCCC---CCceeeecccCcEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCceEEEEeCCcccEEEEEeeeee
Q 010816          340 TMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY  414 (500)
Q Consensus       340 ~v~~wd~~~~~---~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~  414 (500)
                      .|++||+....   .......+|...+..++|+|||+++++++.|+  .|++||+.+++......++... ...      
T Consensus       218 ~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~p------  290 (662)
T 3azo_A          218 ELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF-AGP------  290 (662)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS-SCC------
T ss_pred             EEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc-cCc------
Confidence            79999976322   22333345578899999999999888888888  6777777677654433322110 000      


Q ss_pred             eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEE--ECCCccccccccCcccCEEEE-EEcCCCCEEEEEeC
Q 010816          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW--DIRTQKLKQDLPGHADEVFAV-DWSPDGEKVASGGK  491 (500)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iw--d~~~~~~~~~~~~h~~~V~~l-~~s~dg~~l~s~~~  491 (500)
                                  ........++|+|+++++++++. +.++||  |+.+++ ...+..|.+.+..+ +++++.-.+++++.
T Consensus       291 ------------~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~  356 (662)
T 3azo_A          291 ------------LWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASP  356 (662)
T ss_dssp             ------------CCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEET
T ss_pred             ------------cccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCC
Confidence                        00000123477899999999998 999999  655555 46677787777777 55544444556666


Q ss_pred             CCcEEEe
Q 010816          492 DRVLKLW  498 (500)
Q Consensus       492 D~~v~iW  498 (500)
                      +....+|
T Consensus       357 ~~~~~i~  363 (662)
T 3azo_A          357 RTAYEVV  363 (662)
T ss_dssp             TEEEEEE
T ss_pred             CCCCEEE
Confidence            6655555

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.71  E-value=4.2e-16  Score=150.20  Aligned_cols=294  Identities=11%  Similarity=0.019  Sum_probs=170.2

Q ss_pred             cEEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816          110 AVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d---~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~  186 (500)
                      .+.+++|+|||++||.....   ..|.+||+.+++......++......+.|+|||++|+.++.++.|.+||+.+++...
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            36678999999998877543   468888998876543322332223347899999999999999999999998876432


Q ss_pred             ccccCcccceEE---EEeee-----------eecCCCCceEEEE-----eCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 010816          187 NPLSGHKKWITG---ISWEP-----------VHLNAPCRRFVSA-----SKDGDARIWDVSLRKCVICLSGHTLAVTCVK  247 (500)
Q Consensus       187 ~~~~~~~~~v~~---~~~~~-----------~~~~~~~~~~~s~-----s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~  247 (500)
                       ....+..+...   +.+..           ....++++.++..     ..+..|++||+.+++..... .+...+..+.
T Consensus       117 -~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~  194 (396)
T 3c5m_A          117 -IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI  194 (396)
T ss_dssp             -EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred             -EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence             12222222211   11100           0111222233222     35668999999887765443 4566788999


Q ss_pred             eCC-CCe-EEEEeCC------CeEEEEeCCCCeeEEEeecC-CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816          248 WGG-DGV-IYTGSQD------CTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (500)
Q Consensus       248 ~~~-~~~-l~t~~~d------g~i~lwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (500)
                      |++ ++. |+..+.+      ..|.+||+..++........ ...+..+.++|+.                         
T Consensus       195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg-------------------------  249 (396)
T 3c5m_A          195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDG-------------------------  249 (396)
T ss_dssp             EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTS-------------------------
T ss_pred             ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCC-------------------------
Confidence            999 563 5554433      46888898665433322211 3356667777653                         


Q ss_pred             HhhhhhcCCCCcEEEEeeCC-----CeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEe-------------
Q 010816          319 ERYNKIKGNAPERLVSGSDD-----FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASAS-------------  379 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~s~d-----~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs-------------  379 (500)
                                 ..++..+.+     +.|++||+.....  ..+..... .. +.|+| ||+++++++             
T Consensus       250 -----------~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          250 -----------SAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             -----------SCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECCS-EE-EEEECSSSSEEEEEECCC----------
T ss_pred             -----------CEEEEEecCCCCccceEEEEECCCCCe--EEeeeCCC-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence                       234433322     4599999764432  22222222 33 88999 999888765             


Q ss_pred             ---CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEE
Q 010816          380 ---FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKV  455 (500)
Q Consensus       380 ---~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~i  455 (500)
                         .++.|++||+.+++... +..+...+..  +              ..+........+|+|+|+.|+.++. ++...|
T Consensus       315 ~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~--~--------------~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l  377 (396)
T 3c5m_A          315 NIENDPFLYVLNTKAKSAQK-LCKHSTSWDV--L--------------DGDRQITHPHPSFTPNDDGVLFTSDFEGVPAI  377 (396)
T ss_dssp             CCCCCCEEEEEETTTTBCCE-EEECCCCCCC--B--------------TTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred             ccCCCCcEEEEecccCceEE-ccCCCCcccc--c--------------cccccCCCCCceEccCCCeEEEEecCCCCceE
Confidence               34789999998876432 2222210000  0              0000001122368999998887775 455555


Q ss_pred             E--ECCCcc
Q 010816          456 W--DIRTQK  462 (500)
Q Consensus       456 w--d~~~~~  462 (500)
                      |  ++.+++
T Consensus       378 ~~~~~~~~~  386 (396)
T 3c5m_A          378 YIADVPESY  386 (396)
T ss_dssp             EEEECCTTC
T ss_pred             EEEEEcccc
Confidence            5  444443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=2e-14  Score=131.97  Aligned_cols=233  Identities=14%  Similarity=0.229  Sum_probs=160.9

Q ss_pred             cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec------CccccEEEEEe-CCCCeEEEEeC--CCe
Q 010816          192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS------GHTLAVTCVKW-GGDGVIYTGSQ--DCT  262 (500)
Q Consensus       192 ~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~------~h~~~v~~~~~-~~~~~l~t~~~--dg~  262 (500)
                      +-....++++.+     ++..+++.+.++.|++||.. ++.+..+.      ++...+..+++ .+++.++.+..  ++.
T Consensus        28 ~~~~p~~v~~~~-----~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~  101 (286)
T 1q7f_A           28 QFTEPSGVAVNA-----QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ  101 (286)
T ss_dssp             CBSCEEEEEECT-----TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             ccCCCceEEECC-----CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence            334456666654     34567777889999999987 55555443      34456788999 57787777664  899


Q ss_pred             EEEEeCCCCeeEEEeec-CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816          263 IKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (500)
Q Consensus       263 i~lwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v  341 (500)
                      |++|| .+++.+..+.. +......++++++                                    +..+++...++.|
T Consensus       102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~------------------------------------g~l~v~~~~~~~i  144 (286)
T 1q7f_A          102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNK------------------------------------GRIIVVECKVMRV  144 (286)
T ss_dssp             EEEEC-TTSCEEEEECTTTCSCEEEEEECTT------------------------------------SCEEEEETTTTEE
T ss_pred             EEEEC-CCCcEEEEecCccCCCceEEEEeCC------------------------------------CCEEEEECCCCEE
Confidence            99999 56776665532 2334566665543                                    2356666778899


Q ss_pred             EEEcCCCCCCCceeee--cccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCc--ccEEEEEeeeeeeec
Q 010816          342 FLWEPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV--GPVYQIRFELIYCFR  417 (500)
Q Consensus       342 ~~wd~~~~~~~~~~~~--~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~  417 (500)
                      ++||...  .....+.  ++...+..++++|+|+++++.+.++.|++||. +++.+..+..+.  .....          
T Consensus       145 ~~~~~~g--~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~----------  211 (286)
T 1q7f_A          145 IIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIG----------  211 (286)
T ss_dssp             EEECTTS--CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEE----------
T ss_pred             EEEcCCC--CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcE----------
Confidence            9999542  2222222  34456899999999998888888999999997 455555554321  22222          


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCC-cEEEEECCCccccccccCcc--cCEEEEEEcCCCCEEEEEeCCCc
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS-TLKVWDIRTQKLKQDLPGHA--DEVFAVDWSPDGEKVASGGKDRV  494 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~-~v~iwd~~~~~~~~~~~~h~--~~V~~l~~s~dg~~l~s~~~D~~  494 (500)
                                       ++++++|+++++...++ .|++||.. ++.+..+..+.  ..+.+++++|+|+.+++ +.|++
T Consensus       212 -----------------i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~  272 (286)
T 1q7f_A          212 -----------------VGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYR  272 (286)
T ss_dssp             -----------------EEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTE
T ss_pred             -----------------EEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCe
Confidence                             36689999888888886 99999964 45555554433  34789999999987666 67999


Q ss_pred             EEEec
Q 010816          495 LKLWM  499 (500)
Q Consensus       495 v~iW~  499 (500)
                      |++|+
T Consensus       273 v~v~~  277 (286)
T 1q7f_A          273 LYIYR  277 (286)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.69  E-value=5.9e-15  Score=138.69  Aligned_cols=274  Identities=11%  Similarity=0.089  Sum_probs=177.5

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      ..|.+++|++++..++..+.++.++.|   .......+..+...+.+++|+++|++++++..++.|.+||..+++.... 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~-   81 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP-   81 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE-
Confidence            346778899998888877889999999   3445556667777889999999999888888899999999987764321 


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCC----CcEEEEECCCCeEEEEec--CccccEEEEEeCCCCeEEEEeCC--
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKD----GDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGVIYTGSQD--  260 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d----g~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~l~t~~~d--  260 (500)
                      ...+...+.++.|.|     ++..+++...+    +.|.+||...+.....+.  .+...+.++.+++++.++.++..  
T Consensus        82 ~~~~~~~~~~i~~~~-----dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  156 (333)
T 2dg1_A           82 FVSHKANPAAIKIHK-----DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY  156 (333)
T ss_dssp             EECSSSSEEEEEECT-----TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred             eeCCCCCcceEEECC-----CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence            223445678888765     34456665555    689999988776543332  23456888889888876665543  


Q ss_pred             -----CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816          261 -----CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (500)
Q Consensus       261 -----g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  335 (500)
                           +.|..+|..+++..                                                             
T Consensus       157 ~~~~~~~l~~~~~~~~~~~-------------------------------------------------------------  175 (333)
T 2dg1_A          157 STNPLGGVYYVSPDFRTVT-------------------------------------------------------------  175 (333)
T ss_dssp             TTBCCEEEEEECTTSCCEE-------------------------------------------------------------
T ss_pred             ccCCCceEEEEeCCCCEEE-------------------------------------------------------------
Confidence                 23333332221110                                                             


Q ss_pred             eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEE-EEeCCCcEEEEeCCC-CceEEEEeCCcccEEEEEeeee
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA-SASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELI  413 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~la-sgs~Dg~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~  413 (500)
                                         .+..+...+..++|+|+|+.|+ +.+.++.|++||..+ +..+..+..      .+..   
T Consensus       176 -------------------~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~------~~~~---  227 (333)
T 2dg1_A          176 -------------------PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA------TIPY---  227 (333)
T ss_dssp             -------------------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE------EEEE---
T ss_pred             -------------------EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc------eEEE---
Confidence                               0111122367899999998654 555678999999864 433322110      0000   


Q ss_pred             eeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcc------cCEEEEEEcCCCCEEE
Q 010816          414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA------DEVFAVDWSPDGEKVA  487 (500)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~------~~V~~l~~s~dg~~l~  487 (500)
                         ....        ......++++++|+++++...++.|.+||.. ++.+..+..+.      ..+.+++|+||++.|+
T Consensus       228 ---~~~~--------~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~  295 (333)
T 2dg1_A          228 ---YFTG--------HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI  295 (333)
T ss_dssp             ---ECCS--------SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred             ---ecCC--------CCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEE
Confidence               0000        0011224678999988888888999999984 44444443332      2688999999988887


Q ss_pred             EEeCC
Q 010816          488 SGGKD  492 (500)
Q Consensus       488 s~~~D  492 (500)
                      .++.+
T Consensus       296 v~~~~  300 (333)
T 2dg1_A          296 ICSND  300 (333)
T ss_dssp             EEEEC
T ss_pred             EEeCc
Confidence            66555

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.67  E-value=1.4e-12  Score=120.11  Aligned_cols=281  Identities=8%  Similarity=0.024  Sum_probs=179.5

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      ..+...+.+++++++|++.++...++.|.+||.. +... .....+...+.++++.++|.+.++...++.|..||.. ++
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~   88 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI   88 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence            3455679999999999988877778999999988 4332 2223345779999999999988887778999999986 43


Q ss_pred             cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE-EecCccccEEEEEeCCCCeEEEEe-CCC
Q 010816          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGS-QDC  261 (500)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~l~t~~-~dg  261 (500)
                      .....+......+.++.+.+     ++..+++...++.|..||. .++... ....+...+..+++.+++.++.+. .++
T Consensus        89 ~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  162 (299)
T 2z2n_A           89 IKEYTLPNPDSAPYGITEGP-----NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNN  162 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred             EEEEeCCCcCCCceeeEECC-----CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence            22111222334556666543     3456666667889999998 444332 233344567889999888777665 468


Q ss_pred             eEEEEeCCCCeeEEE-eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          262 TIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       262 ~i~lwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      .|..||. +++.... +......+..+++.++                                    +...++...++.
T Consensus       163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~------------------------------------g~l~v~~~~~~~  205 (299)
T 2z2n_A          163 AIGRITE-SGDITEFKIPTPASGPVGITKGND------------------------------------DALWFVEIIGNK  205 (299)
T ss_dssp             EEEEECT-TCCEEEEECSSTTCCEEEEEECTT------------------------------------SSEEEEETTTTE
T ss_pred             EEEEEcC-CCcEEEeeCCCCCCcceeEEECCC------------------------------------CCEEEEccCCce
Confidence            9999998 6655432 2222333445554432                                    234555556788


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCC
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYP  419 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~  419 (500)
                      |..||. ...........+...+.+++++++|++.++...++.|..||. +++.... +..+...+..            
T Consensus       206 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~------------  271 (299)
T 2z2n_A          206 IGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHG------------  271 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEE------------
T ss_pred             EEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccce------------
Confidence            999987 332111112234467899999999997777667889999998 4543221 1122222222            


Q ss_pred             CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc
Q 010816          420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ  461 (500)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~  461 (500)
                                     +++ ++|++.++.+ .+.+..++.+++
T Consensus       272 ---------------i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          272 ---------------ICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             ---------------EEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             ---------------EEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence                           256 7787776655 566777776554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.67  E-value=2.5e-14  Score=135.17  Aligned_cols=254  Identities=11%  Similarity=0.133  Sum_probs=163.6

Q ss_pred             CCEEEEEEcCCCCEEEEEe---------CCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCC--
Q 010816          151 NWVLCIAWSADGKHLVSGS---------KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD--  219 (500)
Q Consensus       151 ~~v~~v~~s~~~~~l~s~~---------~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d--  219 (500)
                      ..+..+++  ||+.++...         .++.|.+||+.+++...  +    ..+..+.|+|     ++++++..+.+  
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--l----~~~~~~~~Sp-----Dg~~la~~~~~~~   81 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--I----ENATMPRISP-----DGKKIAFMRANEE   81 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--E----ESCEEEEECT-----TSSEEEEEEEETT
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--c----ccCCCeEECC-----CCCEEEEEEeccC
Confidence            34667777  888877542         36689999998876422  2    4466778876     55677766643  


Q ss_pred             -C--cEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeC---------------------------CCeEEEEeC
Q 010816          220 -G--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQ---------------------------DCTIKVWET  268 (500)
Q Consensus       220 -g--~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~---------------------------dg~i~lwd~  268 (500)
                       +  .|++||+..++.......+.  +.++.|++|+. |+.++.                           ...|.+||+
T Consensus        82 ~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~  159 (347)
T 2gop_A           82 KKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT  159 (347)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred             CCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence             2  47888988877655444333  89999999874 555543                           257899999


Q ss_pred             CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC---------C
Q 010816          269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---------F  339 (500)
Q Consensus       269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d---------~  339 (500)
                      .+++.++.+.. . .+..+.++++.                                     .+++++.+         .
T Consensus       160 ~~~~~~~~l~~-~-~~~~~~~spdg-------------------------------------~~~~~~~~~~~~~~~~~~  200 (347)
T 2gop_A          160 ESEEVIEEFEK-P-RFSSGIWHRDK-------------------------------------IVVNVPHREIIPQYFKFW  200 (347)
T ss_dssp             TTTEEEEEEEE-E-TTCEEEEETTE-------------------------------------EEEEEECCCSSCCSSCCE
T ss_pred             CCCeEEeeecC-C-CcccccCCCCe-------------------------------------EEEEEecccccccccccc
Confidence            88876454443 2 56667777654                                     23333222         1


Q ss_pred             eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC--------CcEEEEeCCCCceEEEEeCCcccEEEEEee
Q 010816          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD--------KSIKLWNGTTGKFVAVFRGHVGPVYQIRFE  411 (500)
Q Consensus       340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D--------g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  411 (500)
                      .|.++|   .. ....+..+ ..+..+  +|||++|+.++.+        ..|++||  +++......+|...+..    
T Consensus       201 ~l~~~d---~~-~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~----  267 (347)
T 2gop_A          201 DIYIWE---DG-KEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQ----  267 (347)
T ss_dssp             EEEEEE---TT-EEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEE----
T ss_pred             cEEEeC---CC-ceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCC----
Confidence            344444   22 22333334 445444  9999999887754        3688888  56554444444444432    


Q ss_pred             eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~  491 (500)
                                            .+.|+ ++ ++++++.++.++|| +.+++... +..+...|.+++|+|  ..+++++.
T Consensus       268 ----------------------~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~  319 (347)
T 2gop_A          268 ----------------------AKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKET  319 (347)
T ss_dssp             ----------------------EEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEEC
T ss_pred             ----------------------ccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcC
Confidence                                  12678 88 99999999999999 87555433 334567899999999  67777777


Q ss_pred             CCcE-EEec
Q 010816          492 DRVL-KLWM  499 (500)
Q Consensus       492 D~~v-~iW~  499 (500)
                      +++. .||.
T Consensus       320 ~~~~~~l~~  328 (347)
T 2gop_A          320 ATRLRELFT  328 (347)
T ss_dssp             SSSCCEEEE
T ss_pred             CCChHHheE
Confidence            7654 6663

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.65  E-value=2.2e-14  Score=148.66  Aligned_cols=273  Identities=14%  Similarity=0.044  Sum_probs=167.5

Q ss_pred             CCCCeEEEEeCCC---cEEEE--eCCCCceeEEe------cCCCCCEEEEEEcCCCCEEE-----EEeCCCeEEEEeCCC
Q 010816          118 PDGRQLASGSGDT---TVRLW--DLNTQTPMFKC------TGHKNWVLCIAWSADGKHLV-----SGSKAGELQCWDPQT  181 (500)
Q Consensus       118 p~~~~lat~~~d~---~i~iw--d~~~~~~~~~~------~~h~~~v~~v~~s~~~~~l~-----s~~~d~~i~~wd~~~  181 (500)
                      |+|++++....++   .-.||  +..++.....+      .+|...+..++|||||++||     +|+.+..|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            6788777665433   34455  44344332222      24666799999999999998     455567899999999


Q ss_pred             CCcc-cccccCcccceEEEEeeeeecCCCCceEEEEeCCCc-------------EEEEECCCCe----EEEEecCccccE
Q 010816          182 GKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD-------------ARIWDVSLRK----CVICLSGHTLAV  243 (500)
Q Consensus       182 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~-------------v~iwd~~~~~----~~~~~~~h~~~v  243 (500)
                      |+.. ...+....  ..++.|+|     +++.|+.++.|..             |++|++.++.    ++.....|...+
T Consensus       157 g~~~~~~~~~~~~--~~~~~wsp-----Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~  229 (695)
T 2bkl_A          157 GEWSKVDVIEGGK--YATPKWTP-----DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF  229 (695)
T ss_dssp             CCBCSSCCBSCCT--TCCCEECT-----TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE
T ss_pred             CCCcCCcccCccc--ccceEEec-----CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEE
Confidence            8754 22222111  15678876     5568888888776             9999998765    444444566778


Q ss_pred             EEEEeCCCCe-EEEEeCCC----eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816          244 TCVKWGGDGV-IYTGSQDC----TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (500)
Q Consensus       244 ~~~~~~~~~~-l~t~~~dg----~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (500)
                      ..+.|++||. |+.++.++    .|.+||..++... .+..+...+....++ +                          
T Consensus       230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~~-~--------------------------  281 (695)
T 2bkl_A          230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHAW-K--------------------------  281 (695)
T ss_dssp             EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEEE-T--------------------------
T ss_pred             EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEec-C--------------------------
Confidence            8999999984 55555444    6777776555433 333222222222221 1                          


Q ss_pred             HhhhhhcCCCCcEEEEee---CCCeEEEEcCCCCCCC-ceeeecc--cCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-C
Q 010816          319 ERYNKIKGNAPERLVSGS---DDFTMFLWEPAVSKQP-KTRMTGH--QQLVNHVYFSPDGQWVASASFDKSIKLWNGT-T  391 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~s---~d~~v~~wd~~~~~~~-~~~~~~h--~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~-~  391 (500)
                                +..++.+.   .++.|.+||+...... ...+..+  ...+..++|+ ++.++++...|+..+||... +
T Consensus       282 ----------g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~  350 (695)
T 2bkl_A          282 ----------DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK  350 (695)
T ss_dssp             ----------TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             ----------CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence                      22233333   3578999997654310 1233333  4457888888 77888999999998888654 3


Q ss_pred             CceEEEEeCC-cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE----CCCcEEEEECCCccc
Q 010816          392 GKFVAVFRGH-VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS----KDSTLKVWDIRTQKL  463 (500)
Q Consensus       392 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s----~d~~v~iwd~~~~~~  463 (500)
                      |+....+..+ .+.+                           ..++++|++..++...    ..++|++||+.+++.
T Consensus       351 g~~~~~l~~~~~~~v---------------------------~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          351 GKPVRTVQLPGVGAA---------------------------SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             CCEEEECCCSSSSEE---------------------------CCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCeeEEecCCCCeEE---------------------------EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            4444433332 2222                           2225678887666332    347899999987653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.64  E-value=3.7e-14  Score=134.51  Aligned_cols=252  Identities=13%  Similarity=0.132  Sum_probs=156.0

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCceeEEecCC------CCCEEEEEEcCCCCEEEE
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH------KNWVLCIAWSADGKHLVS  167 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~----------~d~~i~iwd~~~~~~~~~~~~h------~~~v~~v~~s~~~~~l~s  167 (500)
                      +..+..+  .++|+|||++|++++          .+++|.+||..+.+.+..+...      ......++|+|||++|++
T Consensus        47 i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v  124 (361)
T 2oiz_A           47 VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVL  124 (361)
T ss_dssp             EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEE
T ss_pred             ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEE
Confidence            3334455  899999999999886          3678999999988877665422      345677999999999998


Q ss_pred             EeC--CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEEEE------ecC
Q 010816          168 GSK--AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVIC------LSG  238 (500)
Q Consensus       168 ~~~--d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~------~~~  238 (500)
                      +..  +++|.+||+.+++.....+... . ...+.+.|.    ....+++.+.||.+.+|+... ++....      +..
T Consensus       125 ~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~----~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~  198 (361)
T 2oiz_A          125 QNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPN----RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV  198 (361)
T ss_dssp             EEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTT----SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred             ECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCC----CCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence            864  5899999999886543201111 1 111222231    125788899999999999865 443311      111


Q ss_pred             ccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCee--EEEeecCC------ceE----EEEEecCcceeeeccccCCCC
Q 010816          239 HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL--IRELKGHG------HWV----NSLALSTEYALRTGAFDHTGK  305 (500)
Q Consensus       239 h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~--~~~~~~~~------~~v----~~~~~~~~~~~~~~~~~~~~~  305 (500)
                      +..++ .+.+.+++ .++..+.++.+.++|+..+..  ...+....      .+.    ..++++++             
T Consensus       199 ~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d-------------  264 (361)
T 2oiz_A          199 KDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA-------------  264 (361)
T ss_dssp             TTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT-------------
T ss_pred             CCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC-------------
Confidence            11111 01112222 455667889999999865432  11111000      000    00122221             


Q ss_pred             CCCCHHHHHHHHHHhhhhhcCCCCcEEEEe-e----------CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCE
Q 010816          306 QYSSPEEMKKAALERYNKIKGNAPERLVSG-S----------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW  374 (500)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-s----------~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~  374 (500)
                                             +.+++.+ +          ..++|.+||....+ ....+..+.  +.+++|+|||++
T Consensus       265 -----------------------g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~-~v~~i~~~~--p~~ia~spdg~~  318 (361)
T 2oiz_A          265 -----------------------SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ-RVARIPGRD--ALSMTIDQQRNL  318 (361)
T ss_dssp             -----------------------TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE-EEEEEECTT--CCEEEEETTTTE
T ss_pred             -----------------------CCeEEEEEccCCCcccccCCCceEEEEECCCCc-EEEEEecCC--eeEEEECCCCCE
Confidence                                   1233332 2          13479999976543 344455555  899999999999


Q ss_pred             EEEEeCCCcEEEEeCCCC--ceEEEEeCCccc
Q 010816          375 VASASFDKSIKLWNGTTG--KFVAVFRGHVGP  404 (500)
Q Consensus       375 lasgs~Dg~i~lwd~~~~--~~~~~~~~h~~~  404 (500)
                      |++++. +.|.+||..++  +.+..+..+...
T Consensus       319 l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~  349 (361)
T 2oiz_A          319 MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEA  349 (361)
T ss_dssp             EEEECS-SCEEEEECSSSSCEEEEEETTSCSS
T ss_pred             EEEeCC-CeEEEEECCCCcceeeEEeccCCCC
Confidence            998887 99999999999  888876544433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.64  E-value=5.3e-12  Score=116.24  Aligned_cols=276  Identities=11%  Similarity=0.053  Sum_probs=176.6

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC
Q 010816          148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (500)
Q Consensus       148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~  227 (500)
                      .+...+.++.+.++|.+.++...++.|..||.. ++........+...+.++.+.+     ++..+++...++.|..||.
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~   85 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-----DGEVWFTENAANKIGRITK   85 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECT
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-----CCCEEEeCCCCCeEEEECC
Confidence            345678999999999988877778999999988 5533222222345566776653     3455666666788999998


Q ss_pred             CCCeEEEEecCccccEEEEEeCCCCeEEEEe-CCCeEEEEeCCCCeeEEEe-ecCCceEEEEEecCcceeeeccccCCCC
Q 010816          228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTGS-QDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGK  305 (500)
Q Consensus       228 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~-~dg~i~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (500)
                      ........+......+.++++.+++.++.+. .++.|..||. +++..... ......+..+++.++             
T Consensus        86 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~-------------  151 (299)
T 2z2n_A           86 KGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD-------------  151 (299)
T ss_dssp             TSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT-------------
T ss_pred             CCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC-------------
Confidence            6332222222344568889999888766654 5789999998 55543322 222334455554432             


Q ss_pred             CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEE
Q 010816          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK  385 (500)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~  385 (500)
                                             +...++...++.|..||. ...........+...+.+++++++|.+.++...++.|.
T Consensus       152 -----------------------g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          152 -----------------------NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIG  207 (299)
T ss_dssp             -----------------------SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             -----------------------CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence                                   234455556788999987 32211111223345688999999999877777788999


Q ss_pred             EEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccc
Q 010816          386 LWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK  464 (500)
Q Consensus       386 lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~  464 (500)
                      +||. +++.... ...+...+..                           ++++++|++.++...++.|.+||.. ++..
T Consensus       208 ~~~~-~g~~~~~~~~~~~~~~~~---------------------------i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~  258 (299)
T 2z2n_A          208 RITT-SGEITEFKIPTPNARPHA---------------------------ITAGAGIDLWFTEWGANKIGRLTSN-NIIE  258 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEE---------------------------EEECSTTCEEEEETTTTEEEEEETT-TEEE
T ss_pred             EECC-CCcEEEEECCCCCCCcee---------------------------EEECCCCCEEEeccCCceEEEECCC-CceE
Confidence            9998 6664321 1112222333                           2568899877766678899999984 4332


Q ss_pred             c-cccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816          465 Q-DLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  497 (500)
Q Consensus       465 ~-~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i  497 (500)
                      . .++.+...+.++.+ ++|+..++.+.++.+++
T Consensus       259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~  291 (299)
T 2z2n_A          259 EYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL  291 (299)
T ss_dssp             EEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred             EEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence            2 23455567899999 88887777665555554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.63  E-value=2.6e-13  Score=141.06  Aligned_cols=274  Identities=11%  Similarity=0.074  Sum_probs=171.8

Q ss_pred             CCCCeEEEEeCC-C----cEEEEeCCCCceeEEe------cCCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCC
Q 010816          118 PDGRQLASGSGD-T----TVRLWDLNTQTPMFKC------TGHKNWVLCIAWSADGKHLVSGSKAG-----ELQCWDPQT  181 (500)
Q Consensus       118 p~~~~lat~~~d-~----~i~iwd~~~~~~~~~~------~~h~~~v~~v~~s~~~~~l~s~~~d~-----~i~~wd~~~  181 (500)
                      |+|++++-...+ +    .+.+.+..++.....+      .+|...+..++|||||++||.++.++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            778777654322 1    2333343333332111      23445688999999999998766543     899999998


Q ss_pred             CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc----------------EEEEECCCCe----EEEEecCccc
Q 010816          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD----------------ARIWDVSLRK----CVICLSGHTL  241 (500)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~----------------v~iwd~~~~~----~~~~~~~h~~  241 (500)
                      ++.....+.  ...+.++.|+|     +++.|+.++.++.                |++|++.+++    .+.....|..
T Consensus       161 g~~~~~~~~--~~~~~~~~wsp-----Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~  233 (710)
T 2xdw_A          161 AKELPDVLE--RVKFSCMAWTH-----DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK  233 (710)
T ss_dssp             TEEEEEEEE--EECSCCEEECT-----TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred             CCCCccccc--CcccceEEEEe-----CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCe
Confidence            875432221  12256688876     5567888877766                9999998765    3333334566


Q ss_pred             cEEEEEeCCCCe-EEEEeC-----CCeEEEEeCCC------Ce-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCC
Q 010816          242 AVTCVKWGGDGV-IYTGSQ-----DCTIKVWETTQ------GK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS  308 (500)
Q Consensus       242 ~v~~~~~~~~~~-l~t~~~-----dg~i~lwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (500)
                      .+..+.|++|+. |+.++.     +..|.+||+.+      +. ....+..+...+... ++++                
T Consensus       234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~d----------------  296 (710)
T 2xdw_A          234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNE----------------  296 (710)
T ss_dssp             CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEE----------------
T ss_pred             EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEE-Eecc----------------
Confidence            678899999984 444443     57899999876      43 244444443333221 2221                


Q ss_pred             CHHHHHHHHHHhhhhhcCCCCcEEEEeeC----CCeEEEEcCCCCCC-CceeeecccC--cEEEEEECCCCCEEEEEeCC
Q 010816          309 SPEEMKKAALERYNKIKGNAPERLVSGSD----DFTMFLWEPAVSKQ-PKTRMTGHQQ--LVNHVYFSPDGQWVASASFD  381 (500)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~----d~~v~~wd~~~~~~-~~~~~~~h~~--~v~~l~~sp~g~~lasgs~D  381 (500)
                                          +..++..+.    .+.|.+||+..... ....+..|..  .+..++|++++.++++...|
T Consensus       297 --------------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          297 --------------------GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             --------------------TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             --------------------CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence                                223333332    34688999765431 1234455544  68889999888889999989


Q ss_pred             Cc--EEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-E---CCCcEEE
Q 010816          382 KS--IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-S---KDSTLKV  455 (500)
Q Consensus       382 g~--i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s---~d~~v~i  455 (500)
                      +.  |++||+.+|+.+..+..+.+.+..+                           +++|++..++.. +   ..++|++
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~---------------------------~~s~d~~~l~~~~ss~~~P~~i~~  409 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPLEVGSVVGY---------------------------SGQKKDTEIFYQFTSFLSPGIIYH  409 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECCCSSEEEEE---------------------------ECCTTCSEEEEEEECSSCCCEEEE
T ss_pred             CEEEEEEEECCCCCEEEecCCCCceEEEE---------------------------ecCCCCCEEEEEEeCCCCCCEEEE
Confidence            84  6667877787776666665544443                           457888655533 3   3478999


Q ss_pred             EECCCcc
Q 010816          456 WDIRTQK  462 (500)
Q Consensus       456 wd~~~~~  462 (500)
                      ||+.+++
T Consensus       410 ~d~~tg~  416 (710)
T 2xdw_A          410 CDLTKEE  416 (710)
T ss_dssp             EETTSSS
T ss_pred             EECCCCc
Confidence            9998766

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.61  E-value=5.3e-12  Score=125.99  Aligned_cols=315  Identities=14%  Similarity=0.050  Sum_probs=195.5

Q ss_pred             cCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCCcccccccCccc
Q 010816          117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ--TGKPSGNPLSGHKK  194 (500)
Q Consensus       117 sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~  194 (500)
                      +|.+.++++...+++|.++|..+++.+..+.. ...+..+.|+|||+++++++.|+.|.+||+.  +++.......+.  
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--  240 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--  240 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC--
Confidence            34555677778899999999999988877653 3356799999999999999999999999995  555433222221  


Q ss_pred             ceEEEEeeeeecCCCCceEE-EEeCCCcEEEEECCCCeEEEEecC----------ccc-cEEEEEeCCCC--eEEEEeCC
Q 010816          195 WITGISWEPVHLNAPCRRFV-SASKDGDARIWDVSLRKCVICLSG----------HTL-AVTCVKWGGDG--VIYTGSQD  260 (500)
Q Consensus       195 ~v~~~~~~~~~~~~~~~~~~-s~s~dg~v~iwd~~~~~~~~~~~~----------h~~-~v~~~~~~~~~--~l~t~~~d  260 (500)
                      .-..+.+++.. ..++++++ +...++++.++|..+.+.+..+.-          |.. .+..+..++++  .++....+
T Consensus       241 ~P~~ia~s~~~-~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~  319 (567)
T 1qks_A          241 EARSIETSKME-GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  319 (567)
T ss_dssp             EEEEEEECCST-TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCceeEEcccc-CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence            23455555200 01444554 455669999999999888766542          112 46677777654  35556677


Q ss_pred             CeEEEEeCCCCeeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE-EEEeeCC
Q 010816          261 CTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDD  338 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~s~d  338 (500)
                      |.|.++|..+.+.+.... ........+.++++                                    +.+ +++...+
T Consensus       320 g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pd------------------------------------gr~~~va~~~s  363 (567)
T 1qks_A          320 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGS------------------------------------HRYFITAANAR  363 (567)
T ss_dssp             TEEEEEETTCSSEEEEEEEECCSSEEEEEECTT------------------------------------SCEEEEEEGGG
T ss_pred             CeEEEEecCCCccceeeeeeccccccCceECCC------------------------------------CCEEEEEeCCC
Confidence            999999987654322111 11222333344432                                    223 4455567


Q ss_pred             CeEEEEcCCCCCCCceeee----cccCcEEEEEECCCCC-EEEEEe-CCCcEEEEeCCC-------CceEEEEeCCcccE
Q 010816          339 FTMFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPDGQ-WVASAS-FDKSIKLWNGTT-------GKFVAVFRGHVGPV  405 (500)
Q Consensus       339 ~~v~~wd~~~~~~~~~~~~----~h~~~v~~l~~sp~g~-~lasgs-~Dg~i~lwd~~~-------~~~~~~~~~h~~~v  405 (500)
                      +.|.++|....+.......    .|...-..+ ++|++. ..+++. .++.|.++|..+       .+.+.++++....-
T Consensus       364 n~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~  442 (567)
T 1qks_A          364 NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGS  442 (567)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC
T ss_pred             CeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCC
Confidence            8999999875432211112    243222122 688754 445553 468999999987       44555554331110


Q ss_pred             EEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-------CCcEEEEECCCc-----ccc-ccc-----
Q 010816          406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-------DSTLKVWDIRTQ-----KLK-QDL-----  467 (500)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-------d~~v~iwd~~~~-----~~~-~~~-----  467 (500)
                                                 .-+..+|++++|.+...       .++|.++|+.+.     ... +.+     
T Consensus       443 ---------------------------~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~  495 (567)
T 1qks_A          443 ---------------------------LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW  495 (567)
T ss_dssp             ---------------------------CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH
T ss_pred             ---------------------------EEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccc
Confidence                                       00135899999988763       358999998876     211 222     


Q ss_pred             ---cCcccCEEEEEEcCCCCEEEEEe-----CCCcEEEec
Q 010816          468 ---PGHADEVFAVDWSPDGEKVASGG-----KDRVLKLWM  499 (500)
Q Consensus       468 ---~~h~~~V~~l~~s~dg~~l~s~~-----~D~~v~iW~  499 (500)
                         ..-..++..+.|+|+|+++..+.     .++.|.+.+
T Consensus       496 ~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          496 AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             cccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence               11235789999999999886653     267787765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=9.9e-13  Score=121.23  Aligned_cols=229  Identities=12%  Similarity=0.080  Sum_probs=154.3

Q ss_pred             cccceEEEEeeeeecCCCCc-eEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC-CCeEEEEeCC
Q 010816          192 HKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ-DCTIKVWETT  269 (500)
Q Consensus       192 ~~~~v~~~~~~~~~~~~~~~-~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~-dg~i~lwd~~  269 (500)
                      +.....++.|.|.     ++ .++++..++.|..||...+  ...+..+...+.++++++++.++.+.. ++.|.+||..
T Consensus        26 ~~~~~eg~~~d~~-----g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           26 GFTWTEGPVYVPA-----RSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             CCSSEEEEEEEGG-----GTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             CCccccCCeEeCC-----CCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            3445677888763     33 6788888999999999887  555666777789999999987766664 5899999998


Q ss_pred             CCeeEEEeecCC----ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE----ee-----
Q 010816          270 QGKLIRELKGHG----HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS----GS-----  336 (500)
Q Consensus       270 ~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~s-----  336 (500)
                      +++.........    ..+..++++++.                                    ..+++    |+     
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G------------------------------------~l~vtd~~~g~~~~~~  142 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDG------------------------------------SLWFSDPTYGIDKPEE  142 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTS------------------------------------CEEEEECSHHHHCGGG
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCC------------------------------------CEEEECCccccccccc
Confidence            877543322111    122334444432                                    23333    22     


Q ss_pred             --------CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-CCce---EEEEeCCccc
Q 010816          337 --------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKF---VAVFRGHVGP  404 (500)
Q Consensus       337 --------~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~-~~~~---~~~~~~h~~~  404 (500)
                              ..+.|..++..   .....+..+....+.++|+|+|+.|++.+.++.|++|++. +|++   ...+..+.+ 
T Consensus       143 ~~~~~~~~~~~~l~~~~~~---g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-  218 (296)
T 3e5z_A          143 GYGGEMELPGRWVFRLAPD---GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG-  218 (296)
T ss_dssp             SSCCCCCSSSCEEEEECTT---SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS-
T ss_pred             cccccccCCCcEEEEECCC---CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC-
Confidence                    13456666643   2233445566678999999999988777888999999986 4543   122211111 


Q ss_pred             EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEE-cCCC
Q 010816          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW-SPDG  483 (500)
Q Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~-s~dg  483 (500)
                                                ....++++++|++.++.  ++.|.+||.. ++.+..+..+.. +.+++| +|++
T Consensus       219 --------------------------~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~  268 (296)
T 3e5z_A          219 --------------------------KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEG  268 (296)
T ss_dssp             --------------------------CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTS
T ss_pred             --------------------------CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCC
Confidence                                      11223678999877766  8899999986 666666666666 899999 6899


Q ss_pred             CEEEEEeCCCcEEE
Q 010816          484 EKVASGGKDRVLKL  497 (500)
Q Consensus       484 ~~l~s~~~D~~v~i  497 (500)
                      +.|+.++.++..++
T Consensus       269 ~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          269 RTLYMTVSTEFWSI  282 (296)
T ss_dssp             CEEEEEETTEEEEE
T ss_pred             CEEEEEcCCeEEEE
Confidence            99999998876654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=4.9e-14  Score=146.05  Aligned_cols=244  Identities=11%  Similarity=-0.011  Sum_probs=157.7

Q ss_pred             cCCcccEEEEEEcCCCCeEE-----EEeCCCcEEEEeCCCCceeEEecCCCCCE--EEEEEcCCCCEEEEEeCCCe----
Q 010816          105 AGHTEAVLSVAFSPDGRQLA-----SGSGDTTVRLWDLNTQTPMFKCTGHKNWV--LCIAWSADGKHLVSGSKAGE----  173 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~la-----t~~~d~~i~iwd~~~~~~~~~~~~h~~~v--~~v~~s~~~~~l~s~~~d~~----  173 (500)
                      .+|...+.+++|||||++||     .|+.+.+|++||+.+++.+.  ..+-..+  ..++|+|||+.|+.++.|..    
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence            46777899999999999999     34445789999999987641  1122222  67999999999999988776    


Q ss_pred             ---------EEEEeCCCCCcccc---cccCcccceEEEEeeeeecCCCCceEEEEeCCC----cEEEEECCCCeEEEEec
Q 010816          174 ---------LQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDG----DARIWDVSLRKCVICLS  237 (500)
Q Consensus       174 ---------i~~wd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg----~v~iwd~~~~~~~~~~~  237 (500)
                               |++|++.++.....   ....+...+.++.|+|     +++.++.++.++    .|++||...+... .+.
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-----DG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~  268 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-----DGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV  268 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-----TSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-----CCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee
Confidence                     99999988753211   1223445677788776     556777666555    6777776554433 233


Q ss_pred             CccccEEEEEeCCCCeEEEEeC----CCeEEEEeCCCCee---EEEeecC-CceEEEEEecCcceeeeccccCCCCCCCC
Q 010816          238 GHTLAVTCVKWGGDGVIYTGSQ----DCTIKVWETTQGKL---IRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSS  309 (500)
Q Consensus       238 ~h~~~v~~~~~~~~~~l~t~~~----dg~i~lwd~~~~~~---~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  309 (500)
                      .+...+....+..++ ++..+.    ++.|.+||+.++..   ...+..+ ...+..+++..                  
T Consensus       269 ~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~------------------  329 (695)
T 2bkl_A          269 KGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVG------------------  329 (695)
T ss_dssp             ECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEET------------------
T ss_pred             cCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEEC------------------
Confidence            343344444454444 544443    57899999877652   2223222 33455554431                  


Q ss_pred             HHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc-cCcEEEEEECCCCCEEEEE----eCCCcE
Q 010816          310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASA----SFDKSI  384 (500)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~lasg----s~Dg~i  384 (500)
                                         ...+++...|+..++|...........+..+ ...+..++++|+++.++..    ...++|
T Consensus       330 -------------------~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v  390 (695)
T 2bkl_A          330 -------------------GHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQI  390 (695)
T ss_dssp             -------------------TEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEE
T ss_pred             -------------------CEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence                               2357788889988888654222222333333 5667888999999777633    234789


Q ss_pred             EEEeCCCCce
Q 010816          385 KLWNGTTGKF  394 (500)
Q Consensus       385 ~lwd~~~~~~  394 (500)
                      ++||+.+++.
T Consensus       391 ~~~d~~~g~~  400 (695)
T 2bkl_A          391 YKTSVSTGKS  400 (695)
T ss_dssp             EEEETTTCCE
T ss_pred             EEEECCCCcE
Confidence            9999998874

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.58  E-value=3.4e-13  Score=140.16  Aligned_cols=245  Identities=14%  Similarity=0.078  Sum_probs=160.0

Q ss_pred             cCCcccEEEEEEcCCCCeEEEEeCCC-----cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe------
Q 010816          105 AGHTEAVLSVAFSPDGRQLASGSGDT-----TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE------  173 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~~~d~-----~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~------  173 (500)
                      .+|...+..++|||||++||.++.++     .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.      
T Consensus       121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccc
Confidence            35666789999999999999775433     8999999998765432222 22667999999999999888766      


Q ss_pred             ----------EEEEeCCCCCccccc---ccCcccceEEEEeeeeecCCCCceEEEEeC-----CCcEEEEECCC------
Q 010816          174 ----------LQCWDPQTGKPSGNP---LSGHKKWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVSL------  229 (500)
Q Consensus       174 ----------i~~wd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~-----dg~v~iwd~~~------  229 (500)
                                |.+|++.++......   ...|...+.++.|+|     +++.++..+.     +..|++||+.+      
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  274 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-----DGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-----TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-----CCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence                      999999877532111   122445567777766     5566666554     57899999976      


Q ss_pred             Ce-EEEEecCccccEEEEEeCCCC-eEEEEeC----CCeEEEEeCCCCe--eEEEeecCCc--eEEEEEecCcceeeecc
Q 010816          230 RK-CVICLSGHTLAVTCVKWGGDG-VIYTGSQ----DCTIKVWETTQGK--LIRELKGHGH--WVNSLALSTEYALRTGA  299 (500)
Q Consensus       230 ~~-~~~~~~~h~~~v~~~~~~~~~-~l~t~~~----dg~i~lwd~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~~~~~  299 (500)
                      +. ....+..+...+... |++++ .|+..+.    .+.|.+||+.++.  ..+.+..+..  .+..+.+.+.       
T Consensus       275 ~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------  346 (710)
T 2xdw_A          275 GILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS-------  346 (710)
T ss_dssp             SSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT-------
T ss_pred             CccceEEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC-------
Confidence            42 344455555544443 55544 4544443    2369999998764  2344433332  4555555422       


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe--EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEE
Q 010816          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS  377 (500)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~--v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~las  377 (500)
                                                   ...+++...|+.  |.+|++.... ....+..+...+..++++|++..++.
T Consensus       347 -----------------------------~~lv~~~~~~g~~~l~~~~~~~g~-~~~~l~~~~~~v~~~~~s~d~~~l~~  396 (710)
T 2xdw_A          347 -----------------------------NFLVLCYLHDVKNTLQLHDLATGA-LLKIFPLEVGSVVGYSGQKKDTEIFY  396 (710)
T ss_dssp             -----------------------------TEEEEEEEETTEEEEEEEETTTCC-EEEEECCCSSEEEEEECCTTCSEEEE
T ss_pred             -----------------------------CEEEEEEEECCEEEEEEEECCCCC-EEEecCCCCceEEEEecCCCCCEEEE
Confidence                                         235677777875  4556653322 23445566777899999999876653


Q ss_pred             E-e---CCCcEEEEeCCCCc
Q 010816          378 A-S---FDKSIKLWNGTTGK  393 (500)
Q Consensus       378 g-s---~Dg~i~lwd~~~~~  393 (500)
                      . +   ..+.|++||+.+++
T Consensus       397 ~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          397 QFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEECSSCCCEEEEEETTSSS
T ss_pred             EEeCCCCCCEEEEEECCCCc
Confidence            3 2   24789999998887

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=2.4e-12  Score=120.40  Aligned_cols=255  Identities=9%  Similarity=0.026  Sum_probs=168.0

Q ss_pred             CCCeEEEEeCCCCCcccccccC-----cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEE
Q 010816          170 KAGELQCWDPQTGKPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT  244 (500)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~  244 (500)
                      .++.|.++|.++++........     ......++.+.      ....+++...++.|.+||..+++.+..+.. .....
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~------~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~   87 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR------DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPR   87 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE------TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE------CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCc
Confidence            4889999999988754322111     11223444432      234667777789999999999998877753 34567


Q ss_pred             EEEeCCCCeEEEEe-CCCeEEEEeCCCCeeEEEeecCCc-----eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816          245 CVKWGGDGVIYTGS-QDCTIKVWETTQGKLIRELKGHGH-----WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (500)
Q Consensus       245 ~~~~~~~~~l~t~~-~dg~i~lwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (500)
                      .+++++++.++.+. .++.|.+||..+++....+.....     ....+++.                            
T Consensus        88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~----------------------------  139 (328)
T 3dsm_A           88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY----------------------------  139 (328)
T ss_dssp             EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE----------------------------
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE----------------------------
Confidence            88887778877776 899999999999887766543220     11122221                            


Q ss_pred             HhhhhhcCCCCcEEEEee-CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC----------CcEEEE
Q 010816          319 ERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD----------KSIKLW  387 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D----------g~i~lw  387 (500)
                               ....+++.. .++.|.++|+...... ..+.. ......++++|+|++++++..+          +.|.++
T Consensus       140 ---------~~~lyv~~~~~~~~v~viD~~t~~~~-~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i  208 (328)
T 3dsm_A          140 ---------GKYVYVNCWSYQNRILKIDTETDKVV-DELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI  208 (328)
T ss_dssp             ---------TTEEEEEECTTCCEEEEEETTTTEEE-EEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred             ---------CCEEEEEcCCCCCEEEEEECCCCeEE-EEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence                     112334433 4889999997654322 22221 2235678999999987777655          789999


Q ss_pred             eCCCCceEEEEeCCcc-cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc-
Q 010816          388 NGTTGKFVAVFRGHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ-  465 (500)
Q Consensus       388 d~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~-  465 (500)
                      |..+++....+....+ ...                           .++++|+++.|+.+..  .|.+||..+++... 
T Consensus       209 d~~t~~v~~~~~~~~g~~p~---------------------------~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~  259 (328)
T 3dsm_A          209 DAETFTVEKQFKFKLGDWPS---------------------------EVQLNGTRDTLYWINN--DIWRMPVEADRVPVR  259 (328)
T ss_dssp             ETTTTEEEEEEECCTTCCCE---------------------------EEEECTTSCEEEEESS--SEEEEETTCSSCCSS
T ss_pred             ECCCCeEEEEEecCCCCCce---------------------------eEEEecCCCEEEEEcc--EEEEEECCCCceeee
Confidence            9999887765542211 112                           2367999998888765  89999998877642 


Q ss_pred             -cccCcccCEEEEEEcCC-CCEEEEE----eCCCcEEEec
Q 010816          466 -DLPGHADEVFAVDWSPD-GEKVASG----GKDRVLKLWM  499 (500)
Q Consensus       466 -~~~~h~~~V~~l~~s~d-g~~l~s~----~~D~~v~iW~  499 (500)
                       .+..+......++++|+ ++..++.    ..+++|.+|+
T Consensus       260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence             12222456889999995 5555555    5688999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.57  E-value=7.4e-12  Score=117.41  Aligned_cols=160  Identities=9%  Similarity=0.046  Sum_probs=108.8

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEeC
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDP  179 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d----~~i~~wd~  179 (500)
                      +.++...+.+++|+|+|++++++..++.|.+||..+++.......+...+.+++|+++|+++++...+    +.|.+||.
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence            34566677899999999988888889999999998876544333566789999999999988877766    68999999


Q ss_pred             CCCCcccccc-cCcccceEEEEeeeeecCCCCceEEEEeC------CCcEEEEECCCCeEEEEecCccccEEEEEeCCCC
Q 010816          180 QTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG  252 (500)
Q Consensus       180 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~s~s~------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  252 (500)
                      .++....... ..+...+.++.+.|     ++..+++...      .+.|..+|...++... +..+......++|++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~i~~d~-----~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          120 NGDNLQDIIEDLSTAYCIDDMVFDS-----KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDE  193 (333)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECT-----TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTS
T ss_pred             CCCEEEEEEccCccCCcccceEECC-----CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCC
Confidence            8775431111 12334567777665     3345554443      2455666655444332 22233346788999987


Q ss_pred             e-EEE-EeCCCeEEEEeCC
Q 010816          253 V-IYT-GSQDCTIKVWETT  269 (500)
Q Consensus       253 ~-l~t-~~~dg~i~lwd~~  269 (500)
                      . ++. .+.++.|.+||..
T Consensus       194 ~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEEC
T ss_pred             CEEEEEeCCCCeEEEEEec
Confidence            3 544 4567899999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.57  E-value=2.3e-12  Score=118.79  Aligned_cols=242  Identities=12%  Similarity=0.052  Sum_probs=155.7

Q ss_pred             CCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816          106 GHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~  184 (500)
                      .+.....+++|+|+++ +++++..++.|..||..++  ...+..+...+.+++++++|+++++...++.|.+||..+++.
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW  102 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence            3455677899999998 7788888999999999887  455566778899999999999888877788999999877653


Q ss_pred             ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEE-----e-
Q 010816          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG-----S-  258 (500)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~-----~-  258 (500)
                      ... ......                                           .....+..++++++|.++.+     + 
T Consensus       103 ~~~-~~~~~~-------------------------------------------~~~~~~~~i~~d~~G~l~vtd~~~g~~  138 (296)
T 3e5z_A          103 ESI-ADSFEG-------------------------------------------KKLNSPNDVCLAPDGSLWFSDPTYGID  138 (296)
T ss_dssp             EEE-ECEETT-------------------------------------------EECCCCCCEEECTTSCEEEEECSHHHH
T ss_pred             EEE-eeccCC-------------------------------------------CCCCCCCCEEECCCCCEEEECCccccc
Confidence            210 000000                                           00011233455666654442     1 


Q ss_pred             ------------CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816          259 ------------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (500)
Q Consensus       259 ------------~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (500)
                                  ..+.|..++.. ++. ..+..+......++++++                                  
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~d----------------------------------  182 (296)
T 3e5z_A          139 KPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPS----------------------------------  182 (296)
T ss_dssp             CGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTT----------------------------------
T ss_pred             cccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCC----------------------------------
Confidence                        12355555544 333 333334444566666654                                  


Q ss_pred             CCCcEEEEeeCCCeEEEEcCCCCCCC---ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc
Q 010816          327 NAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG  403 (500)
Q Consensus       327 ~~~~~~~s~s~d~~v~~wd~~~~~~~---~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~  403 (500)
                        +..+++.+.++.|++|++......   ...+..+...+..++++++|++.++.  ++.|.+||.. ++.+..+..+..
T Consensus       183 --g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~  257 (296)
T 3e5z_A          183 --GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT  257 (296)
T ss_dssp             --SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC
T ss_pred             --CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC
Confidence              234567777889999997522221   11122234456789999999977766  8899999986 777777766554


Q ss_pred             cEEEEEeeeeeeecCCCCceeeeeccccceeeEE-cCCCCEEEEEECCCcEEEEECCCccc
Q 010816          404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW-SADSRLLLSGSKDSTLKVWDIRTQKL  463 (500)
Q Consensus       404 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~s~s~d~~v~iwd~~~~~~  463 (500)
                       +.++                           +| +|+++.|++++.++ +..++.++.++
T Consensus       258 -~~~~---------------------------~f~~~d~~~L~v~t~~~-l~~~~~~~~~~  289 (296)
T 3e5z_A          258 -TSNL---------------------------CFGGPEGRTLYMTVSTE-FWSIETNVRGL  289 (296)
T ss_dssp             -CCEE---------------------------EEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred             -ceeE---------------------------EEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence             4444                           45 58999999888774 44455555444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.56  E-value=1.4e-12  Score=118.44  Aligned_cols=213  Identities=9%  Similarity=0.077  Sum_probs=154.5

Q ss_pred             CCceEEEEeCCCcEEEEECCCCeEEEEecCcc-ccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCC-ceEEE
Q 010816          209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHT-LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG-HWVNS  286 (500)
Q Consensus       209 ~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~-~~v~~  286 (500)
                      +.+.+++++.|+.|++||..+++.+..+..+. ..+.++.+.++|.++. +.++.|..||. +|+.+..+..+. ..+.+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            34678999999999999999999999888765 4678888999987666 56888999998 899988887642 34555


Q ss_pred             EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC-CCeEEEEcCCCCCCCce-ee----eccc
Q 010816          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKT-RM----TGHQ  360 (500)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~-d~~v~~wd~~~~~~~~~-~~----~~h~  360 (500)
                      +.+.++                                    +..+++.+. ++.+..+|.. .+.... .+    .++.
T Consensus        82 ~~~~~d------------------------------------G~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~  124 (276)
T 3no2_A           82 ARILPD------------------------------------GNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH  124 (276)
T ss_dssp             EEECTT------------------------------------SCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG
T ss_pred             cEECCC------------------------------------CCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc
Confidence            554443                                    345666665 6677777642 221111 11    1222


Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (500)
Q Consensus       361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  440 (500)
                      .....+++.++|+++++...++.|..||.. |+.+..+.....+ +.+                           ...++
T Consensus       125 ~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~-~~~---------------------------~~~~~  175 (276)
T 3no2_A          125 AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTP-FSS---------------------------AFLDN  175 (276)
T ss_dssp             GSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCC-CEE---------------------------EECTT
T ss_pred             ccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCc-cce---------------------------eEcCC
Confidence            234556789999999999999999999998 9988777654222 111                           34689


Q ss_pred             CCEEEEEECCCcEEEEECCCccccccccCcc------cCEEEEEEcCCCCEEEEE
Q 010816          441 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA------DEVFAVDWSPDGEKVASG  489 (500)
Q Consensus       441 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~------~~V~~l~~s~dg~~l~s~  489 (500)
                      |.++++++.++.|..+|..+++.+.++..+.      ..+..+...++|..+++.
T Consensus       176 g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          176 GDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            9999999988899999999888876654321      236788888999888877

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.53  E-value=1.4e-10  Score=106.79  Aligned_cols=241  Identities=10%  Similarity=0.029  Sum_probs=158.2

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~  185 (500)
                      ....+.+++++++|++.++...++.|.+||.. ++.. ..+..+...+.++++.++|.+.++...++.|..||.. ++..
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~   95 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT   95 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence            34578899999999988887788999999987 4332 2233344678999999999888877778899999987 5543


Q ss_pred             cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE-EecCccccEEEEEeCCCCeEEEEeC-CCeE
Q 010816          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGSQ-DCTI  263 (500)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~l~t~~~-dg~i  263 (500)
                      ..........+.++.+.+     ++..+++...++.|..+|.. ++... .+......+.++.+.+++.++.+.. ++.|
T Consensus        96 ~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i  169 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGL-----NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI  169 (300)
T ss_dssp             EEECSSTTCCEEEEEECS-----TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             EecCCCCCCCCccceECC-----CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence            222222234456666543     34566666667889999987 54432 2333445678899988887766654 6789


Q ss_pred             EEEeCCCCeeEEEe-ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEE
Q 010816          264 KVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (500)
Q Consensus       264 ~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~  342 (500)
                      ..||. +++..... .........+++.++                                    +...++....+.|.
T Consensus       170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~------------------------------------g~l~v~~~~~~~i~  212 (300)
T 2qc5_A          170 GRITN-TGKLEEYPLPTNAAAPVGITSGND------------------------------------GALWFVEIMGNKIG  212 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTT------------------------------------SSEEEEETTTTEEE
T ss_pred             EEECC-CCcEEEeeCCCCCCCcceEEECCC------------------------------------CCEEEEccCCCEEE
Confidence            99998 55544321 122233445544432                                    23445555567788


Q ss_pred             EEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 010816          343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF  394 (500)
Q Consensus       343 ~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~  394 (500)
                      .++.. ..........+...+.+++++++|++.++...++.|..||. +++.
T Consensus       213 ~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~  262 (300)
T 2qc5_A          213 RITTT-GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTI  262 (300)
T ss_dssp             EECTT-CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCE
T ss_pred             EEcCC-CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcE
Confidence            88862 22111112234566899999999997777767789999998 4543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.52  E-value=6.5e-12  Score=113.92  Aligned_cols=226  Identities=8%  Similarity=0.004  Sum_probs=145.2

Q ss_pred             CCceEE-EEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEee-cCCceEEE
Q 010816          209 PCRRFV-SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNS  286 (500)
Q Consensus       209 ~~~~~~-s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~-~~~~~v~~  286 (500)
                      ++..++ +.+.++.|.+||............+...+.++++++++.++.+..++.|.+||...+.. ..+. ........
T Consensus        34 ~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~~  112 (270)
T 1rwi_B           34 AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-TVLPFDGLNYPEG  112 (270)
T ss_dssp             TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC-EECCCCSCSSEEE
T ss_pred             CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE-eeeecCCcCCCcc
Confidence            344566 44678899999876554332222333456788899888777776688999999765443 2222 12233455


Q ss_pred             EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEE
Q 010816          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV  366 (500)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l  366 (500)
                      +++.++                                    +..+++...++.|..|+...... ..........+.++
T Consensus       113 i~~~~~------------------------------------g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i  155 (270)
T 1rwi_B          113 LAVDTQ------------------------------------GAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGV  155 (270)
T ss_dssp             EEECTT------------------------------------CCEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCE
T ss_pred             eEECCC------------------------------------CCEEEEECCCCEEEEEECCCcee-EeeccccCCCceeE
Confidence            555442                                    23456666678899997543221 11112223457789


Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816          367 YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS  446 (500)
Q Consensus       367 ~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  446 (500)
                      +++|+|+++++...++.|.+||...+........+......                           ++++++|.++++
T Consensus       156 ~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~---------------------------i~~d~~g~l~v~  208 (270)
T 1rwi_B          156 AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWG---------------------------IAVDEAGTVYVT  208 (270)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEE---------------------------EEECTTCCEEEE
T ss_pred             EEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceE---------------------------EEECCCCCEEEE
Confidence            99999998888777889999998776543221111122222                           356889988887


Q ss_pred             EECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       447 ~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ...++.|.+||............+...+.+++++++|+.+++...+++|++++
T Consensus       209 ~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          209 EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             ETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence            77889999999876554333223445789999999999888889999999986

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.51  E-value=6.7e-12  Score=113.94  Aligned_cols=192  Identities=11%  Similarity=0.034  Sum_probs=128.9

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCceeEEecCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceE
Q 010816          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT  197 (500)
Q Consensus       119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~  197 (500)
                      .++.|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|++|+  +.++.|..||. +|+.+.....+....+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            45789999999999999999999998887765 4788999999999888  45788999999 77754432222223444


Q ss_pred             EEEeeeeecCCCCceEEEEeC-CCcEEEEECCCCeEEEEec------CccccEEEEEeCCCC-eEEEEeCCCeEEEEeCC
Q 010816          198 GISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLS------GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT  269 (500)
Q Consensus       198 ~~~~~~~~~~~~~~~~~s~s~-dg~v~iwd~~~~~~~~~~~------~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~  269 (500)
                      ++.+.     .+++.+++.+. ++.+..+|. .++.+..+.      ++......+...+++ ++++...++.|..||..
T Consensus        81 ~~~~~-----~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A           81 TARIL-----PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             EEEEC-----TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred             ccEEC-----CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence            54443     35567777666 666666664 555544432      111222233344444 45555566777777765


Q ss_pred             CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC
Q 010816          270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (500)
Q Consensus       270 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~  349 (500)
                       |+.+..+...                                                                     
T Consensus       155 -G~~~w~~~~~---------------------------------------------------------------------  164 (276)
T 3no2_A          155 -GQLLNSVKLS---------------------------------------------------------------------  164 (276)
T ss_dssp             -SCEEEEEECS---------------------------------------------------------------------
T ss_pred             -CCEEEEEECC---------------------------------------------------------------------
Confidence             5554433210                                                                     


Q ss_pred             CCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816          350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (500)
Q Consensus       350 ~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~  400 (500)
                                 ..+.++.+.++|+++++++.++.|..+|..+|+.+..+..
T Consensus       165 -----------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~  204 (276)
T 3no2_A          165 -----------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA  204 (276)
T ss_dssp             -----------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred             -----------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence                       1223456778999999998888999999999999877764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.51  E-value=7.7e-12  Score=113.41  Aligned_cols=240  Identities=8%  Similarity=-0.052  Sum_probs=155.8

Q ss_pred             cEEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          110 AVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       110 ~V~~~~~sp~~~~la-t~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      ...+++++++|++.+ +...++.|.+||..+.........+...+.+++++++|+++++.. ++.|.+||...+..... 
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~-  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL-  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC-
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee-
Confidence            567899999999777 446788999999766543222123335678899999998666665 88999999876543211 


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEe-CCCeEEEEe
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS-QDCTIKVWE  267 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~-~dg~i~lwd  267 (500)
                      .........++.+.+     ++..+++...++.|.+|+..+...............++++++++.++.+. .++.|.+||
T Consensus       103 ~~~~~~~p~~i~~~~-----~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~  177 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDT-----QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE  177 (270)
T ss_dssp             CCCSCSSEEEEEECT-----TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ecCCcCCCcceEECC-----CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence            112224456676654     34566776778899999876554433222333356778888887666554 568999999


Q ss_pred             CCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816          268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (500)
Q Consensus       268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~  347 (500)
                      ...+...............++++++                                    +..+++...++.|..|+..
T Consensus       178 ~~~~~~~~~~~~~~~~p~~i~~d~~------------------------------------g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          178 AESNNQVVLPFTDITAPWGIAVDEA------------------------------------GTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             TTTCCEEECCCSSCCSEEEEEECTT------------------------------------CCEEEEETTTSCEEEECTT
T ss_pred             cCCCceEeecccCCCCceEEEECCC------------------------------------CCEEEEECCCCcEEEEcCC
Confidence            8765543322222234455555443                                    2345666678899999975


Q ss_pred             CCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (500)
Q Consensus       348 ~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~  393 (500)
                      .... ......+...+.+++++|+|+++++...++.|++++....+
T Consensus       222 ~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          222 STTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CSCC-EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCcc-eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            4322 11122333568999999999988998999999999986543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.51  E-value=2.6e-10  Score=104.91  Aligned_cols=274  Identities=11%  Similarity=0.046  Sum_probs=172.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC
Q 010816          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS  228 (500)
Q Consensus       149 h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~  228 (500)
                      ....+.++.+.++|.+.++...++.|..||.. ++.....+......+.++.+.+     ++..+++...++.|..+|..
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-----LGDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECTT
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-----CCCEEEEecCCCeEEEECCC
Confidence            44578899999999988887778999999987 5533222222334556666543     34456665667889999987


Q ss_pred             CCeEE-EEecCccccEEEEEeCCCCeEEEEeC-CCeEEEEeCCCCeeEEE-eecCCceEEEEEecCcceeeeccccCCCC
Q 010816          229 LRKCV-ICLSGHTLAVTCVKWGGDGVIYTGSQ-DCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (500)
Q Consensus       229 ~~~~~-~~~~~h~~~v~~~~~~~~~~l~t~~~-dg~i~lwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (500)
                       ++.. ..+......+.++++.+++.++.+.. ++.|..||.. ++.... +.........+++.++             
T Consensus        92 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~-------------  156 (300)
T 2qc5_A           92 -GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD-------------  156 (300)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT-------------
T ss_pred             -CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC-------------
Confidence             5443 22333345678899988887666554 7889999986 554422 2222334455554432             


Q ss_pred             CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEE
Q 010816          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK  385 (500)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~  385 (500)
                                             +...++...++.|..+|. ...........+...+..++++++|.+.++....+.|.
T Consensus       157 -----------------------g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  212 (300)
T 2qc5_A          157 -----------------------NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIG  212 (300)
T ss_dssp             -----------------------SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             -----------------------CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence                                   234455555778888886 22211111223345688999999998887777778899


Q ss_pred             EEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccc
Q 010816          386 LWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK  464 (500)
Q Consensus       386 lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~  464 (500)
                      +||. +++.... +..+......                           +++.++|++.++...++.|..||.. ++..
T Consensus       213 ~~~~-~g~~~~~~~~~~~~~~~~---------------------------i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~  263 (300)
T 2qc5_A          213 RITT-TGEISEYDIPTPNARPHA---------------------------ITAGKNSEIWFTEWGANQIGRITND-NTIQ  263 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEE---------------------------EEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             EEcC-CCcEEEEECCCCCCCceE---------------------------EEECCCCCEEEeccCCCeEEEECCC-CcEE
Confidence            9998 5554322 1112222222                           3567889877776677899999984 4332


Q ss_pred             -ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          465 -QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       465 -~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                       ..+......+.++.++++|+..++.. . .|..+
T Consensus       264 ~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~  296 (300)
T 2qc5_A          264 EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL  296 (300)
T ss_dssp             EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred             EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence             22333445678899999998666554 4 44443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=2.5e-12  Score=134.16  Aligned_cols=272  Identities=14%  Similarity=0.049  Sum_probs=161.3

Q ss_pred             CCCCeEEEEeCCCc---EEEEeC--C---CCceeEE------ecCCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEe
Q 010816          118 PDGRQLASGSGDTT---VRLWDL--N---TQTPMFK------CTGHKNWVLCIAWSADGKHLVSGSKA-----GELQCWD  178 (500)
Q Consensus       118 p~~~~lat~~~d~~---i~iwd~--~---~~~~~~~------~~~h~~~v~~v~~s~~~~~l~s~~~d-----~~i~~wd  178 (500)
                      |+|++++....++.   -.||..  .   ++.....      ..+|...+..++|||||++||.++.+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            89998887654432   556654  3   3332221      12344468899999999999876654     4699999


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc--------------EEEEECCCCe----EEEEecCcc
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD--------------ARIWDVSLRK----CVICLSGHT  240 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~--------------v~iwd~~~~~----~~~~~~~h~  240 (500)
                      +.+|+.....  .+...+.++.|+|     + +.|+.++.++.              |++|++.++.    .+.....+.
T Consensus       196 l~tg~~~~~~--~~~~~~~~~~wsp-----D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~  267 (741)
T 1yr2_A          196 VADGKPLADE--LKWVKFSGLAWLG-----N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP  267 (741)
T ss_dssp             TTTCCEEEEE--EEEEESCCCEEST-----T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred             CCCCCCCCcc--CCCceeccEEEEC-----C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC
Confidence            9998754321  1112224667765     4 56777766554              8999997764    333333444


Q ss_pred             ccEEEEEeCCCC-eEEEEeCC-----CeEEEEeCCCC--eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816          241 LAVTCVKWGGDG-VIYTGSQD-----CTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (500)
Q Consensus       241 ~~v~~~~~~~~~-~l~t~~~d-----g~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (500)
                      ..+..+.|++|| .|+..+.+     ..|.+||+.++  +....+..+...+.... .++                    
T Consensus       268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~d--------------------  326 (741)
T 1yr2_A          268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGV--------------------  326 (741)
T ss_dssp             TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEE--------------------
T ss_pred             eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ecc--------------------
Confidence            458889999998 45555433     48999998776  31334433332222221 111                    


Q ss_pred             HHHHHHHhhhhhcCCCCcEEEEeeC----CCeEEEEcCCCCC-CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEE
Q 010816          313 MKKAALERYNKIKGNAPERLVSGSD----DFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (500)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~s~s~----d~~v~~wd~~~~~-~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lw  387 (500)
                                      +..++..+.    ++.|.+||+.... .....+..+...+..++++ ++.++++...|+..+||
T Consensus       327 ----------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  389 (741)
T 1yr2_A          327 ----------------GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVL  389 (741)
T ss_dssp             ----------------TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred             ----------------CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence                            234444443    4568899875431 2233344455567778887 66788888999987777


Q ss_pred             eCC-CCceEEEEeCC-cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE-EE---CCCcEEEEECCCc
Q 010816          388 NGT-TGKFVAVFRGH-VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS-GS---KDSTLKVWDIRTQ  461 (500)
Q Consensus       388 d~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~s---~d~~v~iwd~~~~  461 (500)
                      ... +++....+..+ .+.+..                           ++++|+++.|+. .+   ..++|++||+.++
T Consensus       390 ~~~~~g~~~~~l~~~~~~~v~~---------------------------~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          390 AFDLDGKPAGAVSLPGIGSASG---------------------------LSGRPGDRHAYLSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             EEETTSCEEEECBCSSSCEEEE---------------------------EECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEeCCCCceeeccCCCCeEEEE---------------------------eecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            543 35444444332 233322                           256788875553 22   3478999999876


Q ss_pred             c
Q 010816          462 K  462 (500)
Q Consensus       462 ~  462 (500)
                      +
T Consensus       443 ~  443 (741)
T 1yr2_A          443 K  443 (741)
T ss_dssp             E
T ss_pred             c
Confidence            5

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.49  E-value=3.6e-11  Score=112.41  Aligned_cols=244  Identities=13%  Similarity=0.077  Sum_probs=161.7

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      .....+.+. ++++.++...++.|.+||..+++.+..+. .......++++++++..++...++.|.+||+.+++.....
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            345667773 35555666678999999999998877775 3456889999999854455448999999999987654321


Q ss_pred             ccCc----ccceEEEEeeeeecCCCCceEEEEe-CCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCC---
Q 010816          189 LSGH----KKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD---  260 (500)
Q Consensus       189 ~~~~----~~~v~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~d---  260 (500)
                      ..+.    .....++.+.      ....+++.. .++.|.++|..+++.+..+.... ....+.+++++.++.++..   
T Consensus       122 ~~g~~~~~~~~p~~i~~~------~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~  194 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQY------GKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYE  194 (328)
T ss_dssp             ECTTCCTTTCBCCCEEEE------TTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCT
T ss_pred             EcCCccccCCCcceEEEE------CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCcc
Confidence            1111    0123344431      223444443 48899999999998777665332 2346778888877666543   


Q ss_pred             --------CeEEEEeCCCCeeEEEeecC-CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816          261 --------CTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER  331 (500)
Q Consensus       261 --------g~i~lwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (500)
                              +.|.++|..+++....+... ......++++++                                    ...
T Consensus       195 ~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d------------------------------------~~~  238 (328)
T 3dsm_A          195 GSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT------------------------------------RDT  238 (328)
T ss_dssp             TCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT------------------------------------SCE
T ss_pred             CCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC------------------------------------CCE
Confidence                    68999999998877666432 234566777654                                    234


Q ss_pred             EEEeeCCCeEEEEcCCCCCCCcee-eecccCcEEEEEECC-CCCEEEEE----eCCCcEEEEeCCCCceEEEEeC
Q 010816          332 LVSGSDDFTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSP-DGQWVASA----SFDKSIKLWNGTTGKFVAVFRG  400 (500)
Q Consensus       332 ~~s~s~d~~v~~wd~~~~~~~~~~-~~~h~~~v~~l~~sp-~g~~lasg----s~Dg~i~lwd~~~~~~~~~~~~  400 (500)
                      +..+..  .|.+||.......... ...+......++++| ++.+.++.    ..++.|.+||.. |+.+..++.
T Consensus       239 lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          239 LYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             EEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred             EEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence            444433  8889997654432111 222245688999999 56666666    678999999998 888877653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.48  E-value=8.6e-11  Score=117.25  Aligned_cols=273  Identities=11%  Similarity=0.074  Sum_probs=174.5

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC--CCeEEEEec
Q 010816          160 ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--LRKCVICLS  237 (500)
Q Consensus       160 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~--~~~~~~~~~  237 (500)
                      +.+.++++...++.|.++|..+++.......+  .....+.++|     +++++++++.|+.|.+||+.  +.+.+..+.
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~Sp-----DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~  237 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSA-----SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK  237 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECT-----TSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECC-----CCCEEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence            34456677888999999999998765432222  1234566554     66788888999999999995  777776665


Q ss_pred             CccccEEEEEeC----CCC-eEEE-EeCCCeEEEEeCCCCeeEEEeecCC-----------ceEEEEEecCcceeeeccc
Q 010816          238 GHTLAVTCVKWG----GDG-VIYT-GSQDCTIKVWETTQGKLIRELKGHG-----------HWVNSLALSTEYALRTGAF  300 (500)
Q Consensus       238 ~h~~~v~~~~~~----~~~-~l~t-~~~dg~i~lwd~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~  300 (500)
                      .... -..++|+    +|| ++++ ...+++|.++|..+.+.++.+....           ..+..+..+++        
T Consensus       238 ~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~--------  308 (567)
T 1qks_A          238 IGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY--------  308 (567)
T ss_dssp             CCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS--------
T ss_pred             cCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCC--------
Confidence            4333 4578898    577 4444 5567999999999988887664221           12333333321        


Q ss_pred             cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe-
Q 010816          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-  379 (500)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs-  379 (500)
                                                 .+..++.-..+|.|.++|....................+.|+|+|++|+++. 
T Consensus       309 ---------------------------~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~  361 (567)
T 1qks_A          309 ---------------------------RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN  361 (567)
T ss_dssp             ---------------------------SSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             ---------------------------CCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC
Confidence                                       1334566677889999986543222111222334567889999999887665 


Q ss_pred             CCCcEEEEeCCCCceEEEEeC-CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEE
Q 010816          380 FDKSIKLWNGTTGKFVAVFRG-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVW  456 (500)
Q Consensus       380 ~Dg~i~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iw  456 (500)
                      .++.|.++|..+++++..+.. -..+-             +          .... ..++|++. +.+++. .++.|.++
T Consensus       362 ~sn~V~ViD~~t~kl~~~i~vgg~~Ph-------------p----------g~g~-~~~~p~~g~v~~t~~~g~~~Vsvi  417 (567)
T 1qks_A          362 ARNKLVVIDTKEGKLVAIEDTGGQTPH-------------P----------GRGA-NFVHPTFGPVWATSHMGDDSVALI  417 (567)
T ss_dssp             GGTEEEEEETTTTEEEEEEECSSSSBC-------------C----------TTCE-EEEETTTEEEEEEEBSSSSEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEeccCcCCC-------------C----------ccce-eeECCCCCcEEEeCCCCCCeEEEe
Confidence            578999999999987765542 11110             0          0000 01367744 444443 46899999


Q ss_pred             ECCC-------ccccccccCcccCEEEEEEcCCCCEEEEEeC-------CCcEEEec
Q 010816          457 DIRT-------QKLKQDLPGHADEVFAVDWSPDGEKVASGGK-------DRVLKLWM  499 (500)
Q Consensus       457 d~~~-------~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~-------D~~v~iW~  499 (500)
                      |..+       .+.++.+......-..+..+|++++|.....       ...|.+++
T Consensus       418 d~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          418 GTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             cCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence            9987       4555665544333345778999999887653       34677665

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.47  E-value=1.1e-09  Score=103.89  Aligned_cols=274  Identities=12%  Similarity=-0.001  Sum_probs=168.4

Q ss_pred             EcCCCCeEEEEeC--CC---cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCC
Q 010816          116 FSPDGRQLASGSG--DT---TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQ  180 (500)
Q Consensus       116 ~sp~~~~lat~~~--d~---~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------~d~~i~~wd~~  180 (500)
                      ..|+++++.....  ..   +|.++|..+++.+..+.....+  .+.++|||++|+.+.          .++.|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            4477777776653  22   8899999998877666543344  899999999998875          36789999998


Q ss_pred             CCCcccccccC-c-----ccceEEEEeeeeecCCCCceEEEEeC--CCcEEEEECCCCeEEEE-ecCccccEEEEEeCCC
Q 010816          181 TGKPSGNPLSG-H-----KKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGD  251 (500)
Q Consensus       181 ~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~~~~~~~~s~s~--dg~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~  251 (500)
                      +.+.......+ .     ...-..+.|+|     ++++++.+..  +..|.++| .+++.+.. +.-. .   |+.+.++
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-----DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~  175 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTP-----NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPG  175 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECC-----CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeC
Confidence            76654322111 0     01122455554     5667776653  57899999 99887766 4321 1   1222222


Q ss_pred             --CeEEEEeCCCeEEEEeCCCCeeEEEeec-----CCceEE-EEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhh
Q 010816          252 --GVIYTGSQDCTIKVWETTQGKLIRELKG-----HGHWVN-SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (500)
Q Consensus       252 --~~l~t~~~dg~i~lwd~~~~~~~~~~~~-----~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (500)
                        ..+++.+.||.+.++|. +++.......     ...++. ...+.+                                
T Consensus       176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~--------------------------------  222 (373)
T 2mad_H          176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN--------------------------------  222 (373)
T ss_pred             CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe--------------------------------
Confidence              35667788999999999 8776533210     000000 000000                                


Q ss_pred             hcCCCCcEEEEeeCCCeEEEEcCCCCCCCc-eeee----------cccCcEEEEEECCCCCEEEEEeC----------CC
Q 010816          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRMT----------GHQQLVNHVYFSPDGQWVASASF----------DK  382 (500)
Q Consensus       324 ~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~-~~~~----------~h~~~v~~l~~sp~g~~lasgs~----------Dg  382 (500)
                          ....++..+..+.+.+.|........ ..+.          -.......++++|+++.+..+..          ++
T Consensus       223 ----~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          223 ----KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             ----cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence                01122223356678887764321110 0110          01122344789999887776543          35


Q ss_pred             cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEEECCC
Q 010816          383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVWDIRT  460 (500)
Q Consensus       383 ~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iwd~~~  460 (500)
                      .|.++|..+++.+..+..-.. ...                           ++|+|||+ +++++. .++.|.+||+.+
T Consensus       299 ~V~VID~~t~~vv~~i~~g~~-p~~---------------------------i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          299 EVTSVTGLVGQTSSQISLGHD-VDA---------------------------ISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             eEEEEECCCCEEEEEEECCCC-cCe---------------------------EEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            799999999998877653221 222                           26799999 788877 589999999999


Q ss_pred             cccccc
Q 010816          461 QKLKQD  466 (500)
Q Consensus       461 ~~~~~~  466 (500)
                      ++.+..
T Consensus       351 ~~vv~~  356 (373)
T 2mad_H          351 GDQDQS  356 (373)
T ss_pred             CCEEee
Confidence            988776

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.45  E-value=4.9e-12  Score=131.99  Aligned_cols=245  Identities=16%  Similarity=0.059  Sum_probs=151.5

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCC-----CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe-------
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGD-----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE-------  173 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d-----~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~-------  173 (500)
                      +|...+..++|||||++||.++.+     ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.|+.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            455578899999999999987643     4699999999876542 112222357899999 99988877654       


Q ss_pred             -------EEEEeCCCCCcccccc---cCcccceEEEEeeeeecCCCCceEEEEeCC-----CcEEEEECCCC--eEEEEe
Q 010816          174 -------LQCWDPQTGKPSGNPL---SGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLR--KCVICL  236 (500)
Q Consensus       174 -------i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-----g~v~iwd~~~~--~~~~~~  236 (500)
                             |.+|++.++......+   ..+...+.++.|+|     +++.++..+.+     ..|++||+.++  ++...+
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-----DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l  312 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-----DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL  312 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-----TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-----CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence                   8899987765321111   22333567777765     55666666544     38999999776  313444


Q ss_pred             cCccccEEEEEeCCCCeEEEEeC----CCeEEEEeCCCC--eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCH
Q 010816          237 SGHTLAVTCVKWGGDGVIYTGSQ----DCTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (500)
Q Consensus       237 ~~h~~~v~~~~~~~~~~l~t~~~----dg~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (500)
                      ..+...+....+..++.|+..+.    ++.|.+||+.++  .....+..+...+..+.+..                   
T Consensus       313 ~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~-------------------  373 (741)
T 1yr2_A          313 IPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAG-------------------  373 (741)
T ss_dssp             ECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEB-------------------
T ss_pred             cCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEEC-------------------
Confidence            44443333333333345665554    345999998774  33333333433444444331                   


Q ss_pred             HHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec-ccCcEEEEEECCCCCEEEEE----eCCCcEE
Q 010816          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASA----SFDKSIK  385 (500)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~lasg----s~Dg~i~  385 (500)
                                        ...+++...|+..++|...........+.. +...+..++++|+++.|+..    ...++|+
T Consensus       374 ------------------~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~  435 (741)
T 1yr2_A          374 ------------------NRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVL  435 (741)
T ss_dssp             ------------------TEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEE
T ss_pred             ------------------CEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence                              235677888888777754322222233332 35678899999998766522    2347899


Q ss_pred             EEeCCCCce
Q 010816          386 LWNGTTGKF  394 (500)
Q Consensus       386 lwd~~~~~~  394 (500)
                      +||+.+++.
T Consensus       436 ~~d~~tg~~  444 (741)
T 1yr2_A          436 ALDPATAKT  444 (741)
T ss_dssp             EEETTTTEE
T ss_pred             EEECCCCcE
Confidence            999988863

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.45  E-value=1.1e-10  Score=109.43  Aligned_cols=296  Identities=15%  Similarity=0.059  Sum_probs=180.2

Q ss_pred             EEcCCCCeEEEEeC-----CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeC
Q 010816          115 AFSPDGRQLASGSG-----DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDP  179 (500)
Q Consensus       115 ~~sp~~~~lat~~~-----d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------~d~~i~~wd~  179 (500)
                      ...|+++++.....     ++.|.+.|..+.+.+..+..-..+ . +.++|||++|+.+.          .++.|.+||.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            44689988888765     689999999999888777654455 4 99999999887765          3678999999


Q ss_pred             CCCCcccccccCc------ccceEEEEeeeeecCCCCceEEEEeC--CCcEEEEECCCCeEEEEecCccccEEEEEeC-C
Q 010816          180 QTGKPSGNPLSGH------KKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWG-G  250 (500)
Q Consensus       180 ~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~s~s~--dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~-~  250 (500)
                      .+++.......+.      ...-..+.++     .+++++..+..  ++.|.++|+.+++.+..+.-..  + ...+. .
T Consensus       117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~s-----pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g  188 (386)
T 3sjl_D          117 VTLLPTADIELPDAPRFLVGTYPWMTSLT-----PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTA  188 (386)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEEC-----TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEE
T ss_pred             CCCeEEEEEECCCccccccCCCCceEEEc-----CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCC
Confidence            9887544321110      0011233443     46666666653  6899999999999887764211  1 11121 1


Q ss_pred             CCeEEEEeCCCeEEEEeCCC-CeeEEEeecCCceEEEEEecCcc-ee-eeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816          251 DGVIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEY-AL-RTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (500)
Q Consensus       251 ~~~l~t~~~dg~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (500)
                      ...+++.+.||++.+.++.+ ++........        +.++. .+ ....+                        . .
T Consensus       189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~--------~~~~~~~~~~~~~~------------------------~-~  235 (386)
T 3sjl_D          189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEV--------FHPEDEFLINHPAY------------------------S-Q  235 (386)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCC--------CSCTTSCBCSCCEE------------------------E-T
T ss_pred             CceeEEECCCCCEEEEECCCCCeEEEeecce--------ecccccccccccee------------------------E-c
Confidence            23577888999999999876 5543211100        00000 00 00000                        0 0


Q ss_pred             CCcEEEEeeCCCeEEEEcCCCCCC-Cceeee---------c-ccCcEEEEEECCCCCEEEEEeC----------CCcEEE
Q 010816          328 APERLVSGSDDFTMFLWEPAVSKQ-PKTRMT---------G-HQQLVNHVYFSPDGQWVASASF----------DKSIKL  386 (500)
Q Consensus       328 ~~~~~~s~s~d~~v~~wd~~~~~~-~~~~~~---------~-h~~~v~~l~~sp~g~~lasgs~----------Dg~i~l  386 (500)
                      ...+++..+.++++++.|...... ......         + .......++++|+++.+.....          .+.|.+
T Consensus       236 ~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v  315 (386)
T 3sjl_D          236 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  315 (386)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence            122444466689999999754321 111110         0 0112224777999887776543          257999


Q ss_pred             EeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEEECCCcccc
Q 010816          387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVWDIRTQKLK  464 (500)
Q Consensus       387 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iwd~~~~~~~  464 (500)
                      .|..+++.+..+..-. ..+.+                           ++++|++ +|+++. .++.|.++|..+++.+
T Consensus       316 iD~~t~kv~~~i~vg~-~~~~l---------------------------avs~D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          316 LDAKTGERLAKFEMGH-EIDSI---------------------------NVSQDEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             EETTTCCEEEEEEEEE-EECEE---------------------------EECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EECCCCeEEEEEECCC-CcceE---------------------------EECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence            9999999887664211 22222                           6799997 676655 4899999999999988


Q ss_pred             ccccCcccCEEEEEEcCC
Q 010816          465 QDLPGHADEVFAVDWSPD  482 (500)
Q Consensus       465 ~~~~~h~~~V~~l~~s~d  482 (500)
                      ++++.-. .-..+.+++|
T Consensus       368 ~~i~~~~-~p~~l~~s~d  384 (386)
T 3sjl_D          368 RSVNQLG-HGPQVITTAD  384 (386)
T ss_dssp             EEECCCC-SSCCEEEECC
T ss_pred             EEecCCC-CCceeEECCc
Confidence            7664321 1233445554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.43  E-value=1.4e-10  Score=107.63  Aligned_cols=232  Identities=12%  Similarity=0.117  Sum_probs=148.0

Q ss_pred             eEEEEeeeeecCCCCceEEE-------EeCCCcEEEEECCCCeEEEEec----CccccEEEEEeCCC-CeEEEEeCCCeE
Q 010816          196 ITGISWEPVHLNAPCRRFVS-------ASKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGD-GVIYTGSQDCTI  263 (500)
Q Consensus       196 v~~~~~~~~~~~~~~~~~~s-------~s~dg~v~iwd~~~~~~~~~~~----~h~~~v~~~~~~~~-~~l~t~~~dg~i  263 (500)
                      ..++.|.+     ++..+++       +..++.|.+||..+++......    ++...+.++.++++ +.++.++.++.|
T Consensus        20 ~~~~~~~~-----~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l   94 (314)
T 1pjx_A           20 AEGPVFDK-----NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL   94 (314)
T ss_dssp             CEEEEECT-----TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred             ccCceECC-----CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCE
Confidence            34566643     3345566       5778899999987776543222    25566889999998 888877776789


Q ss_pred             EEEeCCCCeeEEE-eecC----CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          264 KVWETTQGKLIRE-LKGH----GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       264 ~lwd~~~~~~~~~-~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      .+||.. ++.... ....    ...+..++++++.                                    ...++...+
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g------------------------------------~l~v~~~~~  137 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG------------------------------------NLWITAPAG  137 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS------------------------------------CEEEEECBC
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC------------------------------------CEEEEecCc
Confidence            999987 665433 2111    1234455554432                                    233443333


Q ss_pred             ---------------CeEEEEcCCCCCCCceeeecccCcEEEEEEC----CCCCEEE-EEeCCCcEEEEeCC-CCceE--
Q 010816          339 ---------------FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS----PDGQWVA-SASFDKSIKLWNGT-TGKFV--  395 (500)
Q Consensus       339 ---------------~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~s----p~g~~la-sgs~Dg~i~lwd~~-~~~~~--  395 (500)
                                     +.|..++.. . . ......+......++++    |+|+.|. +...++.|++||.. +++..  
T Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~~-g-~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~  214 (314)
T 1pjx_A          138 EVAPADYTRSMQEKFGSIYCFTTD-G-Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK  214 (314)
T ss_dssp             BCTTSCCCBTTSSSCEEEEEECTT-S-C-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred             ccccccccccccCCCCeEEEECCC-C-C-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc
Confidence                           467777653 1 1 22223334457889999    9997654 44567899999976 44321  


Q ss_pred             ---EEEeCCc-ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcc
Q 010816          396 ---AVFRGHV-GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA  471 (500)
Q Consensus       396 ---~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~  471 (500)
                         ..+.++. ..                           ...++++++|+++++...++.|.+||..+++....+..+.
T Consensus       215 ~~~~~~~~~~~~~---------------------------p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~  267 (314)
T 1pjx_A          215 KVWGHIPGTHEGG---------------------------ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF  267 (314)
T ss_dssp             EEEEECCCCSSCE---------------------------EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS
T ss_pred             eEEEECCCCCCCC---------------------------CCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC
Confidence               1111111 11                           1223678999998888889999999998777766666666


Q ss_pred             cCEEEEEEcCCCCEEEE-EeCCCcEEEec
Q 010816          472 DEVFAVDWSPDGEKVAS-GGKDRVLKLWM  499 (500)
Q Consensus       472 ~~V~~l~~s~dg~~l~s-~~~D~~v~iW~  499 (500)
                      ..+.+++|+|+|++|.. ...++.|..|+
T Consensus       268 ~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          268 EKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            78999999999996654 45567777765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.41  E-value=3.5e-10  Score=104.89  Aligned_cols=242  Identities=10%  Similarity=0.140  Sum_probs=151.7

Q ss_pred             ccEEEEEEcCCCCeEEE-------EeCCCcEEEEeCCCCceeEEec----CCCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 010816          109 EAVLSVAFSPDGRQLAS-------GSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSAD-GKHLVSGSKAGELQC  176 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat-------~~~d~~i~iwd~~~~~~~~~~~----~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~  176 (500)
                      ....+++|+++++++++       +..++.|.+||..+++......    ++...+.++.++++ |+++++. ..+.|.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~   96 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEE
Confidence            34578999999988887       5778899999987766432211    25567899999999 6655544 4457999


Q ss_pred             EeCCCCCcccc-cc--cC-cccceEEEEeeeeecCCCCceEEEEeCC---------------CcEEEEECCCCeEEEEec
Q 010816          177 WDPQTGKPSGN-PL--SG-HKKWITGISWEPVHLNAPCRRFVSASKD---------------GDARIWDVSLRKCVICLS  237 (500)
Q Consensus       177 wd~~~~~~~~~-~~--~~-~~~~v~~~~~~~~~~~~~~~~~~s~s~d---------------g~v~iwd~~~~~~~~~~~  237 (500)
                      ||.. ++.... ..  .+ ....+.++.+.+     ++..+++...+               +.|..||.. ++.... .
T Consensus        97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-----~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~  168 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-----EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-D  168 (314)
T ss_dssp             EETT-SCEEECCSBCTTSCBCBCCCEEEECT-----TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-E
T ss_pred             EeCC-CCEEEEEeccCCCccccCCcCEEECC-----CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-c
Confidence            9987 654221 10  11 112355666654     34455555444               456667655 443322 2


Q ss_pred             CccccEEEEEeC----CCC-eEEEE-eCCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCH
Q 010816          238 GHTLAVTCVKWG----GDG-VIYTG-SQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP  310 (500)
Q Consensus       238 ~h~~~v~~~~~~----~~~-~l~t~-~~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (500)
                      .+......++++    +++ .++.+ ..++.|.+||.. +++....                                  
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~----------------------------------  214 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK----------------------------------  214 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE----------------------------------
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc----------------------------------
Confidence            223345677888    887 45444 467888888864 2221100                                  


Q ss_pred             HHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeeccc-CcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816          311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ-QLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (500)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~-~~v~~l~~sp~g~~lasgs~Dg~i~lwd~  389 (500)
                                                     ..+.         .+.++. ..+..++++++|+++++...++.|.+||.
T Consensus       215 -------------------------------~~~~---------~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~  254 (314)
T 1pjx_A          215 -------------------------------KVWG---------HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             -------------------------------EEEE---------ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             -------------------------------eEEE---------ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence                                           0000         001111 33567899999998888888899999999


Q ss_pred             CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE-EEECCCcEEEEECCC
Q 010816          390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL-SGSKDSTLKVWDIRT  460 (500)
Q Consensus       390 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~s~d~~v~iwd~~~  460 (500)
                      .+++.+..+..+...+.++                           +++|+|+.|+ +...++.|..|++..
T Consensus       255 ~~g~~~~~~~~~~~~~~~i---------------------------~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          255 DGGQPKMRIRCPFEKPSNL---------------------------HFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEE---------------------------EECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCcEeEEEeCCCCCceeE---------------------------EECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            8787766665554444444                           5689999555 445668899999865

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.39  E-value=3.6e-10  Score=107.84  Aligned_cols=305  Identities=9%  Similarity=0.025  Sum_probs=184.9

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCceeEEecCC---------CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc
Q 010816          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGH---------KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (500)
Q Consensus       119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h---------~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  189 (500)
                      ++..+..++.++.|..+|..+++.+......         ...+.+. ...++..++.++.++.|..+|.++|+......
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            3667888888999999999999887655432         1223221 12245678888999999999999987542211


Q ss_pred             cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccE-----EEEEeCCCCeEEEEeCCCeEE
Q 010816          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-----TCVKWGGDGVIYTGSQDCTIK  264 (500)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~l~t~~~dg~i~  264 (500)
                      . .. .+.   -.|..   ....++.++.++.+..+|..+++.+..........     ...... ++.++.++.++.+.
T Consensus       131 ~-~~-~~~---~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~  201 (376)
T 3q7m_A          131 V-AG-EAL---SRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVS  201 (376)
T ss_dssp             C-SS-CCC---SCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEE
T ss_pred             C-CC-ceE---cCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEE
Confidence            1 10 010   01111   12467888899999999999998776654322111     111111 56788899999999


Q ss_pred             EEeCCCCeeEEEeecCCce----EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          265 VWETTQGKLIRELKGHGHW----VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       265 lwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      .+|..+|+.+.........    +..+.            +....                   .......++.++.++.
T Consensus       202 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~------------~~~~~-------------------p~~~~~~v~~~~~~g~  250 (376)
T 3q7m_A          202 AVLMEQGQMIWQQRISQATGSTEIDRLS------------DVDTT-------------------PVVVNGVVFALAYNGN  250 (376)
T ss_dssp             EEETTTCCEEEEEECCC-----------------------CCCCC-------------------CEEETTEEEEECTTSC
T ss_pred             EEECCCCcEEEEEecccCCCCccccccc------------ccCCC-------------------cEEECCEEEEEecCcE
Confidence            9999999887665422110    00000            00000                   0001246777888899


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCC
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS  420 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  420 (500)
                      +..+|....+......   ......+..  ++..+..++.++.|..+|..+|+.+-.........               
T Consensus       251 l~~~d~~tG~~~w~~~---~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~---------------  310 (376)
T 3q7m_A          251 LTALDLRSGQIMWKRE---LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL---------------  310 (376)
T ss_dssp             EEEEETTTCCEEEEEC---CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSC---------------
T ss_pred             EEEEECCCCcEEeecc---CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCc---------------
Confidence            9999976544322111   122333333  46678888899999999999998765443111100               


Q ss_pred             CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEE-EEEcCCCCEEEEEeCCCcEEEec
Q 010816          421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFA-VDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       421 ~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                                 .....  ..+..|+.++.+|.++.+|.++++.+.........+.. ...  .+..|+.++.||.|+.|+
T Consensus       311 -----------~~~~~--~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          311 -----------LTSPV--LYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             -----------CCCCE--EETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             -----------ccCCE--EECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence                       00001  13567888999999999999999876554432222221 112  246889999999999886

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.38  E-value=4.1e-11  Score=123.06  Aligned_cols=312  Identities=14%  Similarity=0.122  Sum_probs=182.5

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC----------E-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      +..|+.++.++.|.-+|..+++.+.....+...          + ..+..  ++..|+.++.|+.|..+|.++|+..-..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            566777888999999999999988776533210          0 11122  3568889999999999999999865322


Q ss_pred             ccC-cccceEEEEeeeeecCCCCceEEEEe------CCCcEEEEECCCCeEEEEecC--cc-------------------
Q 010816          189 LSG-HKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSG--HT-------------------  240 (500)
Q Consensus       189 ~~~-~~~~v~~~~~~~~~~~~~~~~~~s~s------~dg~v~iwd~~~~~~~~~~~~--h~-------------------  240 (500)
                      ... +......+...|.-.   ...++.++      .++.|+.||..+++.+..+..  +.                   
T Consensus       148 ~~~~~~~~~~~~~~sP~v~---~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  224 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVV---NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG  224 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred             cCcCCCCCCccccCCcEEE---CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence            111 111111111122111   23455443      378999999999998766531  00                   


Q ss_pred             ----------ccEEEEEeCC-CCeEEEEeCCCe-------------------EEEEeCCCCeeEEEeecCCceEEEEEec
Q 010816          241 ----------LAVTCVKWGG-DGVIYTGSQDCT-------------------IKVWETTQGKLIRELKGHGHWVNSLALS  290 (500)
Q Consensus       241 ----------~~v~~~~~~~-~~~l~t~~~dg~-------------------i~lwd~~~~~~~~~~~~~~~~v~~~~~~  290 (500)
                                .....+.+++ .+.++.++.++.                   |..+|..+|+.+..++...+........
T Consensus       225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~  304 (689)
T 1yiq_A          225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT  304 (689)
T ss_dssp             STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred             ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence                      0001345655 467888877763                   9999999999887765422111100000


Q ss_pred             CcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCc--------
Q 010816          291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL--------  362 (500)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~--------  362 (500)
                      ....+....                        +.+.....++.++.+|.++++|....+...........+        
T Consensus       305 ~~~~l~d~~------------------------~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          305 QHMILAELP------------------------IDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             SCEEEEEEE------------------------ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             CCcEEEeec------------------------cCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            000000000                        000011257788899999999976554321100000000        


Q ss_pred             ------------------------------EEEEEECCCCCEEEEEeC--------------------------------
Q 010816          363 ------------------------------VNHVYFSPDGQWVASASF--------------------------------  380 (500)
Q Consensus       363 ------------------------------v~~l~~sp~g~~lasgs~--------------------------------  380 (500)
                                                    -..++|+|+..++.+...                                
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                                          112788998887776532                                


Q ss_pred             -------------CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE
Q 010816          381 -------------DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG  447 (500)
Q Consensus       381 -------------Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~  447 (500)
                                   +|.|+.||+.+|+.+-.++.+....                            ...++..+.+++.|
T Consensus       441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~----------------------------~g~~~tagglvf~g  492 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN----------------------------GGTLSTAGNLVFEG  492 (689)
T ss_dssp             SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC----------------------------CCEEEETTTEEEEE
T ss_pred             cccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc----------------------------CccceECCCEEEEE
Confidence                         3678888888888765554332110                            00235578899999


Q ss_pred             ECCCcEEEEECCCccccccccCcccC-EEEEEEcCCCCEEEE
Q 010816          448 SKDSTLKVWDIRTQKLKQDLPGHADE-VFAVDWSPDGEKVAS  488 (500)
Q Consensus       448 s~d~~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~dg~~l~s  488 (500)
                      +.|+.++.||.++++++.++....+. ..-+.|+.||+..+.
T Consensus       493 t~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          493 SADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            99999999999999988665433221 133567778875443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.36  E-value=1.7e-11  Score=115.32  Aligned_cols=169  Identities=11%  Similarity=0.082  Sum_probs=129.3

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc-----------eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~-----------~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      ++..+++++...++++|+.++ +++|++.+..           +.... .+.. |+.|+|  |++.|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            688999999999999999985 6669864322           21222 3566 999999  89999998 889999999


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEe
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS  258 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~  258 (500)
                      +.+... ......|+..+.++.+.+.       .+++++.||.+.+||+..++...    +...|+|++|+++| ++.|.
T Consensus       113 v~sl~~-~~~~~~~~~~v~~i~~~~p-------~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~vg~  179 (388)
T 1xip_A          113 LEELSE-FRTVTSFEKPVFQLKNVNN-------TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAVLL  179 (388)
T ss_dssp             SSSTTC-EEEEEECSSCEEEEEECSS-------EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEEEE
T ss_pred             chhhhc-cCccceeecceeeEEecCC-------CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEEEE
Confidence            876542 2234456666777665431       38899999999999999877643    45689999999999 78899


Q ss_pred             CCCeEEEEeCCCCee--EEEe------e---cCCceEEEEEecCcceeee
Q 010816          259 QDCTIKVWETTQGKL--IREL------K---GHGHWVNSLALSTEYALRT  297 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~~~  297 (500)
                      .||++++|+...+..  .+++      .   +|...|.++.+.+++.+..
T Consensus       180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv  229 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA  229 (388)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred             cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence            999999998877765  5555      2   3678899999998765544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.34  E-value=2e-09  Score=98.99  Aligned_cols=224  Identities=11%  Similarity=0.039  Sum_probs=143.9

Q ss_pred             ceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeE
Q 010816          195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI  274 (500)
Q Consensus       195 ~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~  274 (500)
                      .-.+..|.|.    ....+++...++.|..||..+++... + .....+.++++++++.++.+. ++.|.+||..+++..
T Consensus        14 ~~Egp~w~~~----~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           14 CGESPVWEEV----SNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             BEEEEEEETT----TTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEE
T ss_pred             cccCCeEECC----CCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEE
Confidence            3456777652    23456677778999999998776532 2 234568899999998877776 568999999887654


Q ss_pred             EEeec----CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-----------CCC
Q 010816          275 RELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-----------DDF  339 (500)
Q Consensus       275 ~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-----------~d~  339 (500)
                      .....    ....+..++++++..                                    .+++..           ..+
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~------------------------------------l~~~~~~~~~~~~~~~~~~~  130 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGR------------------------------------YFAGTMAEETAPAVLERHQG  130 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSC------------------------------------EEEEEEECCSBTTBCCTTCE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCC------------------------------------EEEecCCcccccccccCCCc
Confidence            33221    123455666655432                                    222211           122


Q ss_pred             eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE-EEEeCCCcEEEEeC--CCCceEE--EE---eCCcccEEEEEee
Q 010816          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNG--TTGKFVA--VF---RGHVGPVYQIRFE  411 (500)
Q Consensus       340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l-asgs~Dg~i~lwd~--~~~~~~~--~~---~~h~~~v~~~~~~  411 (500)
                      .|+.++..  . ....+..+....+.++|+||++.| ++.+.++.|.+|++  .+|....  .+   ..+.+.       
T Consensus       131 ~l~~~d~~--g-~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~-------  200 (297)
T 3g4e_A          131 ALYSLFPD--H-HVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI-------  200 (297)
T ss_dssp             EEEEECTT--S-CEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE-------
T ss_pred             EEEEEECC--C-CEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCC-------
Confidence            34444432  1 122233344567899999999866 55566889999986  4565321  11   111111       


Q ss_pred             eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEc-CCCCEEEEEe
Q 010816          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASGG  490 (500)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s-~dg~~l~s~~  490 (500)
                                          ...+++.++|++.++...++.|.+||..+++.+..+..+...+++++|. ||++.|+.++
T Consensus       201 --------------------p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          201 --------------------PDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             --------------------EEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             --------------------CCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence                                1123568899988888888899999999888888777777789999998 8988876655


Q ss_pred             C
Q 010816          491 K  491 (500)
Q Consensus       491 ~  491 (500)
                      .
T Consensus       261 ~  261 (297)
T 3g4e_A          261 A  261 (297)
T ss_dssp             B
T ss_pred             C
Confidence            4

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.33  E-value=4.9e-09  Score=99.37  Aligned_cols=274  Identities=10%  Similarity=-0.014  Sum_probs=162.6

Q ss_pred             cCCCCEEEEEeC--CC---eEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEe----------CCCcEE
Q 010816          159 SADGKHLVSGSK--AG---ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----------KDGDAR  223 (500)
Q Consensus       159 s~~~~~l~s~~~--d~---~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s----------~dg~v~  223 (500)
                      .|++++++++..  ..   +|.++|..+++.....-.+ ...  .+.++|     +++++..+.          .++.|.
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~sp-----Dg~~lyv~n~~~~~~~rg~~~~~v~  100 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAH-----SGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECC-----CCCEEEEEeccccccccCCCCCeEE
Confidence            467777766553  22   8899999988765432222 222  566555     455665554          367899


Q ss_pred             EEECCCCeEEEEecCc-------cccEEEEEeCCCCe-EEEEeC--CCeEEEEeCCCCeeEEE-eecCCceEEEEEecCc
Q 010816          224 IWDVSLRKCVICLSGH-------TLAVTCVKWGGDGV-IYTGSQ--DCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTE  292 (500)
Q Consensus       224 iwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~-l~t~~~--dg~i~lwd~~~~~~~~~-~~~~~~~v~~~~~~~~  292 (500)
                      +||..+.+.+..+.-.       ...-..+.+++||. |+.+..  ++.|.++| .+++.+.. +.....    +.+.+.
T Consensus       101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~----~~~~~~  175 (373)
T 2mad_H          101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC----YHIHPG  175 (373)
T ss_pred             EEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce----EEEEeC
Confidence            9999887766554211       11234678999874 665553  57899999 99887766 442221    111111


Q ss_pred             ceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee-----eecccCcEEEEE
Q 010816          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-----MTGHQQLVNHVY  367 (500)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~-----~~~h~~~v~~l~  367 (500)
                                                         ....+++.+.|+.+.++|. ..+.....     ..+.........
T Consensus       176 -----------------------------------~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~  219 (373)
T 2mad_H          176 -----------------------------------APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA  219 (373)
T ss_pred             -----------------------------------CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence                                               1234566777888888887 33221010     011111123355


Q ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCce--EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE
Q 010816          368 FSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL  445 (500)
Q Consensus       368 ~sp~g~~lasgs~Dg~i~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  445 (500)
                      +.+++..++..+.++.+.+.|..++..  +..+.-.........+                 .......++++|+++.++
T Consensus       220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~-----------------~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW-----------------RPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccce-----------------ecCceEeEEECCCCCEEE
Confidence            677665555555788999999876532  2222110000000000                 001111235689988877


Q ss_pred             EEEC----------CCcEEEEECCCccccccccCcccCEEEEEEcCCCC-EEEEEe-CCCcEEEec
Q 010816          446 SGSK----------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGG-KDRVLKLWM  499 (500)
Q Consensus       446 s~s~----------d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~s~~-~D~~v~iW~  499 (500)
                      .+..          ++.|.++|+.+++.+..++.. ...+++.|+|||+ .++++. .++.|.+++
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD  347 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            7653          357999999999988777532 3578999999999 788877 589999886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.29  E-value=2.7e-09  Score=102.62  Aligned_cols=249  Identities=10%  Similarity=0.029  Sum_probs=150.7

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC--cEEEEECC
Q 010816          151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--DARIWDVS  228 (500)
Q Consensus       151 ~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg--~v~iwd~~  228 (500)
                      .....|+|+++++++++...++.|+.||+.++..... ..... ... +.|.+     +.+.++.+..++  .|.+++..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~-~~~~~-~~~-ia~~~-----~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV-HPGFK-GGK-PAVTK-----DKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE-EETCC-BCB-CEECT-----TSSEEEEEBSSTTCEEEEEEGG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe-eccCC-CCc-eeEec-----CCCcEEEEecCCCceEEEEEcC
Confidence            3578999999998778877789999999987654321 11111 112 55544     445667776655  78888876


Q ss_pred             CCeEEEEe----cCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEE----eecCCceE--EEEEecCcceeee
Q 010816          229 LRKCVICL----SGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRE----LKGHGHWV--NSLALSTEYALRT  297 (500)
Q Consensus       229 ~~~~~~~~----~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~----~~~~~~~v--~~~~~~~~~~~~~  297 (500)
                      .+.....+    ........++++++ ++.|+.+..++.|+.||..++.....    ..+....-  ..+++++.     
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~-----  277 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV-----  277 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETT-----
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCC-----
Confidence            55433333    21344567788888 78888888889999999887653221    11111111  14444432     


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc---------------cCc
Q 010816          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH---------------QQL  362 (500)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h---------------~~~  362 (500)
                                                    .+..+++...++.|+.|+....   ...+.++               -..
T Consensus       278 ------------------------------~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~  324 (409)
T 3hrp_A          278 ------------------------------DSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQ  324 (409)
T ss_dssp             ------------------------------TTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSS
T ss_pred             ------------------------------CCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCC
Confidence                                          1234556666788888875432   2222232               245


Q ss_pred             EEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC
Q 010816          363 VNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS  441 (500)
Q Consensus       363 v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  441 (500)
                      ...++++|+|+++++-+ .++.|+.|++.+|+.. ++.++.+. .  .+        .... .....-.....++++++|
T Consensus       325 P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~-~--g~--------~~g~-~~~~~~~~P~giavd~~g  391 (409)
T 3hrp_A          325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDV-A--SQ--------IDGT-PLEATFNYPYDICYDGEG  391 (409)
T ss_dssp             EEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTC-B--SC--------CCBS-TTTCCBSSEEEEEECSSS
T ss_pred             CeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCC-C--Cc--------CCCC-hhceEeCCceEEEEcCCC
Confidence            78999999999888887 8899999998777643 33333110 0  00        0000 000000122345778998


Q ss_pred             CEEEEEECCCcEEEEEC
Q 010816          442 RLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       442 ~~l~s~s~d~~v~iwd~  458 (500)
                      .++++-..++.|+.+++
T Consensus       392 ~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          392 GYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEESTTCEEEEEEE
T ss_pred             CEEEEECCCCeEEEEEe
Confidence            88888888888888765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.28  E-value=2.4e-09  Score=102.11  Aligned_cols=282  Identities=14%  Similarity=0.064  Sum_probs=169.2

Q ss_pred             CCCCeEEEEeC-C----CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCC
Q 010816          118 PDGRQLASGSG-D----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTG  182 (500)
Q Consensus       118 p~~~~lat~~~-d----~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------~d~~i~~wd~~~~  182 (500)
                      |++++++.... +    +.|.++|..+.+.+..+..-..+  .+.++|||++|+.+.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            46666665544 3    69999999999888777644455  799999999888775          3678999999988


Q ss_pred             CcccccccC-cc-----cceEEEEeeeeecCCCCceEEEEeC--CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeE
Q 010816          183 KPSGNPLSG-HK-----KWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI  254 (500)
Q Consensus       183 ~~~~~~~~~-~~-----~~v~~~~~~~~~~~~~~~~~~s~s~--dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l  254 (500)
                      +.......+ ..     ..-..+.+     ..++++++.+..  ++.|.+.|+.+++.+..+.-..  ...+.-.....+
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~-----spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~~~~~p~g~~~~  232 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNAL-----TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--CYHIFPASPTVF  232 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEE-----CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEETTEE
T ss_pred             cEEEEEECCCccccccCCCcceEEE-----cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--ceeeccCCCcEE
Confidence            754432111 00     01122333     346667776653  5789999999998877664311  111111122356


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (500)
Q Consensus       255 ~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (500)
                      ++.+.||.+.+.+..+++......    .+..  .... .+.        ..                ......+..++.
T Consensus       233 v~~~~dG~~~~V~~~~~~v~~~~~----~~~~--v~~~-p~~--------~~----------------~~~~~dg~~~~~  281 (426)
T 3c75_H          233 YMNCRDGSLARVDFADGETKVTNT----EVFH--TEDE-LLI--------NH----------------PAFSLRSGRLVW  281 (426)
T ss_dssp             EEEETTSSEEEEECCTTCCEEEEC----CCCS--CTTS-CBC--------SC----------------CEECTTTCEEEE
T ss_pred             EEEcCCCCEEEEECCCCcEEEEee----eeec--cCCC-cee--------eE----------------eeecCCCCEEEE
Confidence            677788888888886655443211    0000  0000 000        00                000111234444


Q ss_pred             eeCCCeEEEEcCCCCCC----Cceee------ec-ccCcEEEEEECCCCCEEEEEeC----------CCcEEEEeCCCCc
Q 010816          335 GSDDFTMFLWEPAVSKQ----PKTRM------TG-HQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGK  393 (500)
Q Consensus       335 ~s~d~~v~~wd~~~~~~----~~~~~------~~-h~~~v~~l~~sp~g~~lasgs~----------Dg~i~lwd~~~~~  393 (500)
                      .+..+.+.+.|......    .....      .+ .......++++|+++.+.+...          ++.|.+.|..+++
T Consensus       282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k  361 (426)
T 3c75_H          282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE  361 (426)
T ss_dssp             EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence            45677888888643221    00000      00 0111113689999887665532          3579999999999


Q ss_pred             eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEEECCCccccccc
Q 010816          394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDL  467 (500)
Q Consensus       394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iwd~~~~~~~~~~  467 (500)
                      .+..+..-.. -                           ..++|+|||+ +++++. .++.|.++|+.+++.++.+
T Consensus       362 vv~~I~vg~~-P---------------------------~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          362 RINKIELGHE-I---------------------------DSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEEEEEE-E---------------------------CEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCC-c---------------------------CeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            8876642111 1                           1236799999 888888 5899999999999988775

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.26  E-value=6.6e-10  Score=104.07  Aligned_cols=241  Identities=13%  Similarity=0.084  Sum_probs=150.6

Q ss_pred             EEEEcCCCCeEEEEe----------CCCcEEEEeCCCCceeEEecCC-------CCCEEEEEEcCCCCEEEEEeC--CCe
Q 010816          113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKHLVSGSK--AGE  173 (500)
Q Consensus       113 ~~~~sp~~~~lat~~----------~d~~i~iwd~~~~~~~~~~~~h-------~~~v~~v~~s~~~~~l~s~~~--d~~  173 (500)
                      .++++|||++|+.++          .++.|.+||..+.+.+..+.-.       ......+.|+|||++|+.+..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999887765          3678999999998887665321       123456899999999888764  689


Q ss_pred             EEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEEEEecCcc----ccEE-EEE
Q 010816          174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHT----LAVT-CVK  247 (500)
Q Consensus       174 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~h~----~~v~-~~~  247 (500)
                      |.++|+.+++.....-....     ....|..    .+.|++.+.||.+.+.++.. ++.......+.    .++. ...
T Consensus       162 VsVID~~t~~vv~tI~v~g~-----~~~~P~g----~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~  232 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPDC-----YHIFPTA----PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA  232 (386)
T ss_dssp             EEEEETTTTEEEEEEECCSE-----EEEEEEE----TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCE
T ss_pred             EEEEECCCCcEEEEEECCCc-----ceeecCC----CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccce
Confidence            99999998875543211110     1112322    35678889999999999976 55432221111    1111 124


Q ss_pred             e-CCCCeEEEEeCCCeEEEEeCCCCee--EEEeec-C-----Cc----eEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816          248 W-GGDGVIYTGSQDCTIKVWETTQGKL--IRELKG-H-----GH----WVNSLALSTEYALRTGAFDHTGKQYSSPEEMK  314 (500)
Q Consensus       248 ~-~~~~~l~t~~~dg~i~lwd~~~~~~--~~~~~~-~-----~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (500)
                      | .++|.++..+.+|.|.+.|..++..  ...+.. .     ..    ....++++++                      
T Consensus       233 ~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~----------------------  290 (386)
T 3sjl_D          233 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA----------------------  290 (386)
T ss_dssp             EETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT----------------------
T ss_pred             eEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC----------------------
Confidence            4 3577766678899999999876532  221110 0     00    0011222211                      


Q ss_pred             HHHHHhhhhhcCCCCcEEEEeeC----------CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC-EEEEE-eCCC
Q 010816          315 KAALERYNKIKGNAPERLVSGSD----------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASA-SFDK  382 (500)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~s~s~----------d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~lasg-s~Dg  382 (500)
                                    ..++.....          .+.|.+.|....+.......++  .+..|++++|++ +|++. ..++
T Consensus       291 --------------~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~  354 (386)
T 3sjl_D          291 --------------LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDK  354 (386)
T ss_dssp             --------------TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTT
T ss_pred             --------------CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCC
Confidence                          223333221          2468888877655444444443  578999999996 66554 5589


Q ss_pred             cEEEEeCCCCceEEEEeC
Q 010816          383 SIKLWNGTTGKFVAVFRG  400 (500)
Q Consensus       383 ~i~lwd~~~~~~~~~~~~  400 (500)
                      .|.++|..+++.+.+++.
T Consensus       355 ~VsViD~~t~k~~~~i~~  372 (386)
T 3sjl_D          355 TLYIHDAESGEELRSVNQ  372 (386)
T ss_dssp             EEEEEETTTCCEEEEECC
T ss_pred             eEEEEECCCCcEEEEecC
Confidence            999999999998887653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.26  E-value=1.6e-10  Score=108.60  Aligned_cols=172  Identities=11%  Similarity=-0.025  Sum_probs=108.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe
Q 010816          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK  231 (500)
Q Consensus       152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~  231 (500)
                      .+..+++++...++++|+.+ .+.+|++++.+...   ......     +.+                           .
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~---~~~~~~-----~~~---------------------------~   82 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHI---TSDSTP-----LTF---------------------------K   82 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHH---HSSSCC-----CCC---------------------------S
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhh---cccccc-----ccc---------------------------e
Confidence            57889999999999999987 45569865322100   000000     000                           0


Q ss_pred             EEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHH
Q 010816          232 CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (500)
Q Consensus       232 ~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (500)
                      ..   ..+.. |+.++| .+..|+++ .++.|++||+.+-........+...+..+...+                    
T Consensus        83 ~~---~~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~--------------------  136 (388)
T 1xip_A           83 WE---KEIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN--------------------  136 (388)
T ss_dssp             EE---EECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS--------------------
T ss_pred             EE---eeCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC--------------------
Confidence            00   11333 677777 66777777 777888888765555555555555554443221                    


Q ss_pred             HHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010816          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT  391 (500)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~  391 (500)
                                       + .++.++.||.+.+||+......     .+...|.|++|||+|  ++.|..||++++|+...
T Consensus       137 -----------------p-~~av~~~dG~L~v~dl~~~~~~-----~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~  191 (388)
T 1xip_A          137 -----------------N-TLVILNSVNDLSALDLRTKSTK-----QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN  191 (388)
T ss_dssp             -----------------S-EEEEEETTSEEEEEETTTCCEE-----EEEESEEEEEECSSE--EEEEETTSCEEEEEEET
T ss_pred             -----------------C-CEEEEECCCCEEEEEccCCccc-----cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCC
Confidence                             1 2677788888888887543321     244679999999999  78899999999999887


Q ss_pred             Cce--EEEE------e---CCcccEEEEEe
Q 010816          392 GKF--VAVF------R---GHVGPVYQIRF  410 (500)
Q Consensus       392 ~~~--~~~~------~---~h~~~v~~~~~  410 (500)
                      +++  ..++      .   +|...|.++.+
T Consensus       192 ~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~w  221 (388)
T 1xip_A          192 GEMEKQFEFSLPSELEELPVEEYSPLSVTI  221 (388)
T ss_dssp             TEEEEEEEECCCHHHHTSCTTTSEEEEEEE
T ss_pred             ccccccceecCCcccccccCCCeeEEEEEE
Confidence            775  5555      2   35666666643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.26  E-value=1e-08  Score=95.55  Aligned_cols=220  Identities=12%  Similarity=0.087  Sum_probs=135.9

Q ss_pred             EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEE
Q 010816          197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRE  276 (500)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~  276 (500)
                      .+..|.|.    ....+++...++.|..||..+++... +. ....+.++.|++++.++.++.+ .|.+||..+++....
T Consensus        52 egp~~~~~----~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           52 EGPTFDPA----SGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLH  124 (326)
T ss_dssp             EEEEEETT----TTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEE
T ss_pred             cCCeEeCC----CCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEE
Confidence            45666652    23456677778899999998776432 22 2356889999999987777755 499999888765432


Q ss_pred             eec----CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC------CCeEEEEcC
Q 010816          277 LKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD------DFTMFLWEP  346 (500)
Q Consensus       277 ~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~------d~~v~~wd~  346 (500)
                      ...    ....+..++++++..                                    .+++...      .+.|+.++ 
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~------------------------------------l~v~~~~~~~~~~~~~l~~~~-  167 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGA------------------------------------LWIGTMGRKAETGAGSIYHVA-  167 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSC------------------------------------EEEEEEETTCCTTCEEEEEEE-
T ss_pred             eeCCCCCCCCCCCCEEECCCCC------------------------------------EEEEeCCCcCCCCceEEEEEe-
Confidence            221    123456666665432                                    2222221      23444444 


Q ss_pred             CCCCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCC--CC-ce-----EEEEeCCcccEEEEEeeeeeeec
Q 010816          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGT--TG-KF-----VAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~--~~-~~-----~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                      .  . ....+..+....+.++|+|||+.|+.+ +.++.|.+||+.  +| +.     +..+....+..            
T Consensus       168 ~--g-~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p------------  232 (326)
T 2ghs_A          168 K--G-KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM------------  232 (326)
T ss_dssp             T--T-EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE------------
T ss_pred             C--C-cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCC------------
Confidence            1  1 112222333457899999999876544 557899999985  55 32     11111111111            


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEc-CCCCEEEEEeC
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASGGK  491 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s-~dg~~l~s~~~  491 (500)
                                     ..+.+.++|.+.++...++.|.+||. .++....+..+...+++++|+ |+++.|+.++.
T Consensus       233 ---------------~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          233 ---------------DGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             ---------------EEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             ---------------CeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence                           12356788988887777789999998 566656665566679999998 89887755543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.25  E-value=1.1e-09  Score=112.35  Aligned_cols=310  Identities=13%  Similarity=0.121  Sum_probs=180.3

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCceeEEecCCCC-----------CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN-----------WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~-----------~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      +..|+.++.++.|.-+|..+++.+........           ....+++  ++..|+.++.|+.|..+|..+|+.....
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            55677777889999999999988877653321           0012222  4568889999999999999999864322


Q ss_pred             ccC-cccceEEEEeeeeecCCCCceEEEEeC------CCcEEEEECCCCeEEEEecCcccc-------------------
Q 010816          189 LSG-HKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLA-------------------  242 (500)
Q Consensus       189 ~~~-~~~~v~~~~~~~~~~~~~~~~~~s~s~------dg~v~iwd~~~~~~~~~~~~h~~~-------------------  242 (500)
                      ... .......+.-.|..   ....++.++.      ++.|+.+|..+++.+..+......                   
T Consensus       155 ~~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~  231 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP  231 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred             cCCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence            111 00000011111211   1234555543      789999999999987665421110                   


Q ss_pred             -------------EEEEEeCCC-CeEEEEeCCC-------------------eEEEEeCCCCeeEEEeecCCc--eEEEE
Q 010816          243 -------------VTCVKWGGD-GVIYTGSQDC-------------------TIKVWETTQGKLIRELKGHGH--WVNSL  287 (500)
Q Consensus       243 -------------v~~~~~~~~-~~l~t~~~dg-------------------~i~lwd~~~~~~~~~~~~~~~--~v~~~  287 (500)
                                   ...++++++ +.++.+..++                   +|..+|..+|+.+..++...+  +-...
T Consensus       232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~  311 (677)
T 1kb0_A          232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS  311 (677)
T ss_dssp             GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence                         013455543 5677776654                   599999999998876653221  10000


Q ss_pred             EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccC------
Q 010816          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ------  361 (500)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~------  361 (500)
                      ...+  .+....                        ..+.....++.++.+|.++++|....+...........      
T Consensus       312 ~~~p--~l~~~~------------------------~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d  365 (677)
T 1kb0_A          312 TQPM--ILADIK------------------------IAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD  365 (677)
T ss_dssp             CSCC--EEEEEE------------------------ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred             CCCc--EEEecc------------------------cCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence            0000  000000                        00000145788899999999997665432111100000      


Q ss_pred             ----cE------------------------EEEEECCCCCEEEEEeCC--------------------------------
Q 010816          362 ----LV------------------------NHVYFSPDGQWVASASFD--------------------------------  381 (500)
Q Consensus       362 ----~v------------------------~~l~~sp~g~~lasgs~D--------------------------------  381 (500)
                          .+                        ..++|+|++.++.+...+                                
T Consensus       366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~  445 (677)
T 1kb0_A          366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF  445 (677)
T ss_dssp             TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred             CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence                01                        156889988888775432                                


Q ss_pred             -----------CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC
Q 010816          382 -----------KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD  450 (500)
Q Consensus       382 -----------g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d  450 (500)
                                 |.|..||+.+|+.+-.++... +...                           ..++.++.+++.++.|
T Consensus       446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~---------------------------g~~~~~g~~v~~g~~d  497 (677)
T 1kb0_A          446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNG---------------------------GTLTTAGNVVFQGTAD  497 (677)
T ss_dssp             ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCC---------------------------CEEEETTTEEEEECTT
T ss_pred             cccccCCCCCccEEEEEeCCCCcEEeecCCCC-CCcC---------------------------cceEeCCCEEEEECCC
Confidence                       678889998888765543211 1000                           0235577888889999


Q ss_pred             CcEEEEECCCccccccccCcc-cCEEEEEEcCCCCEEEE
Q 010816          451 STLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGEKVAS  488 (500)
Q Consensus       451 ~~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l~s  488 (500)
                      +.+++||.++++.+..+.-.. ....-+.|+.+|+.++.
T Consensus       498 g~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          498 GRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            999999999999887664322 12233456778875544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.22  E-value=8e-10  Score=114.20  Aligned_cols=243  Identities=14%  Similarity=0.084  Sum_probs=145.6

Q ss_pred             cCCcccEEEEEEcCCCCeEEEE-----eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCC-------
Q 010816          105 AGHTEAVLSVAFSPDGRQLASG-----SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG-------  172 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~-----~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~-------  172 (500)
                      .+|...+..++|||||++||-+     +.+.+|++||+.+++.+... .+......++|+ ||+.|+.++.+.       
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence            3567789999999999999843     33367999999998865321 111112567899 999999888774       


Q ss_pred             ------eEEEEeCCCCCcccccc---cC-cccceEEEEeeeeecCCCCceEE-EEe---CCCcEEEEECCCCe-EEEEec
Q 010816          173 ------ELQCWDPQTGKPSGNPL---SG-HKKWITGISWEPVHLNAPCRRFV-SAS---KDGDARIWDVSLRK-CVICLS  237 (500)
Q Consensus       173 ------~i~~wd~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~~~~~~~-s~s---~dg~v~iwd~~~~~-~~~~~~  237 (500)
                            .|.+|++.++......+   .. |.....++.|+|     +++.++ +.+   .+..++++|+..+. ....+.
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~  277 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-----DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ  277 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-----TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-----CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence                  39999988765322112   22 344566777765     445543 333   23589999987653 334444


Q ss_pred             CccccEEEEEeCCCCeE-EEEeCC---CeEEEEeCCCCee--EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHH
Q 010816          238 GHTLAVTCVKWGGDGVI-YTGSQD---CTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (500)
Q Consensus       238 ~h~~~v~~~~~~~~~~l-~t~~~d---g~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (500)
                      .+...........++.| +....+   +.|..+|+.++..  .+.+..+...+.  .++++                   
T Consensus       278 ~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~-------------------  336 (693)
T 3iuj_A          278 GDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG-------------------  336 (693)
T ss_dssp             CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE-------------------
T ss_pred             CCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE-------------------
Confidence            45444433322223344 344333   5788999887643  234444433332  33322                   


Q ss_pred             HHHHHHHHhhhhhcCCCCcEEEE-eeCCC--eEEEEcCCCCCCCceee-ecccCcEEEEEECCCCCEEEEEeCC----Cc
Q 010816          312 EMKKAALERYNKIKGNAPERLVS-GSDDF--TMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFD----KS  383 (500)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~s-~s~d~--~v~~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~lasgs~D----g~  383 (500)
                                       ++.++. ...++  .|++|++...  ....+ ......+..+.++|++..|+....+    +.
T Consensus       337 -----------------g~~lv~~~~~~g~~~l~~~d~~g~--~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~  397 (693)
T 3iuj_A          337 -----------------SGYLFAEYMVDATARVEQFDYEGK--RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPT  397 (693)
T ss_dssp             -----------------TTEEEEEEEETTEEEEEEECTTSC--EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred             -----------------CCEEEEEEEECCeeEEEEEECCCC--eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCE
Confidence                             223443 34454  5788886532  11222 2234567778888888776655444    78


Q ss_pred             EEEEeCCCCce
Q 010816          384 IKLWNGTTGKF  394 (500)
Q Consensus       384 i~lwd~~~~~~  394 (500)
                      |+.||+.+++.
T Consensus       398 l~~~d~~~g~~  408 (693)
T 3iuj_A          398 LYRFEPKSGAI  408 (693)
T ss_dssp             EEEECTTTCCE
T ss_pred             EEEEECCCCeE
Confidence            99999988764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.21  E-value=1.9e-08  Score=92.34  Aligned_cols=215  Identities=11%  Similarity=0.116  Sum_probs=128.5

Q ss_pred             EEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc-
Q 010816          111 VLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-  188 (500)
Q Consensus       111 V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-  188 (500)
                      --+..|+|++. ++++...++.|..||..++... .+ .....+.+++++++|+++++.  ++.|.+||..+++..... 
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEe
Confidence            34678899654 5566667899999999876542 22 245679999999999965553  578999999877532111 


Q ss_pred             c-cC-cccceEEEEeeeeecCCCCceEEEEeC---------CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-E
Q 010816          189 L-SG-HKKWITGISWEPVHLNAPCRRFVSASK---------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-Y  255 (500)
Q Consensus       189 ~-~~-~~~~v~~~~~~~~~~~~~~~~~~s~s~---------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~  255 (500)
                      . .+ ....+..+.+.|     +++.+++...         ...-.+|.+.....+..+..+......++|++++. + +
T Consensus        91 ~~~~~~~~~~~di~~d~-----dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDP-----AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             CCTTCSSEEEEEEEECT-----TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred             cCCCCCCCCCCCEEECC-----CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence            0 00 112345555543     3444443321         12345555442211222222233446788888773 4 4


Q ss_pred             EEeCCCeEEEEeC--CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816          256 TGSQDCTIKVWET--TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (500)
Q Consensus       256 t~~~dg~i~lwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (500)
                      +.+.++.|.+||+  .+|.....                                                     ..++
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~-----------------------------------------------------~~~~  192 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNR-----------------------------------------------------RSVY  192 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEE-----------------------------------------------------EEEE
T ss_pred             ecCCCCcEEEEeccCCCCcccCc-----------------------------------------------------EEEE
Confidence            4556778888875  33332100                                                     0000


Q ss_pred             EeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816          334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (500)
Q Consensus       334 s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~  408 (500)
                                 +          +..+......++++++|++.++...++.|..||..+|+.+..+..+...+.++
T Consensus       193 -----------~----------~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~  246 (297)
T 3g4e_A          193 -----------K----------LEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSC  246 (297)
T ss_dssp             -----------E----------CCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEE
T ss_pred             -----------E----------CCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEE
Confidence                       0          01112346678999999988888788899999999999988877665555555

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.20  E-value=1.2e-08  Score=98.00  Aligned_cols=234  Identities=12%  Similarity=0.123  Sum_probs=148.0

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCCccc
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSG  186 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~--~i~~wd~~~~~~~~  186 (500)
                      .....++|+|+++++++...++.|++||..++.......... ... ++|+++++.|+++..++  .|.+|+...+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            467899999999988887788999999998776544433322 233 99999999999888866  78888876554311


Q ss_pred             cc--c-cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE----ecCccccE--EEEEeCC-CCeEEE
Q 010816          187 NP--L-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC----LSGHTLAV--TCVKWGG-DGVIYT  256 (500)
Q Consensus       187 ~~--~-~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~----~~~h~~~v--~~~~~~~-~~~l~t  256 (500)
                      ..  . ........++++.|     ....+..+..++.|+.||...+.....    ..++...-  ..++|++ ++.|+.
T Consensus       209 ~~g~~~~~~~~~p~~iav~p-----~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDE-----TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECT-----TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             EeeeccchhcCCcEEEEEeC-----CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            11  0 11223345566554     223455567788999999987654332    22222222  2788988 466555


Q ss_pred             E-eCCCeEEEEeCCCCeeEEEeecCC---------------ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHh
Q 010816          257 G-SQDCTIKVWETTQGKLIRELKGHG---------------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (500)
Q Consensus       257 ~-~~dg~i~lwd~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (500)
                      + ..++.|+.|+....  +..+.++.               .....++++++                            
T Consensus       284 ~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d----------------------------  333 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED----------------------------  333 (409)
T ss_dssp             EETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT----------------------------
T ss_pred             EeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC----------------------------
Confidence            4 56788999986532  22222221               11222333222                            


Q ss_pred             hhhhcCCCCcEEEEee-CCCeEEEEcCCCCCCCceeeecc---------------cCcEEEEEECCCCCEEEEEeCCCcE
Q 010816          321 YNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGH---------------QQLVNHVYFSPDGQWVASASFDKSI  384 (500)
Q Consensus       321 ~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~~~~~~~~~~h---------------~~~v~~l~~sp~g~~lasgs~Dg~i  384 (500)
                              +..+++-+ .++.|+.|++....  ...+.++               -.....++++++|.++++-..++.|
T Consensus       334 --------G~lyvad~~~~~~I~~~~~~~G~--v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~I  403 (409)
T 3hrp_A          334 --------GNFYIVDGFKGYCLRKLDILDGY--VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAI  403 (409)
T ss_dssp             --------CCEEEEETTTTCEEEEEETTTTE--EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEE
T ss_pred             --------CCEEEEeCCCCCEEEEEECCCCE--EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeE
Confidence                    34556666 78889999853321  2233333               2458899999999888888888888


Q ss_pred             EEEeC
Q 010816          385 KLWNG  389 (500)
Q Consensus       385 ~lwd~  389 (500)
                      +.+++
T Consensus       404 r~i~~  408 (409)
T 3hrp_A          404 RKYAV  408 (409)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.18  E-value=1.2e-09  Score=102.69  Aligned_cols=269  Identities=12%  Similarity=0.018  Sum_probs=153.7

Q ss_pred             CCEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCcccc-----cccCcccceEEEEeeeeecCCCCceEEEEeC-----
Q 010816          151 NWVLCIAWSADGKHLVSGS--KAGELQCWDPQTGKPSGN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASK-----  218 (500)
Q Consensus       151 ~~v~~v~~s~~~~~l~s~~--~d~~i~~wd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~-----  218 (500)
                      ..+..++++++|+++++..  .++.++||.+.+++....     ...++-..+.++.+.+     +++.+++-..     
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~-----~g~L~v~D~g~~~~~   91 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDG-----NGIVWMLDNGNQSKS   91 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECS-----SSEEEEEECHHHHTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcC-----CCcEEEEcCCCCcCC
Confidence            6789999999999988864  234356665544432211     1122345667777654     2334444333     


Q ss_pred             CCcEEEEECCCCeEEEEecC------ccccEEEEEeCCC-CeEEE-Ee---CCCeEEEEeCCCCeeEEEeecCCceEE-E
Q 010816          219 DGDARIWDVSLRKCVICLSG------HTLAVTCVKWGGD-GVIYT-GS---QDCTIKVWETTQGKLIRELKGHGHWVN-S  286 (500)
Q Consensus       219 dg~v~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~-~~l~t-~~---~dg~i~lwd~~~~~~~~~~~~~~~~v~-~  286 (500)
                      +..|.+||+.+++.+..+.-      +......++++++ +.++. ..   .++.|.+||+.+++..+.+..|..... .
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence            57899999998886655432      1234567888854 55544 44   578999999988876665543211000 0


Q ss_pred             EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEE
Q 010816          287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV  366 (500)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l  366 (500)
                      ..+..                                    .+..+.+.+.++.+..|.               ..++.+
T Consensus       172 ~~~~~------------------------------------~g~~~~~~~~~g~~~~~~---------------~~~~gi  200 (343)
T 2qe8_A          172 IDLVI------------------------------------DGVPVQIGQPDGTVIRPH---------------LGVNGI  200 (343)
T ss_dssp             CCCEE------------------------------------TTEECBEECTTSCEECCC---------------CCEEEE
T ss_pred             cceeE------------------------------------CCEEEEeccCCCceecee---------------ccccee
Confidence            00000                                    012233445556655443               236789


Q ss_pred             EECCCCCEEEEEeCCC-cEEEEeCC---CCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC
Q 010816          367 YFSPDGQWVASASFDK-SIKLWNGT---TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR  442 (500)
Q Consensus       367 ~~sp~g~~lasgs~Dg-~i~lwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  442 (500)
                      +|+|+|+.|+.+..++ .+..++..   .+..-. -+ ....+..                  .........++++++|.
T Consensus       201 a~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~------------------~g~~g~pdgia~d~~G~  260 (343)
T 2qe8_A          201 VLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD-AE-LGSKIER------------------YSEKPICDGISIDKDHN  260 (343)
T ss_dssp             EECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCH-HH-HHTTCEE------------------EEECCSCSCEEECTTCC
T ss_pred             EeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCCh-hh-hhcceEe------------------cccCCCCceEEECCCCC
Confidence            9999999888887766 44444321   110000 00 0000000                  00000112246789999


Q ss_pred             EEEEEECCCcEEEEECCCccccccccC-cccCEEEEEEcCCCCEEEEEeCCCcE
Q 010816          443 LLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVL  495 (500)
Q Consensus       443 ~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~dg~~l~s~~~D~~v  495 (500)
                      ++++...++.|.+||.++++....... +.....+++|.++|+.+++.+..+++
T Consensus       261 l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          261 IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence            999988899999999855554322221 24568899999999888887755443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.14  E-value=2.2e-09  Score=100.22  Aligned_cols=296  Identities=14%  Similarity=0.097  Sum_probs=175.0

Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcc
Q 010816          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK  193 (500)
Q Consensus       114 ~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  193 (500)
                      ..+..++. |..++.++.+..|| .+++.+.....+...+.++...++|. |..++.+  |..+|. +++.... .....
T Consensus        25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~-~~~~~   97 (330)
T 3hxj_A           25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWR-FDTKK   97 (330)
T ss_dssp             CEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGG-SCC--
T ss_pred             ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEE-EECCC
Confidence            34445554 55666788899999 77776554444444567777776764 5555544  888886 5543321 11111


Q ss_pred             cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCee
Q 010816          194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL  273 (500)
Q Consensus       194 ~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~  273 (500)
                      ........       ....+..++.++.+..+|.. ++.......+...+.++...+++.++.++.++.|..+|.. ++.
T Consensus        98 ~~~~~~~~-------~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~  168 (330)
T 3hxj_A           98 AIVSDFTI-------FEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTE  168 (330)
T ss_dssp             ---CCEEE-------ETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCE
T ss_pred             CcccCceE-------ECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCE
Confidence            11111111       13467788889999999988 7666555544444555666778889999999999999988 776


Q ss_pred             EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCc
Q 010816          274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK  353 (500)
Q Consensus       274 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~  353 (500)
                      ...+......+.++....                                     ...+..++  +.+..+| .... ..
T Consensus       169 ~~~~~~~~~~~~~~~~d~-------------------------------------~g~l~v~t--~~l~~~d-~~g~-~~  207 (330)
T 3hxj_A          169 KWRFKTNDAITSAASIGK-------------------------------------DGTIYFGS--DKVYAIN-PDGT-EK  207 (330)
T ss_dssp             EEEEECSSCCCSCCEECT-------------------------------------TCCEEEES--SSEEEEC-TTSC-EE
T ss_pred             eEEEecCCCceeeeEEcC-------------------------------------CCEEEEEe--CEEEEEC-CCCc-EE
Confidence            655543322222222211                                     12344455  7788888 3222 12


Q ss_pred             eeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccce
Q 010816          354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS  433 (500)
Q Consensus       354 ~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (500)
                      .........+.++..+++|. |..++.++.|..+|. +++.+..+.......                           .
T Consensus       208 ~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~---------------------------~  258 (330)
T 3hxj_A          208 WNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIE---------------------------S  258 (330)
T ss_dssp             EEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCC---------------------------S
T ss_pred             EEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCcc---------------------------c
Confidence            22222335577788888876 445667888888874 555444333211100                           0


Q ss_pred             eeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          434 LYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       434 ~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      .....+++ .|..++.++.+..+|. +++...........+.++...++|+ |..++.+|.+++.
T Consensus       259 ~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~  320 (330)
T 3hxj_A          259 SPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL  320 (330)
T ss_dssp             CCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred             cceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence            01223344 5667788888999996 5555444433344556667777775 6678889988864

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.14  E-value=1.1e-08  Score=105.75  Aligned_cols=241  Identities=15%  Similarity=0.149  Sum_probs=141.1

Q ss_pred             CCCCCEEEEEEcCCCCEEEE-----EeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC--
Q 010816          148 GHKNWVLCIAWSADGKHLVS-----GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--  220 (500)
Q Consensus       148 ~h~~~v~~v~~s~~~~~l~s-----~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg--  220 (500)
                      +|...+..++|||||++||-     |+.+..|++||+.+|+.....+..  ....++.|.      +++.|+.++.+.  
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws------Dg~~l~y~~~~~~~  197 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL------GNEGFFYSSYDKPD  197 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE------TTTEEEEEESSCCC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe------CCCEEEEEEecCcc
Confidence            45667889999999998883     333467999999998753321111  112345564      345677777664  


Q ss_pred             -----------cEEEEECCCCe----EEEEecC-ccccEEEEEeCCCCe--EEEEe---CCCeEEEEeCCCCe-eEEEee
Q 010816          221 -----------DARIWDVSLRK----CVICLSG-HTLAVTCVKWGGDGV--IYTGS---QDCTIKVWETTQGK-LIRELK  278 (500)
Q Consensus       221 -----------~v~iwd~~~~~----~~~~~~~-h~~~v~~~~~~~~~~--l~t~~---~dg~i~lwd~~~~~-~~~~~~  278 (500)
                                 .|++|++.+..    ++..... |...+..+.|++|+.  +++.+   .++.|.++|+.++. ....+.
T Consensus       198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~  277 (693)
T 3iuj_A          198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ  277 (693)
T ss_dssp             -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred             cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence                       39999997754    3443334 455577889999984  33333   23589999987663 233333


Q ss_pred             cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC---CCeEEEEcCCCCCC-Cce
Q 010816          279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVSKQ-PKT  354 (500)
Q Consensus       279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~---d~~v~~wd~~~~~~-~~~  354 (500)
                      .+....... ++++                                   ....++.+..   .+.|..+|+..... ...
T Consensus       278 ~~~~~~~~~-~~~~-----------------------------------g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~  321 (693)
T 3iuj_A          278 GDLDADVSL-VDNK-----------------------------------GSTLYLLTNRDAPNRRLVTVDAANPGPAHWR  321 (693)
T ss_dssp             CSSSSCEEE-EEEE-----------------------------------TTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred             CCCCceEEE-Eecc-----------------------------------CCEEEEEECCCCCCCEEEEEeCCCCCccccE
Confidence            333222221 1111                                   0122333333   36788888765432 123


Q ss_pred             eeecccCcEEEEEECCCCCEEEEEeCCC---cEEEEeCCCCceEEEEeC-CcccEEEEEeeeeeeecCCCCceeeeeccc
Q 010816          355 RMTGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRG-HVGPVYQIRFELIYCFRYPSNFYCVVDMSC  430 (500)
Q Consensus       355 ~~~~h~~~v~~l~~sp~g~~lasgs~Dg---~i~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  430 (500)
                      .+..|...+.  .|++++++|+....++   .|++||+..+.. ..+.. ..+.+                         
T Consensus       322 ~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~-------------------------  373 (693)
T 3iuj_A          322 DLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALPGLGSV-------------------------  373 (693)
T ss_dssp             EEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCSSSSEE-------------------------
T ss_pred             EEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecCCCceE-------------------------
Confidence            4556666555  8999998887666544   689999875432 22221 11111                         


Q ss_pred             cceeeEEcCCCCEEEEEECC----CcEEEEECCCcc
Q 010816          431 CMSLYSWSADSRLLLSGSKD----STLKVWDIRTQK  462 (500)
Q Consensus       431 ~~~~~~~s~~~~~l~s~s~d----~~v~iwd~~~~~  462 (500)
                        ..+++++++..++....+    ++++.||+.+++
T Consensus       374 --~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          374 --SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             --EECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             --EeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence              112446777766555444    789999987765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.11  E-value=1.8e-08  Score=95.96  Aligned_cols=262  Identities=12%  Similarity=0.053  Sum_probs=158.4

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEE
Q 010816          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG  198 (500)
Q Consensus       119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~  198 (500)
                      ++..++.++.++.+..+|..+++.+...............  .+..++.++.++.|..+|..+|+........  ..+..
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~--~~~~~  177 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD--MPSLS  177 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC--C----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC--CCcee
Confidence            4567888889999999999999887665433221111112  2457888889999999999998754321111  00000


Q ss_pred             E--EeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcccc----------EEEEEeCCCCeEEEEeCCCeEEEE
Q 010816          199 I--SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA----------VTCVKWGGDGVIYTGSQDCTIKVW  266 (500)
Q Consensus       199 ~--~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~----------v~~~~~~~~~~l~t~~~dg~i~lw  266 (500)
                      .  .-.|..   ....++.++.++.+..+|..+++.+.........          +.......++.++.++.++.+..+
T Consensus       178 ~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~  254 (376)
T 3q7m_A          178 LRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL  254 (376)
T ss_dssp             -CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred             ecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence            0  001111   1246778888999999999999877655422100          000001125678888999999999


Q ss_pred             eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816          267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (500)
Q Consensus       267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~  346 (500)
                      |..+|+.+.......  ...+...                                      ...+..++.++.+..+|.
T Consensus       255 d~~tG~~~w~~~~~~--~~~~~~~--------------------------------------~~~l~~~~~~g~l~~~d~  294 (376)
T 3q7m_A          255 DLRSGQIMWKRELGS--VNDFIVD--------------------------------------GNRIYLVDQNDRVMALTI  294 (376)
T ss_dssp             ETTTCCEEEEECCCC--EEEEEEE--------------------------------------TTEEEEEETTCCEEEEET
T ss_pred             ECCCCcEEeeccCCC--CCCceEE--------------------------------------CCEEEEEcCCCeEEEEEC
Confidence            999998776554221  1111111                                      246777888889999987


Q ss_pred             CCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816          347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (500)
Q Consensus       347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  426 (500)
                      ...+............+.....  .+..|..++.+|.|.++|..+|+.+..++.....+...                  
T Consensus       295 ~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~------------------  354 (376)
T 3q7m_A          295 DGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTE------------------  354 (376)
T ss_dssp             TTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSC------------------
T ss_pred             CCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeC------------------
Confidence            6544322111011111111222  25678888999999999999999876655422221100                  


Q ss_pred             eccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816          427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWD  457 (500)
Q Consensus       427 ~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd  457 (500)
                              ..  ..+..|+.++.+|.++.|+
T Consensus       355 --------~~--~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          355 --------PV--AADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             --------CE--EETTEEEEEBTTSCEEEEE
T ss_pred             --------CE--EECCEEEEEeCCCEEEEEe
Confidence                    01  1355778889999999886

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.08  E-value=1.1e-08  Score=95.97  Aligned_cols=231  Identities=16%  Similarity=0.145  Sum_probs=136.5

Q ss_pred             ccEEEEEEcCCCCeEEEEe--CCCcEEEEeCCCCceeEEe-------cCCCCCEEEEEEcCCCCEEEEEeC-----CCeE
Q 010816          109 EAVLSVAFSPDGRQLASGS--GDTTVRLWDLNTQTPMFKC-------TGHKNWVLCIAWSADGKHLVSGSK-----AGEL  174 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~--~d~~i~iwd~~~~~~~~~~-------~~h~~~v~~v~~s~~~~~l~s~~~-----d~~i  174 (500)
                      .....++++|+|+.+++..  .++.++||.+.+++ +..+       .+|-..+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5678999999999988864  23436666665433 2221       134568999999999876665443     5799


Q ss_pred             EEEeCCCCCccccc-c----cCcccceEEEEeeeeecCCCCceEEEEe---CCCcEEEEECCCCeEEEEecCccccEE-E
Q 010816          175 QCWDPQTGKPSGNP-L----SGHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVSLRKCVICLSGHTLAVT-C  245 (500)
Q Consensus       175 ~~wd~~~~~~~~~~-~----~~~~~~v~~~~~~~~~~~~~~~~~~s~s---~dg~v~iwd~~~~~~~~~~~~h~~~v~-~  245 (500)
                      .+||+.+++..... +    ..+......+.+.+.    ....+++.+   .++.|.+||+.+++....+.+|..... .
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~----~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI----HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT----TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecC----CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence            99999888643211 1    112233456666531    223456655   678999999998887776655422110 0


Q ss_pred             EEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816          246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (500)
Q Consensus       246 ~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (500)
                      ..+..++ .+.+.+.|+.++.|..              .+..++++++.                               
T Consensus       172 ~~~~~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg-------------------------------  206 (343)
T 2qe8_A          172 IDLVIDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAEN-------------------------------  206 (343)
T ss_dssp             CCCEETTEECBEECTTSCEECCCC--------------CEEEEEECTTS-------------------------------
T ss_pred             cceeECCEEEEeccCCCceeceec--------------ccceeEeccCC-------------------------------
Confidence            1222234 3445566777666531              13456666542                               


Q ss_pred             cCCCCcEEEEeeCCC-eEEEEcCC---CCCCC------ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 010816          325 KGNAPERLVSGSDDF-TMFLWEPA---VSKQP------KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF  394 (500)
Q Consensus       325 ~~~~~~~~~s~s~d~-~v~~wd~~---~~~~~------~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~  394 (500)
                           ..++.+..++ .++.++..   .....      .....++......++++++|.++++...++.|.+||..+|+.
T Consensus       207 -----~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~  281 (343)
T 2qe8_A          207 -----EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY  281 (343)
T ss_dssp             -----CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred             -----CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence                 2344443333 44444321   00000      001123333456789999999999998999999999866654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.06  E-value=9e-08  Score=88.21  Aligned_cols=154  Identities=10%  Similarity=-0.018  Sum_probs=95.2

Q ss_pred             cccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816          108 TEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (500)
Q Consensus       108 ~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~  186 (500)
                      ........|+|+++ +++++..++.|..|+.. +. ...+..+...+..+.++++|+++++...++.|.+|+.. ++...
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~  120 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL  120 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE
Confidence            34566789999998 56677778999999984 33 33344456778999999999977766666889999985 54211


Q ss_pred             cc--ccCc-ccceEEEEeeeeecCCCCceEEE----EeC-------------CCcEEEEECCCCeEEEEecCccccEEEE
Q 010816          187 NP--LSGH-KKWITGISWEPVHLNAPCRRFVS----ASK-------------DGDARIWDVSLRKCVICLSGHTLAVTCV  246 (500)
Q Consensus       187 ~~--~~~~-~~~v~~~~~~~~~~~~~~~~~~s----~s~-------------dg~v~iwd~~~~~~~~~~~~h~~~v~~~  246 (500)
                      ..  ..+. ...+..+.+.|     ++..+++    |..             .+.|..+|..+++.....  .......+
T Consensus       121 ~~~~~~~~~~~~~~~i~~d~-----dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl  193 (305)
T 3dr2_A          121 LVGRYAGKRLNSPNDLIVAR-----DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL  193 (305)
T ss_dssp             EECEETTEECSCCCCEEECT-----TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred             EEeccCCCccCCCCCEEECC-----CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence            00  0110 01233454443     4445554    332             245667776555543322  33345678


Q ss_pred             EeCCCCe-EEEEeCC------CeEEEEeCCCC
Q 010816          247 KWGGDGV-IYTGSQD------CTIKVWETTQG  271 (500)
Q Consensus       247 ~~~~~~~-l~t~~~d------g~i~lwd~~~~  271 (500)
                      +|++++. |+.+...      +.|.+||+..+
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence            8998874 6666554      67888876543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.05  E-value=1.9e-10  Score=109.23  Aligned_cols=146  Identities=12%  Similarity=0.091  Sum_probs=79.2

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcc-cceE
Q 010816          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-KWIT  197 (500)
Q Consensus       119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~~v~  197 (500)
                      ++..+++++.|+.|..||..+++.+..+..  +.+.+..+..++..+++++.|+.|..||.++|+..... ..+. ..+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~-~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL-PFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC-SCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee-eccCccccc
Confidence            577899999999999999999999887765  45555556677878888899999999999888754221 1111 1110


Q ss_pred             EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeC-CCCeEEEEeCCCeEEEEeCCCCeeEEE
Q 010816          198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLIRE  276 (500)
Q Consensus       198 ~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~t~~~dg~i~lwd~~~~~~~~~  276 (500)
                         -.|..  .....+++++.|+.++.||..+++.+..+..+..    ..++ .++.+++++.|+.|+.||..+|+.+..
T Consensus        85 ---~sp~~--~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           85 ---ASPCR--SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             ---TCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             ---cCceE--ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence               01110  0224566777888888888888887766554431    1122 245677788888888888887765543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.04  E-value=6.7e-08  Score=89.07  Aligned_cols=231  Identities=16%  Similarity=0.148  Sum_probs=137.5

Q ss_pred             ccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC-CCeEEEEeCCCC
Q 010816          193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ-DCTIKVWETTQG  271 (500)
Q Consensus       193 ~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~-dg~i~lwd~~~~  271 (500)
                      .....+..|.|..    ...+++...++.|..|+.. +. ...+..+...+..+.++++|.++++.. ++.|.+||.. +
T Consensus        44 ~~~~egp~~~~~g----~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           44 ATWSEGPAWWEAQ----RTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             CSSEEEEEEEGGG----TEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CcCccCCeEeCCC----CEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            3455677787632    1256777788999999984 43 233444556688899999998877765 4789999975 5


Q ss_pred             eeEEEeec-CC---ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE----ee-------
Q 010816          272 KLIRELKG-HG---HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS----GS-------  336 (500)
Q Consensus       272 ~~~~~~~~-~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~s-------  336 (500)
                      +....... ..   ..+..+++.++..                                    ..++    |.       
T Consensus       117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~------------------------------------l~~td~~~g~~~~~~~~  160 (305)
T 3dr2_A          117 QAHLLVGRYAGKRLNSPNDLIVARDGA------------------------------------IWFTDPPFGLRKPSQGC  160 (305)
T ss_dssp             CEEEEECEETTEECSCCCCEEECTTSC------------------------------------EEEECCSGGGSCGGGSC
T ss_pred             CEEEEEeccCCCccCCCCCEEECCCCC------------------------------------EEEeCcCCCcccccccc
Confidence            53222111 11   1233444444432                                    2222    11       


Q ss_pred             ------CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceEEEEeCCccc
Q 010816          337 ------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD------KSIKLWNGTTGKFVAVFRGHVGP  404 (500)
Q Consensus       337 ------~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D------g~i~lwd~~~~~~~~~~~~h~~~  404 (500)
                            ..+.|+.+|......  ..+. .....+.++|+|||+.|+.+...      +.|++|++..+. +...+     
T Consensus       161 ~~~~~~~~~~v~~~d~~~g~~--~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~-----  231 (305)
T 3dr2_A          161 PADPELAHHSVYRLPPDGSPL--QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRR-----  231 (305)
T ss_dssp             CCCCSSSCEEEEEECSSSCCC--EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEE-----
T ss_pred             ccccccCCCeEEEEcCCCCcE--EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCe-----
Confidence                  124577777543322  2222 34567889999999988777665      689999886554 11100     


Q ss_pred             EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCC
Q 010816          405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE  484 (500)
Q Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~  484 (500)
                         + +.     ...         ......+++.++|++.++. .+ .|.+|+.. ++.+..+..+. .+..++|+|+++
T Consensus       232 ---~-~~-----~~~---------~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~-g~~~~~~~~~~-~~~~~~f~~d~~  289 (305)
T 3dr2_A          232 ---H-FA-----SVP---------DGLPDGFCVDRGGWLWSSS-GT-GVCVFDSD-GQLLGHIPTPG-TASNCTFDQAQQ  289 (305)
T ss_dssp             ---E-EE-----CCS---------SSCCCSEEECTTSCEEECC-SS-EEEEECTT-SCEEEEEECSS-CCCEEEECTTSC
T ss_pred             ---E-EE-----ECC---------CCCCCeEEECCCCCEEEec-CC-cEEEECCC-CCEEEEEECCC-ceeEEEEeCCCC
Confidence               0 00     000         0011123568889855444 44 49999984 55555554443 578999999999


Q ss_pred             EEEEEeCCCcEEE
Q 010816          485 KVASGGKDRVLKL  497 (500)
Q Consensus       485 ~l~s~~~D~~v~i  497 (500)
                      .|..++.++..++
T Consensus       290 ~L~it~~~~l~~~  302 (305)
T 3dr2_A          290 RLFITGGPCLWML  302 (305)
T ss_dssp             EEEEEETTEEEEE
T ss_pred             EEEEEcCCeEEEE
Confidence            9998888776555

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.04  E-value=1.1e-10  Score=110.77  Aligned_cols=204  Identities=11%  Similarity=0.025  Sum_probs=110.7

Q ss_pred             CCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEE
Q 010816          209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL  287 (500)
Q Consensus       209 ~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~  287 (500)
                      ...++++++.|+.|+.||..+++.+..+..  ..+.+..+..++ .+++++.|+.|+.||..+|+.+.....+.....  
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~--   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV--   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc--
Confidence            346788999999999999999998877765  333333333455 566678999999999988876654432210000  


Q ss_pred             EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEE
Q 010816          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY  367 (500)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~  367 (500)
                      ..+|                                .. .....+++++.|+.++.||....+.... +..+.    ...
T Consensus        84 ~~sp--------------------------------~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~-~~~~~----~~~  125 (369)
T 2hz6_A           84 QASP--------------------------------CR-SSDGILYMGKKQDIWYVIDLLTGEKQQT-LSSAF----ADS  125 (369)
T ss_dssp             TTCS--------------------------------CC------CCCCEEEEEEEEECCC--------------------
T ss_pred             ccCc--------------------------------eE-ecCCEEEEEeCCCEEEEEECCCCcEEEE-ecCCC----ccc
Confidence            0000                                00 0123567788899999999876544322 22221    235


Q ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC---CEE
Q 010816          368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS---RLL  444 (500)
Q Consensus       368 ~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l  444 (500)
                      ++|++..+++++.|+.|+.||..+|+.+..+..+.     .        .                ..+++++.   ..+
T Consensus       126 ~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-----~--------~----------------~~~~~~~~~~~~~v  176 (369)
T 2hz6_A          126 LSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-----Y--------A----------------ASLPEDDVDYKMSH  176 (369)
T ss_dssp             -------EEEEEEEEEEECCCSSSSSCCCEEEEEE-----E--------C----------------CBCCCCCTTCCCCE
T ss_pred             ccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-----c--------c----------------CccccCCccccceE
Confidence            67788899999999999999999998654433110     0        0                00112221   456


Q ss_pred             EEEECCCcEEEEECCCccccccccCcccCEE-EEEEcCCCC
Q 010816          445 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVF-AVDWSPDGE  484 (500)
Q Consensus       445 ~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~-~l~~s~dg~  484 (500)
                      ++++.||.|+.||.++++.+-...- ...+. ...++++|.
T Consensus       177 ~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          177 FVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL  216 (369)
T ss_dssp             EEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred             EEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence            7789999999999999887655442 23443 345566664

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.04  E-value=3.1e-07  Score=85.41  Aligned_cols=220  Identities=12%  Similarity=0.038  Sum_probs=129.2

Q ss_pred             EEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc-
Q 010816          111 VLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-  188 (500)
Q Consensus       111 V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-  188 (500)
                      ..+..|+|++. ++++...++.|..||..++... .+. ....+.++.|+++|+++++. . ..|.+||..+++..... 
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEee
Confidence            34678999855 5556667889999999876543 222 34679999999999877764 3 45999999877642111 


Q ss_pred             cc-C-cccceEEEEeeeeecCCCCceEEEEeC------CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EE-EEe
Q 010816          189 LS-G-HKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGS  258 (500)
Q Consensus       189 ~~-~-~~~~v~~~~~~~~~~~~~~~~~~s~s~------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-t~~  258 (500)
                      .. + ....+..+.+.|     +++.+++...      .+.|..++  .++... +..+......++|++++. ++ +.+
T Consensus       127 ~~~~~~~~~~~~i~~d~-----~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~  198 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHP-----SGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDT  198 (326)
T ss_dssp             SSTTCTTEEEEEEEECT-----TSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEET
T ss_pred             CCCCCCCCCCCCEEECC-----CCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEEC
Confidence            10 1 123456666654     3344444332      24455555  444332 222233456789999883 44 445


Q ss_pred             CCCeEEEEeCC--CC-ee-----EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816          259 QDCTIKVWETT--QG-KL-----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (500)
Q Consensus       259 ~dg~i~lwd~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (500)
                      .++.|.+||+.  +| ..     ...+.........+++.++                                    +.
T Consensus       199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~------------------------------------G~  242 (326)
T 2ghs_A          199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE------------------------------------GH  242 (326)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT------------------------------------SC
T ss_pred             CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC------------------------------------CC
Confidence            67899999985  55 32     1111111222233333222                                    23


Q ss_pred             EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEEC-CCCCEEEEEeC
Q 010816          331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS-PDGQWVASASF  380 (500)
Q Consensus       331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~s-p~g~~lasgs~  380 (500)
                      ..++...++.|..||+.  ......+..+...+.+++|+ |+++.|..++.
T Consensus       243 lwva~~~~~~v~~~d~~--g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          243 IWNARWGEGAVDRYDTD--GNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEEETTTEEEEECTT--CCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEEEEeCCCEEEEECCC--CCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            45555566889999873  22334444555679999998 88876655544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.04  E-value=4.2e-08  Score=93.57  Aligned_cols=274  Identities=12%  Similarity=-0.000  Sum_probs=163.5

Q ss_pred             CCCCEEEEEeC-C----CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEe----------CCCcEEE
Q 010816          160 ADGKHLVSGSK-A----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----------KDGDARI  224 (500)
Q Consensus       160 ~~~~~l~s~~~-d----~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s----------~dg~v~i  224 (500)
                      ++++.++.+.. +    +.|.+.|..+++.......+. .+  .+.++|     +++++..+.          .++.|.+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~Sp-----Dgk~lyVan~~~~~~~~G~~~~~Vsv  153 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAE-----DGSFFAQASTVFERIARGKRTDYVEV  153 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECT-----TSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECC-----CCCEEEEEeccccccccCCCCCEEEE
Confidence            45666655443 2    699999999887654433222 22  566655     445555554          4678999


Q ss_pred             EECCCCeEEEEec-C-c-----cccEEEEEeCCCC-eEEEEeC--CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcce
Q 010816          225 WDVSLRKCVICLS-G-H-----TLAVTCVKWGGDG-VIYTGSQ--DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA  294 (500)
Q Consensus       225 wd~~~~~~~~~~~-~-h-----~~~v~~~~~~~~~-~l~t~~~--dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  294 (500)
                      +|..+.+.+..+. + .     ...-..+.+++|+ .++.+..  ++.|.+.|+.+++.+..+.....    ....+.  
T Consensus       154 iD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~--  227 (426)
T 3c75_H          154 FDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPA--  227 (426)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEE--
T ss_pred             EECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccC--
Confidence            9999988776553 1 0     0112245788887 4666553  68899999999998887754321    111111  


Q ss_pred             eeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee----ee-cccCcEEEEEEC
Q 010816          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR----MT-GHQQLVNHVYFS  369 (500)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~----~~-~h~~~v~~l~~s  369 (500)
                                                       ....+++.+.||.+.+.+.... .....    +. +.......+.|+
T Consensus       228 ---------------------------------g~~~~v~~~~dG~~~~V~~~~~-~v~~~~~~~~~v~~~p~~~~~~~~  273 (426)
T 3c75_H          228 ---------------------------------SPTVFYMNCRDGSLARVDFADG-ETKVTNTEVFHTEDELLINHPAFS  273 (426)
T ss_dssp             ---------------------------------ETTEEEEEETTSSEEEEECCTT-CCEEEECCCCSCTTSCBCSCCEEC
T ss_pred             ---------------------------------CCcEEEEEcCCCCEEEEECCCC-cEEEEeeeeeccCCCceeeEeeec
Confidence                                             0124555666777766665221 11100    00 001111235689


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceEE--EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE
Q 010816          370 PDGQWVASASFDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG  447 (500)
Q Consensus       370 p~g~~lasgs~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~  447 (500)
                      +++..++..+..+.|.+.|...+....  .+.--.                 ...............++++|+++.++.+
T Consensus       274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~-----------------~~~i~~g~~p~g~~~va~s~dg~rlyVa  336 (426)
T 3c75_H          274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALT-----------------EAERADDWRPGGWQQTAYHRQSDRIYLL  336 (426)
T ss_dssp             TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSC-----------------TTTGGGTEEECSSSCEEEEGGGTEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecc-----------------ccccccccccCCceeeEEcCCCCEEEEE
Confidence            998887777888999999986544221  110000                 0000000000011113678998877766


Q ss_pred             EC----------CCcEEEEECCCccccccccCcccCEEEEEEcCCCC-EEEEEe-CCCcEEEec
Q 010816          448 SK----------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGG-KDRVLKLWM  499 (500)
Q Consensus       448 s~----------d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~s~~-~D~~v~iW~  499 (500)
                      ..          ++.|-++|+.+.+.+..++.. ...+++.|+|||+ +++++. .++.|.+++
T Consensus       337 ~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          337 VDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             ecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence            42          357999999999998887643 2478999999999 888887 589998876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.03  E-value=1.7e-08  Score=94.69  Aligned_cols=268  Identities=10%  Similarity=-0.005  Sum_probs=155.8

Q ss_pred             cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCCcccccccC-cc-----c
Q 010816          131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTGKPSGNPLSG-HK-----K  194 (500)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~-~~-----~  194 (500)
                      +|.+.|..+.+.+..+..-..+  .+.++||+++++.+.          .++.|.+||+.+++.......+ ..     .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999988877654556  799999999998876          4789999999998765432111 00     1


Q ss_pred             ceEEEEeeeeecCCCCceEEEEeC--CCcEEE--EECCCCeEEEEec-CccccEEEEEeCCCCeEEEEeCCCeEEEEeCC
Q 010816          195 WITGISWEPVHLNAPCRRFVSASK--DGDARI--WDVSLRKCVICLS-GHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT  269 (500)
Q Consensus       195 ~v~~~~~~~~~~~~~~~~~~s~s~--dg~v~i--wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~  269 (500)
                      .-..+.++     +++++++.+..  +..+.+  +|..+   +..+. +..   ..+.......+++.+.||.+.+.|+.
T Consensus       125 ~P~~ia~S-----pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~  193 (368)
T 1mda_H          125 RVHIIGNC-----ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             CTTSEEEC-----TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             CcceEEEc-----CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence            11234443     35667776654  456888  88866   22221 110   00111222345566778888888877


Q ss_pred             C-----CeeEEE----eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          270 Q-----GKLIRE----LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       270 ~-----~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      +     ++....    +.....+.   . .                                    .....++..+. +.
T Consensus       194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~------------------------------------~~~~~~~~vs~-~~  232 (368)
T 1mda_H          194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-A------------------------------------NYPGMLVWAVA-SS  232 (368)
T ss_dssp             SSCCCCEECCCCSCTTSCBCSCCE---E-E------------------------------------TTTTEEEECBS-SC
T ss_pred             cccccCCeEEEEeeeeeeCCCCcc---c-c------------------------------------ccCCEEEEEcC-CE
Confidence            5     332210    00000000   0 0                                    01223444444 77


Q ss_pred             EEEEcCCCCCCC-ceeee-------cc---cCcEEEEEECCCCCEEEEEeC---------CCcEEEEeCCCCceEEEEeC
Q 010816          341 MFLWEPAVSKQP-KTRMT-------GH---QQLVNHVYFSPDGQWVASASF---------DKSIKLWNGTTGKFVAVFRG  400 (500)
Q Consensus       341 v~~wd~~~~~~~-~~~~~-------~h---~~~v~~l~~sp~g~~lasgs~---------Dg~i~lwd~~~~~~~~~~~~  400 (500)
                      +.+.|....... ...+.       .+   ......++++||++.+..+..         ++.+.++|+.+++.+..+..
T Consensus       233 V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v  312 (368)
T 1mda_H          233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN  312 (368)
T ss_dssp             CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred             EEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC
Confidence            877776432110 00000       00   011112689999987776533         23566999999988776543


Q ss_pred             CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEEECCCccccccccCcccCEEEEE
Q 010816          401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVD  478 (500)
Q Consensus       401 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~  478 (500)
                      ... ..                           .++++|||+ ++++.. .++.|.++|+.+++.++.++.... -+.++
T Consensus       313 g~~-p~---------------------------gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~  363 (368)
T 1mda_H          313 GHD-SD---------------------------AIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLS  363 (368)
T ss_dssp             EEE-EC---------------------------EEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEE
T ss_pred             CCC-cc---------------------------eEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEE
Confidence            221 11                           226799997 556666 599999999999999888875543 34555


Q ss_pred             EcC
Q 010816          479 WSP  481 (500)
Q Consensus       479 ~s~  481 (500)
                      +.+
T Consensus       364 ~~~  366 (368)
T 1mda_H          364 VQN  366 (368)
T ss_dssp             CCC
T ss_pred             eec
Confidence            543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.03  E-value=2.2e-08  Score=102.68  Aligned_cols=323  Identities=14%  Similarity=0.069  Sum_probs=165.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCcccccccCcc-c--------ce-EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe
Q 010816          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-K--------WI-TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK  231 (500)
Q Consensus       162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~--------~v-~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~  231 (500)
                      +..|+.++.++.|..+|..+|+.+-....... .        .+ .++.       ....+++.++.|+.+..+|..+++
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a-------~~~~~v~v~~~dg~l~alD~~tG~  149 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVA-------LWKGKVYVGAWDGRLIALDAATGK  149 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCE-------EETTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCce-------EECCEEEEEcCCCEEEEEECCCCC
Confidence            45677777788899999988875432111000 0        00 0111       123578888999999999999999


Q ss_pred             EEEEecCc-c----ccEEEEEeCCCCeEEEEeC------CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccc
Q 010816          232 CVICLSGH-T----LAVTCVKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (500)
Q Consensus       232 ~~~~~~~h-~----~~v~~~~~~~~~~l~t~~~------dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (500)
                      .+..+..+ .    ..+.+.....++.++.++.      ++.|+.+|..+|+.+..+.............+.  ...+. 
T Consensus       150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~--~~~g~-  226 (677)
T 1kb0_A          150 EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES--MKRAA-  226 (677)
T ss_dssp             EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH--HHHHH-
T ss_pred             EEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc--ccccc-
Confidence            88776644 1    1121111112456666654      799999999999988776532211000000000  00000 


Q ss_pred             cCCCCCCCCHHHHHHHHHH--hhhhh-cCCCCcEEEEeeCCC-------------------eEEEEcCCCCCCCceee-e
Q 010816          301 DHTGKQYSSPEEMKKAALE--RYNKI-KGNAPERLVSGSDDF-------------------TMFLWEPAVSKQPKTRM-T  357 (500)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~s~s~d~-------------------~v~~wd~~~~~~~~~~~-~  357 (500)
                          ..+..........-.  .+..+ .......++.++.++                   .|..+|....+...... .
T Consensus       227 ----~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~  302 (677)
T 1kb0_A          227 ----RTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET  302 (677)
T ss_dssp             ----TTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred             ----ccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC
Confidence                000000000000000  00000 001123444444332                   47777776554332221 1


Q ss_pred             ccc-------CcEEEEEECCCC---CEEEEEeCCCcEEEEeCCCCceEEEEeCCccc-EEEEEe--eeee--eecCCCCc
Q 010816          358 GHQ-------QLVNHVYFSPDG---QWVASASFDKSIKLWNGTTGKFVAVFRGHVGP-VYQIRF--ELIY--CFRYPSNF  422 (500)
Q Consensus       358 ~h~-------~~v~~l~~sp~g---~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~-v~~~~~--~~~~--~~~~~~~~  422 (500)
                      .|.       ....-+....+|   ..++.++.+|.++++|..+|+.+..++....+ ...+..  ..+.  ..++....
T Consensus       303 ~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~  382 (677)
T 1kb0_A          303 PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKP  382 (677)
T ss_dssp             TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSC
T ss_pred             CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCc
Confidence            221       112223333477   68999999999999999999998766532211 111100  0000  00000000


Q ss_pred             eeeeec---cccceeeEEcCCCCEEEEEECC-------------------------------------------CcEEEE
Q 010816          423 YCVVDM---SCCMSLYSWSADSRLLLSGSKD-------------------------------------------STLKVW  456 (500)
Q Consensus       423 ~~~~~~---~~~~~~~~~s~~~~~l~s~s~d-------------------------------------------~~v~iw  456 (500)
                      ......   ...-...+++|++.++++...+                                           +.|..|
T Consensus       383 ~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~  462 (677)
T 1kb0_A          383 QDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAW  462 (677)
T ss_dssp             EECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEE
T ss_pred             cEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEE
Confidence            000000   0000134678888888776432                                           779999


Q ss_pred             ECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          457 DIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       457 d~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |+.+++.+-..+ +...+++..+..++..++.++.|+.+++|+
T Consensus       463 D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          463 DPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             ETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             eCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence            999998765554 223344455667788999999999999987

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.96  E-value=4.2e-06  Score=87.96  Aligned_cols=311  Identities=10%  Similarity=0.089  Sum_probs=184.1

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCC-CCC-EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH-KNW-VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h-~~~-v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      |.++...++|.+.+.. . +.+..||..++.......++ ... |.++...+++.+.+ ++.++.|..||..+++.....
T Consensus       133 i~~i~~d~~g~lwi~t-~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~  209 (795)
T 4a2l_A          133 VNGIEEISPEQLLIST-P-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVI  209 (795)
T ss_dssp             CCEEEEEETTEEEEEE-T-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC
T ss_pred             EEEEEECCCCCEEEEE-C-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEec
Confidence            8888888888766544 3 45888997665321110111 123 88888877776554 566556888998776532211


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC-------ccccEEEEEeCCCCeEEEEeCCC
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-------HTLAVTCVKWGGDGVIYTGSQDC  261 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~l~t~~~dg  261 (500)
                      .......|.++...+      ...+..|+.++-+..||..+++.......       ....|.++....++.|..|+.+ 
T Consensus       210 ~~~~~~~i~~i~~d~------~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-  282 (795)
T 4a2l_A          210 PILGTKQIQAILQQS------PTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-  282 (795)
T ss_dssp             ----CCCEEEEEEEE------TTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-
T ss_pred             CCCCCCeeEEEEEcC------CCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-
Confidence            111233455554332      13455566555688999887665433222       1356999999989999988876 


Q ss_pred             eEEEEeCCCCeeEEEeec-------CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816          262 TIKVWETTQGKLIRELKG-------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (500)
Q Consensus       262 ~i~lwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (500)
                      -|.+||..+++.......       ....|.++...++                                     ..+..
T Consensus       283 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-------------------------------------g~lWi  325 (795)
T 4a2l_A          283 DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ-------------------------------------GGMWL  325 (795)
T ss_dssp             CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT-------------------------------------SCEEE
T ss_pred             hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC-------------------------------------cCEEE
Confidence            688899877654432211       1233555443322                                     24667


Q ss_pred             eeCCCeEEEEcCCCCCCCceee-----ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCC--------
Q 010816          335 GSDDFTMFLWEPAVSKQPKTRM-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH--------  401 (500)
Q Consensus       335 ~s~d~~v~~wd~~~~~~~~~~~-----~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h--------  401 (500)
                      |+.++-|..++.....-.....     .-....|.++...++|.+- .|+.++-|..||..+++........        
T Consensus       326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~  404 (795)
T 4a2l_A          326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIG  404 (795)
T ss_dssp             EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred             EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence            7777778888754321100000     0123569999999988744 5777878999998877653321110        


Q ss_pred             cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccccc----CcccCEEEE
Q 010816          402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP----GHADEVFAV  477 (500)
Q Consensus       402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~h~~~V~~l  477 (500)
                      ...|.++                           ...++|++|..|..++-+.+||..+++......    .....|.++
T Consensus       405 ~~~v~~i---------------------------~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i  457 (795)
T 4a2l_A          405 SNNIKAV---------------------------YVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAI  457 (795)
T ss_dssp             CSCEEEE---------------------------EEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE
T ss_pred             CccEEEE---------------------------EEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE
Confidence            1222222                           335677756677887779999988765432211    134578999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEe
Q 010816          478 DWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       478 ~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      ...++|...+... +| |.+|
T Consensus       458 ~~d~~g~lwigt~-~G-l~~~  476 (795)
T 4a2l_A          458 LPDGEGNLWLGTL-SA-LVRF  476 (795)
T ss_dssp             EECSSSCEEEEES-SC-EEEE
T ss_pred             EECCCCCEEEEec-Cc-eeEE
Confidence            9888887555443 44 4444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.96  E-value=9.4e-06  Score=85.29  Aligned_cols=311  Identities=11%  Similarity=0.124  Sum_probs=184.9

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc
Q 010816          111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  189 (500)
                      |.++...+++.+.+ |..++.+..||..++..... ...+...|.++...+++.+.+ |+.++-+.+||..+++......
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~  252 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH  252 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence            88898888887655 55555688899876543221 112346788888877776554 4545458889987654321111


Q ss_pred             c------CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC-------ccccEEEEEeCCCCeEEE
Q 010816          190 S------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-------HTLAVTCVKWGGDGVIYT  256 (500)
Q Consensus       190 ~------~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~l~t  256 (500)
                      .      -....|.++...+      ...+-.|+.+ -+.+||..+++.......       ....|.++....+|.|..
T Consensus       253 ~~~~~~~l~~~~i~~i~~d~------~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi  325 (795)
T 4a2l_A          253 SPSNPKSISSNYIRSLAMDS------QNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL  325 (795)
T ss_dssp             CTTCTTSCSCSBEEEEEECT------TSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE
T ss_pred             CCCCccccCCCeEEEEEEcC------CCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE
Confidence            0      1123466654322      2345566665 588899887765443211       235699999999999999


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeec------CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816          257 GSQDCTIKVWETTQGKLIRELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE  330 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (500)
                      |+.++-|..|+..++........      ....|.++....                                     ..
T Consensus       326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-------------------------------------~g  368 (795)
T 4a2l_A          326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-------------------------------------DK  368 (795)
T ss_dssp             EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-------------------------------------TS
T ss_pred             EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-------------------------------------CC
Confidence            99999999998765543221110      122344444322                                     22


Q ss_pred             EEEEeeCCCeEEEEcCCCCCCCceeee-------cccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC---
Q 010816          331 RLVSGSDDFTMFLWEPAVSKQPKTRMT-------GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---  400 (500)
Q Consensus       331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~-------~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~---  400 (500)
                      .+..|+.++-+..|+............       -....|.++...++|++|..|+.++-|..||..+++.......   
T Consensus       369 ~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~  448 (795)
T 4a2l_A          369 NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ  448 (795)
T ss_dssp             CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC
T ss_pred             CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC
Confidence            466777777788888653321110000       1235699999999998666778878899999988765332110   


Q ss_pred             -CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccccc------CcccC
Q 010816          401 -HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP------GHADE  473 (500)
Q Consensus       401 -h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------~h~~~  473 (500)
                       ....|.++                           ...++|.+.+.. .+ -+.+||..+++......      -....
T Consensus       449 l~~~~v~~i---------------------------~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (795)
T 4a2l_A          449 LVNENVYAI---------------------------LPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQ  499 (795)
T ss_dssp             CSCSCEEEE---------------------------EECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCC
T ss_pred             cCCCeeEEE---------------------------EECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCce
Confidence             11223332                           235567655544 44 48889987765432211      12357


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          474 VFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       474 V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      |.++...++|+..+.+. .| |..|
T Consensus       500 i~~i~~d~~g~lWigt~-~G-l~~~  522 (795)
T 4a2l_A          500 ITTLFRDSHKRLWIGGE-EG-LSVF  522 (795)
T ss_dssp             EEEEEECTTCCEEEEES-SC-EEEE
T ss_pred             EEEEEECCCCCEEEEeC-Cc-eEEE
Confidence            89999998887655444 45 4444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.95  E-value=9.7e-08  Score=98.07  Aligned_cols=325  Identities=11%  Similarity=0.046  Sum_probs=164.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCcccccccCcccce---E---EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE
Q 010816          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI---T---GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC  235 (500)
Q Consensus       162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v---~---~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~  235 (500)
                      +..|+.++.++.|..+|..+|+.+-..........   .   .+.-.|.   ....+++.++.|+.+..+|..+++.+..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~v~v~~~dg~l~AlDa~TG~~~W~  146 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVA---VWKGKVYVGVLDGRLEAIDAKTGQRAWS  146 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCE---EETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccE---EECCEEEEEccCCEEEEEECCCCCEeee
Confidence            55777788889999999998875432111000000   0   0000010   1235788889999999999999998766


Q ss_pred             ecCc--c---ccEEEEEeCCCCeEEEEe------CCCeEEEEeCCCCeeEEEeecCC-ceEEEEEecCcceeeeccccCC
Q 010816          236 LSGH--T---LAVTCVKWGGDGVIYTGS------QDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHT  303 (500)
Q Consensus       236 ~~~h--~---~~v~~~~~~~~~~l~t~~------~dg~i~lwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~  303 (500)
                      +...  .   ..+.+.....++.++.++      .++.|+.||..+|+.+..+.... .+...  +... .+..+.....
T Consensus       147 ~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~--~~~~-~~~~~~~~~~  223 (689)
T 1yiq_A          147 VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLP--PEGK-GMEIAAKTWF  223 (689)
T ss_dssp             EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC--CCSH-HHHHHHTTCC
T ss_pred             ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccc--cccc-cccccccccC
Confidence            5432  1   111110000156666654      37899999999999887654211 00000  0000 0000000000


Q ss_pred             CCCCCCHHHHHHHH-H--Hhhhhh-cCCCCcEEEEeeCCC-------------------eEEEEcCCCCCCCceeee-cc
Q 010816          304 GKQYSSPEEMKKAA-L--ERYNKI-KGNAPERLVSGSDDF-------------------TMFLWEPAVSKQPKTRMT-GH  359 (500)
Q Consensus       304 ~~~~~~~~~~~~~~-~--~~~~~~-~~~~~~~~~s~s~d~-------------------~v~~wd~~~~~~~~~~~~-~h  359 (500)
                      +..       .... -  ..+... .......++.++.++                   .|..+|....+....... .|
T Consensus       224 g~~-------w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~  296 (689)
T 1yiq_A          224 GDA-------YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG  296 (689)
T ss_dssp             SST-------HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred             Cce-------eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc
Confidence            000       0000 0  000000 001124455555554                   378888766543322211 12


Q ss_pred             c-------CcEEEEEECCCCC---EEEEEeCCCcEEEEeCCCCceEEEEeCCc-ccEEEEEeee---ee--eec--CCCC
Q 010816          360 Q-------QLVNHVYFSPDGQ---WVASASFDKSIKLWNGTTGKFVAVFRGHV-GPVYQIRFEL---IY--CFR--YPSN  421 (500)
Q Consensus       360 ~-------~~v~~l~~sp~g~---~lasgs~Dg~i~lwd~~~~~~~~~~~~h~-~~v~~~~~~~---~~--~~~--~~~~  421 (500)
                      .       ..........+|+   .++.++.+|.++++|..+|+++...+-.. .....+....   +.  ..+  ++..
T Consensus       297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~  376 (689)
T 1yiq_A          297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG  376 (689)
T ss_dssp             CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred             ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence            1       1122222223565   78899999999999999999876544221 1111111000   00  000  0000


Q ss_pred             c-eeeeec---cccceeeEEcCCCCEEEEEEC---------------------------------------------CCc
Q 010816          422 F-YCVVDM---SCCMSLYSWSADSRLLLSGSK---------------------------------------------DST  452 (500)
Q Consensus       422 ~-~~~~~~---~~~~~~~~~s~~~~~l~s~s~---------------------------------------------d~~  452 (500)
                      . ......   ...-...+++|+..++++...                                             +|.
T Consensus       377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~  456 (689)
T 1yiq_A          377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK  456 (689)
T ss_dssp             SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred             CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence            0 000000   000112467888777776532                                             377


Q ss_pred             EEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          453 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       453 v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      ++.||+.+++.+-..+.+. .+..-.+...+..++.++.|+.++.|+.
T Consensus       457 l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~  503 (689)
T 1yiq_A          457 LIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA  503 (689)
T ss_dssp             EEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             EEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence            9999999998876655443 2333355667889999999999999973

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.94  E-value=1.2e-07  Score=97.19  Aligned_cols=314  Identities=13%  Similarity=0.112  Sum_probs=173.1

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC----------E-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP  188 (500)
Q Consensus       120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  188 (500)
                      +..|+.++.++.|.-+|..+++.+.........          + ..+.+  .+..|+.++.|+.|..+|..+|+..-..
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            556777788899999999999988776432210          0 11222  3567888899999999999999865322


Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeC------CCcEEEEECCCCeEEEEecCc---cc------------------
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGH---TL------------------  241 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~------dg~v~iwd~~~~~~~~~~~~h---~~------------------  241 (500)
                      ..........+.-.|.-   ...+++.+..      ++.|..+|..+++.+..+...   ..                  
T Consensus       144 ~~~~~~~~~~~~~~P~v---~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  220 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD  220 (668)
T ss_dssp             ECSCTTSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred             ccCCCCCcceecCCCEE---ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence            11110000011111211   1234555543      589999999999988766421   00                  


Q ss_pred             ----------cEEEEEeCC-CCeEEEEeCCC-------------------eEEEEeCCCCeeEEEeecCCceEEEEEecC
Q 010816          242 ----------AVTCVKWGG-DGVIYTGSQDC-------------------TIKVWETTQGKLIRELKGHGHWVNSLALST  291 (500)
Q Consensus       242 ----------~v~~~~~~~-~~~l~t~~~dg-------------------~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~  291 (500)
                                ....+++++ .+.++.++.++                   .|.-+|..+|+.+..++...+.........
T Consensus       221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~  300 (668)
T 1kv9_A          221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ  300 (668)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence                      001245554 35777777665                   489999999998877654211110000000


Q ss_pred             cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc----------c-
Q 010816          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH----------Q-  360 (500)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h----------~-  360 (500)
                      ...+....                        +.+.....++.++.+|.++++|....+.........          . 
T Consensus       301 ~~~~~d~~------------------------~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g  356 (668)
T 1kv9_A          301 QITLAELN------------------------IDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (668)
T ss_dssp             CEEEEEEE------------------------ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CcEEEEec------------------------cCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence            00000000                        000001247788889999999876544221000000          0 


Q ss_pred             Cc------------------------EEEEEECCCCCEEEEE------------------------------------eC
Q 010816          361 QL------------------------VNHVYFSPDGQWVASA------------------------------------SF  380 (500)
Q Consensus       361 ~~------------------------v~~l~~sp~g~~lasg------------------------------------s~  380 (500)
                      ..                        -..++++|+..++...                                    ..
T Consensus       357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~  436 (668)
T 1kv9_A          357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (668)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence            00                        0126777876655432                                    13


Q ss_pred             CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816          381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       381 Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                      +|.|+.||+.+|+.+-..+.+... .                           .......+.+++.++.|+.++.||.++
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~-~---------------------------~~~~~t~gg~vf~g~~dg~l~a~d~~t  488 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHW-N---------------------------GGTLSTAGNLVFQGTAAGQMHAYSADK  488 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSC-C---------------------------CCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             cceEEEEeCCCCcEEEEccCCCCC-c---------------------------CceeEeCCCEEEEECCcccchhhhhhc
Confidence            478999999998876544322110 0                           002245678888999999999999999


Q ss_pred             ccccccccCcccCE-EEEEEcCCCC-EEEEEe
Q 010816          461 QKLKQDLPGHADEV-FAVDWSPDGE-KVASGG  490 (500)
Q Consensus       461 ~~~~~~~~~h~~~V-~~l~~s~dg~-~l~s~~  490 (500)
                      ++.+..+....+.. .-+.+..+|+ +++.++
T Consensus       489 G~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          489 GEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             CCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            99876654332110 1223345665 444443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.88  E-value=1.3e-07  Score=88.71  Aligned_cols=238  Identities=12%  Similarity=0.028  Sum_probs=142.7

Q ss_pred             EEEEcCCCCeEEEEe----------CCCcEEEEeCCCCceeEEecCC-------CCCEEEEEEcCCCCEEEEEeC--CCe
Q 010816          113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKHLVSGSK--AGE  173 (500)
Q Consensus       113 ~~~~sp~~~~lat~~----------~d~~i~iwd~~~~~~~~~~~~h-------~~~v~~v~~s~~~~~l~s~~~--d~~  173 (500)
                      .+.|+||+++++.+.          .+++|.+||..+.+.+..+..+       ......+.|+|||++|+.+..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            699999999998886          3789999999999988776432       123557899999999998864  467


Q ss_pred             EEE--EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-----CeEEEE----ecCcccc
Q 010816          174 LQC--WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----RKCVIC----LSGHTLA  242 (500)
Q Consensus       174 i~~--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-----~~~~~~----~~~h~~~  242 (500)
                      +.+  +|+.+   ....-.+..     ....|.    ....+++.+.|+.+.+.|+.+     ++....    +.-...+
T Consensus       149 v~V~~iD~~t---v~~i~v~~~-----~~~~p~----g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P  216 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSASC-----FHIHPG----AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA  216 (368)
T ss_dssp             EEEEETTTEE---EEEEECSSC-----CCCEEE----ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred             EEEEEEchhh---ceEEECCCc-----eEEccC----CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence            888  99866   111100000     111121    123566777888888888876     332210    1001123


Q ss_pred             EEEEEeCCCCeEEEEeCCCeEEEEeCCCCe--eEEEeecCC------ce----EEEEEecCcceeeeccccCCCCCCCCH
Q 010816          243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGK--LIRELKGHG------HW----VNSLALSTEYALRTGAFDHTGKQYSSP  310 (500)
Q Consensus       243 v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~--~~~~~~~~~------~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (500)
                      .   .+..++.++..+. +.+.+.|...+.  .+..+....      .+    ...++++++                  
T Consensus       217 ~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d------------------  274 (368)
T 1mda_H          217 A---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN------------------  274 (368)
T ss_dssp             E---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT------------------
T ss_pred             c---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC------------------
Confidence            2   2444455666666 889999986432  222111000      00    000222222                  


Q ss_pred             HHHHHHHHHhhhhhcCCCCcEEEEe-e---C-----CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC-EEEEEe-
Q 010816          311 EEMKKAALERYNKIKGNAPERLVSG-S---D-----DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS-  379 (500)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~s~-s---~-----d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~lasgs-  379 (500)
                                        +.+++.+ .   .     ++.+.++|....+.......+.  ....++|+|||+ ++++.. 
T Consensus       275 ------------------g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~  334 (368)
T 1mda_H          275 ------------------TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             ------------------TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEET
T ss_pred             ------------------CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccC
Confidence                              2234332 2   1     2355699987654332222222  478899999997 566666 


Q ss_pred             CCCcEEEEeCCCCceEEEEeCCccc
Q 010816          380 FDKSIKLWNGTTGKFVAVFRGHVGP  404 (500)
Q Consensus       380 ~Dg~i~lwd~~~~~~~~~~~~h~~~  404 (500)
                      .++.|.++|+.+++.+.+++....+
T Consensus       335 ~~~~VsVID~~t~kvv~~I~vg~~P  359 (368)
T 1mda_H          335 GTEVLDIYDAASDQDQSSVELDKGP  359 (368)
T ss_dssp             TTTEEEEEESSSCEEEEECCCCSCC
T ss_pred             CCCeEEEEECCCCcEEEEEECCCCC
Confidence            5999999999999999887755443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.80  E-value=1.6e-07  Score=87.40  Aligned_cols=266  Identities=14%  Similarity=0.068  Sum_probs=149.5

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN  187 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~  187 (500)
                      ...+.++.+.+++.+.+ ++.+  +..+|. +++.+..............+.  +..|..++.++.|..+|.. ++....
T Consensus        59 ~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~  131 (330)
T 3hxj_A           59 EIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWR  131 (330)
T ss_dssp             GEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEE
T ss_pred             CCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEE
Confidence            34456777777776444 3333  888886 444333222222222222232  4567788889999999987 654321


Q ss_pred             cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEe
Q 010816          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWE  267 (500)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd  267 (500)
                       .......+.++..      .....+..++.++.+..+|.. ++....+......+.++....++.++.++  +.|..+|
T Consensus       132 -~~~~~~~~~~~~~------~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d  201 (330)
T 3hxj_A          132 -FKTKKAIYATPIV------SEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN  201 (330)
T ss_dssp             -EECSSCCCSCCEE------CTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC
T ss_pred             -EcCCCceeeeeEE------cCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC
Confidence             1111111222211      113457778888999999998 77665555444556666676778888877  8899999


Q ss_pred             CCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816          268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (500)
Q Consensus       268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~  347 (500)
                       .+++...........+.++...+                                     ...+..++.++.+..+|..
T Consensus       202 -~~g~~~~~~~~~~~~~~~~~~~~-------------------------------------~g~l~v~t~~~gl~~~~~~  243 (330)
T 3hxj_A          202 -PDGTEKWNFYAGYWTVTRPAISE-------------------------------------DGTIYVTSLDGHLYAINPD  243 (330)
T ss_dssp             -TTSCEEEEECCSSCCCSCCEECT-------------------------------------TSCEEEEETTTEEEEECTT
T ss_pred             -CCCcEEEEEccCCcceeceEECC-------------------------------------CCeEEEEcCCCeEEEECCC
Confidence             77776655443333233332221                                     1246667777888888742


Q ss_pred             CCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeee
Q 010816          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD  427 (500)
Q Consensus       348 ~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  427 (500)
                      . . ...........+.++.+.+++. |..++.+|.|..+|. +++.+..+......+                      
T Consensus       244 g-~-~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~----------------------  297 (330)
T 3hxj_A          244 G-T-EKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWII----------------------  297 (330)
T ss_dssp             S-C-EEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCC----------------------
T ss_pred             C-C-EeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccc----------------------
Confidence            2 1 1122222222333455665664 666778888999996 676654443211111                      


Q ss_pred             ccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816          428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       428 ~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                           ..+...++|+ |..|+.+|.+++...+.
T Consensus       298 -----~~~~~d~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          298 -----ATPVIDENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             -----SCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred             -----cceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence                 1112345665 55688999999987654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=0.00022  Score=74.73  Aligned_cols=309  Identities=13%  Similarity=0.084  Sum_probs=175.9

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec-------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~-------~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      ..|.++...+++.+.+ |..++.+..||..++....-..       -....|.++...++|.+.+. +.+ -+.+||..+
T Consensus       163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~  239 (781)
T 3v9f_A          163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANT  239 (781)
T ss_dssp             CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTT
T ss_pred             cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCC
Confidence            4688888888887655 4555568889887654321100       11356999998888876654 444 688999876


Q ss_pred             CCccccccc------CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec--------------Cccc
Q 010816          182 GKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--------------GHTL  241 (500)
Q Consensus       182 ~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~--------------~h~~  241 (500)
                      ++.......      -....|.++...      ....+-.|+..+-|.++|..++.......              -...
T Consensus       240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d------~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~  313 (781)
T 3v9f_A          240 ETFTNFHNNPGNIHGALSSYIFSIKQL------KDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNA  313 (781)
T ss_dssp             TEEEC-----------CCCCEEEEEEC------TTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSS
T ss_pred             CcEEEEEcCCCccccccCceEEEEEEC------CCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCC
Confidence            543211110      012335554432      22356667775678888887654322111              1235


Q ss_pred             cEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeec---------CCceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816          242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG---------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (500)
Q Consensus       242 ~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (500)
                      .|.++....++.|..|+.++-|..++..++........         ....|.++...+                     
T Consensus       314 ~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~---------------------  372 (781)
T 3v9f_A          314 SARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG---------------------  372 (781)
T ss_dssp             CEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT---------------------
T ss_pred             eEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC---------------------
Confidence            68999998899999999888899998776543221110         112344444332                     


Q ss_pred             HHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce--eeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816          313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT--RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT  390 (500)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~--~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~  390 (500)
                                      ...+..|+.++-+..++.........  ........|.++...++|.+.+ |+.++-+..+|..
T Consensus       373 ----------------~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~  435 (781)
T 3v9f_A          373 ----------------QGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTR  435 (781)
T ss_dssp             ----------------TSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSS
T ss_pred             ----------------CCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCC
Confidence                            12466677666688887542110000  0012345699999988887555 6777779999988


Q ss_pred             CCceEEEEe--CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccccc
Q 010816          391 TGKFVAVFR--GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP  468 (500)
Q Consensus       391 ~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  468 (500)
                      +++......  .....|.++                           ...++|.+.+ |.. +-+.+||..+++......
T Consensus       436 ~~~~~~~~~~~~~~~~v~~i---------------------------~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~  486 (781)
T 3v9f_A          436 LKKFQIIELEKNELLDVRVF---------------------------YEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYD  486 (781)
T ss_dssp             SCEEEECCSTTTCCCCEEEE---------------------------EECTTSEEEE-EET-TEEEEEESSSSSCCEEEC
T ss_pred             CCcEEEeccCCCCCCeEEEE---------------------------EECCCCCEEE-EEC-CceEEEeCCCCeEEeccc
Confidence            775432111  012233333                           2245555444 444 458889987765432211


Q ss_pred             C-----cccCEEEEEEcCCCCEEEEEeCCC
Q 010816          469 G-----HADEVFAVDWSPDGEKVASGGKDR  493 (500)
Q Consensus       469 ~-----h~~~V~~l~~s~dg~~l~s~~~D~  493 (500)
                      .     ....|.++...++|...+.....|
T Consensus       487 ~~~~~~~~~~i~~i~~d~~g~lWigt~~~G  516 (781)
T 3v9f_A          487 TSNSQLLENFVRSIAQDSEGRFWIGTFGGG  516 (781)
T ss_dssp             TTTSSCSCSCEEEEEECTTCCEEEEESSSC
T ss_pred             CcccccccceeEEEEEcCCCCEEEEEcCCC
Confidence            1     135788999988887655444345

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.65  E-value=0.00024  Score=74.33  Aligned_cols=312  Identities=13%  Similarity=0.075  Sum_probs=176.7

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec-------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~-------~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      ..|.++...+++.+.+.. .+ .+.+||..++....-..       -....|.++...++|. |..|+..+-|.++|..+
T Consensus       211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence            569999999988866543 44 68889987654221110       1245699999888875 44556656688888876


Q ss_pred             CCcccccc-------------cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---------Cc
Q 010816          182 GKPSGNPL-------------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---------GH  239 (500)
Q Consensus       182 ~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---------~h  239 (500)
                      ++......             .-....|.++...+      ...+-.|+.++-|..++...........         -.
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~------~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~  361 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS------FNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLS  361 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECS------SCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCS
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC------CCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCC
Confidence            54321100             01123455544322      2356667777788888876544322110         12


Q ss_pred             cccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEe---ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816          240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL---KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (500)
Q Consensus       240 ~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (500)
                      ...|.++....++.|..|+.++-|..||..++......   ......|.++...+                         
T Consensus       362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-------------------------  416 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-------------------------  416 (781)
T ss_dssp             SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-------------------------
T ss_pred             CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-------------------------
Confidence            35689998888899999998888999997654322110   01122344443322                         


Q ss_pred             HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee---cccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT---GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (500)
Q Consensus       317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~---~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~  393 (500)
                                  ...+..|+.++-+..++.....  .....   .....|.++...++|.+.+. +. +-|..||..+++
T Consensus       417 ------------~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          417 ------------EGNLWFGTYLGNISYYNTRLKK--FQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKK  480 (781)
T ss_dssp             ------------TSCEEEEETTEEEEEECSSSCE--EEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSS
T ss_pred             ------------CCCEEEEeccCCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCe
Confidence                        1245667766778888764321  11111   12356999999988875554 44 568899988776


Q ss_pred             eEEEEeCC-----cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc-
Q 010816          394 FVAVFRGH-----VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-  467 (500)
Q Consensus       394 ~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-  467 (500)
                      ........     ...+.++                           ...++|.+.+ |..++-+..||..+++...-. 
T Consensus       481 ~~~~~~~~~~~~~~~~i~~i---------------------------~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~  532 (781)
T 3v9f_A          481 VIHHYDTSNSQLLENFVRSI---------------------------AQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQ  532 (781)
T ss_dssp             CCEEECTTTSSCSCSCEEEE---------------------------EECTTCCEEE-EESSSCEEEECTTCCEEEEECT
T ss_pred             EEecccCcccccccceeEEE---------------------------EEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccC
Confidence            53322111     1222222                           3356676555 444334777887665432211 


Q ss_pred             -cC-cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          468 -PG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       468 -~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                       .+ ....|.++...++|...++.. +|.|..|+
T Consensus       533 ~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d  565 (781)
T 3v9f_A          533 YEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS  565 (781)
T ss_dssp             TTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred             CCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence             11 235688999888887555443 66535543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.61  E-value=2.5e-05  Score=78.22  Aligned_cols=114  Identities=13%  Similarity=0.105  Sum_probs=69.3

Q ss_pred             CCeEEEEeC-CCcEEEEeC-CCCceeEEecCCCCC-----------EEEEEEcCCCCE----EEEEeCCCeEEEEeCCCC
Q 010816          120 GRQLASGSG-DTTVRLWDL-NTQTPMFKCTGHKNW-----------VLCIAWSADGKH----LVSGSKAGELQCWDPQTG  182 (500)
Q Consensus       120 ~~~lat~~~-d~~i~iwd~-~~~~~~~~~~~h~~~-----------v~~v~~s~~~~~----l~s~~~d~~i~~wd~~~~  182 (500)
                      +..|+.++. ++.|.-+|. .+++.+.........           ...++++|.+..    |+.++.|+.|..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            455666666 888999999 888887765432110           122455444445    888899999999999999


Q ss_pred             Cccccc-ccCcccceEEEEeeeeecCCCCceEEEEe------CCCcEEEEECCCCeEEEEec
Q 010816          183 KPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLS  237 (500)
Q Consensus       183 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~s~s------~dg~v~iwd~~~~~~~~~~~  237 (500)
                      +..-.. ...+... ..+.-.|.-.   ..+++.++      .++.|+-+|.++++.+..+.
T Consensus       142 ~~~W~~~~~~~~~~-~~~~ssP~v~---~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          142 ETVWKVENSDIKVG-STLTIAPYVV---KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             CEEEEEECCCGGGT-CBCCSCCEEE---TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CEEEeecCCCCCcc-ceeecCCEEE---CCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence            864321 1111100 0111112111   13455554      38999999999999876554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.59  E-value=4.3e-06  Score=85.54  Aligned_cols=313  Identities=14%  Similarity=0.112  Sum_probs=157.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCcccccccCcccce------EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE
Q 010816          162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI------TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC  235 (500)
Q Consensus       162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~  235 (500)
                      +..|+.++.++.|..+|..+|+.+-..........      ..+.-.+.   ....+++.++.|+.|..+|..+++.+..
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVA---LWGDKVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCE---EEBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceE---EECCEEEEEcCCCEEEEEECCCCCEeee
Confidence            45677777888999999988875432111000000      00000000   1235788888999999999999998776


Q ss_pred             ecCcc----ccEEEEEeCCCCeEEEEeC------CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCC
Q 010816          236 LSGHT----LAVTCVKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (500)
Q Consensus       236 ~~~h~----~~v~~~~~~~~~~l~t~~~------dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (500)
                      +....    ..+.+...-.++.++.+..      ++.|..+|..+|+.+..+.....       .+...           
T Consensus       143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~-------~p~~~-----------  204 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPG-------DPALP-----------  204 (668)
T ss_dssp             EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC-------CTTSC-----------
T ss_pred             eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCC-------CCCcc-----------
Confidence            54321    1111100001456666543      58999999999998877642110       00000           


Q ss_pred             CCCCHHHHHHHHHHhh---------------hh-hcCCCCcEEEEeeCCC-------------------eEEEEcCCCCC
Q 010816          306 QYSSPEEMKKAALERY---------------NK-IKGNAPERLVSGSDDF-------------------TMFLWEPAVSK  350 (500)
Q Consensus       306 ~~~~~~~~~~~~~~~~---------------~~-~~~~~~~~~~s~s~d~-------------------~v~~wd~~~~~  350 (500)
                       .... .. ......+               .. ........++.++.++                   .|..+|....+
T Consensus       205 -~~~~-~~-~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~  281 (668)
T 1kv9_A          205 -YEHP-EL-REAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK  281 (668)
T ss_dssp             -CSSH-HH-HHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred             -cccc-cc-ccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc
Confidence             0000 00 0000000               00 0001123455555444                   37777776554


Q ss_pred             CCceeee-ccc-------CcEEEEEECCCCC---EEEEEeCCCcEEEEeCCCCceEEEEeCCcc-cEEEEEeeeeeeecC
Q 010816          351 QPKTRMT-GHQ-------QLVNHVYFSPDGQ---WVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVYQIRFELIYCFRY  418 (500)
Q Consensus       351 ~~~~~~~-~h~-------~~v~~l~~sp~g~---~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~  418 (500)
                      ....... .|.       .......+..+|+   .++.++.+|.++++|..+|+.+...+.... ....+......-...
T Consensus       282 ~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~  361 (668)
T 1kv9_A          282 LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEA  361 (668)
T ss_dssp             EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEEC
T ss_pred             eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccc
Confidence            3322221 122       1222223334665   688999999999999999998865543321 111110000000000


Q ss_pred             CCCce---eeeecccc-----ceeeEEcCCCCEEEEE------------------------------------ECCCcEE
Q 010816          419 PSNFY---CVVDMSCC-----MSLYSWSADSRLLLSG------------------------------------SKDSTLK  454 (500)
Q Consensus       419 ~~~~~---~~~~~~~~-----~~~~~~s~~~~~l~s~------------------------------------s~d~~v~  454 (500)
                      ....+   ........     -...+++|+..+++..                                    ..+|.|.
T Consensus       362 ~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~  441 (668)
T 1kv9_A          362 PGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALL  441 (668)
T ss_dssp             TTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEE
T ss_pred             ccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEE
Confidence            00000   00000000     0113566666555432                                    1347899


Q ss_pred             EEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          455 VWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       455 iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      .||+.+++.+-..+.+ ..+....+...+..++.++.|+.|+.|+
T Consensus       442 A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d  485 (668)
T 1kv9_A          442 AWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYS  485 (668)
T ss_dssp             EEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             EEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhh
Confidence            9999999876544322 2223333445678899999999999986

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.57  E-value=1.9e-05  Score=74.62  Aligned_cols=232  Identities=17%  Similarity=0.148  Sum_probs=130.3

Q ss_pred             eEEEEeCCCcEEEEECCCC----eEEEEec------Cc-cccEEEEEeCCCCeEEEEeCC------CeEEEEeCCCCeeE
Q 010816          212 RFVSASKDGDARIWDVSLR----KCVICLS------GH-TLAVTCVKWGGDGVIYTGSQD------CTIKVWETTQGKLI  274 (500)
Q Consensus       212 ~~~s~s~dg~v~iwd~~~~----~~~~~~~------~h-~~~v~~~~~~~~~~l~t~~~d------g~i~lwd~~~~~~~  274 (500)
                      .++++-.++.|.+.|+.+.    +...++.      .. ...-..+...+++.++++..+      +.|.+.|..+.+.+
T Consensus        98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~  177 (462)
T 2ece_A           98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPL  177 (462)
T ss_dssp             EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred             EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence            4667778899999998755    5555552      01 112234566788866665444      78999999999888


Q ss_pred             EEeecCCce---EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe----------------
Q 010816          275 RELKGHGHW---VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG----------------  335 (500)
Q Consensus       275 ~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----------------  335 (500)
                      ..+.....+   -..+.++++.                                    +.+++.                
T Consensus       178 ~~~~~~~~~~~~~Yd~~~~p~~------------------------------------~~mvsS~wg~p~~~~~g~~~~~  221 (462)
T 2ece_A          178 GKWEIDRGDQYLAYDFWWNLPN------------------------------------EVLVSSEWAVPNTIEDGLKLEH  221 (462)
T ss_dssp             EECCSBCTTCCCCCCEEEETTT------------------------------------TEEEECBCCCHHHHTTCCCTTT
T ss_pred             EEEccCCCCccccceEEECCCC------------------------------------CEEEEccCcCccccccccchhh
Confidence            877532111   1112223321                                    223333                


Q ss_pred             ---eCCCeEEEEcCCCCCCCceeee-c-ccCcEEEEEE--CCCCCEEEEEe------CCCcEEEEeCCCCceEEEEeCCc
Q 010816          336 ---SDDFTMFLWEPAVSKQPKTRMT-G-HQQLVNHVYF--SPDGQWVASAS------FDKSIKLWNGTTGKFVAVFRGHV  402 (500)
Q Consensus       336 ---s~d~~v~~wd~~~~~~~~~~~~-~-h~~~v~~l~~--sp~g~~lasgs------~Dg~i~lwd~~~~~~~~~~~~h~  402 (500)
                         ..+.+|.+||....+ ....+. + .......+.|  +|+|+++.+++      .+++|.+|....|+.... +   
T Consensus       222 ~~~~~~d~V~v~D~~~~k-~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~-~---  296 (462)
T 2ece_A          222 LKDRYGNRIHFWDLRKRK-RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAE-K---  296 (462)
T ss_dssp             HHHHSCCEEEEEETTTTE-EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEE-E---
T ss_pred             hhhccCCEEEEEECCCCc-EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEE-E---
Confidence               246789999986532 222222 1 1123455656  99999887766      567888887655432110 0   


Q ss_pred             ccEEEEEeeeeeeecCC---CCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEEEECCC---ccccccccCc-----
Q 010816          403 GPVYQIRFELIYCFRYP---SNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRT---QKLKQDLPGH-----  470 (500)
Q Consensus       403 ~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~---~~~~~~~~~h-----  470 (500)
                        +..+....... ..+   ..+..   .....+.+.+|+||++|.++.. .+.|.+||+..   .+++..++-.     
T Consensus       297 --vIdi~~~~v~~-~lp~~~~~f~~---~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~  370 (462)
T 2ece_A          297 --VIEIPAEPLEG-NLPEILKPFKA---VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHR  370 (462)
T ss_dssp             --EEEECCEECCS-SCCGGGGGGTE---ECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTC
T ss_pred             --EEeCCCccccc-ccccccccccc---CCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecc
Confidence              00010000000 000   00000   0123455678999999998876 67999999853   2333322211     


Q ss_pred             ------c---cCEEEEEEcCCCCEEEEEe
Q 010816          471 ------A---DEVFAVDWSPDGEKVASGG  490 (500)
Q Consensus       471 ------~---~~V~~l~~s~dg~~l~s~~  490 (500)
                            .   +.-..+.++|||++|+.+.
T Consensus       371 ~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          371 ADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             BCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence                  0   0235788999999999887

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.57  E-value=2.4e-05  Score=78.41  Aligned_cols=114  Identities=11%  Similarity=0.044  Sum_probs=64.5

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC---------EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc-c
Q 010816          120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW---------VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-L  189 (500)
Q Consensus       120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~---------v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~  189 (500)
                      +..++.++.++.+.-+|..+++.+.........         -..+++  .+..|+.++.|+.|..+|.++|+..-.. .
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            344555555444888999999887765432211         011122  3567888889999999999999864321 1


Q ss_pred             cCcccceEEEEeeeeecC--CCCc-eEEEEe------CCCcEEEEECCCCeEEEEe
Q 010816          190 SGHKKWITGISWEPVHLN--APCR-RFVSAS------KDGDARIWDVSLRKCVICL  236 (500)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~--~~~~-~~~s~s------~dg~v~iwd~~~~~~~~~~  236 (500)
                      ..+... ..+.-.|.-..  ..++ .++.++      .++.|.-+|..+++.+...
T Consensus       146 ~~~~~~-~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          146 ADHGAG-YTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             SCGGGT-CBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             CCCCcC-cccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence            111100 00111111110  0111 455554      3789999999999877654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.53  E-value=3.7e-05  Score=76.97  Aligned_cols=112  Identities=14%  Similarity=0.170  Sum_probs=67.7

Q ss_pred             CCeEEEEeC-CCcEEEEeC-CCCceeEEecCCCC----------CE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816          120 GRQLASGSG-DTTVRLWDL-NTQTPMFKCTGHKN----------WV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (500)
Q Consensus       120 ~~~lat~~~-d~~i~iwd~-~~~~~~~~~~~h~~----------~v-~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~  186 (500)
                      +..++.++. ++.|.-+|. .+++.+........          .+ ..+..  ++..|+.++.|+.+..+|..+|+..-
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            455666666 888999999 88888776542211          00 11222  35678888899999999999997643


Q ss_pred             cc-ccCcccceEEEEeeeeecCCCCceEEEEeC------CCcEEEEECCCCeEEEEec
Q 010816          187 NP-LSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLS  237 (500)
Q Consensus       187 ~~-~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~------dg~v~iwd~~~~~~~~~~~  237 (500)
                      .. ...+... ..+.-.|.-   ...+++.++.      ++.|..+|..+++.+..+.
T Consensus       140 ~~~~~~~~~~-~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          140 EVEVCDPKVG-STLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEECCCGGGT-CBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EecCCCCCcc-ceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            21 1111100 011111211   1234555554      7999999999998876554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.49  E-value=3.7e-05  Score=68.00  Aligned_cols=186  Identities=8%  Similarity=0.054  Sum_probs=116.2

Q ss_pred             EEEEEeCCCCeEEEEeC---CCeEEEEeCCCCeeEEEeecCCc-eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816          243 VTCVKWGGDGVIYTGSQ---DCTIKVWETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (500)
Q Consensus       243 v~~~~~~~~~~l~t~~~---dg~i~lwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (500)
                      ...+.|++++.|+.++.   ++.|+++|+.+++.++.+..... ....+++..                           
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g---------------------------   75 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN---------------------------   75 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---------------------------
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC---------------------------
Confidence            46678888787776543   58999999999998887653221 111222221                           


Q ss_pred             HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee-ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 010816          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV  397 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~  397 (500)
                                ....++.-.++.+.++|....+.. ..+ .+...   ...+++||+.|..+..++.|.++|..+.+.+..
T Consensus        76 ----------~~lyv~t~~~~~v~viD~~t~~v~-~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~  141 (266)
T 2iwa_A           76 ----------EKLYQVVWLKNIGFIYDRRTLSNI-KNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK  141 (266)
T ss_dssp             ----------TEEEEEETTCSEEEEEETTTTEEE-EEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred             ----------CEEEEEEecCCEEEEEECCCCcEE-EEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence                      123445556889999997643322 222 22011   133556787676666788999999999887766


Q ss_pred             EeCCc--cc---EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCc--
Q 010816          398 FRGHV--GP---VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH--  470 (500)
Q Consensus       398 ~~~h~--~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h--  470 (500)
                      +.-..  .+   .+.+                           .|. +|++.+....++.|.+.|..+++.+..+.-.  
T Consensus       142 I~Vg~~~~p~~~~nel---------------------------e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~  193 (266)
T 2iwa_A          142 HNVKYNGHRVIRLNEL---------------------------EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNL  193 (266)
T ss_dssp             EECEETTEECCCEEEE---------------------------EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHH
T ss_pred             EEECCCCcccccceeE---------------------------EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCc
Confidence            55321  11   1111                           344 6655555556789999999999887655321  


Q ss_pred             -----------ccCEEEEEEcCCCCEEEEEe-CCCcEEE
Q 010816          471 -----------ADEVFAVDWSPDGEKVASGG-KDRVLKL  497 (500)
Q Consensus       471 -----------~~~V~~l~~s~dg~~l~s~~-~D~~v~i  497 (500)
                                 ......++|+|++++|+.++ ...+|..
T Consensus       194 ~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~  232 (266)
T 2iwa_A          194 RKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE  232 (266)
T ss_dssp             HHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             ccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence                       13458999999987765544 5565543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.48  E-value=0.00032  Score=62.72  Aligned_cols=249  Identities=10%  Similarity=0.007  Sum_probs=132.2

Q ss_pred             EEEEEeCCCeEEEEeCCCCCccc----ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc
Q 010816          164 HLVSGSKAGELQCWDPQTGKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH  239 (500)
Q Consensus       164 ~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h  239 (500)
                      +|+.+.. +.|+.+++.......    ..+........++.|.+.    ....+++-..++.|..++.............
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~----~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~   77 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV----DKVVYWTDISEPSIGRASLHGGEPTTIIRQD   77 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT----TTEEEEEETTTTEEEEEESSSCCCEEEECTT
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecC----CCEEEEEECCCCEEEEEecCCCCcEEEEECC
Confidence            4444443 467888876543210    001111233456666542    2345566667789999998765443333322


Q ss_pred             cccEEEEEeCCC-CeEEEE-eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHH
Q 010816          240 TLAVTCVKWGGD-GVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA  317 (500)
Q Consensus       240 ~~~v~~~~~~~~-~~l~t~-~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (500)
                      ......++++++ +.++.+ ...+.|.+++................-..++++++                         
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~-------------------------  132 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPV-------------------------  132 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETT-------------------------
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeC-------------------------
Confidence            245677888864 555554 45678999987543221111111122344555442                         


Q ss_pred             HHhhhhhcCCCCcEE-EEeeC--CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCc
Q 010816          318 LERYNKIKGNAPERL-VSGSD--DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGK  393 (500)
Q Consensus       318 ~~~~~~~~~~~~~~~-~s~s~--d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l-asgs~Dg~i~lwd~~~~~  393 (500)
                                 ...+ ++...  .+.|..+++.... ............+.++++|++..| ++-...+.|.++|.....
T Consensus       133 -----------~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          133 -----------RGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             -----------TTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             -----------CCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence                       1223 22222  3567666654221 111111223457899999987655 455556889999986543


Q ss_pred             eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECCCccccccccCcc-
Q 010816          394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHA-  471 (500)
Q Consensus       394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~~h~-  471 (500)
                      ....+.+-..+ ..                           ++  +++..|+.+. ..+.|.++|..+++.+..+.... 
T Consensus       201 ~~~~~~~~~~P-~g---------------------------i~--~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~  250 (267)
T 1npe_A          201 RRKVLEGLQYP-FA---------------------------VT--SYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ  250 (267)
T ss_dssp             EEEEEECCCSE-EE---------------------------EE--EETTEEEEEETTTTEEEEEETTTTEEEEEECCSSC
T ss_pred             eEEEecCCCCc-eE---------------------------EE--EeCCEEEEEECCCCeEEEEeCCCCCceEEEccccc
Confidence            22222111111 01                           12  2345555555 56899999999888777665332 


Q ss_pred             cCEEEEEEcCCCC
Q 010816          472 DEVFAVDWSPDGE  484 (500)
Q Consensus       472 ~~V~~l~~s~dg~  484 (500)
                      ...+.+++.|++.
T Consensus       251 ~~p~gi~~~~~~~  263 (267)
T 1npe_A          251 TRLYGITIALSQC  263 (267)
T ss_dssp             CCCCCEEEECSCC
T ss_pred             cccceeeecCccC
Confidence            2467788888764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.45  E-value=9.5e-06  Score=83.11  Aligned_cols=114  Identities=18%  Similarity=0.248  Sum_probs=68.8

Q ss_pred             EEEEcC-CCCeEEEEeCCC-----------cEEEEeCCCCce--eEEe-cCCCCCEEEEEEcCCCCEEEEEeC-CCeEEE
Q 010816          113 SVAFSP-DGRQLASGSGDT-----------TVRLWDLNTQTP--MFKC-TGHKNWVLCIAWSADGKHLVSGSK-AGELQC  176 (500)
Q Consensus       113 ~~~~sp-~~~~lat~~~d~-----------~i~iwd~~~~~~--~~~~-~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~~  176 (500)
                      ++++.| +++.++.|+.+.           .+.+||..+++-  +..+ ..+.....++++..++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456677 888888887543           588999887642  2222 123333445777889999999885 468999


Q ss_pred             EeCCCCCccccc-ccCcccceEEEEeeeeecCCCCceEEEEe-CC-----CcEEEEECCCCeE
Q 010816          177 WDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSAS-KD-----GDARIWDVSLRKC  232 (500)
Q Consensus       177 wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~s~s-~d-----g~v~iwd~~~~~~  232 (500)
                      ||+.+.+..... +...... .++..     ..+++.++.|+ .+     ..+.+||..+.+-
T Consensus       270 yd~~t~~W~~~~~~~~~R~~-~s~~~-----~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGY-QSSAT-----MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSS-CEEEE-----CTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ecCcCCceeECCCCCccccc-cceEE-----ecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            998765422111 1111100 11111     12456778887 34     5789999887653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.43  E-value=3.7e-05  Score=76.99  Aligned_cols=115  Identities=10%  Similarity=0.076  Sum_probs=67.0

Q ss_pred             CCEEEEEeC-CCeEEEEeC-CCCCcccccccCcccceE------EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEE
Q 010816          162 GKHLVSGSK-AGELQCWDP-QTGKPSGNPLSGHKKWIT------GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV  233 (500)
Q Consensus       162 ~~~l~s~~~-d~~i~~wd~-~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~  233 (500)
                      +..|+.++. ++.|..+|. .+|+.+-.........+.      .+...|.   ....+++.++.|+.+..+|..+++.+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~v~~~dg~l~alD~~tG~~~  138 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLA---YGAGQIVKKQANGHLLALDAKTGKIN  138 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCE---EETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccE---EECCEEEEEeCCCEEEEEECCCCCEE
Confidence            345666666 788888888 788754221111000000      0000111   12357788888999999999999887


Q ss_pred             EEecCcc--c--cEEEEEeCCCCeEEEEeC------CCeEEEEeCCCCeeEEEeec
Q 010816          234 ICLSGHT--L--AVTCVKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELKG  279 (500)
Q Consensus       234 ~~~~~h~--~--~v~~~~~~~~~~l~t~~~------dg~i~lwd~~~~~~~~~~~~  279 (500)
                      .......  .  .+.+.....++.++.++.      ++.|..+|..+|+.+..+..
T Consensus       139 W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          139 WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            6543211  1  111100011567777665      79999999999998876653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.40  E-value=4.1e-05  Score=66.94  Aligned_cols=182  Identities=10%  Similarity=0.135  Sum_probs=109.8

Q ss_pred             EEEEEeCCCCeE-EEEeCCC--eEEEEeCCCCeeEEEeecCCceE-EEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816          243 VTCVKWGGDGVI-YTGSQDC--TIKVWETTQGKLIRELKGHGHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (500)
Q Consensus       243 v~~~~~~~~~~l-~t~~~dg--~i~lwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (500)
                      ...+.|+ ++.| .+.+.+|  .|+.+|+.+++.++.+....... ..++...                           
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g---------------------------   96 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK---------------------------   96 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET---------------------------
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC---------------------------
Confidence            4567777 4554 4555655  89999999999888765332211 1122211                           


Q ss_pred             HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 010816          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~  398 (500)
                                ....+..-.++.+.++|....+.. ..+.-..   ....+++|++.|+.+..++.|.++|..+.+.+..+
T Consensus        97 ----------~~ly~ltw~~~~v~v~D~~t~~~~-~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I  162 (262)
T 3nol_A           97 ----------DKIVGLTWKNGLGFVWNIRNLRQV-RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTI  162 (262)
T ss_dssp             ----------TEEEEEESSSSEEEEEETTTCCEE-EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred             ----------CEEEEEEeeCCEEEEEECccCcEE-EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEE
Confidence                      123344456889999997654332 2222111   11233457777776666788999999999887765


Q ss_pred             eCCc--ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCc------
Q 010816          399 RGHV--GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH------  470 (500)
Q Consensus       399 ~~h~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h------  470 (500)
                      ....  .++..+                        .-+.|. +|++.+..-.++.|.+.|.++++.+..+.-.      
T Consensus       163 ~V~~~g~~~~~l------------------------NELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~  217 (262)
T 3nol_A          163 TVTAHGEELPEL------------------------NELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEA  217 (262)
T ss_dssp             ECEETTEECCCE------------------------EEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGS
T ss_pred             EeccCCcccccc------------------------ceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccc
Confidence            5321  111100                        001233 6665555556789999999998876543221      


Q ss_pred             ------ccCEEEEEEcCCCCEEEEEeC
Q 010816          471 ------ADEVFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       471 ------~~~V~~l~~s~dg~~l~s~~~  491 (500)
                            .+-.+.++|+|+++.|..+|.
T Consensus       218 ~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          218 GPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             CSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ccccCcCCceEEEEEcCCCCEEEEECC
Confidence                  124579999999988887776

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.36  E-value=6.1e-05  Score=65.84  Aligned_cols=182  Identities=9%  Similarity=0.022  Sum_probs=111.1

Q ss_pred             EEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCce-EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816          243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (500)
Q Consensus       243 v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (500)
                      ...+.|+.+..+.+.+.+|.|+.+|+.+++.++.+ ..... -..+++..                              
T Consensus        57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g------------------------------  105 (268)
T 3nok_A           57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG------------------------------  105 (268)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS------------------------------
T ss_pred             cceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC------------------------------
Confidence            45667775445667788899999999999887765 22211 11222211                              


Q ss_pred             hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCC
Q 010816          322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH  401 (500)
Q Consensus       322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h  401 (500)
                             ....+..-.++.+.++|....+.. ..+.....   ...+++|++.|+.+..++.|.++|..+.+.+..+...
T Consensus       106 -------~~Ly~ltw~~~~v~V~D~~Tl~~~-~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~  174 (268)
T 3nok_A          106 -------ERLYQLTWTEGLLFTWSGMPPQRE-RTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVK  174 (268)
T ss_dssp             -------SCEEEEESSSCEEEEEETTTTEEE-EEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred             -------CEEEEEEccCCEEEEEECCcCcEE-EEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeC
Confidence                   123445557889999997643322 22221111   1223357887777777899999999999887766532


Q ss_pred             cc--cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC----------
Q 010816          402 VG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG----------  469 (500)
Q Consensus       402 ~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~----------  469 (500)
                      ..  ++..+                        .-+.|. +|++.+..-.++.|.+.|.++++.+..+.-          
T Consensus       175 ~~g~~v~~l------------------------NeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~  229 (268)
T 3nok_A          175 LRGQPVELI------------------------NELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQ  229 (268)
T ss_dssp             ETTEECCCE------------------------EEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTT
T ss_pred             CCCcccccc------------------------cccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccc
Confidence            21  11000                        011233 676555554678999999999887654321          


Q ss_pred             ---cccCEEEEEEcCCCCEEEEEeC
Q 010816          470 ---HADEVFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       470 ---h~~~V~~l~~s~dg~~l~s~~~  491 (500)
                         -.+-.+.++|+|+++.|..+|.
T Consensus       230 ~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          230 VTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             CCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             ccCcCCceEEEEEcCCCCEEEEeCC
Confidence               1134579999998877776665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.34  E-value=0.00038  Score=65.86  Aligned_cols=152  Identities=14%  Similarity=0.109  Sum_probs=91.9

Q ss_pred             EEc--CCCCeEEEE-eCCCcEEEEeCCCC----ceeEEec------C-CCCCEEEEEEcCCCCEEEEEeCC------CeE
Q 010816          115 AFS--PDGRQLASG-SGDTTVRLWDLNTQ----TPMFKCT------G-HKNWVLCIAWSADGKHLVSGSKA------GEL  174 (500)
Q Consensus       115 ~~s--p~~~~lat~-~~d~~i~iwd~~~~----~~~~~~~------~-h~~~v~~v~~s~~~~~l~s~~~d------~~i  174 (500)
                      .++  +++++|+.. ..++.|.|.|+.+.    +....+.      . -...-..+..+|+| +++++..+      +.|
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            346  788877655 46889999998754    2222231      0 11134556778999 77776555      789


Q ss_pred             EEEeCCCCCcccccccC-cc-cceEEEEeeeeecCCCCceEEEEe-------------------CCCcEEEEECCCCeEE
Q 010816          175 QCWDPQTGKPSGNPLSG-HK-KWITGISWEPVHLNAPCRRFVSAS-------------------KDGDARIWDVSLRKCV  233 (500)
Q Consensus       175 ~~wd~~~~~~~~~~~~~-~~-~~v~~~~~~~~~~~~~~~~~~s~s-------------------~dg~v~iwd~~~~~~~  233 (500)
                      .+.|.++++.......+ .. ..-..+.|+|     +.+.+++..                   .+.+|.+||+.+++.+
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-----~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~  241 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-----PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI  241 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTTCCCCCCEEEET-----TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred             EEEECCCCeEEEEEccCCCCccccceEEECC-----CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence            99999988765433212 11 1112344554     334666664                   3689999999988777


Q ss_pred             EEecCc-c-ccEEEEEe--CCCCe-E-EEEe-----CCCeEEEEeCCCCe
Q 010816          234 ICLSGH-T-LAVTCVKW--GGDGV-I-YTGS-----QDCTIKVWETTQGK  272 (500)
Q Consensus       234 ~~~~~h-~-~~v~~~~~--~~~~~-l-~t~~-----~dg~i~lwd~~~~~  272 (500)
                      .++.-. . ..-..+.|  ++++. + +++.     .+++|.+|....|+
T Consensus       242 ~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~  291 (462)
T 2ece_A          242 HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK  291 (462)
T ss_dssp             EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE
T ss_pred             eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc
Confidence            666432 1 22334444  88873 3 3444     66788887665443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.28  E-value=0.00065  Score=60.06  Aligned_cols=157  Identities=11%  Similarity=-0.004  Sum_probs=102.9

Q ss_pred             cEEEEEEcCCCCeEEEEeC--CCcEEEEeCCCCceeEEecCCC-CCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCcc
Q 010816          110 AVLSVAFSPDGRQLASGSG--DTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPS  185 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~--d~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s-~~~d~~i~~wd~~~~~~~  185 (500)
                      ....++|+|++.+.++.+.  ++.|++.|..+++.+..+.-.. .....+++.  ++.|.. .-.++.+.++|..+.+..
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            3578999999755555543  6799999999998877654211 122344443  555554 456789999999988765


Q ss_pred             cccccC-cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc-----ccEEEEEeCCCCeEEEEe-
Q 010816          186 GNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS-  258 (500)
Q Consensus       186 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~l~t~~-  258 (500)
                      ...-.+ ...  .++++       ++++++.+..++.|.+.|..+.+.+..+.-..     .....+.|. ++.+++.. 
T Consensus       100 ~~i~~g~~~g--~glt~-------Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~  169 (266)
T 2iwa_A          100 KNFTHQMKDG--WGLAT-------DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW  169 (266)
T ss_dssp             EEEECCSSSC--CEEEE-------CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             EEEECCCCCe--EEEEE-------CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence            432222 111  12221       33455555578899999999887766554211     124567777 67776655 


Q ss_pred             CCCeEEEEeCCCCeeEEEee
Q 010816          259 QDCTIKVWETTQGKLIRELK  278 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~  278 (500)
                      .++.|.+-|..+++.+..+.
T Consensus       170 ~~~~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          170 QTDCIARISAKDGTLLGWIL  189 (266)
T ss_dssp             TSSEEEEEETTTCCEEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEE
Confidence            57899999999999888775

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.23  E-value=0.00028  Score=70.66  Aligned_cols=117  Identities=9%  Similarity=0.090  Sum_probs=66.6

Q ss_pred             CCEEEEEeC-CCeEEEEeC-CCCCcccccccCccc---------c-eEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816          162 GKHLVSGSK-AGELQCWDP-QTGKPSGNPLSGHKK---------W-ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (500)
Q Consensus       162 ~~~l~s~~~-d~~i~~wd~-~~~~~~~~~~~~~~~---------~-v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~  229 (500)
                      +..|+.++. ++.|..+|. .+|+.+-........         . ..++...|.. .....+++.++.|+.+..+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~-g~~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGD-GKTPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCC-SSSCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecC-CcceeEEEEEcCCCEEEEEECCC
Confidence            446666666 788888888 788754221111000         0 0112221100 00112378888999999999999


Q ss_pred             CeEEEEecCcc----ccEEEEEeCCCCeEEEEe------CCCeEEEEeCCCCeeEEEeec
Q 010816          230 RKCVICLSGHT----LAVTCVKWGGDGVIYTGS------QDCTIKVWETTQGKLIRELKG  279 (500)
Q Consensus       230 ~~~~~~~~~h~----~~v~~~~~~~~~~l~t~~------~dg~i~lwd~~~~~~~~~~~~  279 (500)
                      ++.+.......    ..+.+.-.-.++.++.++      .++.|+-+|..+|+.+..+..
T Consensus       141 G~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            98876543221    011110000146777665      389999999999998876653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.22  E-value=0.00049  Score=59.57  Aligned_cols=184  Identities=10%  Similarity=0.101  Sum_probs=108.9

Q ss_pred             cEEEEEeCCCCeEEEEeCC--CeEEEEeCCCCeeEEEeecCCceE-EEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816          242 AVTCVKWGGDGVIYTGSQD--CTIKVWETTQGKLIRELKGHGHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL  318 (500)
Q Consensus       242 ~v~~~~~~~~~~l~t~~~d--g~i~lwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (500)
                      ....+.|+++..+.+.+.+  ..|+.+|+.+|+.++.+....... ..+++..                           
T Consensus        22 ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~---------------------------   74 (243)
T 3mbr_X           22 FTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR---------------------------   74 (243)
T ss_dssp             CEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---------------------------
T ss_pred             ccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC---------------------------
Confidence            3556777764344455554  489999999999888765432211 1122211                           


Q ss_pred             HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 010816          319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF  398 (500)
Q Consensus       319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~  398 (500)
                                .......-.++.+.++|....+.......+...  ..+  .+++..|..+..++.|.++|..+.+.+..+
T Consensus        75 ----------~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G--wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I  140 (243)
T 3mbr_X           75 ----------DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG--WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSI  140 (243)
T ss_dssp             ----------TEEEEEESSSSEEEEEETTTTEEEEEEECSSCC--CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             ----------CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc--eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEE
Confidence                      123444556889999997543322221111111  233  356766666666889999999999887766


Q ss_pred             eCCcc--cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC-------
Q 010816          399 RGHVG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-------  469 (500)
Q Consensus       399 ~~h~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-------  469 (500)
                      .-...  ++..+                        .-+.|. +|+..+..-.+..|.+.|.++++.+..+.-       
T Consensus       141 ~V~~~g~~~~~l------------------------NeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~  195 (243)
T 3mbr_X          141 KVTAGGRPLDNL------------------------NELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDA  195 (243)
T ss_dssp             ECEETTEECCCE------------------------EEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTT
T ss_pred             EEccCCcccccc------------------------eeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccc
Confidence            53211  11100                        001222 566555444677899999999887654321       


Q ss_pred             ------cccCEEEEEEcCCCCEEEEEeC
Q 010816          470 ------HADEVFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       470 ------h~~~V~~l~~s~dg~~l~s~~~  491 (500)
                            -.+-.+.++|+|+++.|...|.
T Consensus       196 ~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          196 DALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             ccccCCcCCceEEEEEcCCCCEEEEECC
Confidence                  1124579999999888877765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.20  E-value=0.0028  Score=56.47  Aligned_cols=233  Identities=11%  Similarity=0.008  Sum_probs=124.9

Q ss_pred             eEEEEeCCCcEEEEeCCCCcee-----EEecCCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCcccccccCcccc
Q 010816          122 QLASGSGDTTVRLWDLNTQTPM-----FKCTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGNPLSGHKKW  195 (500)
Q Consensus       122 ~lat~~~d~~i~iwd~~~~~~~-----~~~~~h~~~v~~v~~s~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~~  195 (500)
                      +|..+.. +.|+.+++.+....     ..+......+..++|+++++.|+. -..++.|..+++..+... .........
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~   80 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TIIRQDLGS   80 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEECTTCCC
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EEEECCCCC
Confidence            3444432 36777887654310     111112235678999997666654 445689999998755321 111111123


Q ss_pred             eEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC---CCeEEEEeCCCC
Q 010816          196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ---DCTIKVWETTQG  271 (500)
Q Consensus       196 v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~---dg~i~lwd~~~~  271 (500)
                      ..++.+.+.    ....+++-...+.|.++++...............-..+++++ ++.|+.+..   .+.|..++... 
T Consensus        81 p~~ia~d~~----~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-  155 (267)
T 1npe_A           81 PEGIALDHL----GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-  155 (267)
T ss_dssp             EEEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-
T ss_pred             ccEEEEEec----CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-
Confidence            455665441    223555666678899988864332222222223456788887 567766654   36788887643 


Q ss_pred             eeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC
Q 010816          272 KLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK  350 (500)
Q Consensus       272 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~  350 (500)
                      .....+. .....-..++++++.                                   ....++-...+.|..+|.....
T Consensus       156 ~~~~~~~~~~~~~P~gia~d~~~-----------------------------------~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          156 TNRRILAQDNLGLPNGLTFDAFS-----------------------------------SQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             CCCEEEECTTCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTEEE
T ss_pred             CCcEEEEECCCCCCcEEEEcCCC-----------------------------------CEEEEEECCCCEEEEEecCCCc
Confidence            3222221 112223444444321                                   1234455556788888864321


Q ss_pred             CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816          351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (500)
Q Consensus       351 ~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~  399 (500)
                       ......+ ......+++. .+.++++....+.|..+|..+++.+..+.
T Consensus       201 -~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          201 -RRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             -EEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             -eEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence             1111111 2234566654 34444444456899999999998877664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.14  E-value=0.00047  Score=69.07  Aligned_cols=113  Identities=13%  Similarity=0.000  Sum_probs=62.7

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCcccccccCcccceE-E---EEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC
Q 010816          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT-G---ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG  238 (500)
Q Consensus       163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~-~---~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~  238 (500)
                      ..|+.++.++.|..+|.++|+.+-........... +   +...+.   ....+++.++.|+.+.-+|..+++.+.....
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a---~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAA---IYGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCE---EETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccE---EECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            45555555445888888888754321110000000 0   000000   1235678888999999999999998766543


Q ss_pred             ccc----cEEE--EEeCC--CC--eEEEEe------CCCeEEEEeCCCCeeEEEee
Q 010816          239 HTL----AVTC--VKWGG--DG--VIYTGS------QDCTIKVWETTQGKLIRELK  278 (500)
Q Consensus       239 h~~----~v~~--~~~~~--~~--~l~t~~------~dg~i~lwd~~~~~~~~~~~  278 (500)
                      ...    .+.+  +....  ++  .+++++      .++.|.-+|..+|+.+....
T Consensus       146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~  201 (582)
T 1flg_A          146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence            210    1110  11111  12  566665      37899999999999887554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.13  E-value=0.0016  Score=59.92  Aligned_cols=241  Identities=10%  Similarity=0.011  Sum_probs=129.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccccc------------------CcccceEEEEeeeeecCCCCceE
Q 010816          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS------------------GHKKWITGISWEPVHLNAPCRRF  213 (500)
Q Consensus       152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~  213 (500)
                      ...+++|.++|+++.++..++.|..||..+++.......                  .......++.+.+     ....+
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-----~~g~l   94 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-----QNNQL   94 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-----TTTEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-----CCCcE
Confidence            346688889988788888899999999876543210000                  0012345565543     12345


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEe---cCc-cccEEEEEeCC-CCeEEEEeC------------------CCeEEEEeCCC
Q 010816          214 VSASKDGDARIWDVSLRKCVICL---SGH-TLAVTCVKWGG-DGVIYTGSQ------------------DCTIKVWETTQ  270 (500)
Q Consensus       214 ~s~s~dg~v~iwd~~~~~~~~~~---~~h-~~~v~~~~~~~-~~~l~t~~~------------------dg~i~lwd~~~  270 (500)
                      ..+...+.+..+|..++......   .+. ......+++.+ +|.++.+..                  ++.|..||..+
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            55555555888887655321111   111 12356788888 887766543                  26677788766


Q ss_pred             CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE-EEEeeCCCeEEEEcCCCC
Q 010816          271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDFTMFLWEPAVS  349 (500)
Q Consensus       271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~s~d~~v~~wd~~~~  349 (500)
                      ++....... ...-..++++++                                    +.. .++-+..+.|..+++...
T Consensus       175 ~~~~~~~~~-~~~p~gia~~~d------------------------------------g~~lyv~d~~~~~I~~~~~~~~  217 (322)
T 2fp8_A          175 KETTLLLKE-LHVPGGAEVSAD------------------------------------SSFVLVAEFLSHQIVKYWLEGP  217 (322)
T ss_dssp             TEEEEEEEE-ESCCCEEEECTT------------------------------------SSEEEEEEGGGTEEEEEESSST
T ss_pred             CEEEEeccC-CccCcceEECCC------------------------------------CCEEEEEeCCCCeEEEEECCCC
Confidence            653221111 011122333332                                    223 344455678888886532


Q ss_pred             CC-CceeeecccCcEEEEEECCCCCEEEEEeC----------CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816          350 KQ-PKTRMTGHQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY  418 (500)
Q Consensus       350 ~~-~~~~~~~h~~~v~~l~~sp~g~~lasgs~----------Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  418 (500)
                      .. ....+..... ...++++++|++.++...          .+.|..+|.. |+.+..+....+..    +        
T Consensus       218 ~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~----~--------  283 (322)
T 2fp8_A          218 KKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA----G--------  283 (322)
T ss_dssp             TTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT----T--------
T ss_pred             cCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc----c--------
Confidence            21 1111111223 678999999987766544          4678888874 66665554322100    0        


Q ss_pred             CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816          419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~  460 (500)
                                 ...+.+.+ .+++++++....+.|.++++..
T Consensus       284 -----------~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          284 -----------EHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             -----------SCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             -----------ccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence                       00111122 3566666666778888888753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.10  E-value=0.0001  Score=72.25  Aligned_cols=250  Identities=11%  Similarity=0.076  Sum_probs=130.9

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEecC-ccccEEEEEe-C-CCC-eEEEEe------------------CCCeEEEEeCC
Q 010816          212 RFVSASKDGDARIWDVSLRKCVICLSG-HTLAVTCVKW-G-GDG-VIYTGS------------------QDCTIKVWETT  269 (500)
Q Consensus       212 ~~~s~s~dg~v~iwd~~~~~~~~~~~~-h~~~v~~~~~-~-~~~-~l~t~~------------------~dg~i~lwd~~  269 (500)
                      .|+....+..|.+-|+.+.++...+.- .......+++ . +++ ++++++                  .++.+.+.|..
T Consensus       104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~  183 (595)
T 1fwx_A          104 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD  183 (595)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT
T ss_pred             EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC
Confidence            355556677899999999998774431 1233556666 3 444 566663                  34689999999


Q ss_pred             CCeeEEEeecCCceEEEEEecCcceeeecc-ccCCCCCCCCHHHHH-----------HHHHHhhhhhcCCCCcEEEEeeC
Q 010816          270 QGKLIRELKGHGHWVNSLALSTEYALRTGA-FDHTGKQYSSPEEMK-----------KAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       270 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      +.+...++.-.+. -..++++++....... .+.....  ......           ......  .+.... ...+    
T Consensus       184 t~~v~~qI~Vgg~-pd~~~~spdGk~~~vt~~~se~~~--~i~~~~~~~~d~v~V~~~~~~~~--~v~~Gk-~~~i----  253 (595)
T 1fwx_A          184 KWEVAWQVLVSGN-LDNCDADYEGKWAFSTSYNSEKGM--TLPEMTAAEMDHIVVFNIAEIEK--AIAAGD-YQEL----  253 (595)
T ss_dssp             TTEEEEEEEESSC-CCCEEECSSSSEEEEEESCTTCCS--SHHHHTCCSEEEEEEEEHHHHHH--HHHHTC-SEEE----
T ss_pred             CCeEEEEEEeCCC-ccceEECCCCCEEEEEecCcccCc--chhhccccccceEEEeeccceeE--eccCCC-eeEE----
Confidence            8888777654332 2345555554322111 1111000  000000           000000  000011 1111    


Q ss_pred             CCeEEEEcCCC--CCCCceeeecccCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceEE--EEeCCcccEEEEEeee
Q 010816          338 DFTMFLWEPAV--SKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFEL  412 (500)
Q Consensus       338 d~~v~~wd~~~--~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~  412 (500)
                       +.|.+.|...  .......+.. .....++.++|||+++++++ .+.+|.++|+.+.+...  .+.-....+..     
T Consensus       254 -~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~-----  326 (595)
T 1fwx_A          254 -NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE-----  326 (595)
T ss_dssp             -TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC-----
T ss_pred             -CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE-----
Confidence             4588999875  2221222211 23456799999999776554 67899999998643100  00000000000     


Q ss_pred             eeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC----------ccccccccCcccCE-----EEE
Q 010816          413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT----------QKLKQDLPGHADEV-----FAV  477 (500)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~----------~~~~~~~~~h~~~V-----~~l  477 (500)
                                   .......-..+|+|+|...++...|+.|-+||+.+          .+.+.++..|...-     .+.
T Consensus       327 -------------v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~  393 (595)
T 1fwx_A          327 -------------PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGE  393 (595)
T ss_dssp             -------------CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTT
T ss_pred             -------------cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccce
Confidence                         00011122247899994444566799999999876          34445555443211     123


Q ss_pred             EEcCCCCEEEEEeC
Q 010816          478 DWSPDGEKVASGGK  491 (500)
Q Consensus       478 ~~s~dg~~l~s~~~  491 (500)
                      ..+|||++|+++..
T Consensus       394 t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          394 TLDATNDWLVCLSK  407 (595)
T ss_dssp             STTCCSSEEEEEES
T ss_pred             EeCCCCCEEEEcCC
Confidence            45899999998743

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.07  E-value=0.00031  Score=72.96  Aligned_cols=157  Identities=11%  Similarity=0.058  Sum_probs=91.0

Q ss_pred             CCcc-cEEEEEEc-CCCCeEEEEeC-C----CcEEEEeCCCC-ceeEE-ecCCCCCEEEEEEcCCCCEEEEEeCC-----
Q 010816          106 GHTE-AVLSVAFS-PDGRQLASGSG-D----TTVRLWDLNTQ-TPMFK-CTGHKNWVLCIAWSADGKHLVSGSKA-----  171 (500)
Q Consensus       106 gh~~-~V~~~~~s-p~~~~lat~~~-d----~~i~iwd~~~~-~~~~~-~~~h~~~v~~v~~s~~~~~l~s~~~d-----  171 (500)
                      +|.- .+...+|| |||++||-+.. +    .+|+++|+.++ +.+.. +.   .....+.|+|||+.|+....|     
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence            4443 67889999 99999885532 2    35999999988 53211 11   113468899999988877665     


Q ss_pred             CeEEEEeCCCCCcccccc-c-CcccceEEEEeeeeecCCCCceEEEEe---CCCcEEEEECCCC--eE--EEEecCcccc
Q 010816          172 GELQCWDPQTGKPSGNPL-S-GHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVSLR--KC--VICLSGHTLA  242 (500)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~~s~s---~dg~v~iwd~~~~--~~--~~~~~~h~~~  242 (500)
                      ..|.++++.++......+ . .......++.|+|     +++.++..+   ....|+++|+..+  ..  .....+....
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  321 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-----DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV  321 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-----TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECC-----CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence            357788887654221111 1 1223345666665     455555443   2346788888765  22  2222333444


Q ss_pred             EEEEEeCCCCeEEEEe-CC----CeEEEEeCCC
Q 010816          243 VTCVKWGGDGVIYTGS-QD----CTIKVWETTQ  270 (500)
Q Consensus       243 v~~~~~~~~~~l~t~~-~d----g~i~lwd~~~  270 (500)
                      ..++.|..++.|+..+ .+    ..|..+|+.+
T Consensus       322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            5556655455544433 33    2566667654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.07  E-value=0.00096  Score=58.32  Aligned_cols=150  Identities=15%  Similarity=0.125  Sum_probs=94.3

Q ss_pred             ceEEEEeCCC--cEEEEECCCCeEEEEecCcccc-EEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEE
Q 010816          211 RRFVSASKDG--DARIWDVSLRKCVICLSGHTLA-VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL  287 (500)
Q Consensus       211 ~~~~s~s~dg--~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~  287 (500)
                      ..+.+.+.+|  .|+.+|+.+++.+..+.-.... -..++...+......-.++.+.+||..+.+.+.++...... ..+
T Consensus        54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~gl  132 (262)
T 3nol_A           54 YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGL  132 (262)
T ss_dssp             EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CCE
T ss_pred             EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eEE
Confidence            4667777766  8999999999987766432221 12234444433334446889999999999988887643211 111


Q ss_pred             EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee---ccc-CcE
Q 010816          288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT---GHQ-QLV  363 (500)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~---~h~-~~v  363 (500)
                      +.                                      .+..++.+..++.|.++|+...+.......   +.. ..+
T Consensus       133 t~--------------------------------------dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l  174 (262)
T 3nol_A          133 TH--------------------------------------NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPEL  174 (262)
T ss_dssp             EE--------------------------------------CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred             ec--------------------------------------CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence            11                                      123455555578899999865433222111   111 345


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816          364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (500)
Q Consensus       364 ~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~  400 (500)
                      +.+.|. +|...|..-.++.|.+.|..+|+.+..+..
T Consensus       175 NELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          175 NELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred             ceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence            667776 777666655688999999999999877653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.06  E-value=0.0066  Score=55.35  Aligned_cols=152  Identities=13%  Similarity=0.101  Sum_probs=84.2

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-C-eEEEEeCCCCCcccc
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G-ELQCWDPQTGKPSGN  187 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-~-~i~~wd~~~~~~~~~  187 (500)
                      ....++|+++++++++-..++.|..||..+... .... ....+..+++.++|+++++.... + .|..+|..+++....
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            456899999999777766889999999876432 2222 23468899999999866654332 2 466677776653211


Q ss_pred             cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-EEEec---------CccccEEEEEeCCCC-eE-E
Q 010816          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLS---------GHTLAVTCVKWGGDG-VI-Y  255 (500)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~~---------~h~~~v~~~~~~~~~-~l-~  255 (500)
                      ..........++..     ......+++-..++.|..+|...++. +....         +.-.....+  ++++ .| +
T Consensus       111 ~~~~~~~~~~g~~~-----~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv  183 (306)
T 2p4o_A          111 LTLPDAIFLNGITP-----LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV  183 (306)
T ss_dssp             EECTTCSCEEEEEE-----SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred             EeCCCccccCcccc-----cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence            00001111122221     11222345555678888888765431 21110         111122233  3333 44 4


Q ss_pred             EEeCCCeEEEEeCCC
Q 010816          256 TGSQDCTIKVWETTQ  270 (500)
Q Consensus       256 t~~~dg~i~lwd~~~  270 (500)
                      +-...+.|..||+..
T Consensus       184 ~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          184 SNTEKMLLLRIPVDS  198 (306)
T ss_dssp             EETTTTEEEEEEBCT
T ss_pred             EeCCCCEEEEEEeCC
Confidence            455677899998764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.03  E-value=0.0016  Score=56.97  Aligned_cols=150  Identities=15%  Similarity=0.100  Sum_probs=96.9

Q ss_pred             CceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEe
Q 010816          210 CRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL  289 (500)
Q Consensus       210 ~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~  289 (500)
                      ...+++.+.+|.|+++|+.+++.+..+-.....-..++...+......-.++.+.+||..+.+.+.++...... ..++.
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-wGLt~  143 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG-WGLCY  143 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCC-CCEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCce-eEEec
Confidence            35678888889999999999987665511111112355555544555567899999999999998887643211 11111


Q ss_pred             cCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee-ccc---CcEEE
Q 010816          290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT-GHQ---QLVNH  365 (500)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~-~h~---~~v~~  365 (500)
                                                            .+..++.+..++.|.++|+...+....... .+.   ..++.
T Consensus       144 --------------------------------------Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNe  185 (268)
T 3nok_A          144 --------------------------------------WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINE  185 (268)
T ss_dssp             --------------------------------------ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             --------------------------------------CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccc
Confidence                                                  123566666688999999765433222111 111   24567


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816          366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (500)
Q Consensus       366 l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~  399 (500)
                      +.|. +|...|..-.+..|.+-|..+|+.+..+.
T Consensus       186 Le~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          186 LECA-NGVIYANIWHSSDVLEIDPATGTVVGVID  218 (268)
T ss_dssp             EEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred             cEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence            7776 77766655568899999999999887765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.96  E-value=0.0043  Score=53.70  Aligned_cols=156  Identities=13%  Similarity=0.073  Sum_probs=98.9

Q ss_pred             cEEEEEEcCCCCeEEEEeCC--CcEEEEeCCCCceeEEecCCCCC-EEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCcc
Q 010816          110 AVLSVAFSPDGRQLASGSGD--TTVRLWDLNTQTPMFKCTGHKNW-VLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPS  185 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d--~~i~iwd~~~~~~~~~~~~h~~~-v~~v~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~  185 (500)
                      -...+.|++ +.+..+.+.+  ..|+++|+.+++.+....-.... -..+++  .++.|. ..-.++.+.++|.++.+..
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            456788987 5556666654  48999999999887766433222 122333  344444 4556899999999988765


Q ss_pred             cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc-----ccEEEEEeCCCCeEEEEe-C
Q 010816          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS-Q  259 (500)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~l~t~~-~  259 (500)
                      .....+...  .++++       +..+++.+..++.|.++|..+.+.+..+.-..     ..+..+.|. ++.++... .
T Consensus        99 ~ti~~~~~G--wglt~-------dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~  168 (243)
T 3mbr_X           99 ARFRYPGEG--WALTS-------DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL  168 (243)
T ss_dssp             EEEECSSCC--CEEEE-------CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             EEEeCCCCc--eEEee-------CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence            433222122  13322       23455555568899999999887766554211     234455665 56666655 5


Q ss_pred             CCeEEEEeCCCCeeEEEee
Q 010816          260 DCTIKVWETTQGKLIRELK  278 (500)
Q Consensus       260 dg~i~lwd~~~~~~~~~~~  278 (500)
                      +..|.+.|..+|+.+..+.
T Consensus       169 s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          169 TSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             TTEEEEECTTTCBEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEE
Confidence            7789999999988776553

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.93  E-value=0.0024  Score=62.64  Aligned_cols=67  Identities=13%  Similarity=0.079  Sum_probs=48.2

Q ss_pred             ceeeEEcCCCCEEEEEE-CCCcEEEEECCCcc------------ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          432 MSLYSWSADSRLLLSGS-KDSTLKVWDIRTQK------------LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       432 ~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~------------~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      ...+.++|||+++++++ .+.+|.++|+.+.+            ....+.. ...-..++|+|||...++.--|++|-.|
T Consensus       279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kw  357 (595)
T 1fwx_A          279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKW  357 (595)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEE
Confidence            34457899999887766 57899999998653            1222221 2356889999999444566779999999


Q ss_pred             c
Q 010816          499 M  499 (500)
Q Consensus       499 ~  499 (500)
                      +
T Consensus       358 d  358 (595)
T 1fwx_A          358 N  358 (595)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.89  E-value=0.014  Score=53.17  Aligned_cols=225  Identities=10%  Similarity=0.032  Sum_probs=118.8

Q ss_pred             eEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC--CC-eEEEEeCCCCe
Q 010816          196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ--DC-TIKVWETTQGK  272 (500)
Q Consensus       196 v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~--dg-~i~lwd~~~~~  272 (500)
                      ..++.|.+     ++..+++-..++.|..||...... ..+. .......+++.+++.++.+..  ++ .|..+|..+++
T Consensus        34 pegia~~~-----~g~lyv~d~~~~~I~~~d~~g~~~-~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           34 LENLASAP-----DGTIFVTNHEVGEIVSITPDGNQQ-IHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             EEEEEECT-----TSCEEEEETTTTEEEEECTTCCEE-EEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             cceEEECC-----CCCEEEEeCCCCeEEEECCCCceE-EEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            34555544     334555555678888888765432 2221 123567888998887766653  23 46667777776


Q ss_pred             eEEEeecC-CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC
Q 010816          273 LIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ  351 (500)
Q Consensus       273 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~  351 (500)
                      ........ ......++..+                                    ....+++...++.|+.+|......
T Consensus       107 ~~~~~~~~~~~~~~g~~~~~------------------------------------~~~~~v~d~~~g~i~~~d~~~~~~  150 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITPLS------------------------------------DTQYLTADSYRGAIWLIDVVQPSG  150 (306)
T ss_dssp             EEEEEECTTCSCEEEEEESS------------------------------------SSEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEEeCCCccccCcccccC------------------------------------CCcEEEEECCCCeEEEEeCCCCcE
Confidence            43322110 01111111100                                    011234444567777777542110


Q ss_pred             Cce---------eeecccCcEEEEEECCCCCEEE-EEeCCCcEEEEeCCC-CceEEEEeCCcccEEEEEeeeeeeecCCC
Q 010816          352 PKT---------RMTGHQQLVNHVYFSPDGQWVA-SASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPS  420 (500)
Q Consensus       352 ~~~---------~~~~h~~~v~~l~~sp~g~~la-sgs~Dg~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  420 (500)
                      ...         ...+.-...+.+  +|+++.|. +-...+.|+.|++.. ++.-     . ..+..       ...   
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~-----~-~~~~~-------~~~---  212 (306)
T 2p4o_A          151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG-----E-PEIFV-------EQT---  212 (306)
T ss_dssp             EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC-----C-CEEEE-------ESC---
T ss_pred             eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC-----c-cEEEe-------ccC---
Confidence            000         000111234555  78886554 445678899999864 3210     0 00000       000   


Q ss_pred             CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc--cccccCcccCEEEEEEc---CCCCEEEEEeCC
Q 010816          421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL--KQDLPGHADEVFAVDWS---PDGEKVASGGKD  492 (500)
Q Consensus       421 ~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~V~~l~~s---~dg~~l~s~~~D  492 (500)
                                ....+++.++|++.++-...+.|.++|.. ++.  +..+........+++|.   ||++.|+.++..
T Consensus       213 ----------~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          213 ----------NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             ----------CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ----------CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence                      11223568899887777778899999975 444  22233233568899998   898888776553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.88  E-value=0.0057  Score=56.21  Aligned_cols=237  Identities=12%  Similarity=0.103  Sum_probs=119.6

Q ss_pred             ceEEEEeCCCcEEEEECCCCeEEEEe-cC------------------ccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCC
Q 010816          211 RRFVSASKDGDARIWDVSLRKCVICL-SG------------------HTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQ  270 (500)
Q Consensus       211 ~~~~s~s~dg~v~iwd~~~~~~~~~~-~~------------------h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~  270 (500)
                      ..+.++..++.|..||...+...... ..                  .......+++.+ ++.|+.+...+.|..+|..+
T Consensus        31 ~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~  110 (322)
T 2fp8_A           31 KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEG  110 (322)
T ss_dssp             SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTC
T ss_pred             CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCC
Confidence            44777778888999988765432111 00                  012467788886 78888887777788898765


Q ss_pred             CeeEEEeec--C---CceEEEEEecC-cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEE
Q 010816          271 GKLIRELKG--H---GHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW  344 (500)
Q Consensus       271 ~~~~~~~~~--~---~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~w  344 (500)
                      +.. ..+..  .   ......+++.+ +..+........   +.... ....               ++.+..++.|..+
T Consensus       111 g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~---~~~~~-~~~~---------------~~~~~~~g~v~~~  170 (322)
T 2fp8_A          111 GHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTL---YDDRG-VQQI---------------MDTSDKTGRLIKY  170 (322)
T ss_dssp             EEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSS---CCTTC-HHHH---------------HHHTCCCEEEEEE
T ss_pred             CEE-EEecccCCCCcccccceEEEecCCCEEEEECCccc---ccccc-ccee---------------hcccCCCceEEEE
Confidence            532 22211  1   11234455555 432222111000   00000 0000               0001123556666


Q ss_pred             cCCCCCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCce--EEEEeCCcccEEEEEeeeeeeecCCCC
Q 010816          345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFELIYCFRYPSN  421 (500)
Q Consensus       345 d~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~  421 (500)
                      |.....  ...+.......+.++++|+|+.|..+ +..+.|++|++.....  ...+....+                  
T Consensus       171 d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g------------------  230 (322)
T 2fp8_A          171 DPSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN------------------  230 (322)
T ss_dssp             ETTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS------------------
T ss_pred             eCCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC------------------
Confidence            653221  11111112334678999999866554 5568999999875311  111110000                  


Q ss_pred             ceeeeeccccceeeEEcCCCCEEEEEEC----------CCcEEEEECCCccccccccCc----ccCEEEEEEcCCCCEEE
Q 010816          422 FYCVVDMSCCMSLYSWSADSRLLLSGSK----------DSTLKVWDIRTQKLKQDLPGH----ADEVFAVDWSPDGEKVA  487 (500)
Q Consensus       422 ~~~~~~~~~~~~~~~~s~~~~~l~s~s~----------d~~v~iwd~~~~~~~~~~~~h----~~~V~~l~~s~dg~~l~  487 (500)
                                ...+++.++|.+.++...          .+.|..+|.. ++.+..+...    ...+..+.+ .+++..+
T Consensus       231 ----------P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v  298 (322)
T 2fp8_A          231 ----------PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYI  298 (322)
T ss_dssp             ----------EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEE
T ss_pred             ----------CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEE
Confidence                      111255788886666544          4567888764 4544433322    234566666 3555555


Q ss_pred             EEeCCCcEEEec
Q 010816          488 SGGKDRVLKLWM  499 (500)
Q Consensus       488 s~~~D~~v~iW~  499 (500)
                      +....+.|..++
T Consensus       299 ~~~~~~~i~~~~  310 (322)
T 2fp8_A          299 GTLFHGSVGILV  310 (322)
T ss_dssp             ECSSCSEEEEEE
T ss_pred             eecCCCceEEEe
Confidence            555667776654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.61  E-value=0.016  Score=53.02  Aligned_cols=187  Identities=12%  Similarity=0.192  Sum_probs=107.3

Q ss_pred             eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE-
Q 010816          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-  331 (500)
Q Consensus       253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  331 (500)
                      .++.....+-+.+||+ +|+.++.+..  ..++.+.+-+...+.                             +..-+. 
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~-----------------------------g~~~dla   89 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLN-----------------------------GKKVDIA   89 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEET-----------------------------TEEEEEE
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccC-----------------------------CceEeEE
Confidence            4666667789999999 8999888754  345666655432110                             000112 


Q ss_pred             EEEeeC--CCeEEEEcCCCCCCCceeeec------cc-CcEEEEEE--CCC-CC-EEEEEeCCCcEEEEeCC---CC---
Q 010816          332 LVSGSD--DFTMFLWEPAVSKQPKTRMTG------HQ-QLVNHVYF--SPD-GQ-WVASASFDKSIKLWNGT---TG---  392 (500)
Q Consensus       332 ~~s~s~--d~~v~~wd~~~~~~~~~~~~~------h~-~~v~~l~~--sp~-g~-~lasgs~Dg~i~lwd~~---~~---  392 (500)
                      +++.-.  +++|.+|++.........+..      .. ..+..+++  +|. +. ++.+...+|.+..|++.   .|   
T Consensus        90 ~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~  169 (355)
T 3amr_A           90 AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS  169 (355)
T ss_dssp             EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred             EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence            233334  578999965322222222211      11 44566777  774 43 67778888999999873   22   


Q ss_pred             -ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC-----Ccccccc
Q 010816          393 -KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR-----TQKLKQD  466 (500)
Q Consensus       393 -~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~-----~~~~~~~  466 (500)
                       +.++.+.....+-                            .....+....|+.+-.|.-|..|+.+     +++.+..
T Consensus       170 ~~lVR~f~lgsq~E----------------------------gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~  221 (355)
T 3amr_A          170 GKKVRAFKMNSQTE----------------------------GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDR  221 (355)
T ss_dssp             EEEEEEEECSSCEE----------------------------EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEE
T ss_pred             ceEEEEecCCCCcc----------------------------eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEE
Confidence             3344443222111                            11346778889999998777777755     2334433


Q ss_pred             cc-Cc-ccCEEEEEE--cCCCC-EEEEEe-CCCcEEEec
Q 010816          467 LP-GH-ADEVFAVDW--SPDGE-KVASGG-KDRVLKLWM  499 (500)
Q Consensus       467 ~~-~h-~~~V~~l~~--s~dg~-~l~s~~-~D~~v~iW~  499 (500)
                      +. ++ ...+-.++.  .++|+ +|+.++ .+++..+|+
T Consensus       222 ~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          222 ADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             BSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             ecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            32 22 236777777  56666 555555 566777775

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.55  E-value=0.049  Score=50.02  Aligned_cols=269  Identities=10%  Similarity=0.061  Sum_probs=126.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc-c--cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEE
Q 010816          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-L--SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD  226 (500)
Q Consensus       150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd  226 (500)
                      ...+.+|.|.+++..+++ +.++.|. .....|+.-... .  ......+.++.+.+      ...++ ++.++.|..- 
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~------~~~~~-~g~~g~i~~S-  104 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG------NEGWI-VGEPPIMLHT-  104 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET------TEEEE-EEETTEEEEE-
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC------CeEEE-EECCCeEEEE-
Confidence            346889999877776764 5567652 223333321111 1  11234566776643      12333 4555644332 


Q ss_pred             CCCCeEEEEec---CccccEEEEEeCCCCeEEEEeCCCeEEE-EeCCCCeeE-EEeecCCceEEEEEecCcceeeecccc
Q 010816          227 VSLRKCVICLS---GHTLAVTCVKWGGDGVIYTGSQDCTIKV-WETTQGKLI-RELKGHGHWVNSLALSTEYALRTGAFD  301 (500)
Q Consensus       227 ~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~t~~~dg~i~l-wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~  301 (500)
                      ...++.-....   .+...+..+.+.+++.++.++.++.|.. .|  .|+.- .........+..+++.++         
T Consensus       105 ~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~---------  173 (327)
T 2xbg_A          105 TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPS---------  173 (327)
T ss_dssp             SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTT---------
T ss_pred             CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCC---------
Confidence            12222222111   1223456666666666666666665422 22  23222 222222333444444332         


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEE-EcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC
Q 010816          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL-WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF  380 (500)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~-wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~  380 (500)
                                                 ...++.+ .++.++. +|.. ...-..........+..+.+++++.+++. +.
T Consensus       174 ---------------------------~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~  223 (327)
T 2xbg_A          174 ---------------------------GEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VN  223 (327)
T ss_dssp             ---------------------------SCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEE-ET
T ss_pred             ---------------------------CcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEE-eC
Confidence                                       1233333 3444333 3320 11111111234456888999999876654 46


Q ss_pred             CCcEEEEeCCCCceEEEEeC----CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEE
Q 010816          381 DKSIKLWNGTTGKFVAVFRG----HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW  456 (500)
Q Consensus       381 Dg~i~lwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iw  456 (500)
                      +|.+++.+...|+.-..+..    +...+.                           .+++.+++.+++++. ++.+ ++
T Consensus       224 ~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~---------------------------~v~~~~~~~~~~~g~-~g~i-~~  274 (327)
T 2xbg_A          224 GGKIAFSDPDNSENWGELLSPLRRNSVGFL---------------------------DLAYRTPNEVWLAGG-AGAL-LC  274 (327)
T ss_dssp             TTEEEEEETTEEEEECCCBCTTSSCCSCEE---------------------------EEEESSSSCEEEEES-TTCE-EE
T ss_pred             CceEEEecCCCCCeeEeccCCcccCCcceE---------------------------EEEecCCCEEEEEeC-CCeE-EE
Confidence            78777764222221111110    001122                           224567777666554 6666 33


Q ss_pred             ECCCcccccccc---CcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          457 DIRTQKLKQDLP---GHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       457 d~~~~~~~~~~~---~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ....++.-..+.   .+...++++.|.++ ..++.++.+|+|.-++
T Consensus       275 S~DgG~tW~~~~~~~~~~~~~~~v~~~~~-~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          275 SQDGGQTWQQDVDVKKVPSNFYKILFFSP-DQGFILGQKGILLRYV  319 (327)
T ss_dssp             ESSTTSSCEECGGGTTSSSCCCEEEEEET-TEEEEECSTTEEEEEC
T ss_pred             eCCCCcccEEcCccCCCCCCeEEEEEECC-CceEEEcCCceEEEEc
Confidence            333332211111   22345788888754 4577888899887664

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.44  E-value=0.0097  Score=61.75  Aligned_cols=53  Identities=9%  Similarity=0.064  Sum_probs=32.1

Q ss_pred             eEEEEcCCCCCCC-ceeee-cccCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCCC
Q 010816          340 TMFLWEPAVSKQP-KTRMT-GHQQLVNHVYFSPDGQWVASASF---DKSIKLWNGTTG  392 (500)
Q Consensus       340 ~v~~wd~~~~~~~-~~~~~-~h~~~v~~l~~sp~g~~lasgs~---Dg~i~lwd~~~~  392 (500)
                      .|+.+++...... ..... ........+.|||||++|+..+.   ...|+++|+.++
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            5677776443211 11111 22345678899999999886653   346788888765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.41  E-value=0.09  Score=49.54  Aligned_cols=244  Identities=11%  Similarity=0.013  Sum_probs=130.4

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCccccccc
Q 010816          112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLS  190 (500)
Q Consensus       112 ~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~  190 (500)
                      .|.+..+.+ +|+.+ ....|+..++.+........+ ...+..++|.+.+..|+ +-...+.|..+++..+.... ...
T Consensus        80 ~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~~~  155 (386)
T 3v65_B           80 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-VVS  155 (386)
T ss_dssp             CEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-EEC
T ss_pred             eECCccccc-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-EEe
Confidence            355555533 33333 345688888876554433333 34578999997655555 44567889999987553211 111


Q ss_pred             CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC-C-CeEEEEe
Q 010816          191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ-D-CTIKVWE  267 (500)
Q Consensus       191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~-d-g~i~lwd  267 (500)
                      .......++++.+.    ....+++-...+.|.+.++........+......-..+++.+ ++.|+.+.. . +.|..++
T Consensus       156 ~~~~~p~glavd~~----~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          156 TGLESPGGLAVDWV----HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             SSCSCCCCEEEETT----TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCCCCccEEEEEeC----CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence            11112234444321    223455556667777777754432222333333456777775 456655443 3 6787777


Q ss_pred             CCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816          268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA  347 (500)
Q Consensus       268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~  347 (500)
                      +..............+-..++++++.                                   ....++-+..+.|..+|..
T Consensus       232 ~dG~~~~~~~~~~~~~PnGlavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          232 MDGSGRRIIADTHLFWPNGLTIDYAG-----------------------------------RRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEEGGG-----------------------------------TEEEEEETTTTEEEEECTT
T ss_pred             CCCCCcEEEEECCCCCeeeEEEeCCC-----------------------------------CEEEEEECCCCEEEEEeCC
Confidence            65332222222223334556655421                                   1233444456677777764


Q ss_pred             CCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816          348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (500)
Q Consensus       348 ~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~  400 (500)
                      ... ..............+++ ..+.++.+-...+.|..++..+|+.+.++..
T Consensus       277 G~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          277 GSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN  327 (386)
T ss_dssp             SCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CCe-eEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence            322 22222222344667777 3455666666678899998777776655543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.40  E-value=0.083  Score=49.01  Aligned_cols=245  Identities=12%  Similarity=0.026  Sum_probs=131.5

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCcccc
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGN  187 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~  187 (500)
                      +...|.+..+++.++++  ....|+..++.+........+ ...+..++|.+.+..|+ +-...+.|..+++..+.... 
T Consensus        34 d~~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-  109 (349)
T 3v64_C           34 DRRSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-  109 (349)
T ss_dssp             TSSCEEESSSCCEEEEE--CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-
T ss_pred             CCCcccccccCceeEee--cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-
Confidence            33456566664433333  334588888876544333333 34578999997665555 44467889999987654221 


Q ss_pred             cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC-C-CeEE
Q 010816          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ-D-CTIK  264 (500)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~-d-g~i~  264 (500)
                      ..........++++.+.    ....+++-...+.|.+.++........+......-..+++++ ++.|+.... . +.|.
T Consensus       110 ~~~~~~~~p~glavd~~----~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~  185 (349)
T 3v64_C          110 VVSTGLESPGGLAVDWV----HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE  185 (349)
T ss_dssp             EECSSCSCCCEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             EEeCCCCCccEEEEecC----CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence            11111122234444321    233456666677888888765433332333333456778876 556655443 3 6788


Q ss_pred             EEeCCCCeeEEEe-ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEE
Q 010816          265 VWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL  343 (500)
Q Consensus       265 lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~  343 (500)
                      .+++.. .....+ ......-..++++++.                                   ....++-+..+.|..
T Consensus       186 r~~~dG-~~~~~~~~~~~~~PnGla~d~~~-----------------------------------~~lY~aD~~~~~I~~  229 (349)
T 3v64_C          186 ASSMDG-SGRRIIADTHLFWPNGLTIDYAG-----------------------------------RRMYWVDAKHHVIER  229 (349)
T ss_dssp             EEETTS-CSCEESCCSSCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEE
T ss_pred             EEeCCC-CCcEEEEECCCCCcceEEEeCCC-----------------------------------CEEEEEECCCCEEEE
Confidence            787653 222222 2222334455555421                                   122334445567777


Q ss_pred             EcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816          344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (500)
Q Consensus       344 wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~  399 (500)
                      +|..... ..............+++ ..+.++.+-...+.|..++..+|+.+..+.
T Consensus       230 ~~~dG~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          230 ANLDGSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EETTSCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EeCCCCc-eEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            7754321 12222222344567777 345555666667888888877777665554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.39  E-value=0.06  Score=47.13  Aligned_cols=201  Identities=13%  Similarity=0.088  Sum_probs=108.9

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCccccc-ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816          146 CTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR  223 (500)
Q Consensus       146 ~~~h~~~v~~v~~s~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~  223 (500)
                      +.+-...+..++|+|+++.|++ ...++.|...|+. ++..... +.+ .....++++.+     ++..+++.-.++.+.
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~-----~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIG-----DNQFVISDERDYAIY   94 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECS-----TTEEEEEETTTTEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeC-----CCEEEEEECCCCcEE
Confidence            3455567999999998776655 6667888888987 6544332 222 23455666542     333445555667888


Q ss_pred             EEECCCCeE---EEEe------cCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCC---CCeeEEEeec-------CCce
Q 010816          224 IWDVSLRKC---VICL------SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT---QGKLIRELKG-------HGHW  283 (500)
Q Consensus       224 iwd~~~~~~---~~~~------~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~---~~~~~~~~~~-------~~~~  283 (500)
                      ++++.....   +...      ...+.....++|++.+ .|+++.......+|...   .+..+..+..       ....
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            887754332   1111      1234556789998765 66666554444555442   1111111100       0011


Q ss_pred             EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee-cc---
Q 010816          284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT-GH---  359 (500)
Q Consensus       284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~-~h---  359 (500)
                      ..+++++|                                   ..+..++.+..++.+..+|..........+. +.   
T Consensus       175 ~S~l~~dp-----------------------------------~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l  219 (255)
T 3qqz_A          175 VSGAEFNQ-----------------------------------QKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGL  219 (255)
T ss_dssp             CCEEEEET-----------------------------------TTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGC
T ss_pred             ceeEEEcC-----------------------------------CCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCc
Confidence            12222222                                   1234566666777788887543211111122 11   


Q ss_pred             ---cCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816          360 ---QQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (500)
Q Consensus       360 ---~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~  389 (500)
                         -..-..|+|.++|++.++ ++-+.++.+..
T Consensus       220 ~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          220 SHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             SSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             ccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence               135688999999986655 67777777754

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.19  E-value=0.17  Score=48.32  Aligned_cols=153  Identities=11%  Similarity=0.122  Sum_probs=86.4

Q ss_pred             cEEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-C----eEEEEeCCCCC
Q 010816          110 AVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G----ELQCWDPQTGK  183 (500)
Q Consensus       110 ~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-~----~i~~wd~~~~~  183 (500)
                      ....++++| ++..|..+...+.|+.+|..++.... +.........++|+++|++|+.+... +    .+...+. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            346889998 45556666555889999988765433 22344568899999999966665542 2    2333333 232


Q ss_pred             ccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEeCCCCe-EEEE-eC
Q 010816          184 PSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDGV-IYTG-SQ  259 (500)
Q Consensus       184 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~t~-~~  259 (500)
                      ... ..+. ......++++.|.    ++..+++-..++.|..++...+....... +....-..++|++++. |+.+ ..
T Consensus       216 ~~~~~~l~-~~~~p~giavdp~----~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          216 FKVITELT-KGQNCNGAETHPI----NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             SCSEEEEE-ECSSCCCEEECTT----TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             eeeeeeec-cCCCceEEEEeCC----CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence            210 0010 0111223333321    33455555667889999987665422111 1122345788998874 5544 46


Q ss_pred             CCeEEEEeCC
Q 010816          260 DCTIKVWETT  269 (500)
Q Consensus       260 dg~i~lwd~~  269 (500)
                      .+.|..++..
T Consensus       291 ~~~I~~~~~d  300 (430)
T 3tc9_A          291 QHYILRSDYD  300 (430)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEeCC
Confidence            7788887754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.16  E-value=0.014  Score=59.61  Aligned_cols=71  Identities=13%  Similarity=0.207  Sum_probs=47.4

Q ss_pred             EEEEcCCCCeEEEEeC-CCcEEEEeCCCCceeEEecCC-CCCEEEEEEcCCCCEEEEEe-CC-----CeEEEEeCCCCC
Q 010816          113 SVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGS-KA-----GELQCWDPQTGK  183 (500)
Q Consensus       113 ~~~~sp~~~~lat~~~-d~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~~~~l~s~~-~d-----~~i~~wd~~~~~  183 (500)
                      ++++.+++++++.|+. +..+.+||..+..-...-..+ ...-.++...+++++++.|+ .+     ..+.+||+.+.+
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            4677889999999984 568999998765321111111 12223455667899999988 44     568999998764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.15  E-value=0.17  Score=47.56  Aligned_cols=216  Identities=7%  Similarity=-0.082  Sum_probs=109.2

Q ss_pred             CCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEE-eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816          218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (500)
Q Consensus       218 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~-~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (500)
                      ....|+..++..........+ ......++|++ ++.|+.. ...+.|..+++..+.....+.........+++.+.   
T Consensus        94 ~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~---  169 (386)
T 3v65_B           94 NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV---  169 (386)
T ss_dssp             CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETT---
T ss_pred             cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeC---
Confidence            445678888766554433333 23466788874 4555544 46678888887655432222211111222333221   


Q ss_pred             eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE
Q 010816          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV  375 (500)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l  375 (500)
                                                      .+...++-...+.|.+.++.... ............+.++++|.+..|
T Consensus       170 --------------------------------~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~l  216 (386)
T 3v65_B          170 --------------------------------HDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTI  216 (386)
T ss_dssp             --------------------------------TTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEE
T ss_pred             --------------------------------CCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeE
Confidence                                            12233444555677777654322 222222333567899999876655


Q ss_pred             EEEe-CC-CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCc
Q 010816          376 ASAS-FD-KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDST  452 (500)
Q Consensus       376 asgs-~D-g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~  452 (500)
                      .... .. +.|..+++...............                           ...++++|++..|+.+. ..+.
T Consensus       217 y~td~~~~~~I~r~~~dG~~~~~~~~~~~~~---------------------------PnGlavd~~~~~lY~aD~~~~~  269 (386)
T 3v65_B          217 YWTDWGNTPRIEASSMDGSGRRIIADTHLFW---------------------------PNGLTIDYAGRRMYWVDAKHHV  269 (386)
T ss_dssp             EEEECSSSCEEEEEETTSCSCEEEECSSCSC---------------------------EEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEeccCCCCEEEEEeCCCCCcEEEEECCCCC---------------------------eeeEEEeCCCCEEEEEECCCCE
Confidence            4443 34 67887776543221111111111                           12236787666665554 4578


Q ss_pred             EEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          453 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       453 v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      |..+|+........+........++++. .+..+++-...+.|...
T Consensus       270 I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~  314 (386)
T 3v65_B          270 IERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSA  314 (386)
T ss_dssp             EEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEE
Confidence            9999876533322222223345677773 33333444445555544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.07  E-value=0.31  Score=49.06  Aligned_cols=165  Identities=11%  Similarity=0.020  Sum_probs=89.8

Q ss_pred             ccEEEEEEcCCCCeEEEE-eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCcc
Q 010816          109 EAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPS  185 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~  185 (500)
                      .....+++++.+..|..+ ...+.|.+.++.+..........-.....|++.|.+..|.-...  .+.|...++. |...
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~  162 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSR  162 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSC
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCce
Confidence            457789999976655555 46789999999765433333233345678899887555555443  3566666654 2221


Q ss_pred             cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEE
Q 010816          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV  265 (500)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~l  265 (500)
                      .......-..-.+++..+.    ..+.+++-+..+.|...|+..........+....-..+++..+..+++-...+.|..
T Consensus       163 ~~l~~~~~~~P~Glald~~----~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~  238 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYE----EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILA  238 (619)
T ss_dssp             EEEECSSCSSEEEEEEETT----TTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEE
T ss_pred             EEEEeCCCCCCcEEEEEcc----CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEE
Confidence            1111111223355655442    223455555667788887754332221111111112445555544445556778999


Q ss_pred             EeCCCCeeEEEee
Q 010816          266 WETTQGKLIRELK  278 (500)
Q Consensus       266 wd~~~~~~~~~~~  278 (500)
                      .|..+|+....+.
T Consensus       239 ~d~~tg~~~~~i~  251 (619)
T 3s94_A          239 CNKYTGEGLREIH  251 (619)
T ss_dssp             EESSSCCCCEECC
T ss_pred             EECCCCcccEEEe
Confidence            9988887655543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.05  E-value=0.19  Score=46.45  Aligned_cols=216  Identities=7%  Similarity=-0.081  Sum_probs=107.7

Q ss_pred             CCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEE-eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816          218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL  295 (500)
Q Consensus       218 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~-~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  295 (500)
                      ....|+..++..........+. .....++|++ ++.|+.. ...+.|..+++..+.....+.........+++.+.   
T Consensus        51 ~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~---  126 (349)
T 3v64_C           51 NRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV---  126 (349)
T ss_dssp             CBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT---
T ss_pred             cccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecC---
Confidence            3345777777655443333332 3467788874 4555554 45678888887654432222211112223333321   


Q ss_pred             eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE
Q 010816          296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV  375 (500)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l  375 (500)
                                                      .+...++-...+.|.+.++.... ........-...+.++++|.+..|
T Consensus       127 --------------------------------~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~l  173 (349)
T 3v64_C          127 --------------------------------HDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTI  173 (349)
T ss_dssp             --------------------------------TTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEE
T ss_pred             --------------------------------CCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeE
Confidence                                            12233444556677777754322 122222333557899999965544


Q ss_pred             -EEEeCC-CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCc
Q 010816          376 -ASASFD-KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDST  452 (500)
Q Consensus       376 -asgs~D-g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~  452 (500)
                       .+-... +.|..+++..... ..+-...                          -.....++++|++..|+.+. ..+.
T Consensus       174 y~td~~~~~~I~r~~~dG~~~-~~~~~~~--------------------------~~~PnGla~d~~~~~lY~aD~~~~~  226 (349)
T 3v64_C          174 YWTDWGNTPRIEASSMDGSGR-RIIADTH--------------------------LFWPNGLTIDYAGRRMYWVDAKHHV  226 (349)
T ss_dssp             EEEECSSSCEEEEEETTSCSC-EESCCSS--------------------------CSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             EEeccCCCCEEEEEeCCCCCc-EEEEECC--------------------------CCCcceEEEeCCCCEEEEEECCCCE
Confidence             444444 6788877653221 1111000                          00112346787666666554 4578


Q ss_pred             EEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          453 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       453 v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      |..+|+........+........++++. ++...++-...+.|...
T Consensus       227 I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~  271 (349)
T 3v64_C          227 IERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSA  271 (349)
T ss_dssp             EEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEE
Confidence            9999986543222222223345667763 33333333344555443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.04  E-value=0.19  Score=46.08  Aligned_cols=145  Identities=8%  Similarity=-0.094  Sum_probs=72.4

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec----CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~----~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      ...+.+|.|.+++..+|. +.++.| +...+.++.-....    .....+.+|.|.+ +. +..++.++.|.. ....|+
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence            347899999888887774 456655 33333332211111    1244688999976 33 444556665443 222233


Q ss_pred             ccccccc--CcccceEEEEeeeeecCCCCceEEEEeCCCcEEE-EECCCCeEE-EEecCccccEEEEEeCCCCeEEEEeC
Q 010816          184 PSGNPLS--GHKKWITGISWEPVHLNAPCRRFVSASKDGDARI-WDVSLRKCV-ICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (500)
Q Consensus       184 ~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i-wd~~~~~~~-~~~~~h~~~v~~~~~~~~~~l~t~~~  259 (500)
                      .-.....  .+...+..+.+.+     +. .++.++.++.|.. .|  .++.- ....++...+..+.+.+++.++..+.
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~-----~~-~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~  181 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALG-----NG-SAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS  181 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEE-----TT-EEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEET
T ss_pred             CceECccccCCCCCeEEEEEEC-----CC-CEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEEC
Confidence            2111110  1222344554322     22 3344445565432 22  12211 11234455688889988887776666


Q ss_pred             CCeEEE
Q 010816          260 DCTIKV  265 (500)
Q Consensus       260 dg~i~l  265 (500)
                      +|.+..
T Consensus       182 ~G~~~~  187 (327)
T 2xbg_A          182 RGSFYS  187 (327)
T ss_dssp             TSSEEE
T ss_pred             CCcEEE
Confidence            665544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.95  E-value=0.29  Score=46.77  Aligned_cols=47  Identities=11%  Similarity=-0.043  Sum_probs=30.4

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC
Q 010816          212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (500)
Q Consensus       212 ~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~  259 (500)
                      .+..+...+.|+.+|...+...... ........+++++++.|+.+..
T Consensus       154 ~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~  200 (433)
T 4hw6_A          154 DLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDD  200 (433)
T ss_dssp             EEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEEC
T ss_pred             EEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcC
Confidence            3444433388999998777655433 3344567888988877766654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.80  E-value=0.28  Score=46.95  Aligned_cols=192  Identities=8%  Similarity=0.003  Sum_probs=102.7

Q ss_pred             EEEEeCCC---CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHh
Q 010816          244 TCVKWGGD---GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (500)
Q Consensus       244 ~~~~~~~~---~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (500)
                      ..++|+++   +.|+.+...+.|+.+|..++...... ........++++++.                           
T Consensus       142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG---------------------------  193 (433)
T 4hw6_A          142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNG---------------------------  193 (433)
T ss_dssp             CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTC---------------------------
T ss_pred             ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCC---------------------------
Confidence            46788874   77777766689999998777654433 233345566665542                           


Q ss_pred             hhhhcCCCCcEEEEeeC---CC-eEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceE
Q 010816          321 YNKIKGNAPERLVSGSD---DF-TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFV  395 (500)
Q Consensus       321 ~~~~~~~~~~~~~s~s~---d~-~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~  395 (500)
                               ..+++...   +. .+...+..........+ ........++++| +|.+.++-..++.|+.+|..++...
T Consensus       194 ---------~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~  263 (433)
T 4hw6_A          194 ---------DMVVVDDQSSDTNTGIYLFTRASGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT  263 (433)
T ss_dssp             ---------CEEEEECCSCTTSEEEEEECGGGTTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE
T ss_pred             ---------CEEEEcCCCCcccceEEEEECCCCeeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE
Confidence                     22222211   11 12222221111100111 1223346688999 7777767667789999999877652


Q ss_pred             EEE-eCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECC--Ccccc--ccccC
Q 010816          396 AVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIR--TQKLK--QDLPG  469 (500)
Q Consensus       396 ~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~--~~~~~--~~~~~  469 (500)
                      ..+ .....+                          ....++++|+|+.|+.+. ..+.|+.++..  +++..  ..+.+
T Consensus       264 ~~~~~~~~~~--------------------------~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag  317 (433)
T 4hw6_A          264 EEEVMMDTKG--------------------------SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCG  317 (433)
T ss_dssp             EEEEECSCCS--------------------------SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEE
T ss_pred             EEEeccCCCC--------------------------CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEe
Confidence            222 110000                          001247899999555554 56789997754  23211  11111


Q ss_pred             ------c---------ccCEEEEEE---------cCCCCEEEEEeCCCcEEEec
Q 010816          470 ------H---------ADEVFAVDW---------SPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       470 ------h---------~~~V~~l~~---------s~dg~~l~s~~~D~~v~iW~  499 (500)
                            .         ...-..+++         .++|...++-...++|+.++
T Consensus       318 ~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          318 QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence                  1         123567888         66666655555566776653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.76  E-value=0.38  Score=45.41  Aligned_cols=244  Identities=11%  Similarity=0.000  Sum_probs=129.5

Q ss_pred             eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCC---cccccccCcccceE
Q 010816          122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGK---PSGNPLSGHKKWIT  197 (500)
Q Consensus       122 ~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-~~d~~i~~wd~~~~~---~~~~~~~~~~~~v~  197 (500)
                      +|+.+. ...|+..++.+....... .....+..++|.+.+..|+-+ ...+.|+.+++....   ..............
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            344433 467888888766543333 334568899999866666544 456889989886421   11111111222334


Q ss_pred             EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC--CCeEEEEeCCCCeeE
Q 010816          198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ--DCTIKVWETTQGKLI  274 (500)
Q Consensus       198 ~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~--dg~i~lwd~~~~~~~  274 (500)
                      ++++.+.    ....+++-...+.|.+.++........+.........++..+ .+.|+....  .+.|...++......
T Consensus       163 glavD~~----~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          163 GLAVDWI----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  238 (400)
T ss_dssp             EEEEETT----TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred             cEEEEec----CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence            4544321    233556666677888888765543333333333456778876 566665553  367888877543222


Q ss_pred             EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce
Q 010816          275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT  354 (500)
Q Consensus       275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~  354 (500)
                      ..+...-.+-..+++++..                                   ....++-+..+.|..+|..... ...
T Consensus       239 ~~~~~~l~~P~glavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~dG~~-~~~  282 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGN-RKT  282 (400)
T ss_dssp             EEECSSCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCC-CEE
T ss_pred             EEEECCCCceEEEEEEeCC-----------------------------------CEEEEEECCCCEEEEEeCCCCc-cEE
Confidence            2222222344556555421                                   1122333445677777754322 111


Q ss_pred             eeec--ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816          355 RMTG--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (500)
Q Consensus       355 ~~~~--h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~  408 (500)
                      ....  .-.....|++. .+.++.+-...+.|..+|..+|+.+..+.........+
T Consensus       283 ~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i  337 (400)
T 3p5b_L          283 ILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM  337 (400)
T ss_dssp             EEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred             EEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceE
Confidence            2221  12334566663 34555566667889999988887776665443333443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.76  E-value=0.32  Score=44.33  Aligned_cols=230  Identities=10%  Similarity=-0.022  Sum_probs=119.9

Q ss_pred             CCcEEEEeCCCCc-eeEEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816          129 DTTVRLWDLNTQT-PMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL  206 (500)
Q Consensus       129 d~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  206 (500)
                      ...|+..++.+.. ...........+..++|.+.+..| .+-...+.|..+++..+..........-....++++.+   
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~---   88 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW---   88 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET---
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc---
Confidence            4568888887653 111111112346789999865555 45556788999998765321111111111223444432   


Q ss_pred             CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC--CCeEEEEeCCCCeeEEEe-ecCCc
Q 010816          207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ--DCTIKVWETTQGKLIREL-KGHGH  282 (500)
Q Consensus       207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~--dg~i~lwd~~~~~~~~~~-~~~~~  282 (500)
                       .....+++-...+.|.+.++........+......-..+++.+ .+.|+.+..  .+.|...++.. .....+ ...-.
T Consensus        89 -~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~  166 (318)
T 3sov_A           89 -LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIY  166 (318)
T ss_dssp             -TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCS
T ss_pred             -CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCC
Confidence             1233455556667888888764432222223333446677775 466666553  46787777643 222222 22222


Q ss_pred             eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCc
Q 010816          283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL  362 (500)
Q Consensus       283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~  362 (500)
                      .-..++++++.                                   ....++-+..+.|..+|..... ......+....
T Consensus       167 ~Pnglavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~  210 (318)
T 3sov_A          167 WPNGLTLDYEE-----------------------------------QKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPH  210 (318)
T ss_dssp             CEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCS-CEEEECSCCSC
T ss_pred             CccEEEEeccC-----------------------------------CEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCC
Confidence            33455555421                                   1223344455677777754321 11122222344


Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816          363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (500)
Q Consensus       363 v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~  400 (500)
                      ...+++. .+.++.+-...+.|..++..+|+....+..
T Consensus       211 P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          211 PFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             ceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence            5677775 344555555678899999888876555543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.70  E-value=0.35  Score=44.00  Aligned_cols=227  Identities=13%  Similarity=0.035  Sum_probs=122.6

Q ss_pred             CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC---CcccccccCcccceEEEEeeeee
Q 010816          130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPVH  205 (500)
Q Consensus       130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~  205 (500)
                      ..|+..|+.+........ ....+..++|.++++.|+ +-...+.|..+++...   ......+...-....++++.+. 
T Consensus        10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~-   87 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-   87 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT-
T ss_pred             CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec-
Confidence            468888887765443333 344578999998765555 4455689999998751   1111111111122344544321 


Q ss_pred             cCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCC--CeEEEEeCCCCeeEEEe-ecCC
Q 010816          206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQD--CTIKVWETTQGKLIREL-KGHG  281 (500)
Q Consensus       206 ~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~d--g~i~lwd~~~~~~~~~~-~~~~  281 (500)
                         ....+++-...+.|.+.|+........+.........++.++ ++.|+.+...  +.|..+++. |.....+ ...-
T Consensus        88 ---~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~  163 (316)
T 1ijq_A           88 ---HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENI  163 (316)
T ss_dssp             ---TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSC
T ss_pred             ---CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCC
Confidence               223455656778888888865433322332223456778876 5666665543  678777764 3333332 2222


Q ss_pred             ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec--c
Q 010816          282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG--H  359 (500)
Q Consensus       282 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~--h  359 (500)
                      ..-..++++++.                                   ....++-+..+.|..+|..... .......  .
T Consensus       164 ~~P~gla~d~~~-----------------------------------~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~  207 (316)
T 1ijq_A          164 QWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGN-RKTILEDEKR  207 (316)
T ss_dssp             SCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCS-CEEEEECTTT
T ss_pred             CCceEEEEeccC-----------------------------------CEEEEEECCCCeEEEEecCCCc-eEEEeecCCc
Confidence            334455555421                                   1223344455677777765321 1111111  1


Q ss_pred             cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816          360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (500)
Q Consensus       360 ~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~  399 (500)
                      ......+++. .+.++.+-...+.|..++..+|+.+..+.
T Consensus       208 ~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          208 LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             TSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             cCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            2345677774 35566666667889999988887665554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.51  E-value=0.48  Score=43.30  Aligned_cols=144  Identities=12%  Similarity=0.187  Sum_probs=80.0

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCC----CCE--E--EEEeC--CCeEEEEeC--CCCCccc
Q 010816          119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD----GKH--L--VSGSK--AGELQCWDP--QTGKPSG  186 (500)
Q Consensus       119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~----~~~--l--~s~~~--d~~i~~wd~--~~~~~~~  186 (500)
                      ...+++.....+.+.+||+ +++.+..+..  +.+..|..-|+    |+.  +  ++.-.  +++|++|++  .++....
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            4456777778889999999 7777777653  45666666552    322  2  33334  578999955  4443211


Q ss_pred             c-----cccCcccceEEEEeeeeecCCCCc-eEEEEeCCCcEEEEECC-------CCeEEEEecCccccEEEEEeC-CCC
Q 010816          187 N-----PLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVS-------LRKCVICLSGHTLAVTCVKWG-GDG  252 (500)
Q Consensus       187 ~-----~~~~~~~~v~~~~~~~~~~~~~~~-~~~s~s~dg~v~iwd~~-------~~~~~~~~~~h~~~v~~~~~~-~~~  252 (500)
                      .     ++..-...+.+++....  ..... +++....+|.+..|++.       +.+.+..+.-.. .+..+... ..+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~--~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs-q~EgcvvDd~~g  192 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHS--QKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS-QTEGMAADDEYG  192 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEEC--TTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS-CEEEEEEETTTT
T ss_pred             ccccccCcCCCCCCeeEEEEEec--CCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC-CcceEEEcCCCC
Confidence            0     00011133444554110  01122 46667778999999883       234455554333 33344444 356


Q ss_pred             eEEEEeCCCeEEEEeC
Q 010816          253 VIYTGSQDCTIKVWET  268 (500)
Q Consensus       253 ~l~t~~~dg~i~lwd~  268 (500)
                      .|+.+-+|.-|..++.
T Consensus       193 ~Lyv~eEd~GIw~~da  208 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSA  208 (355)
T ss_dssp             EEEEEETTTEEEEEEC
T ss_pred             eEEEecccceEEEEeC
Confidence            7888888866555553

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.39  E-value=0.44  Score=41.59  Aligned_cols=205  Identities=10%  Similarity=0.155  Sum_probs=106.1

Q ss_pred             ecCccccEEEEEeCCC-CeEEE-EeCCCeEEEEeCCCCeeEEEeecC-CceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816          236 LSGHTLAVTCVKWGGD-GVIYT-GSQDCTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (500)
Q Consensus       236 ~~~h~~~v~~~~~~~~-~~l~t-~~~dg~i~lwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (500)
                      +.+-...+..++|+++ +.|++ ...++.|...|.. ++.++.+.-. ......+++.++.                   
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-------------------   81 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-------------------   81 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-------------------
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-------------------
Confidence            3455567889999875 45554 6678889999987 8877766422 1233344433321                   


Q ss_pred             HHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC--ceee------ecccCcEEEEEECCCCCEEEEEeCCCcE
Q 010816          313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP--KTRM------TGHQQLVNHVYFSPDGQWVASASFDKSI  384 (500)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~--~~~~------~~h~~~v~~l~~sp~g~~lasgs~Dg~i  384 (500)
                                       ..+++.-.++.+.++++......  ....      .........|+|+|+++.|.++......
T Consensus        82 -----------------~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~  144 (255)
T 3qqz_A           82 -----------------QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPI  144 (255)
T ss_dssp             -----------------EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSE
T ss_pred             -----------------EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCc
Confidence                             12233333455666554332210  0011      1123346899999998766666655444


Q ss_pred             EEEeCCC---CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEECCCcEEEEECCC
Q 010816          385 KLWNGTT---GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       385 ~lwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s~d~~v~iwd~~~  460 (500)
                      .+|....   ...+.....           ..  +....      . -...+.+++.|... +++.....+.+.++|...
T Consensus       145 ~i~~~~g~~~~~~l~i~~~-----------~~--~~~~~------~-~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g  204 (255)
T 3qqz_A          145 EVYKVNGLLSSNELHISKD-----------KA--LQRQF------T-LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG  204 (255)
T ss_dssp             EEEEEESTTCSSCCEEEEC-----------HH--HHHTC------C-SSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             eEEEEcccccCCceeeecc-----------hh--hcccc------c-cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence            5554321   111111100           00  00000      0 01134456666654 444444556777787654


Q ss_pred             ccccc--ccc-Cc------ccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          461 QKLKQ--DLP-GH------ADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       461 ~~~~~--~~~-~h------~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      . .+.  .+. +.      ...--.++|.++|+ |..+++-+.++.+.
T Consensus       205 ~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          205 E-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             C-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred             C-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence            3 322  222 21      12456899999997 66668878777664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.27  E-value=0.51  Score=44.21  Aligned_cols=144  Identities=17%  Similarity=0.226  Sum_probs=89.0

Q ss_pred             cCCCCeEEEEeCCCcEEEEeCCCCceeEEecCC----CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc-----
Q 010816          117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH----KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-----  187 (500)
Q Consensus       117 sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h----~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~-----  187 (500)
                      ..+|..++.+- ++.||.-++........+...    -..|..+..||+|++||..+ +..|.+-.+-.+.....     
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            35666666653 478888888754444443322    22577899999999998875 55777776653221100     


Q ss_pred             --------ccc----CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC--eEEEEec---------CccccEE
Q 010816          188 --------PLS----GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLS---------GHTLAVT  244 (500)
Q Consensus       188 --------~~~----~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~--~~~~~~~---------~h~~~v~  244 (500)
                              .+.    .....|..+.|+|...+  +..+++-..|+.||+||+...  +.. .+.         .....|.
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~--ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~  183 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYR--DSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT  183 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGG--GCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCC--CCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence                    010    12456899999997754  346888889999999999752  111 232         2225677


Q ss_pred             EEEeCCCCe-EEE--EeCCCeEEE
Q 010816          245 CVKWGGDGV-IYT--GSQDCTIKV  265 (500)
Q Consensus       245 ~~~~~~~~~-l~t--~~~dg~i~l  265 (500)
                      +++|.+++. |+.  .+..|.|.-
T Consensus       184 S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          184 DLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EEEECTTSSCEEEEECTTSCEEEE
T ss_pred             EEEEcCCCcEEEEEecCCCCCEEE
Confidence            888887662 444  335565543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.23  E-value=0.071  Score=54.58  Aligned_cols=228  Identities=12%  Similarity=0.022  Sum_probs=110.3

Q ss_pred             CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC---CcccccccCcccceEEEEeeee
Q 010816          129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPV  204 (500)
Q Consensus       129 d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~  204 (500)
                      ...|+..++.+......... ...+..|+|.+.+..|+.+. ..+.|+.+++...   ......+........++++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            35677777766543322222 23456789998766666554 4578999988651   1111111111112233443321


Q ss_pred             ecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC--CCeEEEEeCCCCeeEEEe-ecC
Q 010816          205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ--DCTIKVWETTQGKLIREL-KGH  280 (500)
Q Consensus       205 ~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~--dg~i~lwd~~~~~~~~~~-~~~  280 (500)
                          ....+++-...+.|.+.++........+.........+++.+ .+.|+.+..  .+.|..+++.. .....+ ...
T Consensus       464 ----~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~  538 (699)
T 1n7d_A          464 ----HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTEN  538 (699)
T ss_dssp             ----SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSS
T ss_pred             ----CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCC
Confidence                223455555677888888765443332222222234566665 345554443  25666666532 211111 111


Q ss_pred             CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee--c
Q 010816          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--G  358 (500)
Q Consensus       281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~--~  358 (500)
                      ...-..++++++                                   .....++-+..+.|..+++.... ......  +
T Consensus       539 l~~PnGlavd~~-----------------------------------~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~  582 (699)
T 1n7d_A          539 IQWPNGITLDLL-----------------------------------SGRLYWVDSKLHSISSIDVNGGN-RKTILEDEK  582 (699)
T ss_dssp             CSSCCCEEECTT-----------------------------------TCCEEEEETTTTEEEEECSSSSC-CEEECCCSS
T ss_pred             CCCccEEEEecc-----------------------------------CCEEEEEecCCCeEEEEccCCCc-eEEEEecCC
Confidence            112223333322                                   12234444556677777764321 111111  1


Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816          359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR  399 (500)
Q Consensus       359 h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~  399 (500)
                      .......|++..+ .++++....+.|..++..+|+.+.++.
T Consensus       583 ~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          583 RLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             SCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             cCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            1112234455443 455555566889999988887766554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.13  E-value=0.76  Score=41.75  Aligned_cols=180  Identities=10%  Similarity=-0.065  Sum_probs=88.7

Q ss_pred             CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-EEEecCccccEEEEEeC
Q 010816          171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWG  249 (500)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~~~h~~~v~~~~~~  249 (500)
                      ...|+..++.........+........++.|.+.    ....+.+-...+.|+.+++..... ...+.........+++.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~----~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd   87 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS----HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD   87 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGG----GTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEE
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeC----CCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEE
Confidence            4678888887553111111112233456777653    223555656677888888765421 11111111122344554


Q ss_pred             C-CCeE-EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816          250 G-DGVI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (500)
Q Consensus       250 ~-~~~l-~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (500)
                      . ++.| ++-...+.|.++++........+......-..+++.+..                                  
T Consensus        88 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~----------------------------------  133 (318)
T 3sov_A           88 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS----------------------------------  133 (318)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG----------------------------------
T ss_pred             cCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC----------------------------------
Confidence            3 3444 444556788888875432222222222233445554321                                  


Q ss_pred             CCcEEEEee--CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEE-EeCCCcEEEEeCCC
Q 010816          328 APERLVSGS--DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTT  391 (500)
Q Consensus       328 ~~~~~~s~s--~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~las-gs~Dg~i~lwd~~~  391 (500)
                        ..+....  ..+.|...++.... ........-...+.|+++|++..|.. -+..+.|..+|+..
T Consensus       134 --g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          134 --GFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             --TEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             --CEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence              1222222  24556666543221 11111222345789999997665554 45567899999864

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.89  E-value=2.6  Score=45.75  Aligned_cols=72  Identities=18%  Similarity=0.164  Sum_probs=47.5

Q ss_pred             cccEEEEEEcCC------CCeEEEEeC-CCcEEEEeCCCCceeEEec-CCCCCEEEEEEc--CCCCEEEEEeCCCeEEEE
Q 010816          108 TEAVLSVAFSPD------GRQLASGSG-DTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWS--ADGKHLVSGSKAGELQCW  177 (500)
Q Consensus       108 ~~~V~~~~~sp~------~~~lat~~~-d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s--~~~~~l~s~~~d~~i~~w  177 (500)
                      .+.|.|+++.|.      ++++|.|.. |++|+|+++.+-+.+.... +-+....++.+.  ....+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            357999999864      368999997 9999999998765553321 111233344332  233578888899987655


Q ss_pred             eC
Q 010816          178 DP  179 (500)
Q Consensus       178 d~  179 (500)
                      .+
T Consensus       633 ~~  634 (1158)
T 3ei3_A          633 GL  634 (1158)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.80  E-value=1.1  Score=40.71  Aligned_cols=215  Identities=10%  Similarity=-0.054  Sum_probs=106.5

Q ss_pred             CCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEE-eCCCeEEEEeCCCC---eeEEE-eecCCceEEEEEecCc
Q 010816          219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQG---KLIRE-LKGHGHWVNSLALSTE  292 (500)
Q Consensus       219 dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~-~~dg~i~lwd~~~~---~~~~~-~~~~~~~v~~~~~~~~  292 (500)
                      ...|+..|+........+.. ......++|++ ++.|+.+ ...+.|..+++...   ..... +.........+++.+.
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            35688888877654443332 34466788876 3555554 45688988887651   11111 1111111223333211


Q ss_pred             ceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC
Q 010816          293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG  372 (500)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g  372 (500)
                                                         .+...++-...+.|.+.++... ...............++++|.+
T Consensus        88 -----------------------------------~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~iavdp~~  131 (316)
T 1ijq_A           88 -----------------------------------HSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVH  131 (316)
T ss_dssp             -----------------------------------TTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTT
T ss_pred             -----------------------------------CCeEEEEECCCCEEEEEeCCCC-ceEEEEECCCCCcceEEeCCCC
Confidence                                               1123344455677777775432 1112222233567899999966


Q ss_pred             CEEEEEeCC--CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-C
Q 010816          373 QWVASASFD--KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-K  449 (500)
Q Consensus       373 ~~lasgs~D--g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~  449 (500)
                      ..|..+...  +.|...++. |.....+....                          -.....+++++++..|+.+. .
T Consensus       132 g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~--------------------------~~~P~gla~d~~~~~lY~~D~~  184 (316)
T 1ijq_A          132 GFMYWTDWGTPAKIKKGGLN-GVDIYSLVTEN--------------------------IQWPNGITLDLLSGRLYWVDSK  184 (316)
T ss_dssp             TEEEEEECSSSCEEEEEETT-SCCEEEEECSS--------------------------CSCEEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEccCCCCeEEEEcCC-CCCeEEEEECC--------------------------CCCceEEEEeccCCEEEEEECC
Confidence            555444432  677777764 32222221100                          00112346787776666555 5


Q ss_pred             CCcEEEEECCCcccccccc--CcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          450 DSTLKVWDIRTQKLKQDLP--GHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       450 d~~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      .+.|..+|+..........  +......++++.. +..+++-...++|...
T Consensus       185 ~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~  234 (316)
T 1ijq_A          185 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSA  234 (316)
T ss_dssp             TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             CCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEE
Confidence            5789999986532211111  1123345667642 3344444445566554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.80  E-value=1.1  Score=40.65  Aligned_cols=77  Identities=14%  Similarity=0.087  Sum_probs=52.2

Q ss_pred             cEEEEEECCCCCEEEEEeCC-CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816          362 LVNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (500)
Q Consensus       362 ~v~~l~~sp~g~~lasgs~D-g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  440 (500)
                      ..+.++..++|+..++++.- +.|...+.... .+..+-        +        ..+..     ........+++.|+
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~--------~--------~~~~~-----~~~~G~nGIv~~pd  195 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFA--------W--------ESGNG-----GQRPGYSGITFDPH  195 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEE--------E--------CCCCS-----SSCCSCSEEEEETT
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeee--------e--------cCCCc-----ccccCcceEEEeCC
Confidence            48899999999999999988 88877776533 222110        0        00000     01123345578999


Q ss_pred             CCEEEEEECCCcEEEEECCC
Q 010816          441 SRLLLSGSKDSTLKVWDIRT  460 (500)
Q Consensus       441 ~~~l~s~s~d~~v~iwd~~~  460 (500)
                      |..|++...++.+..+|+..
T Consensus       196 g~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          196 SNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             TTEEEEESSSSSEEEEECSS
T ss_pred             CCEEEEEcCCCeEEEEcCCC
Confidence            99998887799999999874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.75  E-value=0.59  Score=44.61  Aligned_cols=152  Identities=9%  Similarity=0.052  Sum_probs=82.2

Q ss_pred             EEEEeCC--CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816          244 TCVKWGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY  321 (500)
Q Consensus       244 ~~~~~~~--~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (500)
                      ..+++++  ++.|+.+...+.|+.+|+..+....... .......++++++.                            
T Consensus       140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G----------------------------  190 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEA----------------------------  190 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTS----------------------------
T ss_pred             CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCC----------------------------
Confidence            4567775  4677777666889999987765433322 33334455555432                            


Q ss_pred             hhhcCCCCcEE-EEeeCCC----eEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceE
Q 010816          322 NKIKGNAPERL-VSGSDDF----TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFV  395 (500)
Q Consensus       322 ~~~~~~~~~~~-~s~s~d~----~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~  395 (500)
                              ..+ ++...++    .+...+..........+. .......++++| +|.++++-..++.|+.++..++...
T Consensus       191 --------~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~  261 (430)
T 3tc9_A          191 --------DSMIITNDQNNNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT  261 (430)
T ss_dssp             --------SEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             --------CEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence                    222 2222111    233333221111111111 123356788999 7777777667889999998766542


Q ss_pred             EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCCcEEEEECC
Q 010816          396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDSTLKVWDIR  459 (500)
Q Consensus       396 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd~~  459 (500)
                      ........                          .....++++|+|++|+.+ ...+.|..++..
T Consensus       262 ~~~~~~~~--------------------------~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          262 PLFTIQDS--------------------------GWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEECSSS--------------------------SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEcCCC--------------------------CcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            21111000                          011234789999955554 456788887754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.64  E-value=1.2  Score=40.25  Aligned_cols=152  Identities=7%  Similarity=0.092  Sum_probs=86.1

Q ss_pred             EEEEeeeeecCCCCceEEEEe-CCCcEEEEECCCCeEEE-EecC----c--cccEEEEEe---CCCCeEEEEeC------
Q 010816          197 TGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVI-CLSG----H--TLAVTCVKW---GGDGVIYTGSQ------  259 (500)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~~~-~~~~----h--~~~v~~~~~---~~~~~l~t~~~------  259 (500)
                      .++.|.+.    . .+|..++ ..++|..||...+.... .+.+    .  ...+..+.|   .+++.|+....      
T Consensus        16 E~~~wd~~----~-g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           16 EDTIYDRT----R-QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             SCEEEETT----T-TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             cCccCcCC----C-CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            45666541    2 3455555 78999999987554332 2322    1  123578889   57776655332      


Q ss_pred             --------CCeEEEEeCC---CCeeEEEeecC-------------CceEEEEEecCcceeeeccccCCCCCCCCHHHHHH
Q 010816          260 --------DCTIKVWETT---QGKLIRELKGH-------------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK  315 (500)
Q Consensus       260 --------dg~i~lwd~~---~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (500)
                              ++.|..||+.   +++.+....-.             ......+++.++                       
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~-----------------------  147 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD-----------------------  147 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT-----------------------
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC-----------------------
Confidence                    6779999998   77665443210             012344444443                       


Q ss_pred             HHHHhhhhhcCCCCcEEEEeeCC-CeEEEEcCCCCCCCceee------ecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816          316 AALERYNKIKGNAPERLVSGSDD-FTMFLWEPAVSKQPKTRM------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWN  388 (500)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~s~s~d-~~v~~wd~~~~~~~~~~~------~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd  388 (500)
                                   ++..++++.. +.|...++....  ...+      .......+.++++|+|++|++...+|.+..+|
T Consensus       148 -------------GnaYVt~s~~~~~I~rV~pdG~~--~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD  212 (334)
T 2p9w_A          148 -------------GNSYVAFALGMPAIARVSADGKT--VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD  212 (334)
T ss_dssp             -------------SCEEEEEEESSCEEEEECTTSCC--EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred             -------------CCEEEeCCCCCCeEEEEeCCCCE--EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence                         2333444444 444444432211  1100      01112356899999998888776699999999


Q ss_pred             CCC
Q 010816          389 GTT  391 (500)
Q Consensus       389 ~~~  391 (500)
                      +.+
T Consensus       213 ~~~  215 (334)
T 2p9w_A          213 VSK  215 (334)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            874

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.60  E-value=2.5  Score=43.65  Aligned_cols=231  Identities=11%  Similarity=0.005  Sum_probs=120.6

Q ss_pred             CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCc---ccccccCcccceEEEEeee
Q 010816          128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKP---SGNPLSGHKKWITGISWEP  203 (500)
Q Consensus       128 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~  203 (500)
                      ....|+..++......... .....+..|+|.+....|+ +-...+.|+.+++.....   ....+........++++.+
T Consensus       402 n~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             cccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence            3456787787665433333 3345678899998655554 545567898888764211   1111111122234454433


Q ss_pred             eecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC-CeEEEEeCC--CeEEEEeCCCCeeEEEeecC
Q 010816          204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQD--CTIKVWETTQGKLIRELKGH  280 (500)
Q Consensus       204 ~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~d--g~i~lwd~~~~~~~~~~~~~  280 (500)
                      .    ....+++-...+.|.+.++........+.........|++.+. +.|+.....  +.|...++........+...
T Consensus       481 ~----~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~  556 (791)
T 3m0c_C          481 I----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  556 (791)
T ss_dssp             T----TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred             c----CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC
Confidence            1    2245666677788988888755433333333344667888764 667666532  67888887543332222323


Q ss_pred             CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec--
Q 010816          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG--  358 (500)
Q Consensus       281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~--  358 (500)
                      ..+-..|++.+..                                   +...++-.....|...++.... .......  
T Consensus       557 l~~P~GLavD~~~-----------------------------------~~LYwaD~~~~~I~~~d~dG~~-~~~v~~~~~  600 (791)
T 3m0c_C          557 IQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGN-RKTILEDEK  600 (791)
T ss_dssp             CSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCS-CEEEEECTT
T ss_pred             CCCceEEEEecCC-----------------------------------CeEEEEeCCCCcEEEEecCCCc-eEEEecCCC
Confidence            3345555555321                                   1122333344566666654322 2222222  


Q ss_pred             ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816          359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (500)
Q Consensus       359 h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~  400 (500)
                      .-.....|++.. +.++++-...+.|...|..+|+.+.++..
T Consensus       601 ~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~~  641 (791)
T 3m0c_C          601 RLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAE  641 (791)
T ss_dssp             TTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             ccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence            112344666632 34445555567888888878876655543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.30  E-value=2.2  Score=41.15  Aligned_cols=153  Identities=13%  Similarity=0.119  Sum_probs=85.7

Q ss_pred             cEEEEEEcCC-CCeEEEE-eCCCcEEEEeCCCCceeEEecC---CCCCEEEEEE-------cCCCCEEEEEeCCC-----
Q 010816          110 AVLSVAFSPD-GRQLASG-SGDTTVRLWDLNTQTPMFKCTG---HKNWVLCIAW-------SADGKHLVSGSKAG-----  172 (500)
Q Consensus       110 ~V~~~~~sp~-~~~lat~-~~d~~i~iwd~~~~~~~~~~~~---h~~~v~~v~~-------s~~~~~l~s~~~d~-----  172 (500)
                      .-..|+|+|. ...|..+ ...+.|++.|.+++........   .......++|       +++|+.|+.+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4668999993 4444444 4456788889887655433322   1235889999       99999777666543     


Q ss_pred             --eEEEEeCCC-CCccc----ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-------CCeE------
Q 010816          173 --ELQCWDPQT-GKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LRKC------  232 (500)
Q Consensus       173 --~i~~wd~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~-------~~~~------  232 (500)
                        .|.+.+... |....    ..+... ..-.+++..|    .....+++-..++.|..+|+.       ++..      
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp----~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHP----INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECT----TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcC----CCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence              255665433 22210    011100 0112222222    123456666677889999986       4432      


Q ss_pred             --------EEEecCccccEEEEEeCCCCe-EEEE-eCCCeEEEEeC
Q 010816          233 --------VICLSGHTLAVTCVKWGGDGV-IYTG-SQDCTIKVWET  268 (500)
Q Consensus       233 --------~~~~~~h~~~v~~~~~~~~~~-l~t~-~~dg~i~lwd~  268 (500)
                              +... +....-..++|++++. |+.+ +..+.|+.++.
T Consensus       295 ~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          295 NNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             GCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence                    1112 2223346789998874 4444 46678888553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.07  E-value=1.4  Score=41.22  Aligned_cols=125  Identities=12%  Similarity=0.081  Sum_probs=71.0

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC-
Q 010816          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD-  440 (500)
Q Consensus       362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-  440 (500)
                      .+..+..||+|.+||..+. ..|.|-.+..+.....-.+-.+++..-.+      ....  . ....+..+..+-|+|- 
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty------~l~~--~-~~~~~s~I~qVlWHPl~  136 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHY------SIDE--E-EVGPKSSIKKVLFHPKS  136 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEE------EGGG--C-C--CCCCEEEEEECTTB
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEE------EcCC--c-ccCCCCceeEEEecccc
Confidence            4678999999999998855 47888887643210000000011110000      0000  0 0001122344467775 


Q ss_pred             --CCEEEEEECCCcEEEEECCCcc--cc---c-----cccCcccCEEEEEEcCCCCEEEEEe--CCCcEE
Q 010816          441 --SRLLLSGSKDSTLKVWDIRTQK--LK---Q-----DLPGHADEVFAVDWSPDGEKVASGG--KDRVLK  496 (500)
Q Consensus       441 --~~~l~s~s~d~~v~iwd~~~~~--~~---~-----~~~~h~~~V~~l~~s~dg~~l~s~~--~D~~v~  496 (500)
                        +..|++-..|+.||+||+....  ..   +     .+......|.+++|++++-.|...+  ..|-|+
T Consensus       137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          137 YRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             GGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred             CCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence              5689999999999999997521  11   0     1122336789999999888777755  667664

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.03  E-value=2  Score=39.16  Aligned_cols=115  Identities=17%  Similarity=0.142  Sum_probs=68.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEE-eCCCcEEEEECCCCeEEEEecC---
Q 010816          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSG---  238 (500)
Q Consensus       163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~-s~dg~v~iwd~~~~~~~~~~~~---  238 (500)
                      .+++.++.||.|.-.|.++|+..-........++....- +. ...+...++.. +.||.+..++..++.....+.-   
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~-~~-~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQE-PS-RLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCC-SC-TTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecC-Cc-cccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            478889999999999999887543221111111111110 00 00122333333 6899999999888754433221   


Q ss_pred             -ccccEEE---EEe------CCCCeEEEEeCCCeEEEEeCCCCeeEEEeec
Q 010816          239 -HTLAVTC---VKW------GGDGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (500)
Q Consensus       239 -h~~~v~~---~~~------~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~  279 (500)
                       ...++..   ...      +.++.+++|+.+|.+.-.|..+|+.+..+..
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence             1112221   000      1467899999999999999999999887753

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.97  E-value=3.4  Score=41.48  Aligned_cols=163  Identities=9%  Similarity=-0.018  Sum_probs=92.0

Q ss_pred             cEEEEEEcCCCCeEEEE-eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCccc
Q 010816          110 AVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPSG  186 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~  186 (500)
                      ....+++++.+..|..+ ...+.|.+.++............-.....+++.|....|.-...  .+.|...++..... .
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~  159 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-T  159 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-E
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-E
Confidence            45678898876666544 45678999998765433223233345789999986555555442  46777777653321 1


Q ss_pred             ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEE
Q 010816          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW  266 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lw  266 (500)
                      .... .-..-.++++.+.    ..+.+++-...+.|...|+..... ..+......-..+++..+..+++-...+.|...
T Consensus       160 ~l~~-~~~~P~GlalD~~----~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~  233 (628)
T 4a0p_A          160 TLVP-NVGRANGLTIDYA----KRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERA  233 (628)
T ss_dssp             EEEC-SCSSEEEEEEETT----TTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEEEEETTTTEEEEE
T ss_pred             EEEC-CCCCcceEEEccc----cCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEEEecCCCCEEEEE
Confidence            1111 1223445555431    223455556667888888754322 122211122235555554444444457889999


Q ss_pred             eCCCCeeEEEeec
Q 010816          267 ETTQGKLIRELKG  279 (500)
Q Consensus       267 d~~~~~~~~~~~~  279 (500)
                      |..+|+....+..
T Consensus       234 dk~tg~~~~~l~~  246 (628)
T 4a0p_A          234 NKTSGQNRTIIQG  246 (628)
T ss_dssp             ETTTCCSCEEEEC
T ss_pred             ECCCCCceEEEec
Confidence            9877766555543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.86  E-value=3.6  Score=41.23  Aligned_cols=231  Identities=10%  Similarity=-0.007  Sum_probs=110.1

Q ss_pred             CCCcEEEEeCCCCc-eeEEecCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCcccccccCcccceEEEEeeeee
Q 010816          128 GDTTVRLWDLNTQT-PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH  205 (500)
Q Consensus       128 ~d~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~  205 (500)
                      ....|+.-++.... ........-..+..++|++.+..|+-+. ..+.|..+++.........+...-....++++.+. 
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~-   94 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL-   94 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT-
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec-
Confidence            34567888876542 1111222344578899998766666544 46788888886542111112211123455555432 


Q ss_pred             cCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC--CCeEEEEeCCCCeeEEEe-ecCC
Q 010816          206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ--DCTIKVWETTQGKLIREL-KGHG  281 (500)
Q Consensus       206 ~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~--dg~i~lwd~~~~~~~~~~-~~~~  281 (500)
                         ....+++-...+.|.+.++............-..-..+++.+ ++.|+....  .+.|...++. |.....+ ....
T Consensus        95 ---~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~  170 (619)
T 3s94_A           95 ---GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEI  170 (619)
T ss_dssp             ---TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSC
T ss_pred             ---CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCC
Confidence               223556666678888888865433222222222334566765 366665553  3456555553 2222222 2222


Q ss_pred             ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccC
Q 010816          282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ  361 (500)
Q Consensus       282 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~  361 (500)
                      .+-..+++++..                                   ....++-...+.|...|....... ....+...
T Consensus       171 ~~P~Glald~~~-----------------------------------~~LY~aD~~~~~I~~~~~dG~~~~-~~~~~~~~  214 (619)
T 3s94_A          171 YWPNGLTLDYEE-----------------------------------QKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLP  214 (619)
T ss_dssp             SSEEEEEEETTT-----------------------------------TEEEEEETTTCCEEEESSSCCEEC---------
T ss_pred             CCCcEEEEEccC-----------------------------------CEEEEEeCCCCeEEEecCCCCccE-EEEeCCCC
Confidence            333445544321                                   112233334456666665422111 11111111


Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG  400 (500)
Q Consensus       362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~  400 (500)
                      ....|++..+ .++.+-...+.|...|..+|+....+..
T Consensus       215 ~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~  252 (619)
T 3s94_A          215 HPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHS  252 (619)
T ss_dssp             -CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCS
T ss_pred             CceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEec
Confidence            1235666655 4445555677899999888876555543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.80  E-value=0.11  Score=53.06  Aligned_cols=164  Identities=13%  Similarity=-0.033  Sum_probs=90.3

Q ss_pred             EEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC-C-CeEEEEeCCCCCcccc
Q 010816          111 VLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-A-GELQCWDPQTGKPSGN  187 (500)
Q Consensus       111 V~~~~~sp~~~~l-at~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d-~~i~~wd~~~~~~~~~  187 (500)
                      ...|++.+.+..| ++-...+.|.+.++.+......+.........+++.|.+.+|+.+.. . +.|...++.... ...
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~  533 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYS  533 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeE
Confidence            4567888655444 44456788999998765433333222234567888886655554432 2 677777664321 111


Q ss_pred             cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC--ccccEEEEEeCCCCeEEEEeCCCeEEE
Q 010816          188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLAVTCVKWGGDGVIYTGSQDCTIKV  265 (500)
Q Consensus       188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~l~t~~~dg~i~l  265 (500)
                      .....-..-.+++|.|.    ....+++-+..+.|..+|+........+..  ....-..+++..+.++++....+.|..
T Consensus       534 l~~~~l~~PnGlavd~~----~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~  609 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLL----SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFS  609 (699)
T ss_dssp             ESCSSCSSCCCEEECTT----TCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEE
T ss_pred             EEeCCCCCccEEEEecc----CCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEE
Confidence            11111123345666542    234556666677888888854322222211  111112334445555666666788999


Q ss_pred             EeCCCCeeEEEeec
Q 010816          266 WETTQGKLIRELKG  279 (500)
Q Consensus       266 wd~~~~~~~~~~~~  279 (500)
                      +|..+|+.+..+..
T Consensus       610 ~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          610 ANRLTGSDVNLLAE  623 (699)
T ss_dssp             EETTTEEEEECCCT
T ss_pred             EEccCCCceEEeec
Confidence            99888877766543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.41  E-value=3.4  Score=38.85  Aligned_cols=180  Identities=12%  Similarity=-0.048  Sum_probs=93.2

Q ss_pred             CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC----eEEEEecCccccEEEE
Q 010816          171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR----KCVICLSGHTLAVTCV  246 (500)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~----~~~~~~~~h~~~v~~~  246 (500)
                      ...|+..++.......  +......+.+++|.+.    ....+.+-...+.|+.+++...    .....+.........+
T Consensus        91 ~~~I~~i~l~~~~~~~--~~~~~~~~~~l~~d~~----~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl  164 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTS--LIPNLRNVVALDTEVA----SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL  164 (400)
T ss_dssp             TTEEEEECTTSCSCEE--EECSCSCEEEEEEETT----TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEE
T ss_pred             cceeEEEccCCcceeE--eccccCcceEEeeeec----cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccE
Confidence            4678888876553321  1222345667887652    2335555556678888887642    1222222222334555


Q ss_pred             EeCC-CCeE-EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816          247 KWGG-DGVI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (500)
Q Consensus       247 ~~~~-~~~l-~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (500)
                      ++.. .+.| ++-...+.|.+.++........+.........+++.+..                               
T Consensus       165 avD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~-------------------------------  213 (400)
T 3p5b_L          165 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-------------------------------  213 (400)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTT-------------------------------
T ss_pred             EEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEeccc-------------------------------
Confidence            6553 3444 444567788888876543333333233334555555421                               


Q ss_pred             cCCCCcEEEEe-eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCC
Q 010816          325 KGNAPERLVSG-SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTG  392 (500)
Q Consensus       325 ~~~~~~~~~s~-s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~  392 (500)
                          +..+++- +..+.|...++.... ........-...+.|+++|++..|..+ +..+.|..+|+...
T Consensus       214 ----g~ly~td~~~~~~I~~~~~dG~~-~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          214 ----GFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             ----TEEEEEECSSSCCEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ----CeEEEEeCCCCCEEEEEeCCCCc-cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence                1112222 123456666543221 111222233567899999877666555 45678999998654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.12  E-value=3.5  Score=37.91  Aligned_cols=58  Identities=14%  Similarity=0.160  Sum_probs=36.7

Q ss_pred             eeEEcCCCCEEEEEE-CCCcEEEEECCC-cccc--ccccCcccCEEEEEEcC-CCCEEEEEeCC
Q 010816          434 LYSWSADSRLLLSGS-KDSTLKVWDIRT-QKLK--QDLPGHADEVFAVDWSP-DGEKVASGGKD  492 (500)
Q Consensus       434 ~~~~s~~~~~l~s~s-~d~~v~iwd~~~-~~~~--~~~~~h~~~V~~l~~s~-dg~~l~s~~~D  492 (500)
                      .++||||++.|+.+. ..+.|..|++.. +++.  +.+. ..+..-.++..+ +|+..+++..+
T Consensus       225 Gia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          225 GINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred             cceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence            357899998877765 568899999863 3221  1221 123345677888 58877766543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.10  E-value=6.3  Score=40.75  Aligned_cols=181  Identities=12%  Similarity=-0.051  Sum_probs=89.1

Q ss_pred             CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC----eEEEEecCccccEEEE
Q 010816          171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR----KCVICLSGHTLAVTCV  246 (500)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~----~~~~~~~~h~~~v~~~  246 (500)
                      ...|+..++.......  +......+.++.|.+.    ....+++-...+.|+.+++...    .....+.........+
T Consensus       403 ~~~Ir~i~l~~~~~~~--l~~~~~~~~gl~~d~~----~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL  476 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTS--LIPNLRNVVALDTEVA----SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL  476 (791)
T ss_dssp             BSSEEEECTTSCCCEE--EECSCSSEEEEEEETT----TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             ccceeEeeccCCccee--eecCCCceEEEeeccc----CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence            4567777765443221  1222334566666542    2345566666677888887642    1122222122223344


Q ss_pred             EeCC--CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816          247 KWGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (500)
Q Consensus       247 ~~~~--~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (500)
                      ++..  ..++++-...+.|.+.++........+.........|++.+..                               
T Consensus       477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~-------------------------------  525 (791)
T 3m0c_C          477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-------------------------------  525 (791)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT-------------------------------
T ss_pred             eeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCC-------------------------------
Confidence            5443  3344555567889998876443322222233334566665431                               


Q ss_pred             cCCCCcEEEEeeC-CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCc
Q 010816          325 KGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGK  393 (500)
Q Consensus       325 ~~~~~~~~~s~s~-d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~  393 (500)
                          +..+++-.. .+.|...++... .........-...+.|++++.+..|..+ ...+.|...++....
T Consensus       526 ----g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          526 ----GFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             ----TEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ----CCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence                111222212 245555554322 1111222233568899999876655554 445678888886543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=93.97  E-value=5.7  Score=39.86  Aligned_cols=181  Identities=9%  Similarity=-0.074  Sum_probs=91.3

Q ss_pred             CCCeEEEEeCCCCCcccc-cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEe
Q 010816          170 KAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW  248 (500)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~  248 (500)
                      ..+.|+..++.+...... ++.+ -....++.|.+.    ....+.+-..++.|+.+++........+.........+++
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~----~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAv   87 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTG-VKEASALDFDVT----DNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAV   87 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCS-CSCEEEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred             eCCcEEEEECCCCCcceEEEcCC-CCceEEEEEECC----CCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEE
Confidence            456788888875432211 1222 234567777652    2345666667788888887654322222211112233444


Q ss_pred             C--CCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816          249 G--GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (500)
Q Consensus       249 ~--~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (500)
                      .  ....+++-...+.|.+.++........+......-..+++.|..                                 
T Consensus        88 D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~---------------------------------  134 (628)
T 4a0p_A           88 DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE---------------------------------  134 (628)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT---------------------------------
T ss_pred             EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC---------------------------------
Confidence            3  33344455556788888875432211121222223455555421                                 


Q ss_pred             CCCcEEEEe-eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCC
Q 010816          327 NAPERLVSG-SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTG  392 (500)
Q Consensus       327 ~~~~~~~s~-s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~  392 (500)
                        +..+++- +..+.|...++....  ...+...-...+.|+++++++.|..+ ...+.|...|+...
T Consensus       135 --G~lY~tD~g~~~~I~r~~~dG~~--~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          135 --GFMYWTEWGGKPKIDRAAMDGSE--RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             --TEEEEEECSSSCEEEEEETTSCS--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             --CeEEEeCCCCCCEEEEEeCCCCc--eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence              1112221 123455555543221  12222334568899999976655554 45678999998654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.69  E-value=3.3  Score=36.89  Aligned_cols=51  Identities=24%  Similarity=0.299  Sum_probs=28.9

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCccccc--cccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          440 DSRLLLSGSKD-----STLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       440 ~~~~l~s~s~d-----~~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      ++++++.|+.+     ..+.+||..+.+...  .++........+.+  +++.++.||.+
T Consensus       206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~  263 (301)
T 2vpj_A          206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYD  263 (301)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcC
Confidence            56777777764     468999998765432  22221111122333  56677777765

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.62  E-value=4.9  Score=37.86  Aligned_cols=159  Identities=11%  Similarity=0.194  Sum_probs=95.7

Q ss_pred             CCCeEEEEcCCCCCCCceeeeccc----CcEEEEEECCCCCEEEEEeC-------CCcEEEEeCCCCceEEEEeCCcccE
Q 010816          337 DDFTMFLWEPAVSKQPKTRMTGHQ----QLVNHVYFSPDGQWVASASF-------DKSIKLWNGTTGKFVAVFRGHVGPV  405 (500)
Q Consensus       337 ~d~~v~~wd~~~~~~~~~~~~~h~----~~v~~l~~sp~g~~lasgs~-------Dg~i~lwd~~~~~~~~~~~~h~~~v  405 (500)
                      .+..|+-|++.....|...+..|.    ..|..-..+++.++++..+-       .|.+.+|..+.+. -..++||.+.-
T Consensus       123 T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F  201 (494)
T 1bpo_A          123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASF  201 (494)
T ss_dssp             CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEE
T ss_pred             cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeee
Confidence            356799999876666766665554    34777788999998875432       4678999987653 23456666555


Q ss_pred             EEEEee------eeeeecCCC---Cceeeeecc------------------------ccceeeEEcCCCCEEEEEECCCc
Q 010816          406 YQIRFE------LIYCFRYPS---NFYCVVDMS------------------------CCMSLYSWSADSRLLLSGSKDST  452 (500)
Q Consensus       406 ~~~~~~------~~~~~~~~~---~~~~~~~~~------------------------~~~~~~~~s~~~~~l~s~s~d~~  452 (500)
                      .+++.+      .+.|+....   .....++..                        .+......|+.-..+..-..-|.
T Consensus       202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~  281 (494)
T 1bpo_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY  281 (494)
T ss_dssp             EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE
T ss_pred             EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce
Confidence            444332      111211110   011111110                        01111223555667788888999


Q ss_pred             EEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816          453 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK  496 (500)
Q Consensus       453 v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~  496 (500)
                      +++||++++.++..-+--.+.|+..+-+....-++.....|.|.
T Consensus       282 i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl  325 (494)
T 1bpo_A          282 IHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  325 (494)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred             EEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence            99999999998776555556777666666656666666666653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.05  E-value=4.6  Score=35.90  Aligned_cols=135  Identities=15%  Similarity=0.200  Sum_probs=63.3

Q ss_pred             CcEEEEeCCCCceeE--EecCCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCC---cccc-cccCcccceEE
Q 010816          130 TTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA-----GELQCWDPQTGK---PSGN-PLSGHKKWITG  198 (500)
Q Consensus       130 ~~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d-----~~i~~wd~~~~~---~~~~-~~~~~~~~v~~  198 (500)
                      ..+.+||..+.+-..  .+........++.  .++++++.|+.+     ..+.+||+.+.+   -... .+.........
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence            367888877653211  1111111112222  256677777765     468899988765   2111 11111111111


Q ss_pred             EEeeeeecCCCCceEEEEeCC-----CcEEEEECCCCeEEE--EecCccccEEEEEeCCCCeEEEEeCC-----CeEEEE
Q 010816          199 ISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDGVIYTGSQD-----CTIKVW  266 (500)
Q Consensus       199 ~~~~~~~~~~~~~~~~s~s~d-----g~v~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~l~t~~~d-----g~i~lw  266 (500)
                      +..       +...++.|+.+     ..+.+||+.+.+-..  .+......-.++.+ .+..++.|+.+     ..+..|
T Consensus       109 ~~~-------~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~  180 (301)
T 2vpj_A          109 TTL-------GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKY  180 (301)
T ss_dssp             EEE-------TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEE
T ss_pred             EEE-------CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEE
Confidence            111       23466777654     357888987764322  11111111112222 23345556654     457888


Q ss_pred             eCCCCeeE
Q 010816          267 ETTQGKLI  274 (500)
Q Consensus       267 d~~~~~~~  274 (500)
                      |..+.+..
T Consensus       181 d~~~~~W~  188 (301)
T 2vpj_A          181 DPHTGHWT  188 (301)
T ss_dssp             ETTTTEEE
T ss_pred             eCCCCcEE
Confidence            88776543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.00  E-value=6.8  Score=37.78  Aligned_cols=154  Identities=7%  Similarity=0.105  Sum_probs=81.1

Q ss_pred             EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc---cccEEEEEe-------CCCCe-EEEEeCCC----
Q 010816          197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH---TLAVTCVKW-------GGDGV-IYTGSQDC----  261 (500)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h---~~~v~~~~~-------~~~~~-l~t~~~dg----  261 (500)
                      ..+++.|..   ....+++....+.|++.|+..+.........   ......++|       ++++. |+.+...+    
T Consensus       142 ~~la~dp~~---~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          142 GRLAFDPLN---KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEETTE---EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CEEEEccCC---CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            456666520   1234555555567888998887665444322   234778899       87764 66665543    


Q ss_pred             ---eEEEEeCCC-CeeE-----EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816          262 ---TIKVWETTQ-GKLI-----RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (500)
Q Consensus       262 ---~i~lwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (500)
                         .|.+++... |...     +.+.... ....++++++                                   .+..+
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-----------------------------------~g~LY  262 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-----------------------------------NGELY  262 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-----------------------------------TCCEE
T ss_pred             cCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-----------------------------------CCeEE
Confidence               255555332 1211     1111000 0111222221                                   13455


Q ss_pred             EEeeCCCeEEEEcCC-------CCCC-----C-----ceee--ecccCcEEEEEECCCCCEE-EEEeCCCcEEEEeC
Q 010816          333 VSGSDDFTMFLWEPA-------VSKQ-----P-----KTRM--TGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNG  389 (500)
Q Consensus       333 ~s~s~d~~v~~wd~~-------~~~~-----~-----~~~~--~~h~~~v~~l~~sp~g~~l-asgs~Dg~i~lwd~  389 (500)
                      ++-..++.|+.+|+.       ....     +     ...+  .+...+...++|+|+|++| ++-+..+.|+.++.
T Consensus       263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            666677889999875       2222     0     0111  1223456789999999954 44456678888554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.98  E-value=2.1  Score=36.17  Aligned_cols=67  Identities=13%  Similarity=0.100  Sum_probs=42.1

Q ss_pred             ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce------eEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP------MFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~------~~~~--~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      ..+..++|+|+|.+-|.  .+|.+.-.+..+...      -..+  .+... ..++.|.|+|.+.++  .||.|.-++.-
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            36779999999997776  566544444432111      0111  12222 578899999987777  56999888763

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.40  E-value=8.4  Score=42.22  Aligned_cols=157  Identities=11%  Similarity=0.194  Sum_probs=79.6

Q ss_pred             CCeEEEEcCCCCCCCceeeecc----cCcEEEEEECCCCCEEEEEe-------CCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGH----QQLVNHVYFSPDGQWVASAS-------FDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h----~~~v~~l~~sp~g~~lasgs-------~Dg~i~lwd~~~~~~~~~~~~h~~~v~  406 (500)
                      +..|+.|++.....|...+..|    ...|..-..+++.++++..|       -.|.+.+|..+.+.. ..+.||.+.-.
T Consensus       124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~  202 (1630)
T 1xi4_A          124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFA  202 (1630)
T ss_pred             CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhh
Confidence            4579999986555555544444    24466777788888887543       347889998765421 11223322211


Q ss_pred             EEEee------eeeeecCC---CCceeeeec------------------------cccceeeEEcCCCCEEEEEECCCcE
Q 010816          407 QIRFE------LIYCFRYP---SNFYCVVDM------------------------SCCMSLYSWSADSRLLLSGSKDSTL  453 (500)
Q Consensus       407 ~~~~~------~~~~~~~~---~~~~~~~~~------------------------~~~~~~~~~s~~~~~l~s~s~d~~v  453 (500)
                      .++.+      .+.|+...   .....++..                        ..+......|+.-..+..-..-|.|
T Consensus       203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~  282 (1630)
T 1xi4_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  282 (1630)
T ss_pred             eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceE
Confidence            11110      00010000   000000000                        0011112235555677778888999


Q ss_pred             EEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 010816          454 KVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL  495 (500)
Q Consensus       454 ~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v  495 (500)
                      ++||+.++.++..-+-..+.|+..+-++...-++.....|.|
T Consensus       283 ~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~v  324 (1630)
T 1xi4_A          283 HLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  324 (1630)
T ss_pred             EEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceE
Confidence            999999998876544344555544444333334444444433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.76  E-value=1.9  Score=36.40  Aligned_cols=109  Identities=11%  Similarity=0.067  Sum_probs=59.2

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC
Q 010816          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS  441 (500)
Q Consensus       362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  441 (500)
                      .+..++|+|+|.+.|.  .+|.++-.+..++.... +.+....|-+.-                   -.....+.|.|+|
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~-W~~s~t~IG~~G-------------------w~~F~a~~fD~~G   99 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDN-WMGRAKKIGNGG-------------------WNQFQFLFFDPNG   99 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC-HHHHCEEEECSC-------------------GGGCSEEEECTTS
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCccc-ccccccEecccc-------------------cccceEEEECCCC
Confidence            4568999999997777  67776666654421100 000000000000                   0001223578999


Q ss_pred             CEEEEEECCCcEEEEECCCcc---cccc---c-cCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816          442 RLLLSGSKDSTLKVWDIRTQK---LKQD---L-PGHADEVFAVDWSPDGEKVASGGKDRVLK  496 (500)
Q Consensus       442 ~~l~s~s~d~~v~iwd~~~~~---~~~~---~-~~h~~~V~~l~~s~dg~~l~s~~~D~~v~  496 (500)
                      .+.++  .||.|+-++-.+..   .+..   + .+-=..+..|.|.|+|..-+..  |+.++
T Consensus       100 ~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          100 YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            88887  66988877753311   1111   0 1111467899999999766555  77653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=91.70  E-value=3.3  Score=38.13  Aligned_cols=103  Identities=13%  Similarity=0.214  Sum_probs=56.5

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD  440 (500)
Q Consensus       361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  440 (500)
                      .....++|.|+|+++++ ..+|.|++++  +++... +.       .+          +    ...........++++|+
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~-~~-------~~----------~----v~~~g~~~p~gia~~pd   85 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLST-YA-------EL----------S----VYHRGESGLLGLALHPR   85 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEE-EE-------EC----------C----CCCSTTCSEEEEEECTT
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccE-ee-------cc----------e----EeecCCCCceeEEECCC
Confidence            34678999999996655 5669999998  443211 10       00          0    00001112334577887


Q ss_pred             ---CCEEEEEEC-C-----CcEEEEECCCcc------cccccc-----CcccCEEEEEEcCCCCEEEEEe
Q 010816          441 ---SRLLLSGSK-D-----STLKVWDIRTQK------LKQDLP-----GHADEVFAVDWSPDGEKVASGG  490 (500)
Q Consensus       441 ---~~~l~s~s~-d-----~~v~iwd~~~~~------~~~~~~-----~h~~~V~~l~~s~dg~~l~s~~  490 (500)
                         +..|+.+.. +     +.|..|+.....      ++..++     .|.  ...++|.|||...++.+
T Consensus        86 f~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           86 FPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEECC
T ss_pred             CCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEEEC
Confidence               444444432 2     567778766431      112232     133  25789999997666644

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.05  E-value=8  Score=34.38  Aligned_cols=143  Identities=10%  Similarity=0.114  Sum_probs=67.5

Q ss_pred             eEEEEeC--CCcEEEEeCCCCceeE--EecCCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCCcccc-cccCc
Q 010816          122 QLASGSG--DTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDPQTGKPSGN-PLSGH  192 (500)
Q Consensus       122 ~lat~~~--d~~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d----~~i~~wd~~~~~~~~~-~~~~~  192 (500)
                      +++.|+.  ...+.+||..+.+-..  .+......-.++.+  ++.+++.|+.+    ..+.+||+.+.+-... .+...
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            4555554  3578888887653211  11111111122222  56677777755    5688889877642111 01100


Q ss_pred             ccceEEEEeeeeecCCCCceEEEEeCC------CcEEEEECCCCeEEEE--ecCccccEEEEEeCCCCeEEEEeC-----
Q 010816          193 KKWITGISWEPVHLNAPCRRFVSASKD------GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQ-----  259 (500)
Q Consensus       193 ~~~v~~~~~~~~~~~~~~~~~~s~s~d------g~v~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~l~t~~~-----  259 (500)
                      ......+.       .+...++.|+.+      ..+.+||..+.+-...  +......-.++.+ .+..++.|+.     
T Consensus        92 r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~  163 (306)
T 3ii7_A           92 RDSLAACA-------AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNV  163 (306)
T ss_dssp             CBSCEEEE-------ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTT
T ss_pred             ccceeEEE-------ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCC
Confidence            11001111       133467777765      4688899887653221  1111111112222 2233444543     


Q ss_pred             ----CCeEEEEeCCCCeeE
Q 010816          260 ----DCTIKVWETTQGKLI  274 (500)
Q Consensus       260 ----dg~i~lwd~~~~~~~  274 (500)
                          -..+.+||..+.+..
T Consensus       164 ~~~~~~~~~~yd~~~~~W~  182 (306)
T 3ii7_A          164 SGRVLNSCEVYDPATETWT  182 (306)
T ss_dssp             TCEECCCEEEEETTTTEEE
T ss_pred             cccccceEEEeCCCCCeEE
Confidence                345778888776543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.44  E-value=9  Score=35.01  Aligned_cols=34  Identities=18%  Similarity=0.148  Sum_probs=26.9

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 010816          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF  394 (500)
Q Consensus       361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~  394 (500)
                      ...+.|+|.|||.++++--..|.|++++..+++.
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~   65 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK   65 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence            4568999999999887765589999998766553

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.23  E-value=9.4  Score=33.83  Aligned_cols=52  Identities=23%  Similarity=0.320  Sum_probs=28.9

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCccccc--cccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816          440 DSRLLLSGSKD-----STLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKDR  493 (500)
Q Consensus       440 ~~~~l~s~s~d-----~~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D~  493 (500)
                      ++++++.|+.+     ..+.+||..+.+...  .++.....-..+.+  +++.++.||.++
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~  262 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDG  262 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCC
Confidence            66777777754     368899988765432  22211111122222  566777777654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=89.94  E-value=10  Score=33.72  Aligned_cols=51  Identities=14%  Similarity=0.242  Sum_probs=28.7

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCccccc--cccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          440 DSRLLLSGSKD-----STLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       440 ~~~~l~s~s~d-----~~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      ++++++.|+.+     ..+.+||..+.+...  .++........+.+  +++.++.||.+
T Consensus       200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~  257 (306)
T 3ii7_A          200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQ  257 (306)
T ss_dssp             TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBC
T ss_pred             CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcC
Confidence            56677776653     458899988765432  22222222233333  56777777754

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=89.58  E-value=26  Score=37.99  Aligned_cols=111  Identities=11%  Similarity=0.042  Sum_probs=60.4

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE-EecCCCCCEEEEEEcCC------CCEEEEEeC-CCeEEEEeCCC
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-KCTGHKNWVLCIAWSAD------GKHLVSGSK-AGELQCWDPQT  181 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~v~~s~~------~~~l~s~~~-d~~i~~wd~~~  181 (500)
                      .|...+.+.  .+++.++ .+.+.++++..+.... .-..-...|.|+++.|.      +++++.|.. |++++++++.+
T Consensus       515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            354444432  3555554 5677777776542111 11123567999999763      468999987 99999999875


Q ss_pred             CCcccc-cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC
Q 010816          182 GKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (500)
Q Consensus       182 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~  227 (500)
                      -+.... .+.. .....++.....   .....+..|-.||.+.-+.+
T Consensus       592 l~~~~~~~L~~-~~~p~si~l~~~---~~~~~L~igl~dG~l~~~~~  634 (1158)
T 3ei3_A          592 FELLHKEMLGG-EIIPRSILMTTF---ESSHYLLCALGDGALFYFGL  634 (1158)
T ss_dssp             CCEEEEEECCS-SCCEEEEEEEEE---TTEEEEEEEETTSEEEEEEE
T ss_pred             CCeEEEEECCC-CCCCcEEEEEEe---CCCcEEEEEeCCCeEEEEEE
Confidence            432211 1111 112223322211   11235667778887755443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=88.71  E-value=4.7  Score=37.07  Aligned_cols=31  Identities=13%  Similarity=0.191  Sum_probs=22.9

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (500)
Q Consensus       361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~  393 (500)
                      .....++|.|+|+++++ ..+|.|++++ .+++
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~   59 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK   59 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc
Confidence            34678999999985555 5669999997 3444

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=88.58  E-value=1.8  Score=39.48  Aligned_cols=145  Identities=10%  Similarity=0.027  Sum_probs=79.4

Q ss_pred             CeEEEEeCCCcEEEEeCCCCceeEEecCC-CCCEEEEEEc--C-CCCEEEEE-eCCCeEEEEeCCCCCcccccccC----
Q 010816          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGH-KNWVLCIAWS--A-DGKHLVSG-SKAGELQCWDPQTGKPSGNPLSG----  191 (500)
Q Consensus       121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~s--~-~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~----  191 (500)
                      .+++.++.||.|.-.|.++++.+..+... ..++....-.  + ++..++.. +.||.|..++..+|.... ....    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccce
Confidence            35788899999999999999888776543 1222221100  1 22333333 579999999988774321 1000    


Q ss_pred             cccceEEEEeeeeec----CCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc--c-----cEEEEE---e---CCCCeE
Q 010816          192 HKKWITGISWEPVHL----NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT--L-----AVTCVK---W---GGDGVI  254 (500)
Q Consensus       192 ~~~~v~~~~~~~~~~----~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~--~-----~v~~~~---~---~~~~~l  254 (500)
                      ...++.. .-.|.-.    ......+++|+.+|.+...|+.+|+.+..+....  .     ...|..   +   ..++.+
T Consensus        90 ~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v  168 (339)
T 2be1_A           90 STSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI  168 (339)
T ss_dssp             TTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred             ecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence            0001110 0011100    0134578899999999999999999988875321  1     111111   1   123456


Q ss_pred             EEEeCCCeEEEEe
Q 010816          255 YTGSQDCTIKVWE  267 (500)
Q Consensus       255 ~t~~~dg~i~lwd  267 (500)
                      +.+..+..+...+
T Consensus       169 ~ig~~~y~v~~~~  181 (339)
T 2be1_A          169 VIGKTIFELGIHS  181 (339)
T ss_dssp             EEEEEEEECEECC
T ss_pred             EEecceEEEEEEC
Confidence            6677666666655

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.44  E-value=13  Score=33.12  Aligned_cols=51  Identities=22%  Similarity=0.356  Sum_probs=28.7

Q ss_pred             CCCEEEEEECCC-----cEEEEECCCccccc--cccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          440 DSRLLLSGSKDS-----TLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       440 ~~~~l~s~s~d~-----~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      ++++++.|+.++     .+.+||..+.+...  .++........+.+  +++.++.||.+
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCcc
Confidence            667777777654     58889988765432  22221111222333  55677777764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=88.25  E-value=9.8  Score=36.38  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=24.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (500)
Q Consensus       362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~  393 (500)
                      ..+.|+|.|+|+++++-...+.|++++..+++
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~   59 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGS   59 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCc
Confidence            46789999999988775544578888866554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=87.99  E-value=14  Score=32.74  Aligned_cols=106  Identities=11%  Similarity=0.182  Sum_probs=50.2

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCCccccc-ccCcccceEEEEeeeeecCCCCceEEEEeCCC-----cEEEEECCC
Q 010816          161 DGKHLVSGSKA-----GELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDG-----DARIWDVSL  229 (500)
Q Consensus       161 ~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg-----~v~iwd~~~  229 (500)
                      ++.+++.|+.+     ..+.+||+.+.+-.... +.........+..       +...++.|+.++     .+.+||+.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~d~~~  133 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-------NGLLYAVGGFDGSTGLSSVEAYNIKS  133 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-------TTEEEEEEEECSSCEEEEEEEEETTT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-------CCEEEEEcCCCCCccCceEEEEeCCC
Confidence            56677777755     35788888765421110 1111111111111       234677777553     577888876


Q ss_pred             CeEEEE--ecCccccEEEEEeCCCCeEEEEeCC-------CeEEEEeCCCCeeE
Q 010816          230 RKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQD-------CTIKVWETTQGKLI  274 (500)
Q Consensus       230 ~~~~~~--~~~h~~~v~~~~~~~~~~l~t~~~d-------g~i~lwd~~~~~~~  274 (500)
                      .+-...  +......-.++.+ .+..++.|+.+       ..+..||..+.+..
T Consensus       134 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          134 NEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            643221  1111111112222 23344445532       35778888776543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=87.95  E-value=12  Score=33.37  Aligned_cols=52  Identities=15%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCccccc--cccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816          440 DSRLLLSGSKD-----STLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKDR  493 (500)
Q Consensus       440 ~~~~l~s~s~d-----~~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D~  493 (500)
                      ++++++.|+.+     ..+.+||+.+.+...  .++.....-..+..  +++.++.||.++
T Consensus       215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  273 (308)
T 1zgk_A          215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDG  273 (308)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCC
Confidence            66777777654     568999988765432  22221111122222  566777777543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=87.32  E-value=16  Score=33.44  Aligned_cols=26  Identities=8%  Similarity=0.201  Sum_probs=21.3

Q ss_pred             EEEEEeCCCCe-EEEEeCCCeEEEEeC
Q 010816          243 VTCVKWGGDGV-IYTGSQDCTIKVWET  268 (500)
Q Consensus       243 v~~~~~~~~~~-l~t~~~dg~i~lwd~  268 (500)
                      -..++|.+++. ++.+...|.|++++.
T Consensus        20 P~~i~~~pdG~~l~V~e~~G~i~~~~~   46 (353)
T 2g8s_A           20 PWALAFLPDNHGMLITLRGGELRHWQA   46 (353)
T ss_dssp             EEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred             cEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence            45788999988 888888898888874

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=86.21  E-value=32  Score=35.22  Aligned_cols=113  Identities=12%  Similarity=0.142  Sum_probs=59.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816          150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL  229 (500)
Q Consensus       150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~  229 (500)
                      ...|.++.-..+|. |-.|..+| +..||-.+-+............|.++...      ....+-.|+.+| +..||..+
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d------~~g~lWigT~~G-l~~yd~~~   91 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVII------DNTYLYMGTDNG-ILVYNYRA   91 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEE------TTTEEEEEETTE-EEEEETTT
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEc------CCCcEEEEeCCC-eEEEeCCC
Confidence            45688888777774 44455566 44565322110000001112345554322      123555666555 77889877


Q ss_pred             CeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCee
Q 010816          230 RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL  273 (500)
Q Consensus       230 ~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~  273 (500)
                      .+...........|.++.. .++.|..++.+ -+..+|..+++.
T Consensus        92 ~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~  133 (758)
T 3ott_A           92 DRYEQPETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKL  133 (758)
T ss_dssp             TEECCCSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCE
T ss_pred             CEEECcccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeE
Confidence            6432211111234666654 46778888776 677888776554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=83.82  E-value=26  Score=32.01  Aligned_cols=52  Identities=13%  Similarity=0.142  Sum_probs=31.9

Q ss_pred             CCCCEEEEEECCCcEEEEECCCccc------cccccCcccCEEEEEEcCCCCEEEEEe
Q 010816          439 ADSRLLLSGSKDSTLKVWDIRTQKL------KQDLPGHADEVFAVDWSPDGEKVASGG  490 (500)
Q Consensus       439 ~~~~~l~s~s~d~~v~iwd~~~~~~------~~~~~~h~~~V~~l~~s~dg~~l~s~~  490 (500)
                      .+|.++++.-..+.|...++.....      ...+-.-..++..+++.|||...++..
T Consensus       276 ~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          276 FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            3566666655666777776654321      111212235788999999998777654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=83.66  E-value=24  Score=31.48  Aligned_cols=51  Identities=20%  Similarity=0.458  Sum_probs=27.6

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCccccc--cccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          440 DSRLLLSGSKD-----STLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       440 ~~~~l~s~s~d-----~~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      ++++++.|+.+     ..+.+||..+.+...  .++........+.+  +++.++.||.+
T Consensus       206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~  263 (318)
T 2woz_A          206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFA  263 (318)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCee
Confidence            56777777653     357789988765432  22222222222333  45667777754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=83.53  E-value=23  Score=31.34  Aligned_cols=146  Identities=10%  Similarity=0.095  Sum_probs=66.9

Q ss_pred             CCCeEEEEeC----CCcEEEEeCCCCceeE--EecCCCCCEEEEEEcCCCCEEEEEeC----C-----CeEEEEeCCCCC
Q 010816          119 DGRQLASGSG----DTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSK----A-----GELQCWDPQTGK  183 (500)
Q Consensus       119 ~~~~lat~~~----d~~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~----d-----~~i~~wd~~~~~  183 (500)
                      ++..++.|+.    -..+.+||..+.+-..  .+......-..+.+  ++.+++.|+.    +     ..+.+||+.+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            4555666653    2368888887653211  11110111122222  5666777765    2     357888887654


Q ss_pred             cccc-cccCcccceEEEEeeeeecCCCCceEEEEeCC-----CcEEEEECCCCeEEEE--ecCccccEEEEEeCCCCeEE
Q 010816          184 PSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIY  255 (500)
Q Consensus       184 ~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-----g~v~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~l~  255 (500)
                      -... .+.........+..       +...++.|+.+     ..+.+||..+.+-...  +......-.++.+ .+..++
T Consensus       102 W~~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv  173 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI-------DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYA  173 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE-------TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEE
T ss_pred             EeECCCCCcCccccEEEEE-------CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEE
Confidence            2111 01111111111111       23456666643     3678888877643221  1111111122222 233455


Q ss_pred             EEeCC-----CeEEEEeCCCCeeE
Q 010816          256 TGSQD-----CTIKVWETTQGKLI  274 (500)
Q Consensus       256 t~~~d-----g~i~lwd~~~~~~~  274 (500)
                      .|+.+     ..+..||..+.+..
T Consensus       174 ~GG~~~~~~~~~~~~yd~~~~~W~  197 (308)
T 1zgk_A          174 VGGFDGTNRLNSAECYYPERNEWR  197 (308)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             EeCCCCCCcCceEEEEeCCCCeEe
Confidence            56654     45778888776543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=83.24  E-value=27  Score=31.91  Aligned_cols=59  Identities=12%  Similarity=0.223  Sum_probs=32.6

Q ss_pred             EEEeeCCCeEEEEcCCCCCCCc-eeeecccCcEEEEEECC-CCCEEEEEeCC-CcEEEEeCC
Q 010816          332 LVSGSDDFTMFLWEPAVSKQPK-TRMTGHQQLVNHVYFSP-DGQWVASASFD-KSIKLWNGT  390 (500)
Q Consensus       332 ~~s~s~d~~v~~wd~~~~~~~~-~~~~~h~~~v~~l~~sp-~g~~lasgs~D-g~i~lwd~~  390 (500)
                      .++-+..+.|..|+........ ............+++++ +|++.+++..+ +.|..|+..
T Consensus       236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             EEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            3445556788888765322111 11112234567788998 58877766555 345555544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=81.33  E-value=7  Score=35.88  Aligned_cols=27  Identities=15%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             cEEEEEECCCCC-EEEEEeCCCcEEEEeC
Q 010816          362 LVNHVYFSPDGQ-WVASASFDKSIKLWNG  389 (500)
Q Consensus       362 ~v~~l~~sp~g~-~lasgs~Dg~i~lwd~  389 (500)
                      ....|+|.|+|+ ++++ ...|.|++++.
T Consensus        19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~   46 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLIT-LRGGELRHWQA   46 (353)
T ss_dssp             SEEEEEECSTTCCEEEE-ETTTEEEEEET
T ss_pred             CcEEEEEcCCCCEEEEE-eCCceEEEEeC
Confidence            367899999999 6654 56789999985

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=80.56  E-value=4.8  Score=39.18  Aligned_cols=114  Identities=12%  Similarity=0.076  Sum_probs=61.4

Q ss_pred             cCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceEE--EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816          360 QQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS  436 (500)
Q Consensus       360 ~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (500)
                      ......+.++|||++++.++ .+.++.++|.+......  .+..-...+..                 .....-.....+
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a-----------------e~e~GlGPlHt~  384 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG-----------------EPELGLGPLHTT  384 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE-----------------CCBCCSCEEEEE
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe-----------------eccCCCcccEEE
Confidence            34456789999999887655 58899999987421100  00000000000                 000001112236


Q ss_pred             EcCCCCEEEEEECCCcEEEEECCCc----------cccccccCcccCEEEEE------EcCCCCEEEEEeC
Q 010816          437 WSADSRLLLSGSKDSTLKVWDIRTQ----------KLKQDLPGHADEVFAVD------WSPDGEKVASGGK  491 (500)
Q Consensus       437 ~s~~~~~l~s~s~d~~v~iwd~~~~----------~~~~~~~~h~~~V~~l~------~s~dg~~l~s~~~  491 (500)
                      |.++|.-..+-.-|..|--|++...          ..+.++.-|.. +-.+.      -.|||+||++...
T Consensus       385 Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          385 FDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             ECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEES
T ss_pred             ECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecc
Confidence            7888855556668999999998653          23333333322 11121      2578999988743

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=80.13  E-value=32  Score=30.56  Aligned_cols=137  Identities=12%  Similarity=0.038  Sum_probs=63.7

Q ss_pred             CcEEEEeCCCCceeE-EecCCCCCEEEEEEcCCCCEEEEEeC----C-------CeEEEEeCCCCCcccc-cccCcccce
Q 010816          130 TTVRLWDLNTQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSK----A-------GELQCWDPQTGKPSGN-PLSGHKKWI  196 (500)
Q Consensus       130 ~~i~iwd~~~~~~~~-~~~~h~~~v~~v~~s~~~~~l~s~~~----d-------~~i~~wd~~~~~~~~~-~~~~~~~~v  196 (500)
                      ..+.+||..+++-.. .+..............++++++.|+.    +       ..+..||+.+.+-... .+.......
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~   92 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF   92 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence            568888887765221 12111112222233357777777774    1       1267788876642111 111101000


Q ss_pred             EEEEeeeeecCCCCceEEEEeCC--------CcEEEEECCCCeEEEE--ecCccccEEEEEeCCCCeEEEEeC-C-----
Q 010816          197 TGISWEPVHLNAPCRRFVSASKD--------GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQ-D-----  260 (500)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~s~s~d--------g~v~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~l~t~~~-d-----  260 (500)
                      ..+.       .....++.|+.+        ..+.+||..+.+-...  +......-.++. ..+..++.|+. +     
T Consensus        93 ~~~~-------~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~  164 (315)
T 4asc_A           93 GLGE-------ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCL  164 (315)
T ss_dssp             EEEE-------ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBC
T ss_pred             eEEE-------ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCccc
Confidence            1111       123456666632        4688899877642211  111111111222 22334555665 2     


Q ss_pred             CeEEEEeCCCCeeE
Q 010816          261 CTIKVWETTQGKLI  274 (500)
Q Consensus       261 g~i~lwd~~~~~~~  274 (500)
                      ..+.+||..+.+..
T Consensus       165 ~~~~~yd~~~~~W~  178 (315)
T 4asc_A          165 NKMCVYDPKKFEWK  178 (315)
T ss_dssp             CCEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCeEE
Confidence            46788888776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	500
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-47
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-39
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-41
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-36
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-35
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-24
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-22
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-34
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-33
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-24
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-22
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-14
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-32
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-20
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-29
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-29
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-21
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-28
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-27
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-22
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-27
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-27
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-27
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-20
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-26
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-23
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-24
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-22
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-18
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-15
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-23
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-22
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-21
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-21
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-16
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-21
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-19
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-21
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-18
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-18
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-19
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-17
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-19
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-15
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-18
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-15
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-13
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-10
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	8e-05
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	3e-09
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-06
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-05
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.002
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	3e-05
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	0.001
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  164 bits (415), Expect = 2e-47
 Identities = 78/363 (21%), Positives = 134/363 (36%), Gaps = 51/363 (14%)

Query: 96  PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
           P       ++GH   V  V F P    + S S D T+++WD  T        GH + V  
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64

Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           I++   GK L S                                +   V +       VS
Sbjct: 65  ISFDHSGKLLASC------SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118

Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI 274
           AS+D   ++W+V    CV   +GH   V  V+   DG +I + S D T++VW     +  
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334
            EL+ H H V  ++ + E +  + +     +   S                G     L+S
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKS----------------GKPGPFLLS 222

Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394
           GS D T+ +W+ + +      + GH   V  V F   G+++ S + DK++++W+    + 
Sbjct: 223 GSRDKTIKMWDVS-TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281

Query: 395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK 454
           +     H   V  +                            +   +  +++GS D T+K
Sbjct: 282 MKTLNAHEHFVTSL---------------------------DFHKTAPYVVTGSVDQTVK 314

Query: 455 VWD 457
           VW+
Sbjct: 315 VWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  144 bits (362), Expect = 1e-39
 Identities = 78/368 (21%), Positives = 141/368 (38%), Gaps = 54/368 (14%)

Query: 133 RLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH 192
           + W        +  +GH++ V  + +      +VS S+   ++ WD +TG      L GH
Sbjct: 1   KEWIPRPP-EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT-LKGH 58

Query: 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG 252
              +  IS++                D   ++WD    +C+  + GH   V+ V    +G
Sbjct: 59  TDSVQDISFDHSGKLLASCSA-----DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113

Query: 253 -VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE-YALRTGAFDHTGKQYSSP 310
             I + S+D TIK+WE   G  ++   GH  WV  +  + +   + + + D T + +   
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173

Query: 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370
            +  KA L  +                      W P  S    +  TG            
Sbjct: 174 TKECKAELREH--------------RHVVECISWAPESSYSSISEATGS----ETKKSGK 215

Query: 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSC 430
            G ++ S S DK+IK+W+ +TG  +    GH   V  +                      
Sbjct: 216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV---------------------- 253

Query: 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG 490
                 + +  + +LS + D TL+VWD + ++  + L  H   V ++D+      V +G 
Sbjct: 254 -----LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308

Query: 491 KDRVLKLW 498
            D+ +K+W
Sbjct: 309 VDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.3 bits (238), Expect = 1e-22
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 17/172 (9%)

Query: 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
            W P      K  ++GH+  V  V F P    + SAS D +IK+W+  TG F    +GH 
Sbjct: 2   EWIP--RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59

Query: 403 GPVYQIR---------------FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG 447
             V  I                   ++ F+       +      +S  S   +   ++S 
Sbjct: 60  DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 119

Query: 448 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499
           S+D T+K+W+++T    +   GH + V  V  + DG  +AS   D+ +++W+
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.6 bits (218), Expect = 5e-20
 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
           I      S +         +      G  L SGS D T+++WD++T   +    GH NWV
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
             + + + GK ++S +    L+ WD +  +     L+ H+ ++T + +            
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT-LNAHEHFVTSLDFHKT-----APYV 304

Query: 214 VSASKDGDARIWD 226
           V+ S D   ++W+
Sbjct: 305 VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.9 bits (203), Expect = 4e-18
 Identities = 61/266 (22%), Positives = 90/266 (33%), Gaps = 65/266 (24%)

Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294
           LSGH   VT V +     V+ + S+D TIKVW+   G   R LKGH   V          
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD-------- 64

Query: 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354
                                        I  +   +L++                +   
Sbjct: 65  -----------------------------ISFDHSGKLLASCSADMTIKLWDFQGFECIR 95

Query: 355 RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY 414
            M GH   V+ V   P+G  + SAS DK+IK+W   TG  V  F GH             
Sbjct: 96  TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH------------- 142

Query: 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 474
                            + +   + D  L+ S S D T++VW + T++ K +L  H   V
Sbjct: 143 --------------REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 475 FAVDWSPDGEKVASGGKDRVLKLWMG 500
             + W+P+    +            G
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSG 214

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  149 bits (375), Expect = 2e-41
 Identities = 69/393 (17%), Positives = 128/393 (32%), Gaps = 72/393 (18%)

Query: 71  LEKHKVSVEKVLSIVYQPQAVFRIRPVNR----CSATIAGHTEAVLSVAFSPDGRQLASG 126
           L+       K  +     Q    I PV R       T+ GH   + ++ +  D R L S 
Sbjct: 14  LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSA 73

Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186
           S D  + +WD  T   +       +WV+  A++  G ++  G        ++ +T + + 
Sbjct: 74  SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133

Query: 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV 246
                       +S      +           D    +WD+   +     +GHT  V  +
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSS---GDTTCALWDIETGQQTTTFTGHTGDVMSL 190

Query: 247 KWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305
               D  ++ +G+ D + K+W+  +G   +   GH   +N++            F   G 
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI-----------CFFPNGN 239

Query: 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL-VN 364
                                       +GSDD T  L++    ++  T    +    + 
Sbjct: 240 -------------------------AFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYC 424
            V FS  G+ + +   D +  +W+        V  GH   V  +                
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL---------------- 318

Query: 425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD 457
                        + D   + +GS DS LK+W+
Sbjct: 319 -----------GVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  134 bits (336), Expect = 7e-36
 Identities = 75/352 (21%), Positives = 123/352 (34%), Gaps = 64/352 (18%)

Query: 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
            GH   +  + W  D + LVS S+ G+L  WD  T       +     W+   ++ P   
Sbjct: 52  RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-IPLRSSWVMTCAYAPSGN 110

Query: 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266
              C    +     + +  + +  +    L+GHT  ++C ++  D  I T S D T  +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326
           +   G+      GH   V                                     +    
Sbjct: 170 DIETGQQTTTFTGHTGDVM------------------------------------SLSLA 193

Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
                 VSG+ D +  LW+       +   TGH+  +N + F P+G   A+ S D + +L
Sbjct: 194 PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252

Query: 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446
           ++                                  Y   ++ C ++  S+S   RLLL+
Sbjct: 253 FD-------------------------LRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287

Query: 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           G  D    VWD         L GH + V  +  + DG  VA+G  D  LK+W
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.0 bits (167), Expect = 2e-13
 Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 21/232 (9%)

Query: 269 TQGKLIRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327
            Q +  R L+GH   + ++   T+   L + + D     + S    K  A+   +     
Sbjct: 43  IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS---- 98

Query: 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
                           W    +  P         L N            +    + +   
Sbjct: 99  ----------------WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH 142

Query: 388 NGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG 447
            G       +    +          ++              +  +   S + D+RL +SG
Sbjct: 143 TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202

Query: 448 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499
           + D++ K+WD+R    +Q   GH  ++ A+ + P+G   A+G  D   +L+ 
Sbjct: 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 9e-09
 Identities = 34/207 (16%), Positives = 70/207 (33%), Gaps = 19/207 (9%)

Query: 311 EEMKKAALERYNKIK-GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS 369
           +++++ A +  N+I+         + S           +  + +  + GH   +  +++ 
Sbjct: 5   DQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWG 64

Query: 370 PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS 429
            D + + SAS D  + +W+  T   V         V    +     +        +  + 
Sbjct: 65  TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124

Query: 430 ------------------CCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 471
                                       D   +++ S D+T  +WDI T +      GH 
Sbjct: 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184

Query: 472 DEVFAVDWSPDGEKVASGGKDRVLKLW 498
            +V ++  +PD     SG  D   KLW
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLW 211

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 1e-35
 Identities = 75/409 (18%), Positives = 140/409 (34%), Gaps = 88/409 (21%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
           +    + GH + V++      G ++ SGS D T+++W   T   +    GH   V     
Sbjct: 7   KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65

Query: 159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218
             +                  +T K            + G +     ++   +R VS S+
Sbjct: 66  RDNIII----------SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115

Query: 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK 278
           D   R+WD+   +C+  L GH  AV CV++ G  V+   + D  +KVW+      +  L+
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG-AYDFMVKVWDPETETCLHTLQ 174

Query: 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338
           GH + V SL                                            +VSGS D
Sbjct: 175 GHTNRVYSLQFD--------------------------------------GIHVVSGSLD 196

Query: 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398
            ++ +W+        T +TGHQ L + +    +   + S + D ++K+W+          
Sbjct: 197 TSIRVWDVETGNCIHT-LTGHQSLTSGMELKDN--ILVSGNADSTVKIWD---------- 243

Query: 399 RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458
                                             ++     +   +++ S D T+K+WD+
Sbjct: 244 ----------------IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287

Query: 459 RTQKLKQDLP-----GHADEVFAVDWSPDGEKVASGGKD----RVLKLW 498
           +T +  ++L      G    V+ +  S      A G ++      L + 
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 7e-24
 Identities = 65/289 (22%), Positives = 109/289 (37%), Gaps = 19/289 (6%)

Query: 225 WDVSLRKCVICLSGHTLAV-TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHW 283
           W     K    L GH   V TC+++ G+  I +GS D T+KVW    GK +R L GH   
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI--KGNAPERLVSGSDDFTM 341
           V S  +     +            +   E         + +       +R+VSGS D T+
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401
            +W+    +     M     +    Y     + V S ++D  +K+W+  T   +   +GH
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDG---RRVVSGAYDFMVKVWDPETETCLHTLQGH 176

Query: 402 VGPVYQIRFE-----------LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450
              VY ++F+            I  +   +                      +L+SG+ D
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 236

Query: 451 STLKVWDIR-TQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           ST+K+WDI+  Q L+     +  +        +   V +   D  +KLW
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.7 bits (236), Expect = 3e-22
 Identities = 70/305 (22%), Positives = 115/305 (37%), Gaps = 28/305 (9%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
            +C  T+ GHT  V S     +       SG T   L   N +T     T + +      
Sbjct: 47  GKCLRTLVGHTGGVWSSQMRDNIII----SGSTDRTLKVWNAETGECIHTLYGHTSTVRC 102

Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
                K +VSGS+   L+ WD +TG+            + G       +    RR VS +
Sbjct: 103 MHLHEKRVVSGSRDATLRVWDIETGQ--------CLHVLMGHVAAVRCVQYDGRRVVSGA 154

Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL 277
            D   ++WD     C+  L GHT  V  +++ G   + +GS D +I+VW+   G  I  L
Sbjct: 155 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI-HVVSGSLDTSIRVWDVETGNCIHTL 213

Query: 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN------APER 331
            GH    + + L     L +G  D T K +          L+  NK +            
Sbjct: 214 TGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF 272

Query: 332 LVSGSDDFTMFLWEPAVSKQPKT----RMTGHQQLVNHVYFSPDGQWVASASFDKS---- 383
           +++ SDD T+ LW+    +  +        G   +V  +  S      A  S + +    
Sbjct: 273 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 332

Query: 384 IKLWN 388
           + + +
Sbjct: 333 LLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 91  VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--- 147
           ++ I+           +           +   + + S D TV+LWDL T   +       
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300

Query: 148 --GHKNWVLCIAWSADGKHLVSGSKAG----ELQCWD 178
             G    V  I  S        GS+ G    +L   D
Sbjct: 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 4/37 (10%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTT----VRLWDLN 138
           G    V  +  S      A GS + T    + + D +
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  131 bits (329), Expect = 2e-34
 Identities = 71/381 (18%), Positives = 134/381 (35%), Gaps = 81/381 (21%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK------------------CT 147
            HT  V  V FS DG  LA+G  + T +++ ++  + + +                    
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
               ++  + +S DGK L +G++   ++ WD +  K                    +   
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV------MILQGHEQDIYSLDYF 172

Query: 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
               + VS S D   RIWD+   +C + LS      T     GDG  I  GS D  ++VW
Sbjct: 173 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232

Query: 267 ETTQGKLIRELK-------GHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPEEMKKAAL 318
           ++  G L+  L        GH   V S+  +    ++ +G+ D + K ++      K+  
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD- 291

Query: 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378
                                     +   S   +    GH+  V  V  + + +++ S 
Sbjct: 292 -------------------------SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326

Query: 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438
           S D+ +  W+  +G  + + +GH   V  +                        +  S  
Sbjct: 327 SKDRGVLFWDKKSGNPLLMLQGHRNSVISV---------------------AVANGSSLG 365

Query: 439 ADSRLLLSGSKDSTLKVWDIR 459
            +  +  +GS D   ++W  +
Sbjct: 366 PEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  128 bits (321), Expect = 2e-33
 Identities = 72/422 (17%), Positives = 129/422 (30%), Gaps = 72/422 (17%)

Query: 103 TIAGHTEAVLSVAFSPDGRQ---LASGSGDTTVRLWDLNTQ----TPMFKCTGHKNWVLC 155
             A H++ +       D +          +    L++          + K   H + V C
Sbjct: 8   QRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC 67

Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           + +S DG++L +G      Q +    G      LS                         
Sbjct: 68  VKFSNDGEYLATGCN-KTTQVYRVSDGSLVAR-LSDDSAANKDPENLNTS---------- 115

Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLI 274
                                    L +  V +  DG    TG++D  I++W+    K++
Sbjct: 116 -------------------SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV 156

Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHT------GKQYSSPEEMKKAALERYNKIKGNA 328
             L+GH   + SL                       +       +          +    
Sbjct: 157 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 216

Query: 329 PERLVSGSDDFTMFLW------EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
            + + +GS D  + +W                  TGH+  V  V F+ DGQ V S S D+
Sbjct: 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 276

Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
           S+KLWN       +  +       ++                 +     +   + + +  
Sbjct: 277 SVKLWNLQNANNKSDSKTPNSGTCEV---------------TYIGHKDFVLSVATTQNDE 321

Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVD------WSPDGEKVASGGKDRVLK 496
            +LSGSKD  +  WD ++      L GH + V +V         P+    A+G  D   +
Sbjct: 322 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 381

Query: 497 LW 498
           +W
Sbjct: 382 IW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (255), Expect = 2e-24
 Identities = 65/307 (21%), Positives = 109/307 (35%), Gaps = 45/307 (14%)

Query: 96  PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
           P N  +++       + SV FSPDG+ LA+G+ D  +R+WD+  +  +    GH+  +  
Sbjct: 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168

Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
           + +   G  LVSGS    ++ WD +TG+ S          I              +   +
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCS------LTLSIEDGVTTVAVSPGDGKYIAA 222

Query: 216 ASKDGDARIWDV-------SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267
            S D   R+WD         L       +GH  +V  V +  DG  + +GS D ++K+W 
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

Query: 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327
                   + K        +                  +Y                    
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-------------------- 322

Query: 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY------FSPDGQWVASASFD 381
               ++SGS D  +  W+   S  P   + GH+  V  V         P+    A+ S D
Sbjct: 323 ----ILSGSKDRGVLFWDKK-SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

Query: 382 KSIKLWN 388
              ++W 
Sbjct: 378 CKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.6 bits (241), Expect = 1e-22
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 14/156 (8%)

Query: 85  VYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----- 139
           V+  +  F +  ++  + +  GH ++V SV F+ DG+ + SGS D +V+LW+L       
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290

Query: 140 -------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGH 192
                   T      GHK++VL +A + + ++++SGSK   +  WD ++G P    L GH
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM-LQGH 349

Query: 193 KKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDV 227
           +  +  ++        P    F + S D  ARIW  
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (175), Expect = 3e-14
 Identities = 49/274 (17%), Positives = 92/274 (33%), Gaps = 46/274 (16%)

Query: 252 GVIYTGSQDCTIKVWETTQGKLIR----ELKGHGHWVNSLALSTEYALRTGAFDHTGKQY 307
                   +    ++     + I     +   H   V  +  S +        + T + Y
Sbjct: 29  PDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVY 88

Query: 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY 367
              +    A L   +    +                          +        +  V 
Sbjct: 89  RVSDGSLVARLSDDSAANKD--------------------PENLNTSSSPSSDLYIRSVC 128

Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV- 426
           FSPDG+++A+ + D+ I++W+    K V + +GH   +Y + +          +    V 
Sbjct: 129 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188

Query: 427 --------------DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP---- 468
                               ++     D + + +GS D  ++VWD  T  L + L     
Sbjct: 189 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 248

Query: 469 ---GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499
              GH D V++V ++ DG+ V SG  DR +KLW 
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score =  124 bits (312), Expect = 2e-32
 Identities = 34/373 (9%), Positives = 84/373 (22%), Gaps = 58/373 (15%)

Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHL-VSGSKA 171
            A       +   +    + + D+ + T    C    K        + D +   V  +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231
           G++   D  T K + +          G S     ++   +   +             ++ 
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 232 CVICL--------------SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL 277
             + +                    V  ++   DG +Y    D      +   GK    L
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI--YKMDVKTGKYTVAL 179

Query: 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337
               +W      +                +       + ++        +  +   +   
Sbjct: 180 PLR-NWNRKGYSA----------PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228

Query: 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397
            +     +    K          +L      SP          +  +  ++    K +  
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKA 287

Query: 398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD 457
                   Y + F                                 L  G   + L V++
Sbjct: 288 A-NLDHTYYCVAF---------------------------DKKGDKLYLGGTFNDLAVFN 319

Query: 458 IRTQKLKQDLPGH 470
             T +  +++   
Sbjct: 320 PDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 89.4 bits (220), Expect = 4e-20
 Identities = 37/362 (10%), Positives = 84/362 (23%), Gaps = 64/362 (17%)

Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
            A  A  ++++  +    L   D  +     + +   K         P +  A    +V 
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTA----YVL 57

Query: 216 ASKDGDARIWDVSLRKCVICL------SGHTLAVTCVKW-------------GGDGVIYT 256
            +  GD    D+   K                ++                        + 
Sbjct: 58  NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 117

Query: 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316
             +   ++V+ T  G   + ++          +                +          
Sbjct: 118 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTV 177

Query: 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376
           AL   N  +                   +       ++       L     F  D Q  A
Sbjct: 178 ALPLRNWNRKGY-------------SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224

Query: 377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436
           +A         +  TGK        +                   ++  +      +   
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTE----------------LYFTGLRSPKDPNQIY 268

Query: 437 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496
              +            L  +D++ +KL +         + V +   G+K+  GG    L 
Sbjct: 269 GVLN-----------RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLA 316

Query: 497 LW 498
           ++
Sbjct: 317 VF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP 142
                  VAF   G +L  G     + +++ +T   
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  116 bits (291), Expect = 3e-29
 Identities = 59/439 (13%), Positives = 118/439 (26%), Gaps = 107/439 (24%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAW- 158
            H   + SV+         S SGD  +++WD                  HK+ +  +   
Sbjct: 12  AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 159 ------SADGKHLVSGSKAGELQCWDPQTGKPSGNPL---------SGHKKWITGISWEP 203
                 + +   + + S +G+L  +       +   +            K     + W  
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 204 VHLNAPCRRFVSASKDGDARIWDV------------------SLRKCVICLSGHTLAVTC 245
            +      R V+    G   IW                     L+  V      +   T 
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 246 VKWGGDGVIYTGSQDCTIKVWE------TTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
           V     G+I TG  + T+++ E          +    +  + + + S+  S + +L   A
Sbjct: 190 VDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249

Query: 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359
            D       +  E +                       +    L  P  S Q       H
Sbjct: 250 HDSNSFGCITLYETEF---------------------GERIGSLSVPTHSSQASLGEFAH 288

Query: 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP 419
              V  + F+  G+ + SA +D  ++ W+  T + +     H   +      L       
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL------- 341

Query: 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW 479
                           +       L          V+D++  K             +   
Sbjct: 342 ----------------AVDEHGDSLAEPG------VFDVKFLK---------KGWRSGMG 370

Query: 480 SPDGEKVASGGKDRVLKLW 498
           +   E +     DR ++ +
Sbjct: 371 ADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 4e-12
 Identities = 36/312 (11%), Positives = 77/312 (24%), Gaps = 46/312 (14%)

Query: 232 CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK----LIRELKGHGHWVNSL 287
                  H   +  V       + + S D  +KVW+           +      H     
Sbjct: 6   TANAGKAHDADIFSVSACNSFTV-SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 288 ALSTEYA----------LRTGAFDHTGK--QYSSPEEMKKAALERYNKIKGNA------- 328
            +    A          + T +F       + +  +E KK   E+ + +  +        
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 329 -----------PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV-----YFSPDG 372
                        RLV+     T ++W+          +T +      +           
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM 432
           Q+  S    +   +  G     V +                      ++   V       
Sbjct: 185 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 433 SLYSWSADSRLLLSGSKDSTLKVW------DIRTQKLKQDLPGHADEVFAVDWSPDGEKV 486
            L      +        ++              + +       H+  V ++ ++  GE +
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304

Query: 487 ASGGKDRVLKLW 498
            S G D  L+ W
Sbjct: 305 CSAGWDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 6e-11
 Identities = 32/210 (15%), Positives = 62/210 (29%), Gaps = 31/210 (14%)

Query: 97  VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM------FKCTGHK 150
           +     +    ++   SV  S  G  +A+G  + TV++ +L+T  P+           + 
Sbjct: 173 LQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNS 231

Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCW---------------DPQTGKPSGNPLSGHKKW 195
           N +  + +S  G  L     +    C                 P     +      H  W
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291

Query: 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV----TCVKWGGD 251
           +  +S+             SA  DG  R WDV  ++ +  L+ H   +      +     
Sbjct: 292 VMSLSFND-----SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 346

Query: 252 GVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
           G          +K  +      +       
Sbjct: 347 GDSLAEPGVFDVKFLKKGWRSGMGADLNES 376

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (286), Expect = 5e-29
 Identities = 43/379 (11%), Positives = 96/379 (25%), Gaps = 56/379 (14%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC---TGHKNWVLCIAWSAD- 161
              + +  +   P    L   S D ++ ++  + Q           +K+ +LC  +  + 
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
              +  G+  GE+   D           +           +          +    +  D
Sbjct: 69  DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128

Query: 222 AR--IWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG 279
            R     V   K +   +                +  G  +  ++ +     +       
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188

Query: 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
                                    + Y+      + A+E ++              DD+
Sbjct: 189 ESGLKY-------QIRDVALLPKEQEGYACSSIDGRVAVEFFD-----------DQGDDY 230

Query: 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399
                      +   + T     VN + FSP  +++ +A  D  I  WN  T K +  F 
Sbjct: 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290

Query: 400 GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459
                                            S+   +    +L   + D T K     
Sbjct: 291 KF----------------------------NEDSVVKIACSDNILCLATSDDTFKTNA-- 320

Query: 460 TQKLKQDLPGHADEVFAVD 478
              + Q +  +A  ++ + 
Sbjct: 321 --AIDQTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.4 bits (230), Expect = 2e-21
 Identities = 31/353 (8%), Positives = 85/353 (24%), Gaps = 44/353 (12%)

Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS--GHKKWITGISWEPVH 205
             K+++  I        L+  S  G L  +       + + L    +K  +   ++    
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF---- 64

Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265
                        + D +I+  +++  ++ +              +  +           
Sbjct: 65  -----------IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD 113

Query: 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
                              +   L      R         +  +    K           
Sbjct: 114 KL--------------IAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159

Query: 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
            +     ++ S      L                 Q+ +      + +  A +S D  + 
Sbjct: 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219

Query: 386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL 445
           +                           + FR         +++  ++   +S   + L 
Sbjct: 220 VEFFDDQGDDYNS------------SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY 267

Query: 446 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           +   D  +  W+++T+K  ++     +E   V  +     +     D   K  
Sbjct: 268 TAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 8e-09
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 6/99 (6%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
           +R +         V S+ FSP  + L +   D  +  W+L T+  +       N    + 
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVK 299

Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
            +     L   +     +             +  +   I
Sbjct: 300 IACSDNILCLATSDDTFKTN-----AAIDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 5/37 (13%), Positives = 12/37 (32%)

Query: 462 KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           ++ Q      D +  +   P    +     D  L ++
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVY 38

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (284), Expect = 1e-28
 Identities = 49/398 (12%), Positives = 125/398 (31%), Gaps = 54/398 (13%)

Query: 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161
            T+ GH  +V++     +   + +G+ D  +R++D   +  + + +GH   V  + ++  
Sbjct: 6   TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64

Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
           G  LVSGS    ++ WD + G  +       +   + +    +      +  V+ S+D  
Sbjct: 65  G-ILVSGSTDRTVRVWDIKKGCCTHV----FEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119

Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
             +W +     V                 +   + G                      H 
Sbjct: 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG------------------HM 161

Query: 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
             V             G    +G   ++      A ++    + G+      +  D    
Sbjct: 162 ASVR-------TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 214

Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401
                ++    +     + +L+  +        +   S    +                 
Sbjct: 215 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAA------------- 261

Query: 402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ 461
                     +        +       +   ++ ++     +L+SGS ++   ++++R+ 
Sbjct: 262 -------DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 313

Query: 462 K-LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           K +  ++   AD++++V++      VA+  KD    L 
Sbjct: 314 KLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 9e-09
 Identities = 13/64 (20%), Positives = 28/64 (43%)

Query: 436 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 495
               +   +++G+ D  ++V+D   +K    L GH   V+A+ ++  G  V+      V 
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 77

Query: 496 KLWM 499
              +
Sbjct: 78  VWDI 81

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 6e-08
 Identities = 10/102 (9%), Positives = 31/102 (30%), Gaps = 6/102 (5%)

Query: 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187
                 +   +      K + H   +  I       +++      +   ++ ++GK    
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 318

Query: 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229
            +      I  ++++   L        +  KDG + +  +  
Sbjct: 319 NILKDADQIWSVNFKGKTL------VAAVEKDGQSFLEILDF 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 91  VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN 138
           ++ +R      A I    + + SV F      +A+   D    L  L+
Sbjct: 307 IYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (274), Expect = 2e-27
 Identities = 55/358 (15%), Positives = 99/358 (27%), Gaps = 76/358 (21%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSA 160
            H E V +V  S   R + +G     V++WD++            C    N++       
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
           DG  L+ G +A  L  WD     P                +           F   S   
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKA---ELTSSAPACYALAISPDSKVCFSCCSDGN 164

Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGH 280
            A     +             A           ++TG  D T++ W+  +G+ +++    
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDF 223

Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340
              + SL            +  TG+  +   E                            
Sbjct: 224 TSQIFSL-----------GYCPTGEWLAVGMES--------------------------- 245

Query: 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400
             +    V+K  K ++  H+  V  + F+  G+W  S   D  +  W    G  +     
Sbjct: 246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-K 304

Query: 401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458
               V                                S D + +++GS D    V+++
Sbjct: 305 ESSSVLSC---------------------------DISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.9 bits (234), Expect = 6e-22
 Identities = 35/324 (10%), Positives = 87/324 (26%), Gaps = 32/324 (9%)

Query: 203 PVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
             H+ A  + + V    D           + +  L  H   V  V        +YTG   
Sbjct: 14  SFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-K 71

Query: 261 CTIKVWETTQGKLIREL-----KGHGHWVNSLALSTEYALRTGA-------FDHTGKQYS 308
             +KVW+ +       +         +++ S  L  +                       
Sbjct: 72  GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131

Query: 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF 368
             +    ++      +  +   ++                ++    +  GH    + +  
Sbjct: 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191

Query: 369 SPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF--------------ELIY 414
           S DG  + +   D +++                   ++ + +               +  
Sbjct: 192 SNDGTKLWTGGLDNTVR-SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250

Query: 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 474
                 + Y +     C+    ++   +  +S  KD+ L  W              +  V
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSV 309

Query: 475 FAVDWSPDGEKVASGGKDRVLKLW 498
            + D S D + + +G  D+   ++
Sbjct: 310 LSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 3e-15
 Identities = 42/289 (14%), Positives = 72/289 (24%), Gaps = 43/289 (14%)

Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
                      + S    PDG  L  G   +T+ +WDL   TP  K     +   C A +
Sbjct: 89  SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148

Query: 160 ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
                 V  S                 N     +          + ++    +  +   D
Sbjct: 149 ISPDSKVCFSC----CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204

Query: 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG 279
              R WD+   + +      T  +  + +   G       + +             +L  
Sbjct: 205 NTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL 263

Query: 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
           H   V SL            F + GK                           VS   D 
Sbjct: 264 HESCVLSL-----------KFAYCGK-------------------------WFVSTGKDN 287

Query: 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
            +  W            +     V     S D +++ + S DK   ++ 
Sbjct: 288 LLNAWR--TPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 436 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQ-----DLPGHADEVFAVDWSPDGEKVASGG 490
           + S  +R + +G     +KVWDI     K      D     + + +    PDG  +  GG
Sbjct: 58  TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116

Query: 491 KDRVLKLWM 499
           +   L +W 
Sbjct: 117 EASTLSIWD 125

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 3e-27
 Identities = 55/290 (18%), Positives = 104/290 (35%), Gaps = 25/290 (8%)

Query: 231 KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290
           + + C S  +  V C+++     I +G +D TIK+W+    +  R L GH   V  L   
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQ-KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

Query: 291 TEYALRTGAFDHTGKQY--SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348
               +   +          +                       +V+ S D ++ +W+ A 
Sbjct: 65  ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
                 R               D +++ SAS D++IK+WN +T +FV    GH   +  +
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 184

Query: 409 RFE-----------LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD 457
           ++             I  +         V       +     D++ ++SG+ D  +KVWD
Sbjct: 185 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 244

Query: 458 IRT---------QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           +               + L  H+  VF + +  D  ++ S   D  + +W
Sbjct: 245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 5e-27
 Identities = 67/301 (22%), Positives = 115/301 (38%), Gaps = 29/301 (9%)

Query: 103 TIAGHTEAVLSV-AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161
            I   +E    V     D +++ SG  D T+++WD NT       TGH   VLC+ +   
Sbjct: 7   RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66

Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
                       +      T +            +       +HL       V+ SKD  
Sbjct: 67  VI----------ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116

Query: 222 ARIWDVSLRKCV---ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK 278
             +WD++    +     L GH  AV  V +     I + S D TIKVW T+  + +R L 
Sbjct: 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY-IVSASGDRTIKVWNTSTCEFVRTLN 175

Query: 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI---KGNAPERLVSG 335
           GH   +  L       + +G+ D+T + +          LE + ++        +R+VSG
Sbjct: 176 GHKRGIACLQYRDRL-VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSG 234

Query: 336 SDDFTMFLWEPAVSKQPKT--------RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
           + D  + +W+   +  P+          +  H   V  +    D   + S+S D +I +W
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTILIW 292

Query: 388 N 388
           +
Sbjct: 293 D 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 11/95 (11%)

Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT---------QTPM 143
           R+  +   +          L      D +++ SG+ D  +++WDL              +
Sbjct: 201 RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260

Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
                H   V  + +  D   +VS S    +  WD
Sbjct: 261 RTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  109 bits (271), Expect = 9e-27
 Identities = 43/399 (10%), Positives = 96/399 (24%), Gaps = 55/399 (13%)

Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKH 164
             E +   A++ D  Q+A    +  V +++ +    +       H   V  + W+ D   
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 165 LVSGSKAGELQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
           +V+         W  +        +     +    + W P                    
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHW 283
             +       I     +  ++        ++  GS D   +++     ++          
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343
                                       E   +    +         R+   S D T+ L
Sbjct: 186 ------------------SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 227

Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
            +        T  +     +  V F  +   VA+   D    L+   +      F G + 
Sbjct: 228 ADADKKMAVATLASETLP-LLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLD 285

Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL 463
              Q                              + D +    GS  +   +  +     
Sbjct: 286 VPKQ-----------------SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL----- 323

Query: 464 KQDLPGHADEVFAVDWSPDGE----KVASGGKDRVLKLW 498
                 H + V  +     G+    +  + G D  + +W
Sbjct: 324 ------HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.1 bits (224), Expect = 2e-20
 Identities = 40/323 (12%), Positives = 94/323 (29%), Gaps = 30/323 (9%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCI 156
                +  H   V  V ++PD  ++ +   D    +W L  +   P            C+
Sbjct: 42  VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV 101

Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
            W+ + K    GS +  +     +            K   + +     H         + 
Sbjct: 102 RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH--PNSVLLAAG 159

Query: 217 SKDGDARIWDVSLRK------------------CVICLSGHTLAVTCVKWGGDGVIYT-G 257
           S D   RI+   +++                   +   S     V  V +  +G      
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219

Query: 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317
           S D T+ + +  +   +  L      + ++   TE +L     D     ++      K +
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLS 279

Query: 318 LERYNKIKGNAPERLVSGSDDFT---MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW 374
                 +   + +R ++  + F            +       + H+  V+ +     G+ 
Sbjct: 280 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA 339

Query: 375 ----VASASFDKSIKLWNGTTGK 393
                 +   D  + +W+  + +
Sbjct: 340 KCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.3 bits (165), Expect = 4e-13
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 436 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKDR 493
           +W+ D   +     +  + +++    K  Q  +L  H  +V  VDW+PD  ++ + G DR
Sbjct: 14  AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 73

Query: 494 VLKLWM 499
              +W 
Sbjct: 74  NAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.1 bits (141), Expect = 4e-10
 Identities = 37/206 (17%), Positives = 65/206 (31%), Gaps = 16/206 (7%)

Query: 80  KVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT 139
           K +     P       P        +     V  V FS +G ++A  S D+TV L D + 
Sbjct: 173 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 232

Query: 140 QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE-LQCWDPQTGKPSGNPLSGHKKWITG 198
           +  +         +L + +  +   + +G      L  +D   GK S     G       
Sbjct: 233 KMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLS---FGGRLDVPKQ 289

Query: 199 ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-----V 253
            S   +       R    + D  A     S        S H  +V+ +     G      
Sbjct: 290 SSQRGLT-----ARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQ 343

Query: 254 IYTGSQDCTIKVWE-TTQGKLIRELK 278
             T   D  + +W+  +    +++LK
Sbjct: 344 FCTTGMDGGMSIWDVRSLESALKDLK 369

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  108 bits (268), Expect = 2e-26
 Identities = 29/340 (8%), Positives = 70/340 (20%), Gaps = 34/340 (10%)

Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGD--TTVRLWDLNTQTPMFKCTGHK 150
            I+ V+            +  V    D +            + ++D  T     K   + 
Sbjct: 27  FIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL 85

Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP-----VH 205
             V  +    +       +                       +  IT  +         +
Sbjct: 86  GNVFAMGVDRN-GKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY 144

Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265
                             ++D+  RK     + ++             +Y  S       
Sbjct: 145 GFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS 204

Query: 266 WETTQGKL-------IRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQ----------- 306
            +                +       N   L         G +D                
Sbjct: 205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG 264

Query: 307 -YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
            Y     ++ + L     + G          +   +  ++         ++T  +  +  
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-----TRKVTEVKNNLTD 319

Query: 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405
           +  S D + V     D  I  +     +          P+
Sbjct: 320 LRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 99.6 bits (246), Expect = 2e-23
 Identities = 38/395 (9%), Positives = 86/395 (21%), Gaps = 69/395 (17%)

Query: 113 SVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA 171
           +  FSP DG  +A  S      + D++              +  +    D K        
Sbjct: 7   AEDFSPLDGDLIAFVSRGQ-AFIQDVSGTYV--LKVPEPLRIRYVRRGGDTKVAFIHGTR 63

Query: 172 G--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229
               L  +D +TGK        +   +  +  +     A            D      ++
Sbjct: 64  EGDFLGIYDYRTGKA--EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 121

Query: 230 RKCVICLSGHTLAVTCVKW------GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHW 283
            +           ++                  G     I V++    K+      + H 
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 181

Query: 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343
                 +    L   ++                                     D  +  
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSP------------------------------DRVVLN 211

Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
           +   V  +P   +       N     P      +  +D +      +             
Sbjct: 212 FSFEVVSKPFV-IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV--------- 261

Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL 463
                                +       S+      +       +   L  +D++T+K+
Sbjct: 262 -----------DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV 310

Query: 464 KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
                   + +  +  S D + V     D  +  +
Sbjct: 311 T----EVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score =  100 bits (249), Expect = 7e-24
 Identities = 39/395 (9%), Positives = 94/395 (23%), Gaps = 61/395 (15%)

Query: 109 EAVLSVAFSPDGRQL-----ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
           E  +  A +PD R++     A  +  T   + D      +    G   ++     + DG 
Sbjct: 2   EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGS 59

Query: 164 HL----------VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
            +            G +   ++ +DP T  P+ +            ++  +    P  + 
Sbjct: 60  FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119

Query: 214 V---SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ 270
           +     S      + D+  +     L         +        +   +D ++       
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH--IFPTAPDTFFMHCRDGSLAKVAFGT 177

Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330
                             L    A            + +                     
Sbjct: 178 EGTPEITHTEVFHPEDEFLINHPAYSQ---KAGRLVWPTYTGKIHQIDLSSGDA------ 228

Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
           + +   +  T              ++  H+ L                +  + + + +  
Sbjct: 229 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK 288

Query: 391 TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD--SRLLLSGS 448
           TG+ +A F      +  I                           + S D    L    +
Sbjct: 289 TGERLAKFEMG-HEIDSI---------------------------NVSQDEKPLLYALST 320

Query: 449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
            D TL + D  + +  + +         +  +  G
Sbjct: 321 GDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 95.6 bits (236), Expect = 4e-22
 Identities = 32/323 (9%), Positives = 75/323 (23%), Gaps = 37/323 (11%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLA----------SGSGDTTVRLWDLNTQTPMFKCT 147
            R    I G    + +   + DG  +A           G     V ++D  T  P     
Sbjct: 38  GRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE 95

Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
                   +        L    K      + P       +      K +  +        
Sbjct: 96  LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP 155

Query: 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW-------GGDGVIYTGSQD 260
                F    +DG                                      G +   +  
Sbjct: 156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT 215

Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
             I   + + G                         T A    G +    +++       
Sbjct: 216 GKIHQIDLSSGDAKFLPAVEAL--------------TEAERADGWRPGGWQQVAYHRALD 261

Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW--VASA 378
              +  +  +     +    + + +    ++      GH+  ++ +  S D +    A +
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE--IDSINVSQDEKPLLYALS 319

Query: 379 SFDKSIKLWNGTTGKFVAVFRGH 401
           + DK++ + +  +G+ +      
Sbjct: 320 TGDKTLYIHDAESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 84.8 bits (208), Expect = 1e-18
 Identities = 36/368 (9%), Positives = 91/368 (24%), Gaps = 73/368 (19%)

Query: 157 AWSADGKHL-----VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
           A + D + +        +   +    D + G+  G    G   ++               
Sbjct: 8   APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG---FLPNPVVAD-------- 56

Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG 271
                                     G  +A           I  G +   ++V++    
Sbjct: 57  -------------------------DGSFIAHAS---TVFSRIARGERTDYVEVFDPVTL 88

Query: 272 KLIRELKGH-------GHWVNSLALSTE-----YALRTGAFDHTGKQYSSPEEMKKAALE 319
               +++         G +    +L+ +     +   + A              +   + 
Sbjct: 89  LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 148

Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-----PKTRMTGHQQLVNHVYFSPDGQW 374
               I   AP+       D ++                +      + L+NH  +S     
Sbjct: 149 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR 208

Query: 375 VASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM 432
           +   ++   I   + ++G   F+              +        P  +  V       
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW-------RPGGWQQVAYHRALD 261

Query: 433 SLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGG 490
            +Y            +    + V D +T +         + + +++ S D +    A   
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLYALST 320

Query: 491 KDRVLKLW 498
            D+ L + 
Sbjct: 321 GDKTLYIH 328

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 75.6 bits (184), Expect = 2e-15
 Identities = 24/217 (11%), Positives = 54/217 (24%), Gaps = 26/217 (11%)

Query: 94  IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKCTGHKNW 152
            R ++         T          DG         + T  +       P       +  
Sbjct: 142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFL 196

Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVH------ 205
           +   A+S     LV  +  G++   D  +G       +    +      W P        
Sbjct: 197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 256

Query: 206 ---------LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---V 253
                    L      +   +      + D    + +         +  +    D    +
Sbjct: 257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLL 315

Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290
               + D T+ + +   G+ +R +   GH    +  +
Sbjct: 316 YALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 9e-07
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQL--ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
               A        + S+  S D + L  A  +GD T+ + D  +   +       +    
Sbjct: 290 GERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQV 348

Query: 156 IAWSADG 162
           I  +  G
Sbjct: 349 ITTADMG 355

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score =  100 bits (248), Expect = 1e-23
 Identities = 28/334 (8%), Positives = 67/334 (20%), Gaps = 57/334 (17%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLA----------SGSGDTTVRLWDLNTQTPMFKCT 147
                   G   ++        G   A           G     V ++D  T  P+    
Sbjct: 56  GVTLGHSLGAFLSL--AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE 113

Query: 148 GHKNWVLC-------IAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199
                          I   A    L      +                      K  +  
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-----DQLTKSASCF 168

Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC------LSGHTLAVTCVKWGGDG- 252
              P             S        D++                   +    +    G 
Sbjct: 169 HIHP----GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM 224

Query: 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312
           +++  +              +   + G+     +    +          +T        E
Sbjct: 225 LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284

Query: 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
             ++ L                            +V +       GH    + +  + DG
Sbjct: 285 HSRSCLAAAENTS-----------------SVTASVGQTSGPISNGHD--SDAIIAAQDG 325

Query: 373 QW--VASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
                A+++  + + +++  + +  +      GP
Sbjct: 326 ASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 13/141 (9%), Positives = 30/141 (21%), Gaps = 24/141 (17%)

Query: 356 MTGHQQLVNHVYFSPDGQ--WVA-SASFDKSIKLW--NGTTGKFVAVFRGHVGPVYQIRF 410
                            +   +   A F  + + W      G  +    G    +     
Sbjct: 15  AAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAV--- 71

Query: 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH 470
                  +  + + +   S                 G +   ++V+D  T     D+   
Sbjct: 72  -----AGHSGSDFALASTS-----------FARSAKGKRTDYVEVFDPVTFLPIADIELP 115

Query: 471 ADEVFAVDWSPDGEKVASGGK 491
               F+V          +   
Sbjct: 116 DAPRFSVGPRVHIIGNCASSA 136

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 96.5 bits (238), Expect = 1e-22
 Identities = 41/316 (12%), Positives = 76/316 (24%), Gaps = 22/316 (6%)

Query: 86  YQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK 145
           +   A+F   P      T  G     + +  +P G ++   +G + V    + + T    
Sbjct: 3   FSQTALFPSLP-----RTARGT---AVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEI 53

Query: 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS---------GNPLSGHKKWI 196
            T H +       S  G +  SG   G ++ WD                G          
Sbjct: 54  YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 113

Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256
           +                                R         +     +    D  +  
Sbjct: 114 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 173

Query: 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316
                        +         +    +  A +             G +    E+    
Sbjct: 174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 233

Query: 317 ALERYNKIKGNAP----ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
            +     + G        ++ S S D T+ +W  A  K  KT   G +     +      
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 293

Query: 373 QWVASASFDKSIKLWN 388
           Q + S S +  I   N
Sbjct: 294 QALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 91.1 bits (224), Expect = 7e-21
 Identities = 32/290 (11%), Positives = 72/290 (24%), Gaps = 13/290 (4%)

Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETT 269
            +    +         V         + H+   T  K    G    +G     +++W+TT
Sbjct: 30  DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT 88

Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
           Q   I +                          +  +  +     +              
Sbjct: 89  QTTHILKTTIPVFS----------GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138

Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
              ++G       +             +    +          +            +   
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198

Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
             G   A   G    V     +      +  +    V  S  +   +WS D   + S S 
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 258

Query: 450 DSTLKVWDIRTQKLKQDLPGHAD-EVFAVDWSPDGEKVASGGKDRVLKLW 498
           D T+K+W++ T K+++ +P     E   +      + + S   +  +   
Sbjct: 259 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.2 bits (136), Expect = 1e-09
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN-WVLCIAWSADGKHLVSGSKAGE 173
            +SPDG ++AS S D T+++W++ T                 +      + LVS S  G 
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 174 LQCWDP 179
           +   +P
Sbjct: 305 INFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.4 bits (121), Expect = 9e-08
 Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 436 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 495
             +     +   +  +++    + +    +    H+ +      SP G   ASG     +
Sbjct: 24  GNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV 82

Query: 496 KLWM 499
           ++W 
Sbjct: 83  RIWD 86

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 93.7 bits (231), Expect = 1e-21
 Identities = 25/373 (6%), Positives = 70/373 (18%), Gaps = 61/373 (16%)

Query: 123 LASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDP 179
           + + +    + + D        +          +    +  G+    + +K+  L   D 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI------------WDV 227
            TG+  G             S     L+   +            +            +D 
Sbjct: 64  VTGETLGRI-DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL 287
                                     +Y   +D  +   E   G L+ +           
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA--GTLVEDKPIQSWEA--- 177

Query: 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347
                       +          +      +           +     +    +   +  
Sbjct: 178 ----------ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227

Query: 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407
             +     +            +P             ++ ++      +          Y 
Sbjct: 228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNASIKRV-PLPHSYYS 284

Query: 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 467
           +                             S D   +  G     L  +D  T + K  +
Sbjct: 285 VNV---------------------------STDGSTVWLGGALGDLAAYDAETLEKKGQV 317

Query: 468 PGHADEVFAVDWS 480
               +   ++   
Sbjct: 318 DLPGNASMSLASV 330

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 76.8 bits (187), Expect = 6e-16
 Identities = 29/343 (8%), Positives = 76/343 (22%), Gaps = 45/343 (13%)

Query: 163 KHLVSGSKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
            ++++ ++  +L   D +         ++            P    A    + + +K   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIA----YATVNKSES 57

Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGG------DGVIYTGSQDCTIKVWETTQGKLIR 275
               D+   + +  +   T         G         +        +++          
Sbjct: 58  LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV 117

Query: 276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335
            L          A      +   A+   G +                 +  + P      
Sbjct: 118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKP-----I 172

Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395
                    +P V        +             D       ++   +   +  TG+  
Sbjct: 173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232

Query: 396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455
                 +                   ++           +               + L+ 
Sbjct: 233 MREVRIMDV----------------FYFSTAVNPAKTRAFGA------------YNVLES 264

Query: 456 WDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           +D+      + +P      ++V+ S DG  V  GG    L  +
Sbjct: 265 FDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 10/54 (18%), Positives = 17/54 (31%)

Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
               +  SV  S DG  +  G     +  +D  T     +     N  + +A  
Sbjct: 277 PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.7 bits (228), Expect = 1e-21
 Identities = 33/308 (10%), Positives = 77/308 (25%), Gaps = 42/308 (13%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
           +    TI+GH + + ++  +P    L SGS D  +  W  ++         H N ++ + 
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLD 53

Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
            S   ++                                   S   V            +
Sbjct: 54  NSKAQEYSSISWDDTLKVNGIT---------------KHEFGSQPKVASANNDGFTAVLT 98

Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL 277
            D D  I        +  +  ++             +     +       +         
Sbjct: 99  NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK 158

Query: 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK------------ 325
                  + +++S                    +  +        +              
Sbjct: 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 218

Query: 326 -----GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
                    + + +GS D  +F++      +    +  H+  VN++ +      + S+  
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGA 277

Query: 381 DKSIKLWN 388
           D  IK WN
Sbjct: 278 DACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.0 bits (208), Expect = 5e-19
 Identities = 38/290 (13%), Positives = 84/290 (28%), Gaps = 31/290 (10%)

Query: 231 KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290
           + +  +SGH   +T +       + +GS D  I  W ++        + H + + SL  S
Sbjct: 4   EVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNS 55

Query: 291 TEYALRTGAFDHTGKQYSSPEEMKKA------ALERYNKIKGNAPERLVSGSDDFTMFLW 344
                 + ++D T K     +    +      A            + L+         + 
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115

Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV------- 397
              ++            +   +      Q    +  + S  L      K   +       
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175

Query: 398 --------FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
                    +  +  +     +        S    +              +  L+ +GS 
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235

Query: 450 DSTLKVWDIRT-QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           D+ + ++ ++   K+ + L  H D V  + W      + S G D  +K W
Sbjct: 236 DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 3e-06
 Identities = 6/46 (13%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 91  VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
           ++ ++   +    +  H + V ++ +      L S   D  ++ W+
Sbjct: 241 IYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 92.7 bits (228), Expect = 1e-21
 Identities = 40/294 (13%), Positives = 83/294 (28%), Gaps = 4/294 (1%)

Query: 99  RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIA 157
                  GH +A+ +++ S DG+ L S   +  +  WD++T          H   +  I 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 158 WSADGKHLVSGSKAGELQCWDPQTG-KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
            ++ G                  +G   S    +       G++       A    +   
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 217 SKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR 275
           +     ++ +V +     C++  +      V      V        ++   +T       
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335
                 +    L  + +             + +          +           RL +G
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 336 SDDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
           S D ++ +W     S  P      H     +     +   + SA  D +IK WN
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 84.3 bits (206), Expect = 1e-18
 Identities = 46/313 (14%), Positives = 80/313 (25%), Gaps = 27/313 (8%)

Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
           GH   +  ++ SADGK L S    G +  WD  TG  +      H   ITGI        
Sbjct: 10  GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 208 APC--RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265
                   +     G + +         +      LAV+          Y      +   
Sbjct: 70  FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129

Query: 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
                           +    +A+  + +                  +  A +       
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189

Query: 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
             A       S     +              T H   V  V +SPD   +A+ S D S+ 
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL 445
           +WN        +       +  +                               +   ++
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNS-------------------------VIWLNETTIV 284

Query: 446 SGSKDSTLKVWDI 458
           S  +DS +K W++
Sbjct: 285 SAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 82.0 bits (200), Expect = 7e-18
 Identities = 38/293 (12%), Positives = 86/293 (29%), Gaps = 25/293 (8%)

Query: 231 KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLA 288
                  GH  A+T +    DG  +++   +  I  W+ + G   R     H   +  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 289 LSTEYALRTGA-------FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
            +++  L T +           G    S + +      +   +  +A   +   +    +
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 342 FLWEPAVSKQ--------------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
            ++      +               K  +    Q      +   G  V+           
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 388 NGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG 447
                     F        ++    +      ++       +  ++  SWS D+  L +G
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 448 SKDSTLKVWDIRTQKLKQDL--PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
           S D+++ VW++        +    HA          +   + S G+D  +K W
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 1e-05
 Identities = 20/110 (18%), Positives = 32/110 (29%), Gaps = 28/110 (25%)

Query: 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451
           G    V  GH   +  +                           S SAD + L S   + 
Sbjct: 2   GSIDQVRYGHNKAITAL---------------------------SSSADGKTLFSADAEG 34

Query: 452 TLKVWDIRTQKLKQDLP-GHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500
            +  WDI T    +  P  HA  +  +  +  G+       D +  +  G
Sbjct: 35  HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG 84

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 5/43 (11%), Positives = 17/43 (39%)

Query: 95  RPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL 137
           +P +        H  + ++     +   + S   D+ ++ W++
Sbjct: 255 KPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 8/96 (8%)

Query: 135 WDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK--PSGNPLSGH 192
            +          T H   V C++WS D   L +GS    +  W+       P     +  
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268

Query: 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
              +  + W            VSA +D + + W+V 
Sbjct: 269 MSSVNSVIW------LNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 0.002
 Identities = 13/167 (7%), Positives = 37/167 (22%), Gaps = 36/167 (21%)

Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330
           G + +   GH   + +L+ S +                                     +
Sbjct: 2   GSIDQVRYGHNKAITALSSSAD------------------------------------GK 25

Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
            L S   +  +  W+ +     +     H  ++  +  +  G     +  D    +  G 
Sbjct: 26  TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 85

Query: 391 TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437
           +G   +    +      +   +                       + 
Sbjct: 86  SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE 132

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.5 bits (212), Expect = 3e-19
 Identities = 43/354 (12%), Positives = 88/354 (24%), Gaps = 54/354 (15%)

Query: 111 VLSVAFSPDGRQLASGSGD-TTVRLWDLNTQT--PMFKCTGH-KNWVLCIAWS--ADGKH 164
              +++ P    +A   G    VR  D       P+ + TGH  + V  + +S     ++
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224
           L SG ++G++  W     K S +     K     ++             +S   +G    
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG--------PISDISWDFEGRRLC 131

Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
                R                      V     +     + ++   + +          
Sbjct: 132 VVGEGRDNFGVFISW-----DSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 186

Query: 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344
                    A                                             + F  
Sbjct: 187 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD-----------RKISCFDG 235

Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
           +     +         Q         D Q  A+   D +I++W+ TT K V  +      
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295

Query: 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458
           +   +  +                         + + R++ S S D TL  +++
Sbjct: 296 LGNQQVGV-----------------------VATGNGRII-SLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.1 bits (198), Expect = 2e-17
 Identities = 41/319 (12%), Positives = 87/319 (27%), Gaps = 19/319 (5%)

Query: 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDA-RIWDVSLRK--CVICLSGH-TLAVTC 245
           S  + + T +S++P                    R  D    K   V+  +GH +  VT 
Sbjct: 14  STQRNFTTHLSYDPTT-----NAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTT 68

Query: 246 VKW--GGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
           VK+        + +G +   + VW  T  K    ++ +      +       +   ++D 
Sbjct: 69  VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI---SWDF 125

Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
            G++     E +       +   GN+   +   S        + +   +  T       +
Sbjct: 126 EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185

Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422
                         +     S       +                  F+           
Sbjct: 186 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 245

Query: 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS-- 480
                +   +       DS+   +   D+T++VWD+ T K  Q       ++        
Sbjct: 246 DDQEPVQGGIF-ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 304

Query: 481 -PDGEKVASGGKDRVLKLW 498
                ++ S   D  L  +
Sbjct: 305 ATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.8 bits (153), Expect = 1e-11
 Identities = 31/304 (10%), Positives = 61/304 (20%), Gaps = 44/304 (14%)

Query: 98  NRCSATIAGH-TEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQTPMFK--------C 146
                   GH +  V +V FSP    + L SG     V +W                   
Sbjct: 52  VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF 111

Query: 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
                 +  I+W  +G+ L    +  +           +                     
Sbjct: 112 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171

Query: 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266
                           +                   V  V++  D   +  +     K+ 
Sbjct: 172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 231

Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326
                                                                    +  
Sbjct: 232 CFDGKSGEFLKYIEDDQEPV-------------------------------QGGIFALSW 260

Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQ-WVASASFDKSI 384
              ++  +   D T+ +W+   SK  +   +   Q     V     G   + S S D ++
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320

Query: 385 KLWN 388
             + 
Sbjct: 321 NFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 436 SWSADSRLLLSGSKDST-LKVWDIRTQKLK--QDLPGH-ADEVFAVDWSP--DGEKVASG 489
           S+   +  +      S  ++  D    K+       GH +  V  V +SP    + + SG
Sbjct: 24  SYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG 83

Query: 490 GKDRVLKLWM 499
            +   + +W 
Sbjct: 84  DESGKVIVWG 93

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 86.9 bits (214), Expect = 6e-19
 Identities = 44/387 (11%), Positives = 99/387 (25%), Gaps = 48/387 (12%)

Query: 114 VAFSPDGRQLA--SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA 171
                D   L   +      + L D +++  +         V     SA G++L+   + 
Sbjct: 24  QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRD 82

Query: 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR- 230
             +   D    +P+             +                A       I D     
Sbjct: 83  ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142

Query: 231 -KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA- 288
            K ++   G T+                S +    +    +   +  +        ++  
Sbjct: 143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 202

Query: 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348
           +     L  G +D + + + +            +K                 + + +   
Sbjct: 203 IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK----------DRRLSALVDVGKTPH 252

Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
             +    +      V       DG      +  K+   +     K VA  +G  G    I
Sbjct: 253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AWKKVAELQGQGGGSLFI 309

Query: 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--- 465
           +        +P + +  VD +                      ++ V+D++    K    
Sbjct: 310 KT-------HPKSSHLYVDTT-------------FNPDARISQSVAVFDLKNLDAKYQVL 349

Query: 466 ------DLPGHADEVFAVDWSPDGEKV 486
                 DL   A  V   +++  G++V
Sbjct: 350 PIAEWADLGEGAKRVVQPEYNKRGDEV 376

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 74.6 bits (182), Expect = 6e-15
 Identities = 49/397 (12%), Positives = 97/397 (24%), Gaps = 65/397 (16%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNW 152
            +    I     AV     S  GR L     D  + + DL  + P            ++ 
Sbjct: 52  KKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110

Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR 212
                   + ++ ++G+                   +S     +   ++ P     P   
Sbjct: 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP----EPRVA 166

Query: 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVT-CVKWGGDGVIYTGSQDCTIKVWETTQG 271
            + AS +    I +V     V+ ++   +        G    +  G  D + + + T   
Sbjct: 167 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAA- 225

Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
                     +  N +A+      R  A    GK                       P  
Sbjct: 226 ----------NNSNKVAVIDSKDRRLSALVDVGKTPHP-------GRGANFVHPKYGPVW 268

Query: 332 LVSGSDDFTMFLWE------PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA-------SA 378
             S   D ++ L        P  + +    + G       +   P    +         A
Sbjct: 269 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 328

Query: 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438
              +S+ +++                                    VV          ++
Sbjct: 329 RISQSVAVFDLKNLDAKYQVLPIAEWA-----------DLGEGAKRVVQP-------EYN 370

Query: 439 ADSRLLL-----SGSKDSTLKVWDIRTQKLKQDLPGH 470
                +        +  S L V D +T KLK  +   
Sbjct: 371 KRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 407

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 58.0 bits (139), Expect = 1e-09
 Identities = 35/359 (9%), Positives = 88/359 (24%), Gaps = 61/359 (16%)

Query: 156 IAWSADGKHL--VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
                D  +L  V+   AG++   D  + K         K   TG +     ++A  R  
Sbjct: 24  QLNDLDLPNLFSVTLRDAGQIALVDGDSKKI-------VKVIDTGYAVHISRMSASGRYL 76

Query: 214 VSASKDGDARIWDVSLRKC-----VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVW 266
           +   +D    + D+  ++      +          +    G +    I          + 
Sbjct: 77  LVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 136

Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326
           +    +  + +   G  V++     E  +      H                        
Sbjct: 137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH------------------------ 172

Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
             PE +V+  +   + L              G    +    +    ++  +A+ + +   
Sbjct: 173 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVA 232

Query: 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446
              +  + ++         +  R                      +   S   D  + L 
Sbjct: 233 VIDSKDRRLSALVDVGKTPHPGRGANFVH-----------PKYGPVWSTSHLGDGSISLI 281

Query: 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA-------SGGKDRVLKLW 498
           G+       +     K   +L G       +   P    +             + + ++
Sbjct: 282 GTDPKNHPQYAW---KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF 337

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.6 bits (117), Expect = 5e-07
 Identities = 17/142 (11%), Positives = 32/142 (22%), Gaps = 35/142 (24%)

Query: 365 HVYFSPDGQW--VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422
                 D       +      I L +G + K V V        +  R             
Sbjct: 23  KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRM------------ 69

Query: 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-----QDLPGHADEVFAV 477
                          SA  R LL   +D+ + + D+  ++       +          + 
Sbjct: 70  ---------------SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK 114

Query: 478 DWSPDGEKVASGGKDRVLKLWM 499
               +     +G         M
Sbjct: 115 FKGYEDRYTIAGAYWPPQFAIM 136

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 85.6 bits (211), Expect = 1e-18
 Identities = 52/400 (13%), Positives = 100/400 (25%), Gaps = 67/400 (16%)

Query: 98  NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNW 152
                 +     AV     S  GR L     D  V + DL  + P         +  ++ 
Sbjct: 52  YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110

Query: 153 VLCIAWSADGKHL-VSGSKAGELQCWDPQTGKP-----SGNPLSGHKKWITGISWEPVHL 206
                   + K+         +    D +T +P     +       +++        +  
Sbjct: 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 170

Query: 207 NAPCRRFVSASKD-GDARIWDVSLRKCVICLSGHTLAVT-CVKWGGDG--VIYTGSQDCT 262
           +     F+   K+ G   + D +    +                 G     I   +    
Sbjct: 171 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 230

Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG---AFDHTGKQYSS-----PEEMK 314
           + V +T +GKL+      G   +    +       G   A  H G    +     PE   
Sbjct: 231 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 290

Query: 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW 374
             A +  +         L   +   + +L+           +    ++   V    D + 
Sbjct: 291 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVD-------ATLNPEAEISGSVAV-FDIKA 342

Query: 375 VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL 434
           +     D   K          A        V Q  F                        
Sbjct: 343 MTGDGSDPEFKTLPIAEW---AGITEGQPRVVQGEF------------------------ 375

Query: 435 YSWSADSRLLL-----SGSKDSTLKVWDIRTQKLKQDLPG 469
              + D   +         ++S L V D +T +LK  +  
Sbjct: 376 ---NKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 412

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 76.8 bits (188), Expect = 1e-15
 Identities = 45/401 (11%), Positives = 98/401 (24%), Gaps = 70/401 (17%)

Query: 114 VAFSPDGRQL--ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA 171
                D   L   +      + L D +T             V     SA G++L    + 
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRD 82

Query: 172 GELQCWDPQTGKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227
           G++   D    +P+        S  +   T                  A       I D 
Sbjct: 83  GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK----YAIAGAYWPPQYVIMDG 138

Query: 228 SLRKCVICLSGHTLAVTCVKWGGDGV-------------IYTGSQDCTIKVWETTQGKLI 274
              +     S   +     ++  +               I    +   I + + T    +
Sbjct: 139 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL 198

Query: 275 RELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333
           +  +     +++   L   +     A +   K      +  K         +   P R  
Sbjct: 199 KTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA 258

Query: 334 ------SGSDDFTMFLWEPAVS--KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
                  G    T  + + +V+           +   +   + +  G  +   +   S  
Sbjct: 259 NFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY 318

Query: 386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL 445
           L+   T    A                              ++S  ++++    D + + 
Sbjct: 319 LYVDATLNPEA------------------------------EISGSVAVF----DIKAMT 344

Query: 446 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV 486
               D   K   I        +      V   +++ DG +V
Sbjct: 345 GDGSDPEFKTLPIAE---WAGITEGQPRVVQGEFNKDGTEV 382

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.6 bits (159), Expect = 4e-12
 Identities = 39/353 (11%), Positives = 89/353 (25%), Gaps = 64/353 (18%)

Query: 156 IAWSADGKHL--VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
                D ++L  V+   AG++   D  T +             TG +     L+A  R  
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIK-------TVLDTGYAVHISRLSASGRYL 76

Query: 214 VSASKDGDARIWDVSLRKC-----VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVW 266
               +DG   + D+ +++      +   S      T    G +    I          + 
Sbjct: 77  FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326
           +    +  +     G   +      E  +      H                        
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR---------------------- 174

Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
             PE +V+  +   + L +       KT     ++ ++        ++  +A+  ++  +
Sbjct: 175 --PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLV 232

Query: 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446
              T    +       G          +                             + +
Sbjct: 233 VIDTKEGKLVAIEDTGGQTPHPGRGANF----------------------VHPTFGPVWA 270

Query: 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499
            S      V  I T    +  P +A ++     +  G  +          L++
Sbjct: 271 TSHMGDDSVALIGTDP--EGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV 321

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (115), Expect = 9e-07
 Identities = 14/136 (10%), Positives = 30/136 (22%), Gaps = 35/136 (25%)

Query: 364 NHVYFSPDGQW--VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN 421
                  D +     +      I L +G+T +   V        +  R            
Sbjct: 22  TQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRL----------- 69

Query: 422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-----GHADEVFA 476
                           SA  R L    +D  + + D+  ++                  +
Sbjct: 70  ----------------SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113

Query: 477 VDWSPDGEKVASGGKD 492
                + +   +G   
Sbjct: 114 KMEGWEDKYAIAGAYW 129

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 68.0 bits (164), Expect = 4e-13
 Identities = 35/289 (12%), Positives = 76/289 (26%), Gaps = 16/289 (5%)

Query: 125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGK 183
           + S    + + D+ +           N  +    S DG  + V+ + + ++   D  T  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV 243
                 +G       +S +   +        + S             K      G     
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGL---- 121

Query: 244 TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGH-------WVNSLALSTEYALR 296
             +   G  +  T + D T+ V  T    +I  +               +      +   
Sbjct: 122 -ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSM 180

Query: 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM 356
           + +   T           +AA              + +    F         + +   R+
Sbjct: 181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240

Query: 357 TGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGKFVAVFRGHVGP 404
                    +  +PDG+ V  + SF  ++ + +  T    A       P
Sbjct: 241 PVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 53.0 bits (125), Expect = 3e-08
 Identities = 29/280 (10%), Positives = 73/280 (26%), Gaps = 25/280 (8%)

Query: 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ 270
           +++ S+  +  + DV+  K    +   +          DG  V    +    + + +T  
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK----IKG 326
             +I  +                 +       +            A   +  K    +  
Sbjct: 64  NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123

Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
           +   + +  +++    +       +         +    +  +PDG  V  A+FD     
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183

Query: 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS---------- 436
              T    V            I         Y +N     +    +   +          
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243

Query: 437 -------WSAD-SRLLLSGSKDSTLKVWDIRTQKLKQDLP 468
                   + D  ++ ++ S  +T+ V D  T  +   + 
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.2 bits (97), Expect = 8e-05
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 446 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 498
           + S+   + V D+ + K+   +P           SPDG KV  +      + + 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSII 59

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 31/306 (10%), Positives = 64/306 (20%), Gaps = 24/306 (7%)

Query: 106 GHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNW---VLCIAWSAD 161
                V  +  SPD R L      +  V  + +                  +  I+    
Sbjct: 34  DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ 93

Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
           G+             +       + +          G+      L+       + S D  
Sbjct: 94  GQF-----------VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGC--HSANISPDNR 140

Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
                   +  +   +         +   +     G+    +      Q           
Sbjct: 141 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS 200

Query: 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
             V  L             D   + +S         +    +            +   T+
Sbjct: 201 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH----LYACDRTASLITV 256

Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLW--NGTTGKFVAVF 398
           F      S   K      +           G+++ +A      I ++   G  G      
Sbjct: 257 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 316

Query: 399 RGHVGP 404
           R  VG 
Sbjct: 317 RYAVGQ 322

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 18/293 (6%), Positives = 66/293 (22%), Gaps = 16/293 (5%)

Query: 213 FVSASKDGDARIWDVSLRKC--VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWET 268
           ++++ +     +W+++      +  +      V  +    D   +      +  +  +  
Sbjct: 7   YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66

Query: 269 TQGKLIRELKGHGHWVNS---LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
                            S   ++   +         + G    +  E             
Sbjct: 67  APDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 126

Query: 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
            +         D+ T+++      +     ++        V   P        +  + + 
Sbjct: 127 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH---LVAQDPAEVTTVEGAGPRHMV 183

Query: 386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD---SR 442
                   +          V++++          +      + S                
Sbjct: 184 FHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 243

Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHA---DEVFAVDWSPDGEKVASGGKD 492
           L       S + V+ +          G      +    +    G+ + + G+ 
Sbjct: 244 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK 296

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 43/348 (12%), Positives = 74/348 (21%), Gaps = 77/348 (22%)

Query: 93  RIRPVNRCSATIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTP--------- 142
            I   ++       H   +       DG+ L  +   +T V    L+             
Sbjct: 56  EILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV 115

Query: 143 ------MFKCTGHKNWVLC-----IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG 191
                   +     N+V C     I    DG      +        D +T   +   +  
Sbjct: 116 QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD 175

Query: 192 HKK-----------------------WITGISWEPVH----LNAPCRRFVSASKDGDAR- 223
                                      + G            N    R  +A K G+ + 
Sbjct: 176 GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE--RIAAAVKAGNFKT 233

Query: 224 --------IWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLI 274
                   +      +    +                     G    T+ V      KL 
Sbjct: 234 IGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAID--KLD 291

Query: 275 RELKGHGHWVNSLALSTE---YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
              +      +++    E     L T  FD  G  Y++        ++        A   
Sbjct: 292 DLFEDKIELRDTIVAEPELGLGPLHT-TFDGRGNAYTT------LFIDSQVCKWNIADAI 344

Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
                D            K       GH           DG+W+   S
Sbjct: 345 KHYNGDR-----VNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 18/86 (20%)

Query: 103 TIAGHTE---AVLSVAFSPDGRQLASGSGDTTVRLWDLNT---------------QTPMF 144
           TI    E     L   F   G    +   D+ V  W++                 +  + 
Sbjct: 303 TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ 362

Query: 145 KCTGHKNWVLCIAWSADGKHLVSGSK 170
              GH +  L  +  ADGK LV  SK
Sbjct: 363 YQPGHNHASLTESRDADGKWLVVLSK 388

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 46/399 (11%), Positives = 101/399 (25%), Gaps = 60/399 (15%)

Query: 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGE 173
            F+ D      G  + +  +  L           H   +       DGK+L ++      
Sbjct: 39  VFNVDSAT-GWGITNESKEI--LGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTR 95

Query: 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV 233
           +        K        + + I G+                  K              V
Sbjct: 96  VARIRLDIMKTDKITHIPNVQAIHGLRL---------------QKVPK--------TNYV 132

Query: 234 ICLSGHTLAVTCVKWGGDGVIYT-GSQDCTIKVWETTQGKLIRELKGHG--HWVNSLALS 290
            C +   +         DG  ++  +        +     +  ++   G          +
Sbjct: 133 FCNAEFVIPQ-----PNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNT-DADYT 186

Query: 291 TEYALRTGAFDHTGKQY--SSPEEMKKAALERYNKI-KGNAPERLVSGSDDFTMFLWEPA 347
            +YA  T            +   +     +    +I          +  D     +    
Sbjct: 187 GKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG 246

Query: 348 VSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406
            S+  +          + +  SPDG+ ++A+     ++ +      K   +F   +    
Sbjct: 247 ESEFTRYIPVPKN--PHGLNTSPDGKYFIANGKLSPTVSVIA--IDKLDDLFEDKIELRD 302

Query: 407 QIRFE-----LIYCFRYPSNFYCVVDMSCCMSLYSWSAD-SRLLLSGSK-DSTLKVWDIR 459
            I  E           +         +     +  W+   +    +G + +   +  D++
Sbjct: 303 TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ 362

Query: 460 TQKLKQDLPGHADEVFAVDWSPDGEKVASGGK---DRVL 495
            Q      PGH           DG+ +    K   DR L
Sbjct: 363 YQ------PGHNHASLTESRDADGKWLVVLSKFSKDRFL 395

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 46/376 (12%), Positives = 84/376 (22%), Gaps = 93/376 (24%)

Query: 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224
             SG   GE++        PS   L      I   +                  +    I
Sbjct: 14  FWSGGHQGEVRVLGV----PSMREL----MRIPVFN--------VDSATGWGITNESKEI 57

Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELK-GHG 281
                +   +    H   ++      DG  +      +  +        K  +     + 
Sbjct: 58  LGGDQQ--YLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV 115

Query: 282 HWVNSLALS----TEYAL----RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333
             ++ L L     T Y            + G  +S                         
Sbjct: 116 QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM-----------------F 158

Query: 334 SGSDDFTMF-LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392
           +  D  TM   W+  V               ++      G++  S  ++    +    T 
Sbjct: 159 TAIDAETMDVAWQVIVDGNL-----------DNTDADYTGKYATSTCYNSERAVDLAGTM 207

Query: 393 ----KFVAVFRGHVGPVY--QIRFELIYCFRYPSNFYCVVDMSCCMSL------------ 434
                +V VF             F+ I       +   VVD                   
Sbjct: 208 RNDRDWVVVFNVERIAAAVKAGNFKTI-----GDSKVPVVDGRGESEFTRYIPVPKNPHG 262

Query: 435 -YSWSADSRLLLSGSKDSTLKVWDIRT-QKLKQDLPGHADEVFA----------VDWSPD 482
             +       + +G    T+ V  I     L +D     D + A            +   
Sbjct: 263 LNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGR 322

Query: 483 GEKVASGGKDRVLKLW 498
           G    +   D  +  W
Sbjct: 323 GNAYTTLFIDSQVCKW 338

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 5/172 (2%)

Query: 113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG 172
           ++A +PDG    +      +     +    +      +  V  +A++++G  + +G  A 
Sbjct: 32  NLASAPDGTIFVTNHEVGEIVSITPDGNQQIH--ATVEGKVSGLAFTSNGDLVATGWNAD 89

Query: 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
            +          +             I    +   +  +   + S  G   + DV     
Sbjct: 90  SIPVVSLVKSDGTVET---LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 146

Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
            I L    LA +  +               + V  T +  L+R         
Sbjct: 147 SIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKP 198

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 34/247 (13%), Positives = 65/247 (26%), Gaps = 15/247 (6%)

Query: 103 TIAGHTEAVLSVAFSPDGRQLA--SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA 160
            +    + ++S A+SPDG +LA  +     +  +        + +           A+S 
Sbjct: 33  VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 92

Query: 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
           DG  L                     +            + EP           ++ + G
Sbjct: 93  DGSKLAFALSKTGSLNLYVMDLA---SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG 149

Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGH 280
             +++ V++                   G        S D    V  ++ G      K  
Sbjct: 150 RPQVYKVNINGGAPQR--------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 201

Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQ-YSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339
                   LS+ +   T +    G     S  +   + L   +   G    RL +     
Sbjct: 202 LATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS-TDGRFKARLPATDGQV 260

Query: 340 TMFLWEP 346
               W P
Sbjct: 261 KFPAWSP 267

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 39/403 (9%), Positives = 97/403 (24%), Gaps = 49/403 (12%)

Query: 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTV---------RLWDLNTQTPMFKCTGHKN 151
           ++T      ++   + SPDG+ +                   ++DLN +  + +     N
Sbjct: 54  NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-ERIPN 112

Query: 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
               + WS  G   ++     ++               +G +  I     + V+      
Sbjct: 113 NTQWVTWSPVGHK-LAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171

Query: 212 RFVSA--SKDGDARIWDVSLRKCV-----ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK 264
            + +   S +G    +       V        S  +L                +      
Sbjct: 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF 231

Query: 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324
           V  T     +           +  L  ++ L    +    +         +         
Sbjct: 232 VVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDIC- 290

Query: 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
                      S  +   +    +       +   +    H     +  +   ++ +   
Sbjct: 291 ------DYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYR 344

Query: 385 KLW----NGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440
            +     +     F+      V  +  +  + +Y             M    +LY     
Sbjct: 345 HICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYK-----GMPGGRNLYKIQ-- 397

Query: 441 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
               LS     T          L  +L     + ++V +S + 
Sbjct: 398 ----LSDYTKVTC---------LSCELNPERCQYYSVSFSKEA 427

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	500
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.68
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.52
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.51
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.47
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.39
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.06
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.93
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.83
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.68
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.66
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.64
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.64
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.62
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.61
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.6
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.59
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.42
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.34
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.29
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.23
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.14
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.07
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.84
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.67
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.03
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.02
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.01
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.98
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.89
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.58
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.84
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.29
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.79
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.13
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.63
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.73
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	89.73
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	88.57
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	87.99
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	87.91
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	85.44
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	84.93
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	84.21
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	83.81
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	81.77
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	80.42

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-44  Score=336.57  Aligned_cols=309  Identities=28%  Similarity=0.442  Sum_probs=267.8

Q ss_pred             cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816           99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus        99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      ....+|.||+++|++|+|+|++++||||+.||+|+|||+.+++.+..+.+|...|.+++|+|++.++++++.++.+..|+
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence            34457899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEE
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG  257 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~  257 (500)
                      ....+.. ..+.+|...+..+.|.|     +...+++++.|+.+++||+++++.+..+.+|...+.++.|++++ .|+++
T Consensus        88 ~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  161 (317)
T d1vyhc1          88 FQGFECI-RTMHGHDHNVSSVSIMP-----NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC  161 (317)
T ss_dssp             TTSSCEE-ECCCCCSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccc-cccccccccceeeeccC-----CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEE
Confidence            8776543 34667888888888876     44689999999999999999999999999999999999999876 68889


Q ss_pred             eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      +.|+.|++|+..+++....+..+...+.++.+.+........                                      
T Consensus       162 ~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------------------------------------  203 (317)
T d1vyhc1         162 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS--------------------------------------  203 (317)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGG--------------------------------------
T ss_pred             eCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceee--------------------------------------
Confidence            999999999999999999999998888888877653110000                                      


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                                           .........+..++.++++++.|+.|++||..+++++..+.+|..++.++         
T Consensus       204 ---------------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~---------  253 (317)
T d1vyhc1         204 ---------------------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV---------  253 (317)
T ss_dssp             ---------------------GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE---------
T ss_pred             ---------------------ccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEE---------
Confidence                                 00001122334567889999999999999999999999999999998877         


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL  497 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i  497 (500)
                                        +|+|++++|++|+.||.|++||+++++.+..+.+|.+.|++++|+|++++|+|||.||+|+|
T Consensus       254 ------------------~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~i  315 (317)
T d1vyhc1         254 ------------------LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  315 (317)
T ss_dssp             ------------------EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             ------------------EECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence                              56899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ec
Q 010816          498 WM  499 (500)
Q Consensus       498 W~  499 (500)
                      |+
T Consensus       316 Wd  317 (317)
T d1vyhc1         316 WE  317 (317)
T ss_dssp             EC
T ss_pred             eC
Confidence            96

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-42  Score=325.50  Aligned_cols=279  Identities=21%  Similarity=0.416  Sum_probs=240.4

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce-----eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-----MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~-----~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      +|...|.+++|+|+|++||||+ ||.|+|||+.+...     .....+|.+.|.+++|+||+++|++|+.|++|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            7999999999999999999987 89999999975432     23345899999999999999999999999999999987


Q ss_pred             CCCc-ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816          181 TGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (500)
Q Consensus       181 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~  258 (500)
                      .... ....+..|...+..+.|+|     +...+++++.|+.+++||+.++++.....+|...|.+++|++++ .+++++
T Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~  202 (337)
T d1gxra_         128 APTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5432 2234567888888888876     44689999999999999999999999999999999999999876 688899


Q ss_pred             CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      .|+.+++||+++++.+..+                                                             
T Consensus       203 ~d~~v~i~d~~~~~~~~~~-------------------------------------------------------------  221 (337)
T d1gxra_         203 LDNTVRSWDLREGRQLQQH-------------------------------------------------------------  221 (337)
T ss_dssp             TTSEEEEEETTTTEEEEEE-------------------------------------------------------------
T ss_pred             ccccccccccccceeeccc-------------------------------------------------------------
Confidence            9999999999876543221                                                             


Q ss_pred             CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816          339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY  418 (500)
Q Consensus       339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  418 (500)
                                         .|...|.+++|+|++++|++|+.|+.|++||+.+++.. ....|...|.++          
T Consensus       222 -------------------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v----------  271 (337)
T d1gxra_         222 -------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL----------  271 (337)
T ss_dssp             -------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE----------
T ss_pred             -------------------ccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceE----------
Confidence                               23456889999999999999999999999999988765 456788888777          


Q ss_pred             CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                                       +|+|++++|++|+.|+.|++||+.+++.+..+ +|.+.|++++|+|++++|++||.|++|+||
T Consensus       272 -----------------~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vW  333 (337)
T d1gxra_         272 -----------------KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             -----------------EECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             -----------------EECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence                             56999999999999999999999998887765 478899999999999999999999999999


Q ss_pred             c
Q 010816          499 M  499 (500)
Q Consensus       499 ~  499 (500)
                      +
T Consensus       334 d  334 (337)
T d1gxra_         334 E  334 (337)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-42  Score=328.68  Aligned_cols=288  Identities=31%  Similarity=0.514  Sum_probs=234.5

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec------------------CCCCCEEEEEEcCCCCEEEE
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------------------GHKNWVLCIAWSADGKHLVS  167 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~------------------~h~~~v~~v~~s~~~~~l~s  167 (500)
                      +|++.|+||+|+|||++||+|+ |++|+|||+.++..+..+.                  +|...|.+++|+|++++|++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            6999999999999999999986 8999999998877665443                  46777999999999999999


Q ss_pred             EeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 010816          168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK  247 (500)
Q Consensus       168 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~  247 (500)
                      |+.||.|++||...++... ...+|...|.++.|.+     +...+++++.++.+++||.++.........+...+....
T Consensus       139 ~~~dg~v~i~~~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  212 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFP-----SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV  212 (388)
T ss_dssp             EETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             ccccccccccccccccccc-cccccccccccccccc-----ccccccccccceeeeeeeccccccccccccccccccccc
Confidence            9999999999998876543 4678999999998875     445789999999999999999988887777766665555


Q ss_pred             eCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816          248 WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG  326 (500)
Q Consensus       248 ~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (500)
                      +..++ .|++|+.|+.|++||..++.....+..                                               
T Consensus       213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-----------------------------------------------  245 (388)
T d1erja_         213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS-----------------------------------------------  245 (388)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------------------------------------
T ss_pred             cCCCCCeEEEEcCCCeEEEeecccCccceeecc-----------------------------------------------
Confidence            55554 688899999999999988765543321                                               


Q ss_pred             CCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEE----------
Q 010816          327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA----------  396 (500)
Q Consensus       327 ~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~----------  396 (500)
                                               ......+|...|.+++|+|++++|++|+.||.|++||+.+++...          
T Consensus       246 -------------------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  300 (388)
T d1erja_         246 -------------------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC  300 (388)
T ss_dssp             ------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CE
T ss_pred             -------------------------ccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccce
Confidence                                     011234678889999999999999999999999999998765432          


Q ss_pred             --EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCE
Q 010816          397 --VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV  474 (500)
Q Consensus       397 --~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V  474 (500)
                        ....|...+                           ..++|+|++++|++|+.||.|++||+++++.+..+.+|.+.|
T Consensus       301 ~~~~~~~~~~v---------------------------~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V  353 (388)
T d1erja_         301 EVTYIGHKDFV---------------------------LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV  353 (388)
T ss_dssp             EEEEECCSSCE---------------------------EEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             eeecccccceE---------------------------EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCE
Confidence              222333333                           334789999999999999999999999999999999999999


Q ss_pred             EEEEE------cCCCCEEEEEeCCCcEEEec
Q 010816          475 FAVDW------SPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       475 ~~l~~------s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +++++      +|++++|||||.||+|+||+
T Consensus       354 ~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~  384 (388)
T d1erja_         354 ISVAVANGSSLGPEYNVFATGSGDCKARIWK  384 (388)
T ss_dssp             EEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             EEEEEecCcccCCCCCEEEEEeCCCEEEEEe
Confidence            99874      67899999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.5e-41  Score=314.39  Aligned_cols=291  Identities=27%  Similarity=0.448  Sum_probs=242.3

Q ss_pred             cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      .++|.||.++|++++|+|++++||||+.||+|+|||+.++..+..+.+|..+|.+++|+|+++++++|+.|+.+++|+..
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCC
Q 010816          181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD  260 (500)
Q Consensus       181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~d  260 (500)
                      ......                                            .....+.+|...........+..+.....|
T Consensus       128 ~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (340)
T d1tbga_         128 TREGNV--------------------------------------------RVSRELAGHTGYLSCCRFLDDNQIVTSSGD  163 (340)
T ss_dssp             SSCSCC--------------------------------------------CEEEEECCCSSCEEEEEEEETTEEEEEETT
T ss_pred             cccccc--------------------------------------------ccceeccccccccccccccccccccccccc
Confidence            442211                                            001122345444555555556677888899


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      .....++............+...+......+.                                    ...+++|+.|+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~d~~  207 (340)
T d1tbga_         164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPD------------------------------------TRLFVSGACDAS  207 (340)
T ss_dssp             TEEEEEETTTTEEEEEEECCSSCEEEEEECTT------------------------------------SSEEEEEETTTE
T ss_pred             ccccccccccccccccccccceeEeeeccccc------------------------------------cceeEEeecCce
Confidence            99999988877666666666666655554432                                    357899999999


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe--CCcccEEEEEeeeeeeecC
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQIRFELIYCFRY  418 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~  418 (500)
                      +++||.... .....+.+|...|++++|+|++++|++|+.||.|++||+...+.+..+.  .|..++..+          
T Consensus       208 v~i~d~~~~-~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----------  276 (340)
T d1tbga_         208 AKLWDVREG-MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV----------  276 (340)
T ss_dssp             EEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE----------
T ss_pred             EEEEECCCC-cEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE----------
Confidence            999997653 3455678899999999999999999999999999999999988776654  334445444          


Q ss_pred             CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                                       +|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+||+++|+|||.||+|+||
T Consensus       277 -----------------~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         277 -----------------SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             -----------------EECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             -----------------EECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence                             679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 010816          499 M  499 (500)
Q Consensus       499 ~  499 (500)
                      +
T Consensus       340 d  340 (340)
T d1tbga_         340 N  340 (340)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-40  Score=309.21  Aligned_cols=279  Identities=22%  Similarity=0.382  Sum_probs=236.7

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc-
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS-  185 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~-  185 (500)
                      +.+.+..++++|+|+.||.++ ++.|.+||+.+......+.+|...|.+++|+|+|++|++|+.||+|++||+.++... 
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence            455667889999999999986 557999999998888888999999999999999999999999999999999887643 


Q ss_pred             cccccCcccceEEEEeeeeecCCCCceEEEEeC--CCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--eEEEEeCCC
Q 010816          186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDC  261 (500)
Q Consensus       186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~--dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg  261 (500)
                      ...+.+|...|.++.|+|     ++..+++++.  ++.+++|++.+++....+.+|...|++++|++++  .+++|+.|+
T Consensus        95 ~~~~~~~~~~v~~v~~s~-----d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~  169 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDS-----ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN  169 (311)
T ss_dssp             EEEEECSSSCEEEEEECT-----TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred             ccccccccCccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            234678999999999987     4457888875  4669999999999888899999999999999876  478899999


Q ss_pred             eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816          262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM  341 (500)
Q Consensus       262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v  341 (500)
                      .|++||+++++....                                                                 
T Consensus       170 ~i~i~d~~~~~~~~~-----------------------------------------------------------------  184 (311)
T d1nr0a1         170 TVAIFEGPPFKFKST-----------------------------------------------------------------  184 (311)
T ss_dssp             CEEEEETTTBEEEEE-----------------------------------------------------------------
T ss_pred             ccccccccccccccc-----------------------------------------------------------------
Confidence            999999887543321                                                                 


Q ss_pred             EEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe-------CCcccEEEEEeeeee
Q 010816          342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-------GHVGPVYQIRFELIY  414 (500)
Q Consensus       342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~  414 (500)
                                    ..+|...|+++.|+|++++|++++.|+.|++||..+++.+..+.       +|.++|+++      
T Consensus       185 --------------~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~------  244 (311)
T d1nr0a1         185 --------------FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL------  244 (311)
T ss_dssp             --------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE------
T ss_pred             --------------cccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccc------
Confidence                          22466779999999999999999999999999999988777664       466677666      


Q ss_pred             eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCccc---CEEEEEEcCCCCEEEEEeC
Q 010816          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD---EVFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~---~V~~l~~s~dg~~l~s~~~  491 (500)
                                           +|+|++++|++|+.||.|+|||++++++++.+..|..   .+.++.|+  ++.|++++.
T Consensus       245 ---------------------~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~--~~~l~s~s~  301 (311)
T d1nr0a1         245 ---------------------TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSISA  301 (311)
T ss_dssp             ---------------------EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC--SSCEEEEET
T ss_pred             ---------------------ccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec--CCEEEEEEC
Confidence                                 6799999999999999999999999999888876643   45666665  467999999


Q ss_pred             CCcEEEec
Q 010816          492 DRVLKLWM  499 (500)
Q Consensus       492 D~~v~iW~  499 (500)
                      ||.|++|+
T Consensus       302 dG~i~~wd  309 (311)
T d1nr0a1         302 NGFINFVN  309 (311)
T ss_dssp             TCCEEEEE
T ss_pred             CCEEEEEe
Confidence            99999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-39  Score=307.01  Aligned_cols=320  Identities=24%  Similarity=0.381  Sum_probs=244.7

Q ss_pred             ccccCCcccE-EEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816          102 ATIAGHTEAV-LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ  180 (500)
Q Consensus       102 ~~~~gh~~~V-~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~  180 (500)
                      .+|.||.+.| +|++  +++++||||+.|++|+|||+.+++++..+.+|.++|.+++|+|+ .+|++|+.|++|++|+..
T Consensus         6 ~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           6 TTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             EEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            4688999886 5555  46889999999999999999999999999999999999999985 589999999999999998


Q ss_pred             CCCccccccc-CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-----------------------e
Q 010816          181 TGKPSGNPLS-GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-----------------------L  236 (500)
Q Consensus       181 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-----------------------~  236 (500)
                      ..+....... .+........+.     .+...+++++.|+.|++||++.......                       .
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEY-----KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEE-----TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             ccccccccccccccccccccccc-----cccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            7754332211 112222222222     2445789999999999999976544322                       1


Q ss_pred             cCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816          237 SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (500)
Q Consensus       237 ~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (500)
                      ..|...+.+.... ...++++..|+.|++||+.+++.+.....+...+.++.+++.                        
T Consensus       158 ~~~~~~v~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  212 (355)
T d1nexb2         158 RGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE------------------------  212 (355)
T ss_dssp             ECCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT------------------------
T ss_pred             eeccccccccccc-cceeeeecccceeeeeecccccceeeeecccccccccccccc------------------------
Confidence            2333444444333 247889999999999999999998888888877877777654                        


Q ss_pred             HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 010816          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA  396 (500)
Q Consensus       317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~  396 (500)
                                  ...+++++.|+.|++||.... .....+.+|...|.+++++  +++|++|+.||.|++||+.++... 
T Consensus       213 ------------~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-  276 (355)
T d1nexb2         213 ------------RKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK-  276 (355)
T ss_dssp             ------------TTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE-
T ss_pred             ------------ceeeecccccceEEeeecccc-ccccccccccccccccccc--cceeeeeeccccccccccccccee-
Confidence                        357899999999999997654 4456678999999999987  478999999999999999887643 


Q ss_pred             EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc-cccCcccCEE
Q 010816          397 VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ-DLPGHADEVF  475 (500)
Q Consensus       397 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~h~~~V~  475 (500)
                       +..|...+..+                          ..++++++++++|+ |+.|+|||+++++++. .+.+|.+.|+
T Consensus       277 -~~~~~~~~~~~--------------------------~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~  328 (355)
T d1nexb2         277 -FSYHHTNLSAI--------------------------TTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIW  328 (355)
T ss_dssp             -EEEECTTCCCC--------------------------CEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEE
T ss_pred             -cccccCCceEE--------------------------EEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEE
Confidence             33444433222                          24577888777765 8999999999998874 5788999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEec
Q 010816          476 AVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       476 ~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +++|+|+ ..+++++.||+++||.
T Consensus       329 ~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         329 SVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEEETT-EEEEEEESSSCEEEEE
T ss_pred             EEEEcCC-eEEEEEECCCcEEEEE
Confidence            9999987 4778899999987763

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-39  Score=302.33  Aligned_cols=318  Identities=26%  Similarity=0.485  Sum_probs=254.5

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      +..+|+||++.|.+ +++++|++||||+.||+|+|||+.+++++..+.+|.+.|.+++|+++  +|++|+.|+.+++|+.
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA   84 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccc
Confidence            45678999999876 47778999999999999999999999999999999999999999874  9999999999999998


Q ss_pred             CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC
Q 010816          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~  259 (500)
                      ....... ....+...+......       ...+..+..|+.+.+|+..+++....+..+........ .....+++++.
T Consensus        85 ~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  155 (342)
T d2ovrb2          85 ETGECIH-TLYGHTSTVRCMHLH-------EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ-YDGRRVVSGAY  155 (342)
T ss_dssp             TTTEEEE-EECCCSSCEEEEEEE-------TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE-ECSSCEEEEET
T ss_pred             cccccee-cccccceeEeeeecc-------cccccccccceeEEEeecccccceeeeecccccceeec-cccceeeeecC
Confidence            7654322 122223333333222       24678899999999999999888777665555444433 33457889999


Q ss_pred             CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (500)
Q Consensus       260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~  339 (500)
                      |+.|++||...++.+..+..|...+......                                      +..+++++.|+
T Consensus       156 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~l~s~~~dg  197 (342)
T d2ovrb2         156 DFMVKVWDPETETCLHTLQGHTNRVYSLQFD--------------------------------------GIHVVSGSLDT  197 (342)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--------------------------------------SSEEEEEETTS
T ss_pred             CCeEEEeecccceeeEEEcCcccccccccCC--------------------------------------CCEEEEEeCCC
Confidence            9999999999998888888887666555432                                      34689999999


Q ss_pred             eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCc---ccEEEEEeeeeeee
Q 010816          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV---GPVYQIRFELIYCF  416 (500)
Q Consensus       340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~  416 (500)
                      .|++||+... .....+.+|...+.+++++  +++|++|+.|+.|++||....+....+.++.   ..+..         
T Consensus       198 ~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------  265 (342)
T d2ovrb2         198 SIRVWDVETG-NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC---------  265 (342)
T ss_dssp             CEEEEETTTC-CEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE---------
T ss_pred             eEEEeecccc-eeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceee---------
Confidence            9999998654 3456678899999988876  4699999999999999999988877776543   33332         


Q ss_pred             cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc-----cCcccCEEEEEEcCCCCEEEEEeC
Q 010816          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-----PGHADEVFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----~~h~~~V~~l~~s~dg~~l~s~~~  491 (500)
                                          ++++++++++|+.||+|++||+++++.++.+     .+|.+.|++++|+|++..|++|+.
T Consensus       266 --------------------~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~  325 (342)
T d2ovrb2         266 --------------------LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR  325 (342)
T ss_dssp             --------------------EEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS
T ss_pred             --------------------cccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeC
Confidence                                2446789999999999999999999887654     467888999999999999999999


Q ss_pred             CCc----EEEec
Q 010816          492 DRV----LKLWM  499 (500)
Q Consensus       492 D~~----v~iW~  499 (500)
                      ||+    |++|+
T Consensus       326 dGt~~~~l~~~D  337 (342)
T d2ovrb2         326 NGTEETKLLVLD  337 (342)
T ss_dssp             SSSSCCEEEEEE
T ss_pred             CCCCeeEEEEEe
Confidence            985    89997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-39  Score=310.50  Aligned_cols=298  Identities=16%  Similarity=0.253  Sum_probs=232.8

Q ss_pred             CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816          107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP  184 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~  184 (500)
                      +.++|+|++|+|||++||+|+.|+.|+|||+.+++  .+..+++|.++|.+++|+|++++|++|+.|++|++||+.++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            35789999999999999999999999999998765  4567889999999999999999999999999999999987653


Q ss_pred             cc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe----EEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816          185 SG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHTLAVTCVKWGGDG-VIYTGS  258 (500)
Q Consensus       185 ~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~-~l~t~~  258 (500)
                      .. ..+.+|...|.++.|.|     +++.|++|+.|+++++|++....    ......+|...|.+++|+|++ .|++|+
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p-----~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s  160 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAP-----NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  160 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECT-----TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccccccc-----ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccc
Confidence            22 23567889999999987     45689999999999999886543    334456889999999999987 588899


Q ss_pred             CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      .|++|++||...+.........                                                          
T Consensus       161 ~D~~v~v~~~~~~~~~~~~~~~----------------------------------------------------------  182 (371)
T d1k8kc_         161 CDFKCRIFSAYIKEVEERPAPT----------------------------------------------------------  182 (371)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCB----------------------------------------------------------
T ss_pred             cCcEEEEEeeccCccccccccc----------------------------------------------------------
Confidence            9999999998654321100000                                                          


Q ss_pred             CeEEEEcCCC-CCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816          339 FTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR  417 (500)
Q Consensus       339 ~~v~~wd~~~-~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  417 (500)
                          .|+... .........+|...|.+++|+|+|++|++++.|+.|++||+.+++.+..+.+|..+|.++         
T Consensus       183 ----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~---------  249 (371)
T d1k8kc_         183 ----PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV---------  249 (371)
T ss_dssp             ----TTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE---------
T ss_pred             ----cccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceee---------
Confidence                000000 011223345788899999999999999999999999999999999999999999999887         


Q ss_pred             CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC--Ccccc-------------------------------
Q 010816          418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR--TQKLK-------------------------------  464 (500)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~--~~~~~-------------------------------  464 (500)
                                        +|+|++++|++|+ |+.+++|+..  .+...                               
T Consensus       250 ------------------~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (371)
T d1k8kc_         250 ------------------TFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS  310 (371)
T ss_dssp             ------------------EEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--
T ss_pred             ------------------eecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEE
Confidence                              5688998887655 6766665432  21100                               


Q ss_pred             --------ccccCcccCEEEEEEcCCC----CEEEEEeCCCcEEEec
Q 010816          465 --------QDLPGHADEVFAVDWSPDG----EKVASGGKDRVLKLWM  499 (500)
Q Consensus       465 --------~~~~~h~~~V~~l~~s~dg----~~l~s~~~D~~v~iW~  499 (500)
                              .....|.+.|+++++.+.+    ..|+|+|.||+|+||+
T Consensus       311 ~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         311 EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             -------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             eccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence                    0012488899999997754    3689999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.8e-39  Score=294.96  Aligned_cols=285  Identities=19%  Similarity=0.259  Sum_probs=201.2

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      ..+++.||.++|++++|+|++++||||+.||+|++||+++++++..+ .+|...|.+++|+|++. +++++.|+.+++|+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence            34578899999999999999999999999999999999998887766 47999999999999986 55677899999999


Q ss_pred             CCCCCcccc--cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEE
Q 010816          179 PQTGKPSGN--PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT  256 (500)
Q Consensus       179 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t  256 (500)
                      .........  ....+.                                               ..+.++.|++++.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~s~~g~~~~  115 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLS-----------------------------------------------SQPLGLAVSADGDIAV  115 (299)
T ss_dssp             SSSSSSCTTSCCEEECS-----------------------------------------------SCEEEEEECTTSSCEE
T ss_pred             cCCcccccccccccccc-----------------------------------------------cccccccccccccccc
Confidence            764332110  111222                                               2334445555554444


Q ss_pred             EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816          257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS  336 (500)
Q Consensus       257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  336 (500)
                      ++.++.+++|+..  +.....  ....+.+++++++                                    +..+++|+
T Consensus       116 ~~~~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~------------------------------------~~~l~~g~  155 (299)
T d1nr0a2         116 AACYKHIAIYSHG--KLTEVP--ISYNSSCVALSND------------------------------------KQFVAVGG  155 (299)
T ss_dssp             EEESSEEEEEETT--EEEEEE--CSSCEEEEEECTT------------------------------------SCEEEEEE
T ss_pred             ccccccccccccc--cccccc--ccccccccccccc------------------------------------cccccccc
Confidence            4445555555532  111111  1122333333332                                    23455555


Q ss_pred             CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE---EEEeCCcccEEEEEeeee
Q 010816          337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV---AVFRGHVGPVYQIRFELI  413 (500)
Q Consensus       337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~---~~~~~h~~~v~~~~~~~~  413 (500)
                      .|+.+++||+............|...|++++|+|++++|++++.|+.|++||+.++..+   ..+.+|..+|.++     
T Consensus       156 ~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l-----  230 (299)
T d1nr0a2         156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV-----  230 (299)
T ss_dssp             TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE-----
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----
Confidence            66666666554332222334568889999999999999999999999999999887654   3456788888776     


Q ss_pred             eeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc--cccC-cccCEEEEEEcCCCCEEEEEe
Q 010816          414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLPG-HADEVFAVDWSPDGEKVASGG  490 (500)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~~-h~~~V~~l~~s~dg~~l~s~~  490 (500)
                                            +|+|++.+|++|+.|+.|++||++++....  .... +...|.++.| +++++|++||
T Consensus       231 ----------------------~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s  287 (299)
T d1nr0a2         231 ----------------------SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAG  287 (299)
T ss_dssp             ----------------------EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEE
T ss_pred             ----------------------cccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEe
Confidence                                  679999999999999999999998765432  2223 4456777765 5578999999


Q ss_pred             CCCcEEEecC
Q 010816          491 KDRVLKLWMG  500 (500)
Q Consensus       491 ~D~~v~iW~~  500 (500)
                      .|++|++|+.
T Consensus       288 ~D~~i~iWdl  297 (299)
T d1nr0a2         288 QDSNIKFWNV  297 (299)
T ss_dssp             TTSCEEEEEC
T ss_pred             CCCEEEEEec
Confidence            9999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.9e-37  Score=284.83  Aligned_cols=257  Identities=23%  Similarity=0.287  Sum_probs=214.2

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee--EEecCCCCCEEEEEEcCCCCEEEEEeC--CCeEE
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQ  175 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~--~~~~~h~~~v~~v~~s~~~~~l~s~~~--d~~i~  175 (500)
                      ....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++...  ..+.+|..+|.+++|+|++++|++++.  +..++
T Consensus        50 ~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~  129 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH  129 (311)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccc
Confidence            44567899999999999999999999999999999999887654  457789999999999999999999886  45699


Q ss_pred             EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eE
Q 010816          176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI  254 (500)
Q Consensus       176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l  254 (500)
                      +|++++++... .+.+|...|.++.|+|..    ...+++|+.|+.|++||++++++...+.+|..+|+++.|++++ .+
T Consensus       130 v~~~~~~~~~~-~l~~h~~~v~~v~~~~~~----~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l  204 (311)
T d1nr0a1         130 VFLFDTGTSNG-NLTGQARAMNSVDFKPSR----PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF  204 (311)
T ss_dssp             EEETTTCCBCB-CCCCCSSCEEEEEECSSS----SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccc-cccccccccccccccccc----eeeecccccccccccccccccccccccccccccccccccCcccccc
Confidence            99999887654 578899999999998732    2358899999999999999999999999999999999999986 57


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816          255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS  334 (500)
Q Consensus       255 ~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  334 (500)
                      ++++.|+.|++||..++.....+...                                                      
T Consensus       205 ~~~~~d~~v~~~d~~~~~~~~~~~~~------------------------------------------------------  230 (311)
T d1nr0a1         205 ASTGGDGTIVLYNGVDGTKTGVFEDD------------------------------------------------------  230 (311)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCT------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccc------------------------------------------------------
Confidence            88999999999999887655433210                                                      


Q ss_pred             eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeee
Q 010816          335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY  414 (500)
Q Consensus       335 ~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~  414 (500)
                                        .....+|...|++++|+|++++|++|+.||.|+|||+++++++.++..|.....        
T Consensus       231 ------------------~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~--------  284 (311)
T d1nr0a1         231 ------------------SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED--------  284 (311)
T ss_dssp             ------------------TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG--------
T ss_pred             ------------------ccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccc--------
Confidence                              112347889999999999999999999999999999999999988887643210        


Q ss_pred             eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                                        ...++.++++.|++++.||.|++||.+
T Consensus       285 ------------------~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         285 ------------------QQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             ------------------CEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             ------------------eEEEEEecCCEEEEEECCCEEEEEeCC
Confidence                              001234466789999999999999963

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.9e-35  Score=279.94  Aligned_cols=295  Identities=21%  Similarity=0.298  Sum_probs=217.1

Q ss_pred             cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce------eEEecCCCCCEEEEEE------cC-CCCEEEEEe
Q 010816          103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP------MFKCTGHKNWVLCIAW------SA-DGKHLVSGS  169 (500)
Q Consensus       103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~------~~~~~~h~~~v~~v~~------s~-~~~~l~s~~  169 (500)
                      ..+||.+.|+++++++  ++|+||+.|++|+|||..+...      ......|...+..+..      +. ++.++++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            3479999999999865  6899999999999999765431      2233345554433332      11 235778999


Q ss_pred             CCCeEEEEeCCCCCcccc---------cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe---------
Q 010816          170 KAGELQCWDPQTGKPSGN---------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---------  231 (500)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---------  231 (500)
                      .||.|++|+.........         ....+...+..+.|.+......+..+++++.||++++|++....         
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            999999998764432211         11223445666777765544556789999999999999974211         


Q ss_pred             ---------EEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816          232 ---------CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (500)
Q Consensus       232 ---------~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (500)
                               .......+...+.+++|++++.|++|+.|++|++||+.+++.+..+..                       
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~-----------------------  223 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFES-----------------------  223 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEEC-----------------------
T ss_pred             eccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccccccccccc-----------------------
Confidence                     111122345668899999999999999999999999998876544321                       


Q ss_pred             CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC
Q 010816          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK  382 (500)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg  382 (500)
                                                                        ...+.+|...|++++|+|||++|++|+.|+
T Consensus       224 --------------------------------------------------~~~l~~h~~~V~~l~~spdg~~l~sgs~D~  253 (393)
T d1sq9a_         224 --------------------------------------------------QHSMINNSNSIRSVKFSPQGSLLAIAHDSN  253 (393)
T ss_dssp             --------------------------------------------------CC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred             --------------------------------------------------ccccccccceEEEcccccccceeeeecCCC
Confidence                                                              122457889999999999999999999997


Q ss_pred             c---EEEEeCCCCceEEEEe-------------CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816          383 S---IKLWNGTTGKFVAVFR-------------GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS  446 (500)
Q Consensus       383 ~---i~lwd~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  446 (500)
                      +   |++||+++++++..+.             +|.+.|+++                           +|+|++++|++
T Consensus       254 t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l---------------------------~fspd~~~l~S  306 (393)
T d1sq9a_         254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL---------------------------SFNDSGETLCS  306 (393)
T ss_dssp             TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE---------------------------EECSSSSEEEE
T ss_pred             CcceeeecccccceeeeeeccccccccceeeeecccCceeee---------------------------ccCCCCCeeEE
Confidence            4   9999999999888775             566666666                           67999999999


Q ss_pred             EECCCcEEEEECCCccccccccCccc---------------------CEEEEEEcCCC----------CEEEEEeCCCcE
Q 010816          447 GSKDSTLKVWDIRTQKLKQDLPGHAD---------------------EVFAVDWSPDG----------EKVASGGKDRVL  495 (500)
Q Consensus       447 ~s~d~~v~iwd~~~~~~~~~~~~h~~---------------------~V~~l~~s~dg----------~~l~s~~~D~~v  495 (500)
                      |+.|++|+|||+++++++.++.+|.+                     .++++.|.+++          +.|++++.|+.|
T Consensus       307 ~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  386 (393)
T d1sq9a_         307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI  386 (393)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred             ECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeE
Confidence            99999999999999999988888854                     35666666543          458899999999


Q ss_pred             EEec
Q 010816          496 KLWM  499 (500)
Q Consensus       496 ~iW~  499 (500)
                      |+|.
T Consensus       387 r~~~  390 (393)
T d1sq9a_         387 RWFR  390 (393)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-35  Score=273.85  Aligned_cols=285  Identities=23%  Similarity=0.343  Sum_probs=223.4

Q ss_pred             cEEEEEEcCCCCeEEEEeCCC-cEEEEeCCCC--ceeEEecCCC-CCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCC
Q 010816          110 AVLSVAFSPDGRQLASGSGDT-TVRLWDLNTQ--TPMFKCTGHK-NWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~-~i~iwd~~~~--~~~~~~~~h~-~~v~~v~~s~--~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      .+++++|+|+++.||.++.+. .|+.||....  .....+.+|. ..|++++|+|  ++.+|++|+.||+|++||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            457889999999999987664 4677775443  3456677875 6799999998  56899999999999999987654


Q ss_pred             cccc-------cccCcccceEEEEeeeeecCCCCceEEEEe--CCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--
Q 010816          184 PSGN-------PLSGHKKWITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--  252 (500)
Q Consensus       184 ~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s--~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--  252 (500)
                      ....       ....|...|.++.|++     ++.++++++  .++.+++|+..+++++..+.+|...|.+++|++++  
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDF-----EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECT-----TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             ceeeeecccccccccccCcEEEEEECC-----CCCccceeeccccceEEEEeecccccceeeeecccccccccccccccc
Confidence            3221       2345677899999876     445666554  47789999999999999999999999999999875  


Q ss_pred             eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (500)
Q Consensus       253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (500)
                      .+++++.|+.+++||...++......                                                      
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~------------------------------------------------------  199 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDR------------------------------------------------------  199 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEEC------------------------------------------------------
T ss_pred             eEEEeecccccccccccccccceecc------------------------------------------------------
Confidence            47789999999999987654332211                                                      


Q ss_pred             EEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEee
Q 010816          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE  411 (500)
Q Consensus       333 ~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  411 (500)
                                            ...+|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+++|..++..+.|.
T Consensus       200 ----------------------~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s  257 (325)
T d1pgua1         200 ----------------------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA  257 (325)
T ss_dssp             ----------------------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred             ----------------------cccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceee
Confidence                                  11256677999999996 6899999999999999999999999999998876544331


Q ss_pred             eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccC----EEEEEEcCCCCEEE
Q 010816          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE----VFAVDWSPDGEKVA  487 (500)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~----V~~l~~s~dg~~l~  487 (500)
                      .                       +| |+|++|++++.|+.|+|||++++++++.+..|...    ..++.|.++ .+|+
T Consensus       258 ~-----------------------~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  312 (325)
T d1pgua1         258 L-----------------------SW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRII  312 (325)
T ss_dssp             E-----------------------EE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEE
T ss_pred             e-----------------------ec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEE
Confidence            0                       12 68999999999999999999999988777665543    345555554 4799


Q ss_pred             EEeCCCcEEEecC
Q 010816          488 SGGKDRVLKLWMG  500 (500)
Q Consensus       488 s~~~D~~v~iW~~  500 (500)
                      ++|.||+|++|+.
T Consensus       313 s~s~dg~i~vwdl  325 (325)
T d1pgua1         313 SLSLDGTLNFYEL  325 (325)
T ss_dssp             EEETTSCEEEEET
T ss_pred             EEECCCEEEEEEC
Confidence            9999999999984

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-34  Score=262.29  Aligned_cols=271  Identities=28%  Similarity=0.505  Sum_probs=213.5

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      ..+|...|+|++  +|+++||||+.||+|+|||+.+++++..+.+|.++|.+++|  ++++|++|+.|+.|++|++..+.
T Consensus        11 ~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          11 RSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence            467889999876  47999999999999999999999999999999999999987  57899999999999999998876


Q ss_pred             cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe---EEEEecCccccEEEEEeCCCCeEEEEeCC
Q 010816          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLAVTCVKWGGDGVIYTGSQD  260 (500)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~l~t~~~d  260 (500)
                      ....... +......  +.     .....++++..++.+++||.....   ....+..|...+.+..+..+ .+++++.|
T Consensus        87 ~~~~~~~-~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~d  157 (293)
T d1p22a2          87 MLNTLIH-HCEAVLH--LR-----FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGD  157 (293)
T ss_dssp             EEEEECC-CCSCEEE--EE-----CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT-EEEEEETT
T ss_pred             ccccccc-ccccccc--cc-----ccccceeecccccceeEeeccccccccccccccccccccccceeccc-ccccccCC
Confidence            4332211 1111111  11     233578999999999999987654   34456678888888877654 57788889


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      +.|++||.++++.+..+.                                                              
T Consensus       158 ~~i~~~d~~~~~~~~~~~--------------------------------------------------------------  175 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLN--------------------------------------------------------------  175 (293)
T ss_dssp             SEEEEEETTTCCEEEEEE--------------------------------------------------------------
T ss_pred             CceeeecCCCCcEEEEEc--------------------------------------------------------------
Confidence            999999988766544332                                                              


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCC
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS  420 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  420 (500)
                                       ++...+..+.++  +.++++++.||.|++||+++++.+..+.+|...+...            
T Consensus       176 -----------------~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~------------  224 (293)
T d1p22a2         176 -----------------GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI------------  224 (293)
T ss_dssp             -----------------CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE------------
T ss_pred             -----------------ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeec------------
Confidence                             233345555553  5689999999999999999999998888888776543            


Q ss_pred             CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc---------cccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816          421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ---------KLKQDLPGHADEVFAVDWSPDGEKVASGGK  491 (500)
Q Consensus       421 ~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~---------~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~  491 (500)
                                       ++++.+|++|+.||.|++||+...         ..+..+.+|.+.|++++|+  +++|+|||.
T Consensus       225 -----------------~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~  285 (293)
T d1p22a2         225 -----------------RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSH  285 (293)
T ss_dssp             -----------------ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCS
T ss_pred             -----------------cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEec
Confidence                             568889999999999999997542         3346678999999999995  578999999


Q ss_pred             CCcEEEec
Q 010816          492 DRVLKLWM  499 (500)
Q Consensus       492 D~~v~iW~  499 (500)
                      |++|+||+
T Consensus       286 Dg~i~iWD  293 (293)
T d1p22a2         286 DDTILIWD  293 (293)
T ss_dssp             SSEEEEEC
T ss_pred             CCEEEEeC
Confidence            99999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=265.01  Aligned_cols=240  Identities=20%  Similarity=0.321  Sum_probs=206.1

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT  181 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~  181 (500)
                      ..+|.+.|.+++|+|++++|++|+.|++|++||+....  ....+.+|...+.++.|+|++.++++++.|+.|++|++.+
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46899999999999999999999999999999987543  4456778999999999999999999999999999999988


Q ss_pred             CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCC
Q 010816          182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD  260 (500)
Q Consensus       182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~d  260 (500)
                      ++... ...+|...+.+++|++     ++..+++++.|+.+++||+++++.+..+ .|...|.+++|++++ .+++|+.|
T Consensus       173 ~~~~~-~~~~~~~~v~~l~~s~-----~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d  245 (337)
T d1gxra_         173 QTLVR-QFQGHTDGASCIDISN-----DGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             TEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccc-cccccccccccccccc-----cccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceeccc
Confidence            76543 4667889999999876     4468999999999999999999887765 478889999999876 57889999


Q ss_pred             CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816          261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT  340 (500)
Q Consensus       261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  340 (500)
                      +.+++||+.+++..                                                                  
T Consensus       246 ~~i~i~d~~~~~~~------------------------------------------------------------------  259 (337)
T d1gxra_         246 SNVEVLHVNKPDKY------------------------------------------------------------------  259 (337)
T ss_dssp             SCEEEEETTSSCEE------------------------------------------------------------------
T ss_pred             cccccccccccccc------------------------------------------------------------------
Confidence            99999998654321                                                                  


Q ss_pred             EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCC
Q 010816          341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS  420 (500)
Q Consensus       341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  420 (500)
                                    ....|...|++++|+|+|++|++|+.||.|++||..+++.+..+. |.++|.++            
T Consensus       260 --------------~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~------------  312 (337)
T d1gxra_         260 --------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSC------------  312 (337)
T ss_dssp             --------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEE------------
T ss_pred             --------------cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEE------------
Confidence                          112466779999999999999999999999999999999887654 66777766            


Q ss_pred             CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       421 ~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                                     +|+|++++|++|+.||+|+|||+
T Consensus       313 ---------------~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         313 ---------------DISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ---------------EECTTSCEEEEEETTSCEEEEEE
T ss_pred             ---------------EEeCCCCEEEEEeCCCeEEEEEE
Confidence                           57999999999999999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-34  Score=272.47  Aligned_cols=262  Identities=26%  Similarity=0.460  Sum_probs=208.8

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      ..+|...|.+++|+|++++|++|+.||+|++||...++.+....+|...|.++.|++++..+++++.++.+++||..+..
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  196 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  196 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccc
Confidence            35788899999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-------cCccccEEEEEeCCCC-eEE
Q 010816          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-------SGHTLAVTCVKWGGDG-VIY  255 (500)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~-~l~  255 (500)
                      .... . .+......+.+.+    .++..+++|+.|+.|++||..++.....+       .+|...|.++.|++++ .|+
T Consensus       197 ~~~~-~-~~~~~~~~~~~~~----~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  270 (388)
T d1erja_         197 CSLT-L-SIEDGVTTVAVSP----GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  270 (388)
T ss_dssp             EEEE-E-ECSSCEEEEEECS----TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             cccc-c-ccccccccccccC----CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEE
Confidence            4321 2 2333344555544    24568999999999999999988766554       4688899999999886 688


Q ss_pred             EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816          256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (500)
Q Consensus       256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  335 (500)
                      +|+.|+.|++||++++..........                                                      
T Consensus       271 s~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------------------  296 (388)
T d1erja_         271 SGSLDRSVKLWNLQNANNKSDSKTPN------------------------------------------------------  296 (388)
T ss_dssp             EEETTSEEEEEEC-------------------------------------------------------------------
T ss_pred             EEECCCcEEEEeccCCcccccccccc------------------------------------------------------
Confidence            99999999999987654332111000                                                      


Q ss_pred             eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC  415 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  415 (500)
                                   ..........|...|.+++|+|+|++|++|+.||.|++||+.+++++.++++|.+.|.++.+..   
T Consensus       297 -------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~---  360 (388)
T d1erja_         297 -------------SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN---  360 (388)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS---
T ss_pred             -------------ccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEec---
Confidence                         0011223446788899999999999999999999999999999999999999999999886421   


Q ss_pred             ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                                        ...|+|++.+||+|+.||+|+||+++
T Consensus       361 ------------------~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         361 ------------------GSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             ------------------SCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             ------------------CcccCCCCCEEEEEeCCCEEEEEeee
Confidence                              12468999999999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-33  Score=259.01  Aligned_cols=268  Identities=28%  Similarity=0.437  Sum_probs=222.2

Q ss_pred             ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (500)
Q Consensus       141 ~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg  220 (500)
                      .+.+.+.||.++|++|+|+|++++|+||+.||+|++||+.+++... .+.+|...|.++.|.|     ++..+++++.++
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~-~~~~h~~~V~~~~~~~-----~~~~~~~~~~~~   81 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-TLKGHTDSVQDISFDH-----SGKLLASCSADM   81 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE-EECCCSSCEEEEEECT-----TSSEEEEEETTS
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEE-EEeCCCCcEEEEeeec-----cccccccccccc
Confidence            3446788999999999999999999999999999999999987654 5778999999999976     456899999999


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (500)
                      .+.+|+....+....+.+|...+.++.|++++ .+++++.|+.+++||+++++.+..                       
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----------------------  138 (317)
T d1vyhc1          82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-----------------------  138 (317)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE-----------------------
T ss_pred             ccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeE-----------------------
Confidence            99999999999888889999999999999875 588899999999999877654332                       


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe
Q 010816          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (500)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs  379 (500)
                                                                              +.+|...+.+++|+|++.+|++++
T Consensus       139 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~l~~~~  162 (317)
T d1vyhc1         139 --------------------------------------------------------FTGHREWVRMVRPNQDGTLIASCS  162 (317)
T ss_dssp             --------------------------------------------------------EECCSSCEEEEEECTTSSEEEEEE
T ss_pred             --------------------------------------------------------EccCCCcceeeecccCCCEEEEEe
Confidence                                                                    234556688899999999999999


Q ss_pred             CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816          380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR  459 (500)
Q Consensus       380 ~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~  459 (500)
                      .|+.|++|+..+++.+..+.+|...+..+.+.......       ................+.++++|+.|+.|++||++
T Consensus       163 ~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  235 (317)
T d1vyhc1         163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS-------SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  235 (317)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGG-------GGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccc-------eeeccccceeeeeccCCceeEeccCCCEEEEEECC
Confidence            99999999999999999999999999988764321110       00001111112235678899999999999999999


Q ss_pred             CccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          460 TQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       460 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      +++.+..+.+|...|.+++|+|++++|++|+.||.|++|+.
T Consensus       236 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  276 (317)
T d1vyhc1         236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY  276 (317)
T ss_dssp             TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             CCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            99999999999999999999999999999999999999973

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-34  Score=261.71  Aligned_cols=279  Identities=16%  Similarity=0.256  Sum_probs=217.8

Q ss_pred             ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (500)
Q Consensus       141 ~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg  220 (500)
                      +++..++||.++|++++|+|    |+||+.||+|++||+.++      ..+|...|.++.+.+      ...+++++.|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~------~~~h~~~V~~~~~~~------~~~~~s~s~D~   67 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM------HQDHSNLIVSLDNSK------AQEYSSISWDD   67 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE------ECCCCSCEEEEECCS------TTCCEEEETTT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC------CCCCCCCEEEEEecC------CCeEEEEeecc
Confidence            56778999999999999987    999999999999998764      357888999998754      34689999999


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccc
Q 010816          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF  300 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  300 (500)
                      ++++|++...+       ....+.++.+.+++.++..+.++.+.+|+..+++.+..+..+.. +.++...          
T Consensus        68 ~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------  129 (287)
T d1pgua2          68 TLKVNGITKHE-------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP-GSAVSLS----------  129 (287)
T ss_dssp             EEEETTEEEEE-------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSC-EEEEEEC----------
T ss_pred             ccccccccccc-------cccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccce-eeeeecc----------
Confidence            99999975432       22346678888889888888888999999999888877664432 2222221          


Q ss_pred             cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC-CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe
Q 010816          301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (500)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d-~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs  379 (500)
                                                  +..++.++.| +.+++|+.............|...+.+++|+|++.+|++|+
T Consensus       130 ----------------------------~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  181 (287)
T d1pgua2         130 ----------------------------QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD  181 (287)
T ss_dssp             ----------------------------SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ----------------------------CcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc
Confidence                                        2345555554 57999997543333333345778899999999999999999


Q ss_pred             CCCcEEEEeCCCCceEE-EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          380 FDKSIKLWNGTTGKFVA-VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       380 ~Dg~i~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                      .||.|++||+.+++... .+.+|..+|.++.|.+...                 ....+.+++.+|++|+.|++|++||+
T Consensus       182 ~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~-----------------~~~~~~~~~~~l~sgs~D~~i~iw~~  244 (287)
T d1pgua2         182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK-----------------GANEEEIEEDLVATGSLDTNIFIYSV  244 (287)
T ss_dssp             TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----------------------CCSCCEEEEEETTSCEEEEES
T ss_pred             ccccccceeecccccccccccccccccceeeeccccc-----------------ccccccCCCCeeEeecCCCeEEEEEC
Confidence            99999999999988754 4678999999987632211                 11123567889999999999999998


Q ss_pred             CC-ccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          459 RT-QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       459 ~~-~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +. .+....+.+|.+.|++++|+|++ .|+|+|.|++|++|+
T Consensus       245 ~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         245 KRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             SCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             CCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence            76 55677788999999999999986 699999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.4e-34  Score=270.91  Aligned_cols=243  Identities=20%  Similarity=0.282  Sum_probs=196.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc-cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC
Q 010816          149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV  227 (500)
Q Consensus       149 h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~  227 (500)
                      +..+|+|++|+|||++||+|+.|+.|++||.++++.. ...+.+|...|.++.|+|     ++.++++|+.|++|++||+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-----~~~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-----DSNRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-----TTTEEEEEETTSCEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-----CCCEEEEEECCCeEEEEee
Confidence            3578999999999999999999999999999877532 335689999999999987     4468999999999999999


Q ss_pred             CCCe--EEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCC
Q 010816          228 SLRK--CVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG  304 (500)
Q Consensus       228 ~~~~--~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  304 (500)
                      ..+.  +...+.+|...|.++.|+|++ .|++|+.|++|++|++.........                           
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~---------------------------  133 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC---------------------------  133 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE---------------------------
T ss_pred             cccccccccccccccccccccccccccccceeecccCcceeeeeecccccccc---------------------------
Confidence            8765  445567899999999999887 5889999999999986543211100                           


Q ss_pred             CCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcE
Q 010816          305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI  384 (500)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i  384 (500)
                                                                      .....+|...|.+++|+|++++||+|+.|+.|
T Consensus       134 ------------------------------------------------~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_         134 ------------------------------------------------KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             ------------------------------------------------EEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ------------------------------------------------cccccccccccccccccccccceeccccCcEE
Confidence                                                            01123567789999999999999999999999


Q ss_pred             EEEeCCCCc------------------eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816          385 KLWNGTTGK------------------FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS  446 (500)
Q Consensus       385 ~lwd~~~~~------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s  446 (500)
                      ++||.....                  .+....+|.+.+.++                           +|+|+|++|++
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~g~~l~s  218 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV---------------------------CFSANGSRVAW  218 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE---------------------------EECSSSSEEEE
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEE---------------------------Eeecccccccc
Confidence            999976532                  233344455555444                           67999999999


Q ss_pred             EECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       447 ~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      ++.|+.|++||+.+++.+..+.+|..+|.+++|+||++.|++|+ |+.+++|.
T Consensus       219 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~  270 (371)
T d1k8kc_         219 VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFT  270 (371)
T ss_dssp             EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEE
T ss_pred             cccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEE
Confidence            99999999999999999999999999999999999998777654 67666653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-32  Score=256.51  Aligned_cols=303  Identities=16%  Similarity=0.126  Sum_probs=212.2

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee---EEecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEE
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---FKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCW  177 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~~w  177 (500)
                      ..+.+|.+.|++|+|+|++++||+|+.||+|+|||+.++...   ....+|..+|.+++|+|++ .+|++|+.|+.|++|
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            456799999999999999999999999999999999765443   3334799999999999864 589999999999999


Q ss_pred             eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe----EEEEecCccc--cEEEEEeC-C
Q 010816          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHTL--AVTCVKWG-G  250 (500)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~----~~~~~~~h~~--~v~~~~~~-~  250 (500)
                      +...+.........+........+.+     ....+++++.|+.+++||++...    .......+..  ......+. .
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICKY-----GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEE-----TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             eccccccccccccccccccccccccc-----ccccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence            99877654433333322222222222     33578999999999999986432    2222222211  12222222 2


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCeeEEE---eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816          251 DGVIYTGSQDCTIKVWETTQGKLIRE---LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN  327 (500)
Q Consensus       251 ~~~l~t~~~dg~i~lwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (500)
                      ...+++++.|+.|++||+..+.....   .........+....+.                                   
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  204 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK-----------------------------------  204 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG-----------------------------------
T ss_pred             CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecC-----------------------------------
Confidence            34788999999999999977643221   1222222333322221                                   


Q ss_pred             CCcEEEEeeCCCeEEEEcCCCCCCCc--------------eeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816          328 APERLVSGSDDFTMFLWEPAVSKQPK--------------TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK  393 (500)
Q Consensus       328 ~~~~~~s~s~d~~v~~wd~~~~~~~~--------------~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~  393 (500)
                      ....+++++.|+.+.+|+........              ....+|...|++++|+|++++||+|+.||.|++||+.+++
T Consensus       205 ~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~  284 (342)
T d1yfqa_         205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             CCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCc
Confidence            13468899999999999865332111              1124567789999999999999999999999999999999


Q ss_pred             eEEEEeCC-cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCccc
Q 010816          394 FVAVFRGH-VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD  472 (500)
Q Consensus       394 ~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~  472 (500)
                      .+..+..+ ...+                             .+++|++++|++|+.|..+++|...    ...+..|..
T Consensus       285 ~l~~~~~~~~~~~-----------------------------~~~s~~~~~l~~a~sdd~~~~~~~~----~~~~~~~~~  331 (342)
T d1yfqa_         285 KIKNFAKFNEDSV-----------------------------VKIACSDNILCLATSDDTFKTNAAI----DQTIELNAS  331 (342)
T ss_dssp             EEEECCCCSSSEE-----------------------------EEEEECSSEEEEEEECTHHHHCSSS----CTTSCCCCC
T ss_pred             EEEEecCCCCCEE-----------------------------EEEEeCCCEEEEEEcCCcEEEeeee----CCCccCCCC
Confidence            88877543 3222                             2568899999999999998888542    234556777


Q ss_pred             CEEEE
Q 010816          473 EVFAV  477 (500)
Q Consensus       473 ~V~~l  477 (500)
                      +|+.+
T Consensus       332 ~i~~~  336 (342)
T d1yfqa_         332 SIYII  336 (342)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            88755

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-31  Score=248.46  Aligned_cols=283  Identities=30%  Similarity=0.549  Sum_probs=225.2

Q ss_pred             EeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEE
Q 010816          135 WDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV  214 (500)
Q Consensus       135 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  214 (500)
                      |+..+.++...++||++.|.+ +++++|++||||+.||+|++||+.+++... .+.+|...|.++.|.|       ..++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~-~~~~h~~~V~~v~~~~-------~~l~   71 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR-TLVGHTGGVWSSQMRD-------NIII   71 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE-ECCCCSSCEEEEEEET-------TEEE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE-EEeCCCCCEEEEEeCC-------Cccc
Confidence            555566677789999999864 355678999999999999999999988654 5789999999999875       3799


Q ss_pred             EEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcce
Q 010816          215 SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA  294 (500)
Q Consensus       215 s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  294 (500)
                      +|+.|+.+++|+............+...+......+ ..+..+..|+.+.+|+..+++....+............     
T Consensus        72 s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----  145 (342)
T d2ovrb2          72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-----  145 (342)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-----
T ss_pred             cceecccccccccccccceecccccceeEeeeeccc-ccccccccceeEEEeecccccceeeeecccccceeecc-----
Confidence            999999999999998888777777777776665544 46778999999999999988776665443332222111     


Q ss_pred             eeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCE
Q 010816          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW  374 (500)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~  374 (500)
                                                       ....++.++.|+.+++||.... .....+.+|...+..+.+  ++.+
T Consensus       146 ---------------------------------~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~  189 (342)
T d2ovrb2         146 ---------------------------------DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF--DGIH  189 (342)
T ss_dssp             ---------------------------------CSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--CSSE
T ss_pred             ---------------------------------ccceeeeecCCCeEEEeecccc-eeeEEEcCcccccccccC--CCCE
Confidence                                             1235788999999999997543 334556778777666554  6889


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEE
Q 010816          375 VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK  454 (500)
Q Consensus       375 lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~  454 (500)
                      |++|+.||.|++||++.++++..+.+|...+.++                             ++++++|++|+.|+.|+
T Consensus       190 l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~-----------------------------~~~~~~l~s~s~d~~i~  240 (342)
T d2ovrb2         190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM-----------------------------ELKDNILVSGNADSTVK  240 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE-----------------------------EEETTEEEEEETTSCEE
T ss_pred             EEEEeCCCeEEEeecccceeeeEecccccceeEE-----------------------------ecCCCEEEEEcCCCEEE
Confidence            9999999999999999999999999998887765                             34567999999999999


Q ss_pred             EEECCCccccccccC---cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          455 VWDIRTQKLKQDLPG---HADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       455 iwd~~~~~~~~~~~~---h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +||+...+....+.+   |...+.++.+++  +++++|+.||+|++|+
T Consensus       241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWD  286 (342)
T ss_dssp             EEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEE
T ss_pred             EEecccccccccccccceeeeceeecccCC--CeeEEEcCCCEEEEEE
Confidence            999988776555443   566778887765  6999999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-32  Score=250.26  Aligned_cols=269  Identities=18%  Similarity=0.237  Sum_probs=208.7

Q ss_pred             ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      +.++|.||.++|++++|+|    |+||+.||+|++||+.++     ..+|...|.++.|+++ ..+++++.|+++++|+.
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETTE
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeeccccccccc
Confidence            3457899999999999988    999999999999998753     3589999999999876 46899999999999987


Q ss_pred             CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC
Q 010816          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ  259 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~  259 (500)
                      .+.+.        ...+..+.+.+     + ..++..+.++.+.+|+...++.+..+..+ ..+.++....+ .+++++.
T Consensus        75 ~~~~~--------~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~v~~~  138 (287)
T d1pgua2          75 TKHEF--------GSQPKVASANN-----D-GFTAVLTNDDDLLILQSFTGDIIKSVRLN-SPGSAVSLSQN-YVAVGLE  138 (287)
T ss_dssp             EEEEC--------SSCEEEEEECS-----S-SEEEEEETTSEEEEEETTTCCEEEEEECS-SCEEEEEECSS-EEEEEET
T ss_pred             ccccc--------ccceeeeeecc-----C-CceEEEeecccceeeeccceeeeeecccc-ceeeeeeccCc-ceeeecc
Confidence            54321        11233444432     2 34555667778999999998887776544 34555555443 5555555


Q ss_pred             C-CeEEEEeCCCCeeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816          260 D-CTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD  337 (500)
Q Consensus       260 d-g~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~  337 (500)
                      | +.+++|++...+....+. .+...+.+++++++                                    +..+++|+.
T Consensus       139 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------------------------~~~l~~g~~  182 (287)
T d1pgua2         139 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS------------------------------------ETYIAAGDV  182 (287)
T ss_dssp             TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT------------------------------------SSEEEEEET
T ss_pred             ccceeeeeeccccceeeeeeeccCCceeEEEeccC------------------------------------ccccccccc
Confidence            5 579999987766555443 46677899988875                                    357999999


Q ss_pred             CCeEEEEcCCCCCCCceeeecccCcEEEEEECCC----------CCEEEEEeCCCcEEEEeCCC-CceEEEEeCCcccEE
Q 010816          338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD----------GQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVY  406 (500)
Q Consensus       338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~----------g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~h~~~v~  406 (500)
                      |+.|++||..........+.+|...|.+++|+|+          +.+||+|+.|+.|++||+++ ++.+..+.+|.+.|.
T Consensus       183 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~  262 (287)
T d1pgua2         183 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN  262 (287)
T ss_dssp             TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEE
T ss_pred             cccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeE
Confidence            9999999987655445567789999999999875          46899999999999999877 567788889999998


Q ss_pred             EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                      ++                           +|+|++ .|++++.|+.|++|++
T Consensus       263 ~v---------------------------~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         263 NL---------------------------LWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EE---------------------------EEEETT-EEEEEETTSCEEEEEE
T ss_pred             EE---------------------------EECCCC-EEEEEECCCeEEEEEE
Confidence            88                           457776 5889999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-31  Score=245.20  Aligned_cols=243  Identities=19%  Similarity=0.235  Sum_probs=184.0

Q ss_pred             ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (500)
Q Consensus       141 ~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg  220 (500)
                      .....+.||.++|++++|+||+++|+||+.||+|++||+++++......                               
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~-------------------------------   51 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP-------------------------------   51 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS-------------------------------
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-------------------------------
Confidence            3446788999999999999999999999999999999998765432211                               


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeE---EEeecCCceEEEEEecCcceeee
Q 010816          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI---RELKGHGHWVNSLALSTEYALRT  297 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~  297 (500)
                                      .+|...|++++|++++.+++++.|+.+++|+.......   .....+...+..++++++.    
T Consensus        52 ----------------~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g----  111 (299)
T d1nr0a2          52 ----------------DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG----  111 (299)
T ss_dssp             ----------------CSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS----
T ss_pred             ----------------CCCCCcEEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccccccccccc----
Confidence                            24566677777877777777888888888876543211   1112334455566655432    


Q ss_pred             ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEE
Q 010816          298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS  377 (500)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~las  377 (500)
                                                      . ++.++.++.+.+|+...   ..  .......+.+++|+|++++|++
T Consensus       112 --------------------------------~-~~~~~~~~~i~~~~~~~---~~--~~~~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2         112 --------------------------------D-IAVAACYKHIAIYSHGK---LT--EVPISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             --------------------------------S-CEEEEESSEEEEEETTE---EE--EEECSSCEEEEEECTTSCEEEE
T ss_pred             --------------------------------c-ccccccccccccccccc---cc--cccccccccccccccccccccc
Confidence                                            2 34445567899998432   11  1223445889999999999999


Q ss_pred             EeCCCcEEEEeCCCCceEE-EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEE
Q 010816          378 ASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW  456 (500)
Q Consensus       378 gs~Dg~i~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iw  456 (500)
                      |+.||.|++||+++++... ....|..+|.++                           +|+|++++|++++.|+.|++|
T Consensus       154 g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~---------------------------~~~~~~~~l~~~~~d~~i~~~  206 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGASVSEVKTIVHPAEITSV---------------------------AFSNNGAFLVATDQSRKVIPY  206 (299)
T ss_dssp             EETTSEEEEEEEETTEEEEEEEEECSSCEEEE---------------------------EECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccc---------------------------ccccccccccccccccccccc
Confidence            9999999999998877643 334577777766                           569999999999999999999


Q ss_pred             ECCCcccc---ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          457 DIRTQKLK---QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       457 d~~~~~~~---~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      |+.++...   ..+.+|...|.+++|+|++++|++|+.|++|++|+
T Consensus       207 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         207 SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             EGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccccccccccccccccccccccccccceEEEcCCCEEEEEE
Confidence            99876543   45678999999999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-31  Score=250.23  Aligned_cols=289  Identities=25%  Similarity=0.385  Sum_probs=223.2

Q ss_pred             eEeEEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCC--CCCEEEEEEcCCCCEEE
Q 010816           91 VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSADGKHLV  166 (500)
Q Consensus        91 ~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~~~~l~  166 (500)
                      ..+++..  .++..++.+|.++|.+++|+|+ .+|++|+.|++|++|+............+  ........+.+++.+++
T Consensus        34 ~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (355)
T d1nexb2          34 MIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV  112 (355)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEE
T ss_pred             eEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceee
Confidence            3455543  3466788999999999999985 58999999999999999988776555433  34456677888999999


Q ss_pred             EEeCCCeEEEEeCCCCCcccccc----------------------cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE
Q 010816          167 SGSKAGELQCWDPQTGKPSGNPL----------------------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI  224 (500)
Q Consensus       167 s~~~d~~i~~wd~~~~~~~~~~~----------------------~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i  224 (500)
                      +++.|+.|++||+.++.......                      ..|...+....       .++..++++..|+.+++
T Consensus       113 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~d~~i~~  185 (355)
T d1nexb2         113 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-------GHGNIVVSGSYDNTLIV  185 (355)
T ss_dssp             EEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEE-------EETTEEEEEETTSCEEE
T ss_pred             eecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccc-------cccceeeeecccceeee
Confidence            99999999999987654322110                      01111111111       13457899999999999


Q ss_pred             EECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCC
Q 010816          225 WDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT  303 (500)
Q Consensus       225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  303 (500)
                      ||+++++.+....++...+.++.|++++ .+++++.|+.|++||..++..+..+.+|...|.++++++            
T Consensus       186 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~------------  253 (355)
T d1nexb2         186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD------------  253 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS------------
T ss_pred             eecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc------------
Confidence            9999999999999999999999998765 688899999999999999999999999999998887753            


Q ss_pred             CCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEE-EECCCCCEEEEEeCCC
Q 010816          304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV-YFSPDGQWVASASFDK  382 (500)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l-~~sp~g~~lasgs~Dg  382 (500)
                                                ..+++|+.|++|++||....   ...+..|...+.++ .+++++.+|++|+ |+
T Consensus       254 --------------------------~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~  303 (355)
T d1nexb2         254 --------------------------KFLVSAAADGSIRGWDANDY---SRKFSYHHTNLSAITTFYVSDNILVSGS-EN  303 (355)
T ss_dssp             --------------------------SEEEEECTTSEEEEEETTTC---CEEEEEECTTCCCCCEEEECSSEEEEEE-TT
T ss_pred             --------------------------ceeeeeeccccccccccccc---ceecccccCCceEEEEEcCCCCEEEEEe-CC
Confidence                                      36899999999999997643   24455666666665 4567888777764 89


Q ss_pred             cEEEEeCCCCceEE-EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816          383 SIKLWNGTTGKFVA-VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD  457 (500)
Q Consensus       383 ~i~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd  457 (500)
                      .|++||+++|+++. .+.+|.++|.++                           +|+|+ .++++++.||+++||.
T Consensus       304 ~i~vwd~~tg~~~~~~~~~~~~~V~~v---------------------------~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         304 QFNIYNLRSGKLVHANILKDADQIWSV---------------------------NFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEEEETTTCCBCCSCTTTTCSEEEEE---------------------------EEETT-EEEEEEESSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCCCEEEE---------------------------EEcCC-eEEEEEECCCcEEEEE
Confidence            99999999999874 567888888877                           45775 5788899999977764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-31  Score=248.54  Aligned_cols=250  Identities=20%  Similarity=0.268  Sum_probs=194.2

Q ss_pred             ccccCC-cccEEEEEEcC--CCCeEEEEeCCCcEEEEeCCCCcee--------EEecCCCCCEEEEEEcCCCCEEEEEeC
Q 010816          102 ATIAGH-TEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQTPM--------FKCTGHKNWVLCIAWSADGKHLVSGSK  170 (500)
Q Consensus       102 ~~~~gh-~~~V~~~~~sp--~~~~lat~~~d~~i~iwd~~~~~~~--------~~~~~h~~~v~~v~~s~~~~~l~s~~~  170 (500)
                      ..+.|| ...|++++|+|  ++++||+|+.||+|+|||+..+...        .....|.++|.+++|++++++|++++.
T Consensus        56 ~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  135 (325)
T d1pgua1          56 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE  135 (325)
T ss_dssp             EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeec
Confidence            456677 56899999998  5689999999999999998654322        224568899999999999999987654


Q ss_pred             --CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe---cCccccEEE
Q 010816          171 --AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTC  245 (500)
Q Consensus       171 --d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~---~~h~~~v~~  245 (500)
                        ++.+++|+..+++... .+.+|...|.++.|.|..    ...+++++.|+.+++||....+....+   .+|...|.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~----~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~  210 (325)
T d1pgua1         136 GRDNFGVFISWDSGNSLG-EVSGHSQRINACHLKQSR----PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD  210 (325)
T ss_dssp             CSSCSEEEEETTTCCEEE-ECCSCSSCEEEEEECSSS----SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             cccceEEEEeecccccce-eeeecccccccccccccc----cceEEEeecccccccccccccccceecccccCCCCccEE
Confidence              6789999999887654 467899999999998743    235789999999999999887765544   467788999


Q ss_pred             EEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhh
Q 010816          246 VKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK  323 (500)
Q Consensus       246 ~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (500)
                      ++|+|+  ..+++++.|+.|++||+++++.+..+..|..++                                       
T Consensus       211 v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v---------------------------------------  251 (325)
T d1pgua1         211 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV---------------------------------------  251 (325)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC---------------------------------------
T ss_pred             eeeccccceeccccccccceeeeeecccccccccccccccc---------------------------------------
Confidence            999986  368889999999999999887776665443211                                       


Q ss_pred             hcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc
Q 010816          324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG  403 (500)
Q Consensus       324 ~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~  403 (500)
                                                          ...+.++++ |+|++|++++.|+.|+|||+++++++..+..|..
T Consensus       252 ------------------------------------~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         252 ------------------------------------QGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             ------------------------------------CSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             ------------------------------------ccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence                                                122334444 5789999999999999999999999988877654


Q ss_pred             cEE--EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          404 PVY--QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       404 ~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                      .+.  .+.                         +.|.+ +.+|++++.||+|++||+
T Consensus       295 ~~~~~~~~-------------------------~~~~~-~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         295 QLGNQQVG-------------------------VVATG-NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CGGGCEEE-------------------------EEEEE-TTEEEEEETTSCEEEEET
T ss_pred             cccCeEEE-------------------------EEECC-CCEEEEEECCCEEEEEEC
Confidence            421  111                         12333 347899999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=6.6e-29  Score=232.19  Aligned_cols=270  Identities=23%  Similarity=0.408  Sum_probs=214.2

Q ss_pred             CeeeEEEEEEeecc----------eEeEEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----
Q 010816           77 SVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----  140 (500)
Q Consensus        77 ~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~----  140 (500)
                      +...|..+.|.|..          ..++|..  ..+...+.+|..+|.+++|+|+++++++|+.|+.+++|+....    
T Consensus        54 H~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  133 (340)
T d1tbga_          54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV  133 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCC
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccccc
Confidence            34556677776643          3455543  3455678899999999999999999999999999999997653    


Q ss_pred             ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816          141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG  220 (500)
Q Consensus       141 ~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg  220 (500)
                      .....+.+|.....+..... +..++....|.....|......... ....+...+....+.+     ....+++|+.|+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~  206 (340)
T d1tbga_         134 RVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTT-TFTGHTGDVMSLSLAP-----DTRLFVSGACDA  206 (340)
T ss_dssp             CEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEE-EEECCSSCEEEEEECT-----TSSEEEEEETTT
T ss_pred             ccceeccccccccccccccc-ccccccccccccccccccccccccc-cccccceeEeeecccc-----ccceeEEeecCc
Confidence            33455678887777666654 4577888889999999876543322 2233444455554433     446789999999


Q ss_pred             cEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816          221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA  299 (500)
Q Consensus       221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  299 (500)
                      .|++||+++++++..+.+|...|++++|++++ .|++|+.|+.|++||+........+.                     
T Consensus       207 ~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~---------------------  265 (340)
T d1tbga_         207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS---------------------  265 (340)
T ss_dssp             EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---------------------
T ss_pred             eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc---------------------
Confidence            99999999999999999999999999999886 68899999999999987755433211                     


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe
Q 010816          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS  379 (500)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs  379 (500)
                                                                              ...+...|.+++|+|++++|++|+
T Consensus       266 --------------------------------------------------------~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
T d1tbga_         266 --------------------------------------------------------HDNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             --------------------------------------------------------CTTCCSCEEEEEECSSSCEEEEEE
T ss_pred             --------------------------------------------------------cccccCceEEEEECCCCCEEEEEE
Confidence                                                                    012345688999999999999999


Q ss_pred             CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816          380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD  457 (500)
Q Consensus       380 ~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd  457 (500)
                      .||.|++||+.+++++.++++|.++|.++                           +|+|++.+|++|+.||.|+|||
T Consensus       290 ~dg~i~iwd~~~~~~~~~~~~H~~~V~~l---------------------------~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         290 DDFNCNVWDALKADRAGVLAGHDNRVSCL---------------------------GVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEE---------------------------EECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEE---------------------------EEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999999999999888                           5699999999999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.6e-30  Score=240.35  Aligned_cols=302  Identities=12%  Similarity=0.094  Sum_probs=204.6

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc--cccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN--PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA  222 (500)
Q Consensus       145 ~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v  222 (500)
                      ..++|.+.|++|+|+|++++||+|+.||+|++||+.++.....  ...+|...|.+++|.|.    ....+++|+.|+.|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~----~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN----TDLQIYVGTVQGEI   81 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES----SSEEEEEEETTSCE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC----CCCEEEEcccccce
Confidence            4568999999999999999999999999999999977654222  23468999999999873    23579999999999


Q ss_pred             EEEECCCCeEEEEecCccccE--EEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEe----ecCCc--eEEEEEecCcce
Q 010816          223 RIWDVSLRKCVICLSGHTLAV--TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL----KGHGH--WVNSLALSTEYA  294 (500)
Q Consensus       223 ~iwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~----~~~~~--~v~~~~~~~~~~  294 (500)
                      ++|++...........+....  ..........+++++.|+++++||++++......    ..+..  ......+.    
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  157 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD----  157 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE----
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee----
Confidence            999998877666655443332  2233344568999999999999998654322111    11110  00111111    


Q ss_pred             eeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce--eeecccCcEEEEEECC-C
Q 010816          295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT--RMTGHQQLVNHVYFSP-D  371 (500)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~--~~~~h~~~v~~l~~sp-~  371 (500)
                                                      .....+++++.|+.+++||+........  ....+...+.+..+.+ +
T Consensus       158 --------------------------------~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (342)
T d1yfqa_         158 --------------------------------TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE  205 (342)
T ss_dssp             --------------------------------ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG
T ss_pred             --------------------------------ccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCC
Confidence                                            1245789999999999999865543222  2334445566666655 6


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC
Q 010816          372 GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS  451 (500)
Q Consensus       372 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~  451 (500)
                      +..+++++.||.+.+|+...........    .......     .+..   .........+..++|+|++.+||+|+.||
T Consensus       206 ~~~~~~~s~dg~~~v~~~~~~~~~~~~~----~~~~~~~-----~~~~---~~~~~~~~~v~~l~~sp~~~~lasg~~Dg  273 (342)
T d1yfqa_         206 QEGYACSSIDGRVAVEFFDDQGDDYNSS----KRFAFRC-----HRLN---LKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             GCEEEEEETTSEEEEEECCTTCCSTTCT----TCEEEEC-----CCCC---TTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             CCEEEeecCCCeEEEEEecCCcceeecc----ccceeee-----eeec---cCCCcccccceeEEecCCccEEEEECCCC
Confidence            7899999999999999976542210000    0000000     0000   00000111233457899999999999999


Q ss_pred             cEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          452 TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       452 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      .|++||+++++.+..+..+ ..+..++|+|+|+.|++++.|+++++|.
T Consensus       274 ~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         274 IISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             CEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred             EEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence            9999999999888877654 3445677888999999999998887774

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=2.5e-30  Score=244.21  Aligned_cols=311  Identities=14%  Similarity=0.067  Sum_probs=229.8

Q ss_pred             EEEEcC-CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCCcccccc
Q 010816          113 SVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSGNPL  189 (500)
Q Consensus       113 ~~~~sp-~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~  189 (500)
                      .-.||| ||+++|+++ +|.|.+||++++.... + +|...|.+++|+|||++|++++.+.  .|++||.++++..  .+
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~--~~   81 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE--KF   81 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE--EC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE--Ee
Confidence            457999 999999986 4799999998876553 3 7999999999999999998877654  7999999987654  46


Q ss_pred             cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEE----------Ee
Q 010816          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYT----------GS  258 (500)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t----------~~  258 (500)
                      ..|...+.++.|+|     ++.++++++.++.+++|++..+++...+..|...+.+++|++++. |+.          +.
T Consensus        82 ~~~~~~v~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3          82 EENLGNVFAMGVDR-----NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             CCCCCSEEEEEECT-----TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             eCCCceEEeeeecc-----cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence            78899999999987     557899999999999999999999999999999999999999985 432          33


Q ss_pred             CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      .++.+++||..+++.... ..+...+..++++++                                    +..++.++.|
T Consensus       157 ~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spd------------------------------------g~~l~~~s~~  199 (360)
T d1k32a3         157 VMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDAD------------------------------------SKNLYYLSYR  199 (360)
T ss_dssp             CEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTT------------------------------------SCEEEEEESC
T ss_pred             cccceeeeccccCceeee-cccccccccccccCC------------------------------------CCEEEEEeCC
Confidence            456799999988765543 345556677777765                                    3578899999


Q ss_pred             CeEEEEcCCCCCC------CceeeecccCcEEEEEECCCCCEEEEEeCCCc-----EEEEeCCCCceEEEEeCCcccEEE
Q 010816          339 FTMFLWEPAVSKQ------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKS-----IKLWNGTTGKFVAVFRGHVGPVYQ  407 (500)
Q Consensus       339 ~~v~~wd~~~~~~------~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~-----i~lwd~~~~~~~~~~~~h~~~v~~  407 (500)
                      +.+.+|+......      .......|...+..+.|+|++..++++..+..     +..++...+... .+..+.+.+..
T Consensus       200 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  278 (360)
T d1k32a3         200 SLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR-MIIPLESSILI  278 (360)
T ss_dssp             CCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE-EEEECSSEEEE
T ss_pred             CceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCcee-EeeecCCCceE
Confidence            9999998643211      01122334455555677788877776655432     344444444322 22223332222


Q ss_pred             EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEE
Q 010816          408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA  487 (500)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~  487 (500)
                      +.+                        ..+++.+.++++++.++.+++||+.+++..    .|.+.|.+++|||||++|+
T Consensus       279 ~~~------------------------~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~  330 (360)
T d1k32a3         279 YSV------------------------PVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVM  330 (360)
T ss_dssp             EEC------------------------CCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEE
T ss_pred             EEE------------------------EecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEE
Confidence            211                        122344557888899999999999887643    4566799999999999999


Q ss_pred             EEeCCCcEEEec
Q 010816          488 SGGKDRVLKLWM  499 (500)
Q Consensus       488 s~~~D~~v~iW~  499 (500)
                      +++.||+|++|+
T Consensus       331 ~~~~Dg~i~v~d  342 (360)
T d1k32a3         331 VRKDDGKIYTFP  342 (360)
T ss_dssp             EEETTSCEEEEE
T ss_pred             EEECCCeEEEEE
Confidence            999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.4e-29  Score=238.53  Aligned_cols=264  Identities=16%  Similarity=0.176  Sum_probs=178.7

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc-----cccCcccceEEEEeeeeec--CCCCceEEEEe
Q 010816          145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-----PLSGHKKWITGISWEPVHL--NAPCRRFVSAS  217 (500)
Q Consensus       145 ~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~--~~~~~~~~s~s  217 (500)
                      ..++|.+.|.++++++  ++|+|||.|++|++||..+.+....     ....|...+..+.......  ......+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            3468999999999864  6999999999999999876543211     1112332222222211111  11123577899


Q ss_pred             CCCcEEEEECCCCeEEE-----Ee-----cCccccEEEEEeCCC------CeEEEEeCCCeEEEEeCCCCeeEE-EeecC
Q 010816          218 KDGDARIWDVSLRKCVI-----CL-----SGHTLAVTCVKWGGD------GVIYTGSQDCTIKVWETTQGKLIR-ELKGH  280 (500)
Q Consensus       218 ~dg~v~iwd~~~~~~~~-----~~-----~~h~~~v~~~~~~~~------~~l~t~~~dg~i~lwd~~~~~~~~-~~~~~  280 (500)
                      .||.|++|++.......     ..     ..+...+.++.|..+      ..+++++.||++++||+....... ....+
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            99999999975432111     11     123445666666543      357889999999999864321100 00000


Q ss_pred             CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeeccc
Q 010816          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ  360 (500)
Q Consensus       281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~  360 (500)
                      .                                               ..         ...+..      .......+.
T Consensus       167 ~-----------------------------------------------~~---------~~~~~~------~~~~~~~~~  184 (393)
T d1sq9a_         167 W-----------------------------------------------SP---------TLELQG------TVESPMTPS  184 (393)
T ss_dssp             C-----------------------------------------------CC---------EEEEEE------EECCSSSSC
T ss_pred             e-----------------------------------------------cc---------ceeccc------ceecccCCC
Confidence            0                                               00         000000      001112344


Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE------eCCcccEEEEEeeeeeeecCCCCceeeeecccccee
Q 010816          361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF------RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL  434 (500)
Q Consensus       361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (500)
                      ..+++++|+|++ +||+|+.||+|++||+.+++.+..+      .+|..+|.++                          
T Consensus       185 ~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l--------------------------  237 (393)
T d1sq9a_         185 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV--------------------------  237 (393)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE--------------------------
T ss_pred             CcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc--------------------------
Confidence            567899999998 8999999999999999999887654      4677787777                          


Q ss_pred             eEEcCCCCEEEEEECCCc---EEEEECCCccccccc-------------cCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          435 YSWSADSRLLLSGSKDST---LKVWDIRTQKLKQDL-------------PGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       435 ~~~s~~~~~l~s~s~d~~---v~iwd~~~~~~~~~~-------------~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                       +|+|+|++|++|+.|++   |++||+++++.+..+             .||.+.|++++|+||+++|+|||.|++|++|
T Consensus       238 -~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         238 -KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  316 (393)
T ss_dssp             -EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             -ccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEE
Confidence             67999999999999974   899999987765544             4899999999999999999999999999999


Q ss_pred             cC
Q 010816          499 MG  500 (500)
Q Consensus       499 ~~  500 (500)
                      +.
T Consensus       317 d~  318 (393)
T d1sq9a_         317 DV  318 (393)
T ss_dssp             ET
T ss_pred             EC
Confidence            73

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-25  Score=204.91  Aligned_cols=232  Identities=31%  Similarity=0.552  Sum_probs=189.1

Q ss_pred             ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeC
Q 010816          189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET  268 (500)
Q Consensus       189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~  268 (500)
                      ...|...|.+++|       ++++|++|+.||+|+|||+.+++++.++.+|...|++++|++ ..|++|+.|+.|++|++
T Consensus        11 ~~~~~~~V~c~~~-------d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~-~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          11 RSETSKGVYCLQY-------DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE-RVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CCSSCCCEEEEEC-------CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEES
T ss_pred             cCCCCCCEEEEEE-------cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeeccc-ceeeccccccccccccc
Confidence            3466777888765       346899999999999999999999999999999999999964 58999999999999999


Q ss_pred             CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCC
Q 010816          269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV  348 (500)
Q Consensus       269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~  348 (500)
                      ..+..................                                      ....++++..++.+.+|+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~  124 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVLHLRF--------------------------------------NNGMMVTCSKDRSIAVWDMAS  124 (293)
T ss_dssp             SSCCEEEEECCCCSCEEEEEC--------------------------------------CTTEEEEEETTSCEEEEECSS
T ss_pred             ccccccccccccccccccccc--------------------------------------cccceeecccccceeEeeccc
Confidence            988776655443332222211                                      134688999999999999765


Q ss_pred             CCCC--ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816          349 SKQP--KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (500)
Q Consensus       349 ~~~~--~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  426 (500)
                      ....  ...+..|...+..+.+.  ...+++++.|+.|++||..+++.+..+.+|...+..+                  
T Consensus       125 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~------------------  184 (293)
T d1p22a2         125 PTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL------------------  184 (293)
T ss_dssp             SSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE------------------
T ss_pred             cccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccc------------------
Confidence            4432  23456788888887775  4568899999999999999999999999988877655                  


Q ss_pred             eccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       427 ~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                                 ++++.++++++.|+.|++||+++.+.+....+|...+..  +++++.+|++|+.||+|++|+
T Consensus       185 -----------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd  244 (293)
T d1p22a2         185 -----------QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWD  244 (293)
T ss_dssp             -----------EEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEE
T ss_pred             -----------cCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEE
Confidence                       345679999999999999999999998888899888875  466788999999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=3.4e-26  Score=215.58  Aligned_cols=300  Identities=12%  Similarity=0.029  Sum_probs=204.4

Q ss_pred             CCcccEEEEEEcCCCCeEEEEeCCC--cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816          106 GHTEAVLSVAFSPDGRQLASGSGDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK  183 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~  183 (500)
                      +|...|.+++|+|||++|++++.+.  .|++||+++++. ..+..|...|.+++|+|||++|++++.++.+++|+..+++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            6999999999999999999877553  799999988765 4577899999999999999999999999999999998876


Q ss_pred             cccccccCcccceEEEEeeeeecCCCCceEEEE----------eCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-
Q 010816          184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA----------SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-  252 (500)
Q Consensus       184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~----------s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-  252 (500)
                      ... .+..|...+.+++|+|     +++.++.+          ..++.+++||+.+++.... ..|...+.++.|+++| 
T Consensus       119 ~~~-~~~~~~~~~~~~~~sp-----dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~  191 (360)
T d1k32a3         119 PTV-IERSREAMITDFTISD-----NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSK  191 (360)
T ss_dssp             EEE-EEECSSSCCCCEEECT-----TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSC
T ss_pred             eee-eeecccccccchhhcc-----ceeeeeeeccccccceeeccccceeeeccccCceeee-cccccccccccccCCCC
Confidence            543 4566777788888876     44566643          4456799999998876553 4566778889999997 


Q ss_pred             eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (500)
Q Consensus       253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (500)
                      .|++++.|+.+++||........   .....+..+.+++.... ...+...+                         ..+
T Consensus       192 ~l~~~s~~~~~~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~s~~~-------------------------~~~  242 (360)
T d1k32a3         192 NLYYLSYRSLDPSPDRVVLNFSF---EVVSKPFVIPLIPGSPN-PTKLVPRS-------------------------MTS  242 (360)
T ss_dssp             EEEEEESCCCCCEECSSSSCEEC---CSCBEEEEEESSTTCCC-GGGCCCGG-------------------------GSC
T ss_pred             EEEEEeCCCceEcccccccceee---ccccceEEEecccCccc-cceECCCc-------------------------Ccc
Confidence            58889999999999976543221   12222333333222100 00000000                         000


Q ss_pred             EEeeCCC---eEEEEcCCCCCCCceeeecccCcEEEEEECCC---CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816          333 VSGSDDF---TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD---GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY  406 (500)
Q Consensus       333 ~s~s~d~---~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~---g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~  406 (500)
                      +++..+.   ..++|...........+..+.+.+..+.+.+.   +.++++++.++.|++||+.+++...    |.+.+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----~~~~v~  318 (360)
T d1k32a3         243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKNNLT  318 (360)
T ss_dssp             CCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE----EEEEEE
T ss_pred             cccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE----ecCCcC
Confidence            1111100   01122222222222334455555555555544   4578889999999999999876532    333344


Q ss_pred             EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccC
Q 010816          407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE  473 (500)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~  473 (500)
                      .+                           +|||||++|++++.||.|++||+++++....+..+..+
T Consensus       319 ~~---------------------------~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~  358 (360)
T d1k32a3         319 DL---------------------------RLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP  358 (360)
T ss_dssp             EE---------------------------EECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred             EE---------------------------EECCCCCEEEEEECCCeEEEEECCCCCcceEEEecccc
Confidence            43                           67999999999999999999999998877766655544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=4.2e-25  Score=213.42  Aligned_cols=310  Identities=14%  Similarity=0.025  Sum_probs=198.2

Q ss_pred             eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc----cccCcccceE
Q 010816          122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN----PLSGHKKWIT  197 (500)
Q Consensus       122 ~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~~v~  197 (500)
                      ++++++.||+|+|||+.+++.+..+..|. .+..++|+|||++|++++.|++|++||+.+++....    ...+|...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            56788899999999999999999988775 589999999999999999999999999998874321    1234555555


Q ss_pred             EEEeeeeecCCCCceE-EEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeE
Q 010816          198 GISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLI  274 (500)
Q Consensus       198 ~~~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~  274 (500)
                      ++.|+|     +++++ +++..++.+++||..++.+...+.+|...+....+.+++  ..+.++.|+...++.......+
T Consensus       113 s~~~sp-----DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i  187 (426)
T d1hzua2         113 SKFKGY-----EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  187 (426)
T ss_dssp             CCSTTC-----TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eeeecC-----CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            555544     55555 566689999999999999888887776555444444333  2344455554444433322211


Q ss_pred             EE------------eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEE
Q 010816          275 RE------------LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF  342 (500)
Q Consensus       275 ~~------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~  342 (500)
                      ..            ...+...+..+.++++.                                   ...+++...+..+.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------------------------------~~~~~a~~~~~~~~  232 (426)
T d1hzua2         188 LLVNYKDIDNLTVTSIGAAPFLADGGWDSSH-----------------------------------RYFMTAANNSNKVA  232 (426)
T ss_dssp             EEEECSSSSSCEEEEEECCSSEEEEEECTTS-----------------------------------CEEEEEETTCSEEE
T ss_pred             EEEEeccccceeeEEeccCCccEeeeECCCC-----------------------------------cEEEeeeeccccee
Confidence            11            12233334444444431                                   12334445566777


Q ss_pred             EEcCCCCCCCceee-ecccCcEEEEEECCC--CCEE-EEEeCCCcEEEEeCCC-------CceEEEEeCCcccEEEEEee
Q 010816          343 LWEPAVSKQPKTRM-TGHQQLVNHVYFSPD--GQWV-ASASFDKSIKLWNGTT-------GKFVAVFRGHVGPVYQIRFE  411 (500)
Q Consensus       343 ~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~--g~~l-asgs~Dg~i~lwd~~~-------~~~~~~~~~h~~~v~~~~~~  411 (500)
                      +++........... ..+......+.+.+.  +... ++.+.|+.+.+|+...       ++....+++|...+..+   
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v---  309 (426)
T d1hzua2         233 VIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI---  309 (426)
T ss_dssp             EEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCE---
T ss_pred             eeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEE---
Confidence            77765332111110 011111112222221  1111 2233466666666443       46778888888776655   


Q ss_pred             eeeeecCCCCceeeeeccccceeeEEcCCCCEEEE-------EECCCcEEEEECCCcccccc---------ccCcccCEE
Q 010816          412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS-------GSKDSTLKVWDIRTQKLKQD---------LPGHADEVF  475 (500)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-------~s~d~~v~iwd~~~~~~~~~---------~~~h~~~V~  475 (500)
                                              +|+|++++|++       ++.|++|+|||+++++...+         +..|..+|.
T Consensus       310 ------------------------~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~  365 (426)
T d1hzua2         310 ------------------------KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV  365 (426)
T ss_dssp             ------------------------ECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEE
T ss_pred             ------------------------EcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEE
Confidence                                    56999999994       55688999999998776543         334667899


Q ss_pred             EEEEcCCCCEEE-EE----eCCCcEEEec
Q 010816          476 AVDWSPDGEKVA-SG----GKDRVLKLWM  499 (500)
Q Consensus       476 ~l~~s~dg~~l~-s~----~~D~~v~iW~  499 (500)
                      .++|||||++++ ++    +.|++|+||+
T Consensus       366 ~~~fSpDGk~i~vs~~~~~~~~~~i~v~D  394 (426)
T d1hzua2         366 QPEYNKRGDEVWFSVWNGKNDSSALVVVD  394 (426)
T ss_dssp             EEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred             EEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence            999999999774 43    4688999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=1e-24  Score=210.71  Aligned_cols=331  Identities=13%  Similarity=0.068  Sum_probs=213.9

Q ss_pred             EEEeecceEeEEecc--cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEE-----ecCCCCCEEEE
Q 010816           84 IVYQPQAVFRIRPVN--RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-----CTGHKNWVLCI  156 (500)
Q Consensus        84 ~~~~~~~~~~~~~~~--~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~-----~~~h~~~v~~v  156 (500)
                      +........+++...  ++..++.+|. .+..++|||||++|++++.|++|++||+.++++...     ..+|.+.+.++
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~  114 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK  114 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence            334444555555432  3556676664 589999999999999999999999999998875432     23577778888


Q ss_pred             EEcCCCCEEEE-EeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE-----------
Q 010816          157 AWSADGKHLVS-GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI-----------  224 (500)
Q Consensus       157 ~~s~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i-----------  224 (500)
                      +|+|||++|++ +..++.+++||..++.... ....|...+....+.+.    .....+..+.|+...+           
T Consensus       115 ~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~i~~s~d~~~~~~~~~~~~~i~~  189 (426)
T d1hzua2         115 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ-IVSTRGMTVDTQTYHPE----PRVAAIIASHEHPEFIVNVKETGKVLL  189 (426)
T ss_dssp             STTCTTTEEEEEEEESSEEEEEETTTCCEEE-EEECCEECSSSCCEESC----CCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eecCCCCEEEEeecCCCeEEEEcCCccceeE-EeeccCCCccceeecCC----CceeEEEECCCCCEEEEecCCCCeEEE
Confidence            99999998755 5578999999999876543 23334333333333221    1112334444444433           


Q ss_pred             EECCCCeE-EEEecCccccEEEEEeCCCCe-E-EEEeCCCeEEEEeCCCCeeEEEeecCCc--eEEEEEecCcceeeecc
Q 010816          225 WDVSLRKC-VICLSGHTLAVTCVKWGGDGV-I-YTGSQDCTIKVWETTQGKLIRELKGHGH--WVNSLALSTEYALRTGA  299 (500)
Q Consensus       225 wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-l-~t~~~dg~i~lwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~  299 (500)
                      ++...... .....++...+..+.|++++. + ++...+..+.+++..+++.+........  +.....+...       
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  262 (426)
T d1hzua2         190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP-------  262 (426)
T ss_dssp             EECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEET-------
T ss_pred             EEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecC-------
Confidence            33332221 112234556678889998874 3 3455677899999999988776543221  1111111100       


Q ss_pred             ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC------CCceeeecccCcEEEEEECCCCC
Q 010816          300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK------QPKTRMTGHQQLVNHVYFSPDGQ  373 (500)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~------~~~~~~~~h~~~v~~l~~sp~g~  373 (500)
                                                .......++.+.|+.+.+|+.....      .....+.+|...+..++|+|||+
T Consensus       263 --------------------------~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~  316 (426)
T d1hzua2         263 --------------------------KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS  316 (426)
T ss_dssp             --------------------------TTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCS
T ss_pred             --------------------------CCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCc
Confidence                                      0001123445667888888754322      23456789999999999999999


Q ss_pred             EEEE-------EeCCCcEEEEeCCCCceEEEEeC---------CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816          374 WVAS-------ASFDKSIKLWNGTTGKFVAVFRG---------HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (500)
Q Consensus       374 ~las-------gs~Dg~i~lwd~~~~~~~~~~~~---------h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (500)
                      +|++       ++.|++|+|||+.+++....+..         |...+..                           ++|
T Consensus       317 ~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~---------------------------~~f  369 (426)
T d1hzua2         317 HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ---------------------------PEY  369 (426)
T ss_dssp             EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEE---------------------------EEE
T ss_pred             eEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEE---------------------------EEE
Confidence            9994       56689999999999887654422         2222333                           368


Q ss_pred             cCCCCEEEEE-----ECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEE
Q 010816          438 SADSRLLLSG-----SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV  486 (500)
Q Consensus       438 s~~~~~l~s~-----s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l  486 (500)
                      ||||++++.+     +.|+.|+|||.++.++...+.++.      .++|+|++-
T Consensus       370 SpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         370 NKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             CSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred             CCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence            9999977533     357889999999999888887764      236777664

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=1.1e-24  Score=210.04  Aligned_cols=331  Identities=13%  Similarity=-0.024  Sum_probs=208.0

Q ss_pred             CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc----cccCcccce
Q 010816          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN----PLSGHKKWI  196 (500)
Q Consensus       121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~~v  196 (500)
                      -++++.+.||+|.|||..+++.+..+..|. .+..++|||||++|++++.|++|++||+.+++....    ...+|...+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            345888999999999999999999988764 699999999999999999999999999988764221    112333333


Q ss_pred             EEEEeeeeecCCCCce-EEEEeCCCcEEEEECCCCeEEEEecCcc-----------ccEEEEEeCCCC--eEEEEeCCCe
Q 010816          197 TGISWEPVHLNAPCRR-FVSASKDGDARIWDVSLRKCVICLSGHT-----------LAVTCVKWGGDG--VIYTGSQDCT  262 (500)
Q Consensus       197 ~~~~~~~~~~~~~~~~-~~s~s~dg~v~iwd~~~~~~~~~~~~h~-----------~~v~~~~~~~~~--~l~t~~~dg~  262 (500)
                      .+..|     ++++++ +++++.++++++||..+++++..+..|.           .....+.+++++  .+++...++.
T Consensus       112 ~s~~~-----SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~  186 (432)
T d1qksa2         112 TSKME-----GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  186 (432)
T ss_dssp             ECCST-----TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             Eeccc-----CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe
Confidence            33333     346665 4788899999999999999888776543           345567788877  3566778899


Q ss_pred             EEEEeCCCCeeEEEee-cCCceEEEEEecCcceee-eccccCCCCCCCCHHHHHHH----------HHHhhhhhcCCCCc
Q 010816          263 IKVWETTQGKLIRELK-GHGHWVNSLALSTEYALR-TGAFDHTGKQYSSPEEMKKA----------ALERYNKIKGNAPE  330 (500)
Q Consensus       263 i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  330 (500)
                      |.+||..+++...... .++.....++++|+.... .+..+...............          ..............
T Consensus       187 i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g  266 (432)
T d1qksa2         187 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG  266 (432)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred             EEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCC
Confidence            9999998876544332 344556778888875321 11111000000000000000          00000000000000


Q ss_pred             E-EEE-eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816          331 R-LVS-GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (500)
Q Consensus       331 ~-~~s-~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~  408 (500)
                      . ..+ ...++.+.+|+....     ....|...+....++|++..+++++.|...++|+..+..      .|...    
T Consensus       267 ~~~~~~~lg~~~v~~~~~~~~-----~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~----  331 (432)
T d1qksa2         267 PVWATSHMGDDSVALIGTDPE-----GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEI----  331 (432)
T ss_dssp             EEEEEEBSSSSEEEEEECCTT-----TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHH----
T ss_pred             ceecccccCCceEEecccccc-----cccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------CCCCe----
Confidence            1 111 123556666653221     123445556667777777777777777777777644321      11110    


Q ss_pred             EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEE
Q 010816          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVAS  488 (500)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s  488 (500)
                                             ...++ .||++.|++++.|+.+++|++.++.   .+..|..+|.+++|||||++++.
T Consensus       332 -----------------------~~sv~-vpDg~~la~~s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~DG~~v~~  384 (432)
T d1qksa2         332 -----------------------SGSVA-VFDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWF  384 (432)
T ss_dssp             -----------------------HTCEE-EEEGGGCCCSSSCCCEEEECHHHHH---TCCSSCCEEEEEEECTTSSEEEE
T ss_pred             -----------------------eeEEE-EEechhhcccccCCceEeccccccc---ccCCCCCcEEEeEECCCCCEEEE
Confidence                                   01112 3899999999999999999975543   34467778999999999998855


Q ss_pred             Ee-----CCCcEEEec
Q 010816          489 GG-----KDRVLKLWM  499 (500)
Q Consensus       489 ~~-----~D~~v~iW~  499 (500)
                      +.     .|+.|+||+
T Consensus       385 S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         385 SVWNGKDQESALVVVD  400 (432)
T ss_dssp             EEECCTTSCCEEEEEE
T ss_pred             EEecCCCCCCcEEEEE
Confidence            53     468899997

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=3.6e-23  Score=199.43  Aligned_cols=343  Identities=15%  Similarity=0.054  Sum_probs=211.9

Q ss_pred             EEEEEeecceEeEEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee--EE---ecCCCCCEE
Q 010816           82 LSIVYQPQAVFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FK---CTGHKNWVL  154 (500)
Q Consensus        82 ~~~~~~~~~~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~--~~---~~~h~~~v~  154 (500)
                      +.+...+.....++..  .++..++..| ..+..++|||||++|++++.|++|++||+.+++..  ..   ..+|.+.+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            3344445555555533  2455666666 36999999999999999999999999999876542  22   235667777


Q ss_pred             EEEEcCCCCEE-EEEeCCCeEEEEeCCCCCcccccccC-----------cccceEEEEeeeeecCCCCc-eEEEEeCCCc
Q 010816          155 CIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSG-----------HKKWITGISWEPVHLNAPCR-RFVSASKDGD  221 (500)
Q Consensus       155 ~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~-~~~s~s~dg~  221 (500)
                      +..|+|||++| ++++.+++|++||..+++.... +..           +.....++.++|     ++. .+++.+.++.
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~s~-----dg~~~~vs~~~~~~  186 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI-QSTRGMTYDEQEYHPEPRVAAILASH-----YRPEFIVNVKETGK  186 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE-EECCEECTTTCCEESCCCEEEEEECS-----SSSEEEEEETTTTE
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceee-eccCCccccceeccCCCceeEEEECC-----CCCEEEEEEccCCe
Confidence            78889999986 6788899999999998875432 122           222333444443     333 4567778899


Q ss_pred             EEEEECCCCeEEEEec-CccccEEEEEeCCCCe-EEEE-eCCCeEEEEeCCCCeeEEEeecC-----CceEEEEEecCcc
Q 010816          222 ARIWDVSLRKCVICLS-GHTLAVTCVKWGGDGV-IYTG-SQDCTIKVWETTQGKLIRELKGH-----GHWVNSLALSTEY  293 (500)
Q Consensus       222 v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~t~-~~dg~i~lwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~  293 (500)
                      |.+||....+...... .+.....++.|++++. ++++ ..++.+.++|..+++.+..+...     .............
T Consensus       187 i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g  266 (432)
T d1qksa2         187 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG  266 (432)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred             EEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCC
Confidence            9999998776544322 3445678899999984 4444 45678999999988877655321     1111111111111


Q ss_pred             eeeeccc--cCCCCCC-CCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC
Q 010816          294 ALRTGAF--DHTGKQY-SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (500)
Q Consensus       294 ~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp  370 (500)
                      .......  +.....+ ................+....+..+++++.+.+.++|+....       ..|.....++++ |
T Consensus       267 ~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~-------~~~~~~~~sv~v-p  338 (432)
T d1qksa2         267 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL-------NPEAEISGSVAV-F  338 (432)
T ss_dssp             EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT-------CSSHHHHTCEEE-E
T ss_pred             ceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccC-------CCCCCeeeEEEE-E
Confidence            0000000  0000000 000000000000011123333456778888999999975322       223333345555 9


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE--
Q 010816          371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--  448 (500)
Q Consensus       371 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s--  448 (500)
                      |++.|++++.|+.+++|+..++..+   ..|...+..+                           +|||||++++.+.  
T Consensus       339 Dg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~---------------------------~fS~DG~~v~~S~~~  388 (432)
T d1qksa2         339 DIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQG---------------------------EFNKDGTEVWFSVWN  388 (432)
T ss_dssp             EGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEE---------------------------EECTTSSEEEEEEEC
T ss_pred             echhhcccccCCceEeccccccccc---CCCCCcEEEe---------------------------EECCCCCEEEEEEec
Confidence            9999999999999999997654322   2455555544                           6799999886654  


Q ss_pred             ---CCCcEEEEECCCccccccccC
Q 010816          449 ---KDSTLKVWDIRTQKLKQDLPG  469 (500)
Q Consensus       449 ---~d~~v~iwd~~~~~~~~~~~~  469 (500)
                         .|+.|+|||.++.++...+.+
T Consensus       389 ~~~~~g~i~i~D~~T~k~~~~i~~  412 (432)
T d1qksa2         389 GKDQESALVVVDDKTLELKHVIKD  412 (432)
T ss_dssp             CTTSCCEEEEEETTTTEEEEEECC
T ss_pred             CCCCCCcEEEEECCCceEEeEecC
Confidence               468899999999998776655

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=1.7e-20  Score=171.48  Aligned_cols=270  Identities=13%  Similarity=0.140  Sum_probs=194.7

Q ss_pred             EEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCcccccccCcccceEEEEee
Q 010816          124 ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE  202 (500)
Q Consensus       124 at~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~  202 (500)
                      ++++.|++|.|||+++++.+..+... ..+..++|+|||++| ++++.++.|++||+.+++.... +..+. ...++.|.
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-~~~~~-~~~~~~~~   82 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-VPAGS-SPQGVAVS   82 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-EECSS-SEEEEEEC
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-eeccc-cccccccc
Confidence            46778999999999999887777543 457899999999987 5677899999999998876542 33333 34566665


Q ss_pred             eeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe--EEEEeCCCeEEEEeCCCCeeEEEeecC
Q 010816          203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV--IYTGSQDCTIKVWETTQGKLIRELKGH  280 (500)
Q Consensus       203 ~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~t~~~dg~i~lwd~~~~~~~~~~~~~  280 (500)
                      +.    ....++++..++.+.+|+...++....+..+. ...++.|++++.  ++++..++.+.+|+..+++....+..+
T Consensus        83 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
T d1l0qa2          83 PD----GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (301)
T ss_dssp             TT----SSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             cc----cccccccccccceeeecccccceeeeeccccc-cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC
Confidence            42    22356677788899999999998888776554 457788988874  456777899999999999888777654


Q ss_pred             CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe-eCCCeEEEEcCCCCCCCceeeecc
Q 010816          281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG-SDDFTMFLWEPAVSKQPKTRMTGH  359 (500)
Q Consensus       281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-s~d~~v~~wd~~~~~~~~~~~~~h  359 (500)
                      .. ...++++++                                    ...++++ ..++.+.+|+.....  .......
T Consensus       158 ~~-~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  198 (301)
T d1l0qa2         158 RS-PKGIAVTPD------------------------------------GTKVYVANFDSMSISVIDTVTNS--VIDTVKV  198 (301)
T ss_dssp             SS-EEEEEECTT------------------------------------SSEEEEEETTTTEEEEEETTTTE--EEEEEEC
T ss_pred             CC-ceEEEeecc------------------------------------ccceeeeccccccccccccccee--eeecccc
Confidence            33 445555543                                    2234444 445667777644321  2222233


Q ss_pred             cCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816          360 QQLVNHVYFSPDGQWVASASF---DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS  436 (500)
Q Consensus       360 ~~~v~~l~~sp~g~~lasgs~---Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (500)
                      ...+..++|++++..++.++.   ++.|++||+.+++++..+..+.. +..+                           +
T Consensus       199 ~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~-~~~v---------------------------a  250 (301)
T d1l0qa2         199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGI---------------------------A  250 (301)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEE---------------------------E
T ss_pred             cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCC-EEEE---------------------------E
Confidence            456788999999998876543   46899999999998877765433 3333                           6


Q ss_pred             EcCCCCEE-EEEECCCcEEEEECCCcccccccc
Q 010816          437 WSADSRLL-LSGSKDSTLKVWDIRTQKLKQDLP  468 (500)
Q Consensus       437 ~s~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~  468 (500)
                      |+|||++| ++++.|+.|++||+++++++.+++
T Consensus       251 ~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         251 VTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            79999976 567789999999999998877664

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=3.9e-22  Score=186.16  Aligned_cols=310  Identities=10%  Similarity=0.023  Sum_probs=202.0

Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec-CCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCccccccc-
Q 010816          114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLS-  190 (500)
Q Consensus       114 ~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~-  190 (500)
                      ++|++++++|++++.|++|.|||+.+++.+..++ .|...+.+++|+|||+++ ++++.++.|.+||+.+++....... 
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4789999999999999999999999999888776 456678899999999987 5566789999999998865432211 


Q ss_pred             ----CcccceEEEEeeeeecCCCCceEEEEe------------CCCcEEEEECCCCeEEEEecCc--cccEEEEEeCCCC
Q 010816          191 ----GHKKWITGISWEPVHLNAPCRRFVSAS------------KDGDARIWDVSLRKCVICLSGH--TLAVTCVKWGGDG  252 (500)
Q Consensus       191 ----~~~~~v~~~~~~~~~~~~~~~~~~s~s------------~dg~v~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~  252 (500)
                          .+...+..+.|+|     ++++++.++            .+..+.+||..+++....+..+  ...+..+.+++++
T Consensus        82 ~~~~~~~~~~~~v~~s~-----DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISP-----DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  156 (346)
T ss_dssp             CSTTEEEECSSCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             ccccccCCceEEEEEec-----CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence                1122234455544     445554443            5778899998876544333222  1234445667777


Q ss_pred             eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816          253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL  332 (500)
Q Consensus       253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (500)
                      .++..+  +.+.+|+..+++.+..+..+.. ...+.++++................ .         ............+
T Consensus       157 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~  223 (346)
T d1jmxb_         157 SLYVAG--PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSM-L---------YTIARFKDDKQDP  223 (346)
T ss_dssp             CEEEES--SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEE-E---------EEEEEC-------
T ss_pred             EEEEeC--CcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEe-e---------eeeeeeccCceeE
Confidence            766654  4588999999888877654432 2222233321110000000000000 0         0000000011123


Q ss_pred             EEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeee
Q 010816          333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL  412 (500)
Q Consensus       333 ~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  412 (500)
                      .++..+..+.+|+.............|...+..+.+++++.+++.... +.|++||..+++.+..+.. ...+.++    
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~-~~~~~~v----  297 (346)
T d1jmxb_         224 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL-DHTYYCV----  297 (346)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC-SSCCCEE----
T ss_pred             eeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcC-CCCEEEE----
Confidence            445556678899977655555556778888999999999888887654 5799999999998876653 2233333    


Q ss_pred             eeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCc
Q 010816          413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH  470 (500)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h  470 (500)
                                             +|+|||++|++++.|+.|++||+++++.+..++..
T Consensus       298 -----------------------a~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         298 -----------------------AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             -----------------------EECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             -----------------------EEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence                                   67999999999999999999999999988776543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.5e-21  Score=181.51  Aligned_cols=296  Identities=11%  Similarity=0.068  Sum_probs=193.9

Q ss_pred             CeEEEEeCCCcEEEEeCCCCceeEEecC--CCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCcccccccCcc----
Q 010816          121 RQLASGSGDTTVRLWDLNTQTPMFKCTG--HKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHK----  193 (500)
Q Consensus       121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~----  193 (500)
                      +++++++.|++|+|||+.+.+.+..+..  +...+.+++|+|||++| ++++.++.|.+||+.+++.... +..+.    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~-~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR-IDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE-EECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEE-EecCCCccc
Confidence            4799999999999999999988877754  34567899999999987 5667899999999999876432 22221    


Q ss_pred             -cceEEEEeeeeecCCCCceEEEEe------------CCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeC
Q 010816          194 -KWITGISWEPVHLNAPCRRFVSAS------------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQ  259 (500)
Q Consensus       194 -~~v~~~~~~~~~~~~~~~~~~s~s------------~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~  259 (500)
                       ....++.|+|     ++..+++++            .+..+.+||..+++....+..+ ..+..++|++++. +++++.
T Consensus        81 ~~~~~~v~~s~-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~  154 (337)
T d1pbyb_          81 VKSLFGAALSP-----DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGR  154 (337)
T ss_dssp             EECTTCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESS
T ss_pred             ccceeeEEEcC-----CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcC
Confidence             2233445544     445555443            5678999999999888777644 4567889999884 556654


Q ss_pred             CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816          260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF  339 (500)
Q Consensus       260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~  339 (500)
                        .+.+||..+++....+..+.... ...+.++.....  .........          ................++.++
T Consensus       155 --~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  219 (337)
T d1pbyb_         155 --DLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVW--NQHESSGVM----------ATPFYTARKDIDPADPTAYRT  219 (337)
T ss_dssp             --SEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCC--CCCTTTTEE----------EEEEEEEBTTSCTTSGGGEEE
T ss_pred             --CcceeeeecCcEEEEeecCCccc-cceecCCcceee--cccccccee----------eeeeeeeeeccceeeecccCc
Confidence              47789999988877665432211 000111000000  000000000          000000000000011223445


Q ss_pred             eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCC
Q 010816          340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP  419 (500)
Q Consensus       340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  419 (500)
                      .+.+|+.............+...+..++++|++.+++.+  ++.|++||+.+++.+..+.. ...+.++           
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~-~~~~~~~-----------  285 (337)
T d1pbyb_         220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSV-----------  285 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEE-----------
T ss_pred             cEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC-CCCEEEE-----------
Confidence            688888765554444566777888999999999998766  58899999999998876643 2233333           


Q ss_pred             CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccccc
Q 010816          420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP  468 (500)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  468 (500)
                                      +|+|||++|++++.|+.|++||.++.+.+..++
T Consensus       286 ----------------~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         286 ----------------NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             ----------------EECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             ----------------EECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence                            679999999999999999999999988876654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=2.6e-19  Score=163.37  Aligned_cols=260  Identities=18%  Similarity=0.198  Sum_probs=190.5

Q ss_pred             EEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceE-EEEeCCCcEEEEECCCCeEEEEecCccccEE
Q 010816          166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVT  244 (500)
Q Consensus       166 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~  244 (500)
                      ++++.|++|.+||+++++..... .. .....+++|+|     +++++ ++++.++.|++||+.+++.+..+..+.. ..
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i-~~-g~~p~~va~sp-----dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~   77 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATI-PV-GSNPMGAVISP-----DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQ   77 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEE-EC-SSSEEEEEECT-----TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EE
T ss_pred             EEECCCCEEEEEECCCCeEEEEE-EC-CCCceEEEEeC-----CCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cc
Confidence            46778999999999998765432 21 23356777765     44554 6778899999999999999988877764 57


Q ss_pred             EEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816          245 CVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN  322 (500)
Q Consensus       245 ~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (500)
                      .+.|++++  .++++..++.+.+|+..+++....+..+.. ...+.++++.                             
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg-----------------------------  127 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS-PLGLALSPDG-----------------------------  127 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTS-----------------------------
T ss_pred             ccccccccccccccccccceeeecccccceeeeecccccc-ceEEEeecCC-----------------------------
Confidence            78888876  355677888999999999988887765543 4555565542                             


Q ss_pred             hhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC-CcEEEEeCCCCceEEEEeCC
Q 010816          323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAVFRGH  401 (500)
Q Consensus       323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D-g~i~lwd~~~~~~~~~~~~h  401 (500)
                            ...++++..++.+.+|+......  .....+...+..++++|++..+++++.+ +.+.+|+....+....+..+
T Consensus       128 ------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (301)
T d1l0qa2         128 ------KKLYVTNNGDKTVSVINTVTKAV--INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE  199 (301)
T ss_dssp             ------SEEEEEETTTTEEEEEETTTTEE--EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             ------Ceeeeeeccccceeeeeccccce--eeecccCCCceEEEeeccccceeeecccccccccccccceeeeeccccc
Confidence                  22456777888999998754322  2223344568899999999988877765 66778888777776665554


Q ss_pred             cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC---CCcEEEEECCCccccccccCcccCEEEEE
Q 010816          402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK---DSTLKVWDIRTQKLKQDLPGHADEVFAVD  478 (500)
Q Consensus       402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~h~~~V~~l~  478 (500)
                      ..+ ..                           .++++++..++.++.   ++.|++||+.+++....+..+ ..+.+++
T Consensus       200 ~~~-~~---------------------------~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va  250 (301)
T d1l0qa2         200 AAP-SG---------------------------IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIA  250 (301)
T ss_dssp             SEE-EE---------------------------EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEE
T ss_pred             CCc-ce---------------------------eeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEE
Confidence            432 12                           256889988776543   468999999999888777644 5689999


Q ss_pred             EcCCCCEE-EEEeCCCcEEEecC
Q 010816          479 WSPDGEKV-ASGGKDRVLKLWMG  500 (500)
Q Consensus       479 ~s~dg~~l-~s~~~D~~v~iW~~  500 (500)
                      |+|||++| ++++.|++|++|+.
T Consensus       251 ~spdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         251 VTPDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEET
T ss_pred             EeCCCCEEEEEECCCCeEEEEEC
Confidence            99999987 67788999999973

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.86  E-value=1.7e-18  Score=163.43  Aligned_cols=301  Identities=12%  Similarity=0.013  Sum_probs=196.2

Q ss_pred             cCCcccEEEEEEcCCCCeEEEE-----eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------
Q 010816          105 AGHTEAVLSVAFSPDGRQLASG-----SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------  169 (500)
Q Consensus       105 ~gh~~~V~~~~~sp~~~~lat~-----~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------  169 (500)
                      .+|.+++.+++++|||++++..     +.++.+.+||..+++.+..+..+..+  .+.|+|||++|++++          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            4678899999999999998765     23467999999999988887766543  799999999998875          


Q ss_pred             CCCeEEEEeCCCCCcccccccCcccceE-------EEEeeeeecCCCCceEE--EEeCCCcEEEEECCCCeEEEEecCcc
Q 010816          170 KAGELQCWDPQTGKPSGNPLSGHKKWIT-------GISWEPVHLNAPCRRFV--SASKDGDARIWDVSLRKCVICLSGHT  240 (500)
Q Consensus       170 ~d~~i~~wd~~~~~~~~~~~~~~~~~v~-------~~~~~~~~~~~~~~~~~--s~s~dg~v~iwd~~~~~~~~~~~~h~  240 (500)
                      .++.|.+||..+++.... +..+.....       .+.|.+     +++.++  ....++.+.+|+....+.....    
T Consensus        95 ~~~~v~v~D~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~s~-----dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----  164 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIAD-IELPDAPRFDVGPYSWMNANTP-----NNADLLFFQFAAGPAVGLVVQGGSSDDQLL----  164 (373)
T ss_pred             cceEEEEEECCCCcEEEE-EecCCcceeEeccCCCcEEEEe-----CCCcEEEEEEcCCCceEEeeccCCeEEEEe----
Confidence            457899999998876432 222222222       233333     223332  3344567888887776654332    


Q ss_pred             ccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCce------EEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816          241 LAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHW------VNSLALSTEYALRTGAFDHTGKQYSSPEE  312 (500)
Q Consensus       241 ~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (500)
                      ....++.+++++  .+++.+.|+.+.+||...+........+...      .......                      
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  222 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN----------------------  222 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC----------------------
Confidence            334567777765  4678899999999999887766554322110      1111111                      


Q ss_pred             HHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCc-eeeec----------ccCcEEEEEECCCCCE-------
Q 010816          313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRMTG----------HQQLVNHVYFSPDGQW-------  374 (500)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~-~~~~~----------h~~~v~~l~~sp~g~~-------  374 (500)
                                     ....++..+.++.+++|+........ .....          .......++++|++..       
T Consensus       223 ---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  287 (373)
T d2madh_         223 ---------------KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE  287 (373)
T ss_pred             ---------------CCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCC
Confidence                           12245556677777777754322100 00001          1122334455555554       


Q ss_pred             ---EEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC--EEEEEEC
Q 010816          375 ---VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR--LLLSGSK  449 (500)
Q Consensus       375 ---lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~s~s~  449 (500)
                         +++...++.+.+||..+++.+..+. +...+..+                           +|+|||+  ++++++.
T Consensus       288 ~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~---------------------------a~spDG~~~l~vt~~~  339 (373)
T d2madh_         288 QSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAI---------------------------SVAQDGGPDLYALSAG  339 (373)
T ss_pred             CceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEE---------------------------EECCCCCEEEEEEeCC
Confidence               4455667789999999998877654 33334443                           6799998  4568899


Q ss_pred             CCcEEEEECCCccccccccCcccCEEEEEEcCC
Q 010816          450 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD  482 (500)
Q Consensus       450 d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d  482 (500)
                      |++|++||+.+++.++.+.++......|++.++
T Consensus       340 d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         340 TEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            999999999999999999888777777776553

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=7.3e-18  Score=156.10  Aligned_cols=263  Identities=11%  Similarity=0.074  Sum_probs=170.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCccccc-ccCcccceEEEEeeeeecCCCCceE-EEEeCCCcEEEEECCCCeEEEEecCcc
Q 010816          163 KHLVSGSKAGELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHT  240 (500)
Q Consensus       163 ~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~~~~~~~h~  240 (500)
                      +++++++.|++|++||+++++..... ...+...+.++.++|     +++++ ++++.++.|.+||+.+++.+..+..+.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp-----Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-----GGRIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-----TSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECC-----CCCEEEEEECCCCeEEEEECCCCcEEEEEecCC
Confidence            47999999999999999998765432 222334566777765     45554 677889999999999999888776554


Q ss_pred             cc-----EEEEEeCCCCe-EEEEe------------CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816          241 LA-----VTCVKWGGDGV-IYTGS------------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH  302 (500)
Q Consensus       241 ~~-----v~~~~~~~~~~-l~t~~------------~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  302 (500)
                      ..     +..++|++++. ++++.            .+..+.+||..+++....+..+ ..+..++++++.         
T Consensus        77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg---------  146 (337)
T d1pbyb_          77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDG---------  146 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTS---------
T ss_pred             CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCC---------
Confidence            32     34678888873 44443            4678999999998887777643 335566666542         


Q ss_pred             CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeeccc----------------------
Q 010816          303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ----------------------  360 (500)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~----------------------  360 (500)
                                                 ..+++++.+  +.+||....... ..+..+.                      
T Consensus       147 ---------------------------~~l~~~~~~--~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (337)
T d1pbyb_         147 ---------------------------SKLYGLGRD--LHVMDPEAGTLV-EDKPIQSWEAETYAQPDVLAVWNQHESSG  196 (337)
T ss_dssp             ---------------------------SCEEEESSS--EEEEETTTTEEE-EEECSTTTTTTTBCCCBCCCCCCCCTTTT
T ss_pred             ---------------------------CEEEEEcCC--cceeeeecCcEE-EEeecCCccccceecCCcceeeccccccc
Confidence                                       335555433  556765432211 1110000                      


Q ss_pred             -CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816          361 -QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS  438 (500)
Q Consensus       361 -~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  438 (500)
                       ..........+...+..++.++.+.+|+..++..... +..+......                           .+++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~  249 (337)
T d1pbyb_         197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS---------------------------TAVN  249 (337)
T ss_dssp             EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEE---------------------------EEEC
T ss_pred             eeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEE---------------------------EEec
Confidence             0011111122222223334455677787777665432 2222222222                           2568


Q ss_pred             CCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          439 ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       439 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                      |++.+++.+  ++.|++||+++++.+..+. +...+.+++|+|||++|++++.|++|++|+.
T Consensus       250 ~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         250 PAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             TTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             ccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            899888766  4789999999999887764 5567899999999999999999999999973

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=7e-19  Score=163.76  Aligned_cols=270  Identities=16%  Similarity=0.130  Sum_probs=165.5

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCce-EEEEeCCCcEEEEECCCCeEEE
Q 010816          156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR-FVSASKDGDARIWDVSLRKCVI  234 (500)
Q Consensus       156 v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~s~s~dg~v~iwd~~~~~~~~  234 (500)
                      ++|++++++|++++.|++|.+||+.+++........+.....++.|+|     ++++ +++++.++.|++||+.+++.+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-----DG~~l~v~~~~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-----DNRTAYVLNNHYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-----TSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-----CCCEEEEEECCCCcEEEEeCccCeeee
Confidence            468899999999999999999999998765543334455567888876     4455 4677789999999999998877


Q ss_pred             EecCcc------ccEEEEEeCCCCe-EEEEe------------CCCeEEEEeCCCCeeEEEeecC--CceEEEEEecCcc
Q 010816          235 CLSGHT------LAVTCVKWGGDGV-IYTGS------------QDCTIKVWETTQGKLIRELKGH--GHWVNSLALSTEY  293 (500)
Q Consensus       235 ~~~~h~------~~v~~~~~~~~~~-l~t~~------------~dg~i~lwd~~~~~~~~~~~~~--~~~v~~~~~~~~~  293 (500)
                      .+....      ..+..++|++||. +++++            .++.+.+||..+++....+..+  ...+..+..++  
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  154 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD--  154 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT--
T ss_pred             eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC--
Confidence            654322      2344678898874 44443            4677788887766543322111  01111111111  


Q ss_pred             eeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-
Q 010816          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-  372 (500)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-  372 (500)
                                                         ...++..+  ..+.+|+...... ...+..+ .....+.++|++ 
T Consensus       155 -----------------------------------~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~  195 (346)
T d1jmxb_         155 -----------------------------------DGSLYVAG--PDIYKMDVKTGKY-TVALPLR-NWNRKGYSAPDVL  195 (346)
T ss_dssp             -----------------------------------TSCEEEES--SSEEEECTTTCCE-EEEECST-TCCCTTBCCCBCC
T ss_pred             -----------------------------------CCEEEEeC--CcceEEEccCCCE-EEEEecC-CCccceEEecccc
Confidence                                               11122222  3356666543221 1111111 112223334433 


Q ss_pred             -------------------------CEEEEEeCCCcEEEEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816          373 -------------------------QWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVV  426 (500)
Q Consensus       373 -------------------------~~lasgs~Dg~i~lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  426 (500)
                                               ..++++..+..+.+||..++..... +..|...+..+                  
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  257 (346)
T d1jmxb_         196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG------------------  257 (346)
T ss_dssp             CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEE------------------
T ss_pred             EEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEE------------------
Confidence                                     3334444555566666666554322 22333333322                  


Q ss_pred             eccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816          427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG  500 (500)
Q Consensus       427 ~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~  500 (500)
                               .+++++.+++.+.. +.|++||..+++.+..+. +...+.+++|||||++|++++.|+.|++|+.
T Consensus       258 ---------~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         258 ---------LRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             ---------EECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             ---------EEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence                     45788887777664 579999999998877664 3456899999999999999999999999984

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=2.1e-17  Score=154.50  Aligned_cols=294  Identities=12%  Similarity=0.037  Sum_probs=181.9

Q ss_pred             EEEcCCCCeEEEEe-----CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEE----------eCCCeEEEEe
Q 010816          114 VAFSPDGRQLASGS-----GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG----------SKAGELQCWD  178 (500)
Q Consensus       114 ~~~sp~~~~lat~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~----------~~d~~i~~wd  178 (500)
                      .+.+||+++++...     .+..|.+||..+++.+..+..+..+  .++|+|||++|+++          +.|+.|++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            45689999987764     4567999999999988877655544  69999999988764          3478999999


Q ss_pred             CCCCCcccccc--cCcc----cceEEEEeeeeecCCCCceEEEE--eCCCcEEEEECCCCeEEEEecCccccEEEEEeCC
Q 010816          179 PQTGKPSGNPL--SGHK----KWITGISWEPVHLNAPCRRFVSA--SKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG  250 (500)
Q Consensus       179 ~~~~~~~~~~~--~~~~----~~v~~~~~~~~~~~~~~~~~~s~--s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~  250 (500)
                      ..+++......  ..+.    .....+.|.|     ++++++.+  +.+..+.+||..+++.+..+..+.....  ....
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  157 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTP-----DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI--FPTA  157 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECT-----TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE--EEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEec-----CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE--eecC
Confidence            99887543211  0111    1112344443     44555544  4567899999999988877655432221  1112


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCeeEEEeecC------CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816          251 DGVIYTGSQDCTIKVWETTQGKLIRELKGH------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI  324 (500)
Q Consensus       251 ~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (500)
                      ....++.+.|+...++..............      ...+....                                    
T Consensus       158 ~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------  201 (355)
T d2bbkh_         158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA------------------------------------  201 (355)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCE------------------------------------
T ss_pred             CcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeecc------------------------------------
Confidence            233445566666665554433222211100      00010000                                    


Q ss_pred             cCCCCcEEEEeeCCCeEEEEcCCCCCCCc-eeeecc----------cCcEEEEEECCCCCEEEEEeCC----------Cc
Q 010816          325 KGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRMTGH----------QQLVNHVYFSPDGQWVASASFD----------KS  383 (500)
Q Consensus       325 ~~~~~~~~~s~s~d~~v~~wd~~~~~~~~-~~~~~h----------~~~v~~l~~sp~g~~lasgs~D----------g~  383 (500)
                      ....+..++.++.++.+++|+........ .....+          ......+++++++..++..+.+          +.
T Consensus       202 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  281 (355)
T d2bbkh_         202 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF  281 (355)
T ss_dssp             EETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred             ccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCe
Confidence            11124567888999999999976543211 111111          1122357899999888766544          36


Q ss_pred             EEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC--EEEEEECCCcEEEEECCCc
Q 010816          384 IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR--LLLSGSKDSTLKVWDIRTQ  461 (500)
Q Consensus       384 i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~s~s~d~~v~iwd~~~~  461 (500)
                      |++||..+++.+..+..+ ..+..                           ++|+|||+  ++++++.|+.|++||++++
T Consensus       282 v~v~d~~t~~~~~~~~~~-~~~~~---------------------------~a~spDG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         282 VVVLDAKTGERLAKFEMG-HEIDS---------------------------INVSQDEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             EEEEETTTCCEEEEEEEE-EEECE---------------------------EEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEeCCCCcEEEEecCC-CCEEE---------------------------EEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence            999999999887766532 12222                           36799997  4566778999999999999


Q ss_pred             cccccccCcccCEEEEEEc
Q 010816          462 KLKQDLPGHADEVFAVDWS  480 (500)
Q Consensus       462 ~~~~~~~~h~~~V~~l~~s  480 (500)
                      +.++++.++...-..+.+.
T Consensus       334 ~~~~~i~~~G~~p~~i~~~  352 (355)
T d2bbkh_         334 EELRSVNQLGHGPQVITTA  352 (355)
T ss_dssp             CEEEEECCCCSSCCEEECC
T ss_pred             CEEEEEeCcCCCccEEEeC
Confidence            9998887664433344333

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.75  E-value=2.9e-15  Score=140.77  Aligned_cols=298  Identities=10%  Similarity=-0.002  Sum_probs=183.2

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEE-----
Q 010816          147 TGHKNWVLCIAWSADGKHLVSG-----SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-----  216 (500)
Q Consensus       147 ~~h~~~v~~v~~s~~~~~l~s~-----~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~-----  216 (500)
                      ..+..++.+++++|||+.++..     +.++.|.+||..+++.... +..+..  ..+.|+|     ++++++++     
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-~~~~~~--~~~a~Sp-----DG~~l~va~~~~~   88 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-VNGGFL--PNPVAAH-----SGSEFALASTSFS   88 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-EeCCCC--ccEEEcC-----CCCEEEEEeecCC
Confidence            3578889999999999998764     3346799999999987653 334333  3567766     55666655     


Q ss_pred             -----eCCCcEEEEECCCCeEEEEecCccccEEE-------EEeCCCCe---EEEEeCCCeEEEEeCCCCeeEEEeecCC
Q 010816          217 -----SKDGDARIWDVSLRKCVICLSGHTLAVTC-------VKWGGDGV---IYTGSQDCTIKVWETTQGKLIRELKGHG  281 (500)
Q Consensus       217 -----s~dg~v~iwd~~~~~~~~~~~~h~~~v~~-------~~~~~~~~---l~t~~~dg~i~lwd~~~~~~~~~~~~~~  281 (500)
                           +.++.|++||..+++.+..+..+......       +.|++++.   +.....++.+.+|+...++.......  
T Consensus        89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--  166 (373)
T d2madh_          89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS--  166 (373)
T ss_pred             cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEecc--
Confidence                 35678999999999988877766555433       34455442   22233456677777666554433221  


Q ss_pred             ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee-----
Q 010816          282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-----  356 (500)
Q Consensus       282 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~-----  356 (500)
                        ..++.++++                                   ....+++.+.|+.+.+|+...........     
T Consensus       167 --~~~~~~s~~-----------------------------------g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~  209 (373)
T d2madh_         167 --PTCYHIHPG-----------------------------------APSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT  209 (373)
T ss_pred             --ceeEEEecC-----------------------------------CCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc
Confidence              223333332                                   12356888999999999976443222111     


Q ss_pred             ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEE--EEeCCcccEEEEEeeeeeeecCCCCceeeeecccccee
Q 010816          357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL  434 (500)
Q Consensus       357 ~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (500)
                      .++......+.+++++.+ +..+.++.+++|+..++....  .+..+........+..       .......-.......
T Consensus       210 ~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~  281 (373)
T d2madh_         210 AAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP-------GGWQQVAYLKSSDGI  281 (373)
T ss_pred             cCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeecc-------CcceeeEEecCCCeE
Confidence            112223445566666654 455688999999998876432  2333333322221110       000000000000111


Q ss_pred             eEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCE--EEEEeCCCcEEEecC
Q 010816          435 YSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLWMG  500 (500)
Q Consensus       435 ~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~--l~s~~~D~~v~iW~~  500 (500)
                      +.+.+++..+++...++.+.+||..+++.+..+. +...+.+++|+|||++  +++++.|++|++|+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             EEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            1223444555667778899999999998887765 5567899999999985  468899999999983

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.7e-15  Score=139.74  Aligned_cols=277  Identities=11%  Similarity=0.099  Sum_probs=165.1

Q ss_pred             EEEEeCCCcEEEEeCCCCcee--EEecCCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCCccccc--ccCcccceE
Q 010816          123 LASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGKPSGNP--LSGHKKWIT  197 (500)
Q Consensus       123 lat~~~d~~i~iwd~~~~~~~--~~~~~h~~~v~~v~~s~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~--~~~~~~~v~  197 (500)
                      +++++.|++|+||++.+...+  .....|.+.+..|+|+|||++|+++ ..|+.|++|++.........  ...+.....
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT   86 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence            467789999999999765433  3334688899999999999998554 45899999998765432211  111223344


Q ss_pred             EEEeeeeecCCCCceEEEEe-CCCcEEEEECCCCeEE--EEecCccccEEEEEeCCCCe-EEEE-eCCCeEEEEeCCCCe
Q 010816          198 GISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV-IYTG-SQDCTIKVWETTQGK  272 (500)
Q Consensus       198 ~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~-l~t~-~~dg~i~lwd~~~~~  272 (500)
                      .+.|+|     +++++++++ .++.+++|+.......  .....+...+.++.+++++. ++.+ ..+..|.+|+.....
T Consensus        87 ~l~~sp-----Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_          87 HISTDH-----QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             EEEECT-----TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             EEEEcC-----CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            566665     556677666 4678999987665433  23345666677888998874 4444 456679999976653


Q ss_pred             eEEEe------ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816          273 LIREL------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP  346 (500)
Q Consensus       273 ~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~  346 (500)
                      .....      .........++++++.                                   .....+....+...+|+.
T Consensus       162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~-----------------------------------~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         162 HLVAQDPAEVTTVEGAGPRHMVFHPNE-----------------------------------QYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTS-----------------------------------SEEEEEETTTTEEEEEES
T ss_pred             cceeeeceeeeeecCCCccEEEEeccc-----------------------------------eeEEeeccccCceEEEee
Confidence            32211      1122223344444331                                   112333444555666654


Q ss_pred             CCCCCCcee---e------ecccCcEEEEEECCCCCEEEE-EeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816          347 AVSKQPKTR---M------TGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF  416 (500)
Q Consensus       347 ~~~~~~~~~---~------~~h~~~v~~l~~sp~g~~las-gs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  416 (500)
                      .........   .      .........++++++++++.. +..++.+.+|++..........++..             
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  273 (333)
T d1ri6a_         207 KDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-------------  273 (333)
T ss_dssp             SCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-------------
T ss_pred             cccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeC-------------
Confidence            322211110   0      112345677899999986654 45678899998765433222211100             


Q ss_pred             cCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEE--CCCccc
Q 010816          417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWD--IRTQKL  463 (500)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd--~~~~~~  463 (500)
                                 .......++|+|||++|++++ .++.|++|+  .+++++
T Consensus       274 -----------~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         274 -----------TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             -----------CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             -----------CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence                       001112347899999888775 468899994  556554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=8.8e-16  Score=143.27  Aligned_cols=279  Identities=11%  Similarity=0.050  Sum_probs=173.8

Q ss_pred             EEcCCCCEEEEEe-----CCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEE----------EeCCCc
Q 010816          157 AWSADGKHLVSGS-----KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS----------ASKDGD  221 (500)
Q Consensus       157 ~~s~~~~~l~s~~-----~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s----------~s~dg~  221 (500)
                      +.+||++.++...     .+..|.+||..+++.... +..+  ....++|+|     ++++++.          ++.|+.
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-~~~g--~~~~~a~Sp-----Dg~~l~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-IDGG--FLPNPVVAD-----DGSFIAHASTVFSRIARGERTDY   79 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-EEEC--SSCEEEECT-----TSSCEEEEEEEEEETTEEEEEEE
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-EECC--CCCceEEcC-----CCCEEEEEeCCCccccccCCCCE
Confidence            4579999887653     456899999999876553 2222  334677776     4455554          345789


Q ss_pred             EEEEECCCCeEEEEecCccc-------cEEEEEeCCCCe-EEEE--eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecC
Q 010816          222 ARIWDVSLRKCVICLSGHTL-------AVTCVKWGGDGV-IYTG--SQDCTIKVWETTQGKLIRELKGHGHWVNSLALST  291 (500)
Q Consensus       222 v~iwd~~~~~~~~~~~~h~~-------~v~~~~~~~~~~-l~t~--~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~  291 (500)
                      |++||..+++.+..+..+..       ....+.|++++. ++.+  +.+..+.+||..+++.+..+..+........ . 
T Consensus        80 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  157 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT-A-  157 (355)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE-E-
T ss_pred             EEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeec-C-
Confidence            99999999988776543221       123467888873 4433  4567899999999988877765433221110 0 


Q ss_pred             cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce-----eeecccCcEEEE
Q 010816          292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT-----RMTGHQQLVNHV  366 (500)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~-----~~~~h~~~v~~l  366 (500)
                                                           ....+..+.|+...++..........     ....+...+...
T Consensus       158 -------------------------------------~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (355)
T d2bbkh_         158 -------------------------------------PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHP  200 (355)
T ss_dssp             -------------------------------------TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCC
T ss_pred             -------------------------------------CcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeec
Confidence                                                 11233344444444443222111100     012233445566


Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCceEE--EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEE
Q 010816          367 YFSPDGQWVASASFDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL  444 (500)
Q Consensus       367 ~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  444 (500)
                      .+++++..++.++.++.+++|+...++...  ...++........+                 .......+++++++..+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~~~~~~~~d~~~~  263 (355)
T d2bbkh_         201 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW-----------------RPGGWQQVAYHRALDRI  263 (355)
T ss_dssp             EEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE-----------------EECSSSCEEEETTTTEE
T ss_pred             cccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeee-----------------eccceEEEEEeCCCCeE
Confidence            788888899999999999999998875422  22222111000000                 01112234678999988


Q ss_pred             EEEECC----------CcEEEEECCCccccccccCcccCEEEEEEcCCCC--EEEEEeCCCcEEEecC
Q 010816          445 LSGSKD----------STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE--KVASGGKDRVLKLWMG  500 (500)
Q Consensus       445 ~s~s~d----------~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~--~l~s~~~D~~v~iW~~  500 (500)
                      +..+.+          ..|.+||..+++.+..+.. ...+.+++|+|||+  .+++++.|++|++|+.
T Consensus       264 ~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         264 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             EEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence            776544          3699999999988877753 35688999999998  3567788999999973

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=7.7e-14  Score=128.40  Aligned_cols=250  Identities=13%  Similarity=0.195  Sum_probs=152.7

Q ss_pred             CCcccEEEEEEcCCCCeEEEEe-CCCcEEEEeCCCCceeEEe---cCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCC
Q 010816          106 GHTEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKC---TGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQ  180 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~~-~d~~i~iwd~~~~~~~~~~---~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~~wd~~  180 (500)
                      .|.+.|.+|+|+|||++|++++ .|+.|++|++.........   ..+...+..++|+|||++|++++. ++.+.+|+..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            5788899999999999986555 5899999999765433322   234455778999999999998875 6789999876


Q ss_pred             CCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEe-CCCcEEEEECCCCeEEEE------ecCccccEEEEEeCCCC
Q 010816          181 TGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVIC------LSGHTLAVTCVKWGGDG  252 (500)
Q Consensus       181 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~~~~------~~~h~~~v~~~~~~~~~  252 (500)
                      ...... .....+...+.++.+.|     +.+.++.++ .+..+.+|+.........      ..........++|++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~v~~s~-----d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~  188 (333)
T d1ri6a_         114 DGLPVGVVDVVEGLDGCHSANISP-----DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  188 (333)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECT-----TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             cccceecccccCCCccceEEEeee-----cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc
Confidence            553221 11223334455555544     444555554 556789999865432211      11233445678888876


Q ss_pred             e--EEEEeCCCeEEEEeCCCCee----EEEeec------CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHh
Q 010816          253 V--IYTGSQDCTIKVWETTQGKL----IRELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER  320 (500)
Q Consensus       253 ~--l~t~~~dg~i~lwd~~~~~~----~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (500)
                      .  +.+....+...+|+......    ...+..      .......++++++                            
T Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d----------------------------  240 (333)
T d1ri6a_         189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD----------------------------  240 (333)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT----------------------------
T ss_pred             eeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecc----------------------------
Confidence            4  33445667778887543211    111110      0111122222221                            


Q ss_pred             hhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee--eecccCcEEEEEECCCCCEEEEEe-CCCcEEEE--eCCCCceE
Q 010816          321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLW--NGTTGKFV  395 (500)
Q Consensus       321 ~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~--~~~h~~~v~~l~~sp~g~~lasgs-~Dg~i~lw--d~~~~~~~  395 (500)
                             ....++.+..++.+.+|+..........  .......+.+++|+|||++|++++ .++.|++|  |.++|++.
T Consensus       241 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         241 -------GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             -------SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             -------cCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence                   1224566677889999987544333222  223345577899999999877664 56899998  56677653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=1.8e-13  Score=128.12  Aligned_cols=299  Identities=8%  Similarity=-0.054  Sum_probs=169.2

Q ss_pred             CCcccEEEEEEcCCCCeEE---EEeCCC--cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------C
Q 010816          106 GHTEAVLSVAFSPDGRQLA---SGSGDT--TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------K  170 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~la---t~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------~  170 (500)
                      .+.++...++..++++...   ++..++  .+.+||..+++.+....++..+  .+.|+|||+.|+.++          .
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~   94 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR   94 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence            3455556667788888532   233444  4667799999888777766654  588999999888754          4


Q ss_pred             CCeEEEEeCCCCCcccccccCcc-------cceEEEEeeeeecCCCCceEEEEe-CCCcEEEEECCCCeEEEEecCcccc
Q 010816          171 AGELQCWDPQTGKPSGNPLSGHK-------KWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLA  242 (500)
Q Consensus       171 d~~i~~wd~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~~~~~~~h~~~  242 (500)
                      |+.|++||..+++..... ..+.       .....+.|+|     ++++++.+. .++.+.+||+.+++.+..+..+...
T Consensus        95 d~~v~v~D~~t~~~~~~i-~~p~~~~~~~g~~p~~~a~Sp-----DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~  168 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADI-ELPDAPRFSVGPRVHIIGNCA-----SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF  168 (368)
T ss_dssp             EEEEEEECTTTCCEEEEE-EETTSCSCCBSCCTTSEEECT-----TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC
T ss_pred             CCeEEEEECCCCcEeeee-cCCccceecccCCccceEECC-----CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc
Confidence            788999999988754321 1111       1112355554     666776665 6799999999999988776554332


Q ss_pred             EEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEee------cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816          243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA  316 (500)
Q Consensus       243 v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (500)
                      .  +...+...++..+.||++.++++..+.......      .+...+......++.....                   
T Consensus       169 ~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------------------  227 (368)
T d1mdah_         169 H--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-------------------  227 (368)
T ss_dssp             C--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE-------------------
T ss_pred             e--EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE-------------------
Confidence            1  111223466777889999888876543222111      0111111111111100000                   


Q ss_pred             HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee-ecccCcEEEEEECCCCCEEEEEeCC---------CcEEE
Q 010816          317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFD---------KSIKL  386 (500)
Q Consensus       317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~lasgs~D---------g~i~l  386 (500)
                               .......+..-.++.+.+++........... .........++++|++..++....+         ..|++
T Consensus       228 ---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v  298 (368)
T d1mdah_         228 ---------AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS  298 (368)
T ss_dssp             ---------CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred             ---------ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEE
Confidence                     0000001111122222233221111100000 0001112347889988876654332         35999


Q ss_pred             EeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC--EEEEEECCCcEEEEECCCcccc
Q 010816          387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR--LLLSGSKDSTLKVWDIRTQKLK  464 (500)
Q Consensus       387 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~s~s~d~~v~iwd~~~~~~~  464 (500)
                      ||..+++.+..+... ..+..                           ++|+|||+  ++++++.|+.|++||..+++.+
T Consensus       299 ~D~~t~~~~~~~~~~-~~~~~---------------------------~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         299 VTASVGQTSGPISNG-HDSDA---------------------------IIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             EESSSCCEEECCEEE-EEECE---------------------------EEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             EECCCCcEeEEecCC-CceeE---------------------------EEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            999999877655421 22222                           36899997  3456778999999999999998


Q ss_pred             ccccCc
Q 010816          465 QDLPGH  470 (500)
Q Consensus       465 ~~~~~h  470 (500)
                      +.++..
T Consensus       351 ~~i~~g  356 (368)
T d1mdah_         351 SSVELD  356 (368)
T ss_dssp             EECCCC
T ss_pred             EEEECC
Confidence            887654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.52  E-value=4.1e-13  Score=130.15  Aligned_cols=145  Identities=10%  Similarity=0.094  Sum_probs=105.2

Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec-----CCCCCEEEEEEcCCCCEEEEEeC---------CCeEEEEe
Q 010816          113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-----GHKNWVLCIAWSADGKHLVSGSK---------AGELQCWD  178 (500)
Q Consensus       113 ~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~v~~s~~~~~l~s~~~---------d~~i~~wd  178 (500)
                      .+.|.++++++..  .|+.+.+||+.+++....+.     .|...|.++.|||||++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4678899987764  57889999999987755443     45678999999999999998753         56789999


Q ss_pred             CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc------------------
Q 010816          179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT------------------  240 (500)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~------------------  240 (500)
                      +.+++..  .+..+...+..+.|+|     ++..++. ..++.+.+|+...++.......+.                  
T Consensus        99 ~~~~~~~--~l~~~~~~~~~~~~SP-----DG~~ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~  170 (470)
T d2bgra1          99 LNKRQLI--TEERIPNNTQWVTWSP-----VGHKLAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (470)
T ss_dssp             TTTTEEC--CSSCCCTTEEEEEECS-----STTCEEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             CCCCccc--ccccCCcccccccccc-----CcceeeE-eecccceEEECCCCceeeeeeccCCCcccccccceeeeeeec
Confidence            9988643  4677888889999987     5566776 457789999998887655433221                  


Q ss_pred             ccEEEEEeCCCCe-EEEEeCC-CeEEEEe
Q 010816          241 LAVTCVKWGGDGV-IYTGSQD-CTIKVWE  267 (500)
Q Consensus       241 ~~v~~~~~~~~~~-l~t~~~d-g~i~lwd  267 (500)
                      .....+.|+|||. |+....| ..+..|+
T Consensus       171 ~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         171 SAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             CCccccEECCCCCccceeEecCCcCceEE
Confidence            1234577999984 5555544 3355444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.51  E-value=1.8e-12  Score=125.59  Aligned_cols=118  Identities=14%  Similarity=0.193  Sum_probs=85.9

Q ss_pred             ccccCCcccEEEEEEcCCCCeEEEEeC---------CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 010816          102 ATIAGHTEAVLSVAFSPDGRQLASGSG---------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG  172 (500)
Q Consensus       102 ~~~~gh~~~V~~~~~sp~~~~lat~~~---------d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~  172 (500)
                      .++.+|...|.+++|||||++||.++.         ++.+.|||+++++. ..+..|...+..+.|||||++||.. .++
T Consensus        55 ~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~  132 (470)
T d2bgra1          55 STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNN  132 (470)
T ss_dssp             TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETT
T ss_pred             hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecc
Confidence            356778889999999999999998753         56789999998764 4577889999999999999999985 578


Q ss_pred             eEEEEeCCCCCcccccccCcc-----------------cceEEEEeeeeecCCCCceEEEEeCCCc-EEEEE
Q 010816          173 ELQCWDPQTGKPSGNPLSGHK-----------------KWITGISWEPVHLNAPCRRFVSASKDGD-ARIWD  226 (500)
Q Consensus       173 ~i~~wd~~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~~~~~~~~s~s~dg~-v~iwd  226 (500)
                      .+.+|+..+++.......+..                 ....++.|+|     ++++++....|.+ ++.|+
T Consensus       133 ~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-----DGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-----NGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-----TSSEEEEEEEECTTCCEEE
T ss_pred             cceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-----CCCccceeEecCCcCceEE
Confidence            999999988765432222211                 2234456766     5567777655433 44443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.47  E-value=1.1e-12  Score=122.83  Aligned_cols=250  Identities=10%  Similarity=0.018  Sum_probs=150.4

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCceeEEecCCCC-------CEEEEEEcCCCCEEE
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGHKN-------WVLCIAWSADGKHLV  166 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~----------~d~~i~iwd~~~~~~~~~~~~h~~-------~v~~v~~s~~~~~l~  166 (500)
                      +.++..+  .++|+|||+.|++++          .|++|++||..+++++..+..+..       ....++|+|||++|+
T Consensus        62 ~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~  139 (368)
T d1mdah_          62 SLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLL  139 (368)
T ss_dssp             EEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEE
T ss_pred             EeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEE
Confidence            3344444  489999999998764          367899999999988776654322       224689999999998


Q ss_pred             EEe-CCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE------ecCc
Q 010816          167 SGS-KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC------LSGH  239 (500)
Q Consensus       167 s~~-~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~------~~~h  239 (500)
                      .+. .++.+.+||+.+++..... ..+....    ..|.    ....++..+.||.+..+++........      +..+
T Consensus       140 va~~~~~~v~~~d~~~~~~~~~~-~~~~~~~----~~~~----~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~  210 (368)
T d1mdah_         140 FFLFGSSAAAGLSVPGASDDQLT-KSASCFH----IHPG----AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ  210 (368)
T ss_dssp             EEECSSSCEEEEEETTTEEEEEE-ECSSCCC----CEEE----ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred             EEeCCCCeEEEEECCCCcEeEEe-eccCcce----EccC----CCceEEEEcCCCCEEEEEecCCceeeeeeeccccccc
Confidence            776 5799999999987654321 1111111    1111    124677788999999998765432211      1233


Q ss_pred             cccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEee--cCCce----------EEEEEecCcceeeeccccCCCCCC
Q 010816          240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK--GHGHW----------VNSLALSTEYALRTGAFDHTGKQY  307 (500)
Q Consensus       240 ~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~--~~~~~----------v~~~~~~~~~~~~~~~~~~~~~~~  307 (500)
                      ...+..+.+.+++..+. ..++.+.+++...+.......  .....          ...++++++               
T Consensus       211 ~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~---------------  274 (368)
T d1mdah_         211 NCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN---------------  274 (368)
T ss_dssp             CBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT---------------
T ss_pred             ccceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCC---------------
Confidence            34444566666665443 345667777766554332111  00000          001111111               


Q ss_pred             CCHHHHHHHHHHhhhhhcCCCCcEE-EEee--------CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC--EEE
Q 010816          308 SSPEEMKKAALERYNKIKGNAPERL-VSGS--------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ--WVA  376 (500)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s--------~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~--~la  376 (500)
                                           ...+ +...        ....+.+||....+... .+ .+...+.+++|+|||+  +++
T Consensus       275 ---------------------~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~-~~-~~~~~~~~~a~spDG~~~ly~  331 (368)
T d1mdah_         275 ---------------------TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG-PI-SNGHDSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             ---------------------TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE-CC-EEEEEECEEEECCSSSCEEEE
T ss_pred             ---------------------CCEEEEEecCCCceeecCCceEEEEECCCCcEeE-Ee-cCCCceeEEEECCCCCEEEEE
Confidence                                 1122 2111        12358889876554322 22 2334688899999996  356


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEeCCcc
Q 010816          377 SASFDKSIKLWNGTTGKFVAVFRGHVG  403 (500)
Q Consensus       377 sgs~Dg~i~lwd~~~~~~~~~~~~h~~  403 (500)
                      ++..|+.|++||..+|+.+..++....
T Consensus       332 s~~~~~~v~v~D~~tgk~~~~i~~g~~  358 (368)
T d1mdah_         332 NSAGTEVLDIYDAASDQDQSSVELDKG  358 (368)
T ss_dssp             EETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred             EeCCCCeEEEEECCCCCEEEEEECCCC
Confidence            777899999999999999887765433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.39  E-value=7.4e-14  Score=130.37  Aligned_cols=310  Identities=14%  Similarity=0.079  Sum_probs=169.0

Q ss_pred             EEEEeCCCcEEEEeCCCCceeEEecC------------------------------CCCCEEEEEEcCCCCEEEEE-eCC
Q 010816          123 LASGSGDTTVRLWDLNTQTPMFKCTG------------------------------HKNWVLCIAWSADGKHLVSG-SKA  171 (500)
Q Consensus       123 lat~~~d~~i~iwd~~~~~~~~~~~~------------------------------h~~~v~~v~~s~~~~~l~s~-~~d  171 (500)
                      ++||+.+|.|+||++.+.+.+..+..                              |.-......++|||++|+.. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56777899999999987766554321                              22334555567899988655 467


Q ss_pred             CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE------------------EEEECCCCeEE
Q 010816          172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA------------------RIWDVSLRKCV  233 (500)
Q Consensus       172 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v------------------~iwd~~~~~~~  233 (500)
                      ..|.++|+.+++........+.....++.+.|...    ..++++..+..+                  ..+|..+.+..
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~----t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPK----TNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSB----CCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCC----EEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence            89999999998765432223445567777766321    123433333333                  44666666554


Q ss_pred             EEecCccccEEEEEeCCCCe-EEEEeCC-CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHH
Q 010816          234 ICLSGHTLAVTCVKWGGDGV-IYTGSQD-CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE  311 (500)
Q Consensus       234 ~~~~~h~~~v~~~~~~~~~~-l~t~~~d-g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (500)
                      ..+... .....+.++++|. +++.+.+ ..+..++..+.+....       +....+                    +.
T Consensus       170 ~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~-------i~v~n~--------------------p~  221 (441)
T d1qnia2         170 WQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDW-------VVVFNV--------------------ER  221 (441)
T ss_dssp             EEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCE-------EEEEEH--------------------HH
T ss_pred             EEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEE-------EEeCCc--------------------cc
Confidence            443321 2345567788774 4444433 2333233222222111       100000                    00


Q ss_pred             HHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE-EEEeCCCcEEEEeCC
Q 010816          312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGT  390 (500)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l-asgs~Dg~i~lwd~~  390 (500)
                      ..   ...+       .+. .+.-+.++.+.+++.... .....+... .....+.++|||+++ +++..|++|.+||++
T Consensus       222 ~~---~~~~-------dGk-~~~v~~~~v~vvd~~~~~-~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         222 IA---AAVK-------AGN-FKTIGDSKVPVVDGRGES-EFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             HH---HHHH-------TTC-CBCCTTCCCCEEECSSSC-SSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             eE---EEec-------CCC-EEEeCCCCcEEEEcccCC-ceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence            00   0000       011 112233556666654322 222333332 335678999999976 567789999999986


Q ss_pred             CCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc---------
Q 010816          391 TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ---------  461 (500)
Q Consensus       391 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~---------  461 (500)
                      +....  +.++.....++..+.              ...-.....+|.++|..+.+.+.|..|..|++...         
T Consensus       289 k~~~~--~~~~~~~~~~~~~~~--------------~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~  352 (441)
T d1qnia2         289 KLDDL--FEDKIELRDTIVAEP--------------ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRV  352 (441)
T ss_dssp             GHHHH--TTTSSCGGGGEEECC--------------BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCC
T ss_pred             hhhhH--hhccCCcceEEEeec--------------ccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCC
Confidence            53211  111111111111100              00001112368899988889999999999997421         


Q ss_pred             -cccccc-----cCcccCEEEEEEcCCCCEEEEE---eCCC
Q 010816          462 -KLKQDL-----PGHADEVFAVDWSPDGEKVASG---GKDR  493 (500)
Q Consensus       462 -~~~~~~-----~~h~~~V~~l~~s~dg~~l~s~---~~D~  493 (500)
                       .....+     .||...+.+..++|||+||+++   |.|+
T Consensus       353 ~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         353 NYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             CCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred             ceeEeccccccCCCCCccccccccCCCCcEEEecCcccccc
Confidence             122222     5787777778899999999999   5554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.06  E-value=1.1e-08  Score=95.03  Aligned_cols=246  Identities=11%  Similarity=0.059  Sum_probs=137.9

Q ss_pred             eEEEEeCCCcEEEEECCCCeEEEEecC------------------------------ccccEEEEEeCCCCe-E-EEEeC
Q 010816          212 RFVSASKDGDARIWDVSLRKCVICLSG------------------------------HTLAVTCVKWGGDGV-I-YTGSQ  259 (500)
Q Consensus       212 ~~~s~s~dg~v~iwd~~~~~~~~~~~~------------------------------h~~~v~~~~~~~~~~-l-~t~~~  259 (500)
                      .|++++.+|.|++||+.+++.+..+.-                              |..........+||. + ++...
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            478899999999999998887766421                              222334444456663 4 44567


Q ss_pred             CCeEEEEeCCCCeeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816          260 DCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD  338 (500)
Q Consensus       260 dg~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d  338 (500)
                      +++|.++|+.+.+..+.+. .+......++++++...                                  .+++..+.+
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t----------------------------------~YV~~~~~~  138 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT----------------------------------NYVFCNAEF  138 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC----------------------------------CEEEEEECS
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCE----------------------------------EEEEeccCC
Confidence            8899999999998877664 34667777888765321                                  011111111


Q ss_pred             -----------------CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC-cEEEEeCCCCceEEEEeC
Q 010816          339 -----------------FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRG  400 (500)
Q Consensus       339 -----------------~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg-~i~lwd~~~~~~~~~~~~  400 (500)
                                       ..+..+|............+  .....++|+|+|+++++.+.+. .+..++..+.+....+..
T Consensus       139 ~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~--~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v  216 (441)
T d1qnia2         139 VIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD--GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVV  216 (441)
T ss_dssp             CEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEE
T ss_pred             cccccCcccccccccccceEEeecCccceeeEEEecC--CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEe
Confidence                             12334554432221111211  2356789999999999887653 222223222221110000


Q ss_pred             ------------------CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE-EEECCCcEEEEECCCc
Q 010816          401 ------------------HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL-SGSKDSTLKVWDIRTQ  461 (500)
Q Consensus       401 ------------------h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~s~d~~v~iwd~~~~  461 (500)
                                        ....+..+..      .........+........+.++|||++++ ++..|++|.+||+++.
T Consensus       217 ~n~p~~~~~~~dGk~~~v~~~~v~vvd~------~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         217 FNVERIAAAVKAGNFKTIGDSKVPVVDG------RGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             EEHHHHHHHHHTTCCBCCTTCCCCEEEC------SSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred             CCccceEEEecCCCEEEeCCCCcEEEEc------ccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence                              0000000100      00001111122222334457899999875 4668999999998763


Q ss_pred             ccc--------ccccCcc---cCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816          462 KLK--------QDLPGHA---DEVFAVDWSPDGEKVASGGKDRVLKLWM  499 (500)
Q Consensus       462 ~~~--------~~~~~h~---~~V~~l~~s~dg~~l~s~~~D~~v~iW~  499 (500)
                      +..        ..+.++.   -.....+|+++|..+.|...|++|..|+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~  339 (441)
T d1qnia2         291 DDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN  339 (441)
T ss_dssp             HHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             hhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEec
Confidence            211        1111111   1235568999999999999999999996

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.93  E-value=2.7e-07  Score=82.66  Aligned_cols=229  Identities=12%  Similarity=0.045  Sum_probs=138.5

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  189 (500)
                      .+..++++|||+++++...+++|..|+......  .+......+.+++|++||+++++...++.+..|+..........+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            467899999999999999999998888665433  233456779999999999998888888888888765432211111


Q ss_pred             --cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC----------ccccEEEEEeCCCCeEEEE
Q 010816          190 --SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG----------HTLAVTCVKWGGDGVIYTG  257 (500)
Q Consensus       190 --~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~----------h~~~v~~~~~~~~~~l~t~  257 (500)
                        .........+.+.+     ++..+++-+.++.+..+|...+........          .......+.+..+..+++.
T Consensus       107 ~~~~~~~~~n~i~~~~-----~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~  181 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLS-----DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN  181 (302)
T ss_dssp             EECTTCSCEEEEEESS-----SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE
T ss_pred             cccCCccccceeEEcc-----CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeec
Confidence              11223345555543     445677777888888888877654332211          1123445666666566777


Q ss_pred             eCCCeEEEEeCCCCeeEEEee--cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816          258 SQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG  335 (500)
Q Consensus       258 ~~dg~i~lwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  335 (500)
                      +..+.|..++...........  ........+++.+                                    .+...++.
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~------------------------------------dG~l~va~  225 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV------------------------------------EGNLYGAT  225 (302)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT------------------------------------TCCEEEEC
T ss_pred             CCCCeEEeccccccccccccccccCCCCCcceEECC------------------------------------CCCEEEEE
Confidence            788888888765433221100  0011111222222                                    23456666


Q ss_pred             eCCCeEEEEcCCCCCCCceeeecccCcEEEEEE---CCCCCEEEEEeCC
Q 010816          336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF---SPDGQWVASASFD  381 (500)
Q Consensus       336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~---sp~g~~lasgs~D  381 (500)
                      ..++.|..+++.............-...++++|   ++|++.|..++..
T Consensus       226 ~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         226 HIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             BTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             cCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            678888888764321111111223345889999   6788877766554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=4.9e-06  Score=72.57  Aligned_cols=120  Identities=17%  Similarity=0.167  Sum_probs=70.7

Q ss_pred             EEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC---cEEEEeCCCCceEEEEeCCcccEEEE
Q 010816          332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQI  408 (500)
Q Consensus       332 ~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg---~i~lwd~~~~~~~~~~~~h~~~v~~~  408 (500)
                      ++....++...+|...........+..+........|+|+++.++..+.++   .+.+.+...+... .. .+.+..   
T Consensus       142 ~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~-~~~~~~---  216 (269)
T d2hqsa1         142 AFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL-SSTFLD---  216 (269)
T ss_dssp             EEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC-CCSSSC---
T ss_pred             eecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccce-Ee-ecCccc---
Confidence            333444444333332222223334445556677889999999988776654   4455555544331 11 111111   


Q ss_pred             EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC---CCcEEEEECCCccccccccCcccCEEEEEEcC
Q 010816          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK---DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP  481 (500)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~  481 (500)
                                              ....|||||+.|+-.+.   ...++++++..+.. ..+....+.+...+|||
T Consensus       217 ------------------------~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         217 ------------------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             ------------------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             ------------------------cceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence                                    11268999999886554   34688999987655 44555667788899998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.68  E-value=2.1e-05  Score=70.23  Aligned_cols=72  Identities=13%  Similarity=0.057  Sum_probs=50.8

Q ss_pred             EEEEEEcCCCCeEEEEeC-------CCcEEEEeCCCCceeEEecC----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816          111 VLSVAFSPDGRQLASGSG-------DTTVRLWDLNTQTPMFKCTG----HKNWVLCIAWSADGKHLVSGSKAGELQCWDP  179 (500)
Q Consensus       111 V~~~~~sp~~~~lat~~~-------d~~i~iwd~~~~~~~~~~~~----h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~  179 (500)
                      .-.++|+|+|++.++...       ++.|..||..++........    ....-..+.|.++++.|+++...+.|...+.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            345789999998776432       46788889887654332221    1223567999999998888887778888887


Q ss_pred             CCC
Q 010816          180 QTG  182 (500)
Q Consensus       180 ~~~  182 (500)
                      ..+
T Consensus       100 ~g~  102 (314)
T d1pjxa_         100 DGT  102 (314)
T ss_dssp             TSC
T ss_pred             CCc
Confidence            654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=9.6e-06  Score=70.37  Aligned_cols=235  Identities=9%  Similarity=-0.021  Sum_probs=125.2

Q ss_pred             EEEEEEcCCCCeEEEE-eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc
Q 010816          111 VLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (500)
Q Consensus       111 V~~~~~sp~~~~lat~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  189 (500)
                      -..|+++++|+..++. +..+.+..++..+........+-......+++++++.+.++....+.+++++..++.... ..
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~-~~   94 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL-PF   94 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC-CC
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee-ee
Confidence            3689999999966654 455677777665443222111112335678999999888777777777777655443221 11


Q ss_pred             cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEE-EEeCCCeEEEEeC
Q 010816          190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWET  268 (500)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~-t~~~dg~i~lwd~  268 (500)
                      .+ -....++++.+     ++..+++-..+..+..++...................+++.+++.++ +...++.|..+|.
T Consensus        95 ~~-~~~p~~iavd~-----~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~  168 (260)
T d1rwia_          95 DG-LNYPEGLAVDT-----QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA  168 (260)
T ss_dssp             CS-CCSEEEEEECT-----TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             ee-eeecccccccc-----cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccc
Confidence            11 12234454433     22344444444445555443322111111111233567777776554 4566678888987


Q ss_pred             CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCC
Q 010816          269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV  348 (500)
Q Consensus       269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~  348 (500)
                      ..................+++.++                                    +..+++....+.|..++...
T Consensus       169 ~~~~~~~~~~~~~~~p~gi~~d~~------------------------------------g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         169 ESNNQVVLPFTDITAPWGIAVDEA------------------------------------GTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECTT------------------------------------CCEEEEETTTTEEEEECTTC
T ss_pred             ccceeeeeeccccCCCccceeeee------------------------------------eeeeeeecCCCEEEEEeCCC
Confidence            654332211122222334444332                                    23456666677787776543


Q ss_pred             CCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816          349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG  389 (500)
Q Consensus       349 ~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~  389 (500)
                      ... .......-.....|+++++|.++++-..+++|+.++.
T Consensus       213 ~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         213 TTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             SCC-EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CeE-EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            221 1111122345789999999998888777777776654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.64  E-value=1.4e-05  Score=73.06  Aligned_cols=131  Identities=11%  Similarity=0.107  Sum_probs=71.7

Q ss_pred             CcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC
Q 010816          361 QLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA  439 (500)
Q Consensus       361 ~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  439 (500)
                      ...+.++|+|+|+++.+. ..+++|.+|+...+........     ..+...   ....+...............+.++|
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~sp  264 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH-----HSFPLI---PPGIPDRDPETGKGLYRADVCALTF  264 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-----EEEESS---CTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEe-----eeeccc---cccccccccccccccCCccceEECC
Confidence            346789999999987554 4688999999876543221110     001000   0000000000000011123457899


Q ss_pred             CCCEEEEEEC-C-----CcEEEEECCCccccc------cccCcccCEEEEEEcC-CCCEEEEE-eCCCcEEEec
Q 010816          440 DSRLLLSGSK-D-----STLKVWDIRTQKLKQ------DLPGHADEVFAVDWSP-DGEKVASG-GKDRVLKLWM  499 (500)
Q Consensus       440 ~~~~l~s~s~-d-----~~v~iwd~~~~~~~~------~~~~h~~~V~~l~~s~-dg~~l~s~-~~D~~v~iW~  499 (500)
                      +|++|+++.. +     ..|-.|++.....+.      ........-.+++++| +|++|+.+ ..++.|.+|+
T Consensus       265 dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         265 SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             CCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence            9999988753 2     236667665422111      1111223446788998 89988766 5678999985

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.64  E-value=2.5e-05  Score=68.48  Aligned_cols=139  Identities=16%  Similarity=0.252  Sum_probs=87.8

Q ss_pred             EEEEeeCCCeEEEEcCCCCCCCcee--eecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816          331 RLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (500)
Q Consensus       331 ~~~s~s~d~~v~~wd~~~~~~~~~~--~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~  408 (500)
                      .+++....+.+.+++....  ....  ...+......+++.++|+++++....+.|++||.. |+.+..+.. .+.    
T Consensus       127 i~v~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~-~g~----  198 (279)
T d1q7fa_         127 IIVVECKVMRVIIFDQNGN--VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGG-EGI----  198 (279)
T ss_dssp             EEEEETTTTEEEEECTTSC--EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESC-TTT----
T ss_pred             EEEEeeccceeeEeccCCc--eeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceeeeecc-ccc----
Confidence            3444444555666654321  1111  12345668889999999999998889999999974 555544421 110    


Q ss_pred             EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEEEECCCccccccccC--cccCEEEEEEcCCCCE
Q 010816          409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPG--HADEVFAVDWSPDGEK  485 (500)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~~--h~~~V~~l~~s~dg~~  485 (500)
                                          ......+++.++|+++++-.. ++.|.+|+. .++.+..+..  .....+.|++.|||. 
T Consensus       199 --------------------~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~-  256 (279)
T d1q7fa_         199 --------------------TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS-  256 (279)
T ss_dssp             --------------------SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE-
T ss_pred             --------------------ccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCc-
Confidence                                001122356889997776544 457999984 5666555432  234578999999996 


Q ss_pred             EEEEeCCCcEEEec
Q 010816          486 VASGGKDRVLKLWM  499 (500)
Q Consensus       486 l~s~~~D~~v~iW~  499 (500)
                      |+.++.+++|++|.
T Consensus       257 l~V~~~n~~v~~fr  270 (279)
T d1q7fa_         257 VVLASKDYRLYIYR  270 (279)
T ss_dssp             EEEEETTTEEEEEE
T ss_pred             EEEEeCCCeEEEEE
Confidence            55566889999985

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.62  E-value=7.5e-05  Score=65.26  Aligned_cols=238  Identities=12%  Similarity=0.142  Sum_probs=131.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc-----cCcccceEEEEeeeeecCCCCceEE-EEeCCCcEEEE
Q 010816          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL-----SGHKKWITGISWEPVHLNAPCRRFV-SASKDGDARIW  225 (500)
Q Consensus       152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~-s~s~dg~v~iw  225 (500)
                      ....|+++++|+++++-...+.|++||.+ |+.....-     .+....-..+.+.+    .....++ ..+.++.|..+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVR----NSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEET----TTTEEEEEECGGGCEEEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccc----cccccceeccCCccccccc
Confidence            45789999999888877778889999865 43221110     00001111222111    1112232 23445566666


Q ss_pred             ECCCCeEEEEec-CccccEEEEEeCCCCeEEEE-eCCCeEEEEeCCCCeeEEEeec--CCceEEEEEecCcceeeecccc
Q 010816          226 DVSLRKCVICLS-GHTLAVTCVKWGGDGVIYTG-SQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRTGAFD  301 (500)
Q Consensus       226 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~l~t~-~~dg~i~lwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~  301 (500)
                      +.. +.....+. ........++..+++.++.+ ...+.+.+++. +++.+..+..  +......+++.++         
T Consensus        99 ~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~---------  167 (279)
T d1q7fa_          99 NQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDK---------  167 (279)
T ss_dssp             CTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSS---------
T ss_pred             ccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccc---------
Confidence            653 44443332 23344566777777655444 44556777764 4555554421  2222333333322         


Q ss_pred             CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee--ecccCcEEEEEECCCCCEEEEEe
Q 010816          302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASAS  379 (500)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~--~~h~~~v~~l~~sp~g~~lasgs  379 (500)
                                                 +..+++....+.|+++|....  ....+  .+.......|+++++|+++++-.
T Consensus       168 ---------------------------g~i~v~d~~~~~V~~~d~~G~--~~~~~g~~g~~~~P~giavD~~G~i~Vad~  218 (279)
T d1q7fa_         168 ---------------------------QEIFISDNRAHCVKVFNYEGQ--YLRQIGGEGITNYPIGVGINSNGEILIADN  218 (279)
T ss_dssp             ---------------------------SEEEEEEGGGTEEEEEETTCC--EEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             ---------------------------eeEEeeeccccceeeeecCCc--eeeeecccccccCCcccccccCCeEEEEEC
Confidence                                       334566667788888885422  12222  23445678999999999887755


Q ss_pred             C-CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816          380 F-DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI  458 (500)
Q Consensus       380 ~-Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~  458 (500)
                      . ++.|.+|+. +|+.+.++......                         .....++..|+|.++ .++.++.|++|..
T Consensus       219 ~~~~~v~~f~~-~G~~~~~~~~~~~~-------------------------~~p~~vav~~dG~l~-V~~~n~~v~~fr~  271 (279)
T d1q7fa_         219 HNNFNLTIFTQ-DGQLISALESKVKH-------------------------AQCFDVALMDDGSVV-LASKDYRLYIYRY  271 (279)
T ss_dssp             SSSCEEEEECT-TSCEEEEEEESSCC-------------------------SCEEEEEEETTTEEE-EEETTTEEEEEEC
T ss_pred             CCCcEEEEECC-CCCEEEEEeCCCCC-------------------------CCEeEEEEeCCCcEE-EEeCCCeEEEEEe
Confidence            4 457999984 57776655422110                         001123567898755 4568899999987


Q ss_pred             CCc
Q 010816          459 RTQ  461 (500)
Q Consensus       459 ~~~  461 (500)
                      ...
T Consensus       272 ~~~  274 (279)
T d1q7fa_         272 VQL  274 (279)
T ss_dssp             SCC
T ss_pred             eee
Confidence            654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.61  E-value=2.7e-05  Score=67.38  Aligned_cols=110  Identities=5%  Similarity=-0.051  Sum_probs=73.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC
Q 010816          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS  441 (500)
Q Consensus       362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  441 (500)
                      ....++++|+|+++++...++.|..+|................-.                           .+++.++|
T Consensus       141 ~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~---------------------------gi~~d~~g  193 (260)
T d1rwia_         141 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW---------------------------GIAVDEAG  193 (260)
T ss_dssp             SCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEE---------------------------EEEECTTC
T ss_pred             CcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCc---------------------------cceeeeee
Confidence            356889999999888888889999999775433221111111111                           23567899


Q ss_pred             CEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816          442 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW  498 (500)
Q Consensus       442 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW  498 (500)
                      .++++-...+.|..++.............-....+++++++|..+++-..+++|+..
T Consensus       194 ~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         194 TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             CEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             eeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            888888788888888765543322212233456899999999887776777777643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.60  E-value=3.1e-05  Score=69.05  Aligned_cols=118  Identities=9%  Similarity=0.143  Sum_probs=73.8

Q ss_pred             CcEEEEEECCCCC-----EEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceee
Q 010816          361 QLVNHVYFSPDGQ-----WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLY  435 (500)
Q Consensus       361 ~~v~~l~~sp~g~-----~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (500)
                      ...+.++|+|++.     ++++-+..+.|+.||+.....+...+        + +.     ..+...      ......+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~--------~-~~-----~~~~~~------~~~pdGi  231 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK--------V-WG-----HIPGTH------EGGADGM  231 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE--------E-EE-----ECCCCS------SCEEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceee--------E-EE-----Eccccc------cccceee
Confidence            3457889988764     45555677888888865332221100        0 00     000000      0001123


Q ss_pred             EEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEE-EEEeCCCcEEEe
Q 010816          436 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW  498 (500)
Q Consensus       436 ~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-~s~~~D~~v~iW  498 (500)
                      ++..+|++.++....+.|.+||.+.++....+........+++|.||++.| ++.+..++|...
T Consensus       232 avD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            567899988888888999999988887766665555678999999999866 555666777654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.59  E-value=5.9e-05  Score=66.83  Aligned_cols=238  Identities=8%  Similarity=-0.006  Sum_probs=137.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-
Q 010816          152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-  230 (500)
Q Consensus       152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-  230 (500)
                      ++..++++|||+++++...+++|..|+......   .+......+.+++|.+     +++.+++...++.+..|+.... 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~---~~~~~~~~~~gla~~~-----dG~l~v~~~~~~~~~~~~~~~~~  100 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ---IHATVEGKVSGLAFTS-----NGDLVATGWNADSIPVVSLVKSD  100 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE---EEEECSSEEEEEEECT-----TSCEEEEEECTTSCEEEEEECTT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE---EEEcCCCCcceEEEcC-----CCCeEEEecCCceEEEEEecccc
Confidence            678899999999999999999999998764322   2233345567777755     5567777777788877775432 


Q ss_pred             -eEEE-EecCccccEEEEEeCCCCeEEEE-eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCC
Q 010816          231 -KCVI-CLSGHTLAVTCVKWGGDGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY  307 (500)
Q Consensus       231 -~~~~-~~~~h~~~v~~~~~~~~~~l~t~-~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  307 (500)
                       .... ...........+.+.+++.++.+ +.++.+..+|...+........           +                
T Consensus       101 ~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~-----------~----------------  153 (302)
T d2p4oa1         101 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH-----------P----------------  153 (302)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------G----------------
T ss_pred             cceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecC-----------C----------------
Confidence             1111 11123344667778777765543 4566676666655432111100           0                


Q ss_pred             CCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEE
Q 010816          308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW  387 (500)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lw  387 (500)
                                                             ....   ..........+.+.++. +.++++.+..+.|+.+
T Consensus       154 ---------------------------------------~~~~---~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~  190 (302)
T d2p4oa1         154 ---------------------------------------MLAR---SNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRI  190 (302)
T ss_dssp             ---------------------------------------GGSC---SSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             ---------------------------------------ccce---eeccCcccccccccccC-CceeeecCCCCeEEec
Confidence                                                   0000   00001112345566653 3455566677888888


Q ss_pred             eCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc-ccc
Q 010816          388 NGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL-KQD  466 (500)
Q Consensus       388 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~-~~~  466 (500)
                      +...........     ..                    ........+++.++|.+.++...++.|..++...... +..
T Consensus       191 ~~~~~~~~~~~~-----~~--------------------~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~  245 (302)
T d2p4oa1         191 PVDSTDKPGEPE-----IF--------------------VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQ  245 (302)
T ss_dssp             EBCTTSCBCCCE-----EE--------------------EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEEC
T ss_pred             cccccccccccc-----cc--------------------cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEe
Confidence            765533211000     00                    0001112247789999888888899999997754322 222


Q ss_pred             ccCcccCEEEEEE---cCCCCEEEEEeCC
Q 010816          467 LPGHADEVFAVDW---SPDGEKVASGGKD  492 (500)
Q Consensus       467 ~~~h~~~V~~l~~---s~dg~~l~s~~~D  492 (500)
                      ....-...++++|   ++|++.|+.++..
T Consensus       246 ~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         246 AEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             GGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             cCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            3333456889999   7788988766544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=0.00016  Score=62.53  Aligned_cols=221  Identities=15%  Similarity=0.136  Sum_probs=116.7

Q ss_pred             ccCCcccEEEEEEcCCCCeEEEEeCCC---cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeC
Q 010816          104 IAGHTEAVLSVAFSPDGRQLASGSGDT---TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDP  179 (500)
Q Consensus       104 ~~gh~~~V~~~~~sp~~~~lat~~~d~---~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~~wd~  179 (500)
                      +..+.+.+.+.+|||||++||-.....   .+.+.+..++... .+..+........|+|+|+.++.... ++...++..
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~  112 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  112 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeec
Confidence            334567788999999999999765432   3556666655543 44557788899999999998886554 333333322


Q ss_pred             CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE--EEEECCCCeEEEEecCccccEEEEEeCCCCe-EEE
Q 010816          180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA--RIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYT  256 (500)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v--~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t  256 (500)
                      .....................+.+    .....+++...++..  .+.++..+... .+..+........|++++. ++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~  187 (269)
T d2hqsa1         113 DLASGQIRQVTDGRSNNTEPTWFP----DSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVM  187 (269)
T ss_dssp             ETTTCCEEECCCCSSCEEEEEECT----TSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEE
T ss_pred             ccccccceeeeecccccccccccc----ccccceecccccCCceEeeeecccccce-eeecccccccccccccccceeEE
Confidence            211111111111111111122221    122344555555544  44455444322 2334455667778998874 333


Q ss_pred             -EeCCCeE--EEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816          257 -GSQDCTI--KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV  333 (500)
Q Consensus       257 -~~~dg~i--~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (500)
                       ....+..  .+.|...+..  .+...........++|++                                    ..|+
T Consensus       188 ~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG------------------------------------~~i~  229 (269)
T d2hqsa1         188 VSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNG------------------------------------TMVI  229 (269)
T ss_dssp             EEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTS------------------------------------SEEE
T ss_pred             EeecCCceeeeEeecccccc--eEeecCccccceEECCCC------------------------------------CEEE
Confidence             3444444  4445444432  222333344556676653                                    2333


Q ss_pred             -Eee--CCCeEEEEcCCCCCCCceeeecccCcEEEEEECC
Q 010816          334 -SGS--DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP  370 (500)
Q Consensus       334 -s~s--~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp  370 (500)
                       ...  ....++++++...  ....+......+...+|||
T Consensus       230 f~s~~~~~~~l~~~~~dg~--~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         230 YSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEEETTEEEEEEEETTSC--CEEECCCSSSEEEEEEECC
T ss_pred             EEEcCCCCcEEEEEECCCC--CEEEEeCCCCcEEeEEeCC
Confidence             222  2335777776543  2344555566777888988

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.34  E-value=0.00062  Score=60.46  Aligned_cols=238  Identities=11%  Similarity=0.122  Sum_probs=125.2

Q ss_pred             EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC-----CCeEEEEeCCCC
Q 010816          197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ-----DCTIKVWETTQG  271 (500)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~-----dg~i~lwd~~~~  271 (500)
                      .++.|.+     ++..+++-...+.|..|+...+.....+.........++++++|.++.+..     .+.+...+...+
T Consensus        43 EG~~~D~-----~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          43 EGLNFDR-----QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEEEECT-----TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             EeCEECC-----CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            4555543     334566666777787788776655554444445567889999987766542     233444454444


Q ss_pred             eeEEEeec--CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC
Q 010816          272 KLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS  349 (500)
Q Consensus       272 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~  349 (500)
                      ........  .......+++.++..+..+......                              ....+.+..++... 
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~------------------------------~~~~g~v~~~~~dg-  166 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS------------------------------TNPLGGVYYVSPDF-  166 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT------------------------------TBCCEEEEEECTTS-
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeeccccccc------------------------------ccCcceeEEEeccc-
Confidence            33322221  1122334444443221111000000                              00012233333321 


Q ss_pred             CCCceeeecccCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeee
Q 010816          350 KQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD  427 (500)
Q Consensus       350 ~~~~~~~~~h~~~v~~l~~sp~g~~l-asgs~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  427 (500)
                       .....+...-...+.++|+|+++.| ++-+..+.|+.|++... ........      .+..      ...        
T Consensus       167 -~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~------~~~~------~~~--------  225 (319)
T d2dg1a1         167 -RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA------TIPY------YFT--------  225 (319)
T ss_dssp             -CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE------EEEE------ECC--------
T ss_pred             -ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccc------eeee------ccC--------
Confidence             1122222233456789999999865 55566889999987542 22111110      0000      000        


Q ss_pred             ccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc--c----CcccCEEEEEEcCCCCEEEEEeCC
Q 010816          428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL--P----GHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       428 ~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~--~----~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      .......+++.++|++.++....+.|.+||- .++.+..+  +    ++...+++++|.|++..+++...|
T Consensus       226 ~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         226 GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence            0000112356789998888888999999995 56655433  2    345567899999988888776543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=0.00028  Score=66.39  Aligned_cols=147  Identities=16%  Similarity=0.236  Sum_probs=88.7

Q ss_pred             EEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecC---CCCCEEEEEEcCCCCEEEEEe---------CCCeEEEEeCCCC
Q 010816          115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG---HKNWVLCIAWSADGKHLVSGS---------KAGELQCWDPQTG  182 (500)
Q Consensus       115 ~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~---h~~~v~~v~~s~~~~~l~s~~---------~d~~i~~wd~~~~  182 (500)
                      .|.+++.++.. ..+|.|.+||+.++.....+..   ....+....||||+++|+...         ..+.+.++|+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            57778776543 4678899999987765433332   223567788999999887653         3567889999887


Q ss_pred             Ccccc-cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccE-----------------
Q 010816          183 KPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAV-----------------  243 (500)
Q Consensus       183 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v-----------------  243 (500)
                      ..... ........+....|+|     ++..++-.. ++.+.+.+...+..+.... +....|                 
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSP-----DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~  175 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGP-----KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCS-----STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ceeeccCccCCccccceeeecc-----CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcccc
Confidence            64321 1112223344566766     455666544 5678888776655443322 211111                 


Q ss_pred             EEEEeCCCCe-EEEEe-CCCeEEEEeC
Q 010816          244 TCVKWGGDGV-IYTGS-QDCTIKVWET  268 (500)
Q Consensus       244 ~~~~~~~~~~-l~t~~-~dg~i~lwd~  268 (500)
                      ..+.|+|||. |+... .+..+..+.+
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             ceEEECCCCCeEEEEEecccccceeec
Confidence            4567999984 44433 4455555543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.23  E-value=0.0015  Score=57.93  Aligned_cols=60  Identities=15%  Similarity=0.099  Sum_probs=46.3

Q ss_pred             cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe
Q 010816          110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS  169 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~  169 (500)
                      .+-.++|+++|++.++-...+.|..|+.+++...............++|.+||+++++..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~  100 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYL  100 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEEC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEec
Confidence            345789999999777777888999999887765544445556788999999998777653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=0.00077  Score=63.26  Aligned_cols=75  Identities=11%  Similarity=0.038  Sum_probs=53.2

Q ss_pred             cEEEEEEcCCCCeEEEEe---------CCCcEEEEeCCCCceeEE--ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816          110 AVLSVAFSPDGRQLASGS---------GDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD  178 (500)
Q Consensus       110 ~V~~~~~sp~~~~lat~~---------~d~~i~iwd~~~~~~~~~--~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd  178 (500)
                      .+....||||+++++.+.         ..+.+.|+|+.++.....  .......+....|||||+.||-.. ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            456778999999887763         356789999988764321  122344566688999999988765 67788888


Q ss_pred             CCCCCcc
Q 010816          179 PQTGKPS  185 (500)
Q Consensus       179 ~~~~~~~  185 (500)
                      ..++...
T Consensus       141 ~~~~~~~  147 (465)
T d1xfda1         141 HVGKQAI  147 (465)
T ss_dssp             SSSSCCE
T ss_pred             cCCCceE
Confidence            7665543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.07  E-value=0.00022  Score=64.82  Aligned_cols=159  Identities=9%  Similarity=-0.003  Sum_probs=85.6

Q ss_pred             cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecC--CCCCEEEEEEcCCCCE--EEEEeC-CCeEEEEeCCCC
Q 010816          108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG--HKNWVLCIAWSADGKH--LVSGSK-AGELQCWDPQTG  182 (500)
Q Consensus       108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~s~~~~~--l~s~~~-d~~i~~wd~~~~  182 (500)
                      ...+..|+|+|++++|.++.. +.+..|.+.....+.....  .......+.++++++.  ++++.+ .+++..+.....
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            344557999999999988765 4577776654332222211  1223455677788874  333332 345554433211


Q ss_pred             -------------Ccc---cccccCcccceEEEEeeeeecCCCCceEEEEe-CCCcEEEEECCCC-eEE--EEe--cCcc
Q 010816          183 -------------KPS---GNPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLR-KCV--ICL--SGHT  240 (500)
Q Consensus       183 -------------~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~-~~~--~~~--~~h~  240 (500)
                                   +..   ..........+.++.|.|     ++++++++. ....|.+|+.... ...  ...  ....
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-----dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-----TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECC-----CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCC
Confidence                         000   000001112245666655     555555554 3457888876432 221  111  1223


Q ss_pred             ccEEEEEeCCCCe-E-EEEeCCCeEEEEeCCCCe
Q 010816          241 LAVTCVKWGGDGV-I-YTGSQDCTIKVWETTQGK  272 (500)
Q Consensus       241 ~~v~~~~~~~~~~-l-~t~~~dg~i~lwd~~~~~  272 (500)
                      .....+.|++++. + ++...+++|.+|+...++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            4567889999884 3 455678999999986654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.84  E-value=0.0014  Score=56.49  Aligned_cols=68  Identities=15%  Similarity=0.237  Sum_probs=48.9

Q ss_pred             EEcCC--CCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC-C---C--eEEEEeCCCCCc
Q 010816          115 AFSPD--GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-A---G--ELQCWDPQTGKP  184 (500)
Q Consensus       115 ~~sp~--~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d---~--~i~~wd~~~~~~  184 (500)
                      ..+||  |+.+|-.+ ++.|.+.|+.+++.. .+..+.+.+....|||||+.||-... +   .  .|.+++..+++.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            35788  99888664 346888899887764 46667778899999999999985432 2   2  366667766654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.67  E-value=0.014  Score=50.57  Aligned_cols=208  Identities=13%  Similarity=0.078  Sum_probs=114.3

Q ss_pred             CCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeec----CCceEEEEEecCcc
Q 010816          218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEY  293 (500)
Q Consensus       218 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~----~~~~v~~~~~~~~~  293 (500)
                      ..+.|.-||..+++.....  ....+.++++.+++.++.++.+ .+.++|..+++.......    .......+.+.++.
T Consensus        38 ~~~~I~r~d~~~g~~~~~~--~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G  114 (295)
T d2ghsa1          38 LERELHELHLASGRKTVHA--LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG  114 (295)
T ss_dssp             GGTEEEEEETTTTEEEEEE--CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred             CCCEEEEEECCCCeEEEEE--CCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCC
Confidence            4567777887776543221  2335778888888888877775 588899988875433221    12234555555543


Q ss_pred             eeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC
Q 010816          294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ  373 (500)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~  373 (500)
                      .+-.+......                                ..+.-.+|.....  ....+...-..-+.++|+++++
T Consensus       115 ~iw~~~~~~~~--------------------------------~~~~g~l~~~~~g--~~~~~~~~~~~~Ng~~~s~d~~  160 (295)
T d2ghsa1         115 ALWIGTMGRKA--------------------------------ETGAGSIYHVAKG--KVTKLFADISIPNSICFSPDGT  160 (295)
T ss_dssp             CEEEEEEETTC--------------------------------CTTCEEEEEEETT--EEEEEEEEESSEEEEEECTTSC
T ss_pred             CEEEEeccccc--------------------------------cccceeEeeecCC--cEEEEeeccCCcceeeecCCCc
Confidence            22221111000                                0011122221111  1112222234467899999998


Q ss_pred             EE-EEEeCCCcEEEEeCCCC--ce------EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEE
Q 010816          374 WV-ASASFDKSIKLWNGTTG--KF------VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL  444 (500)
Q Consensus       374 ~l-asgs~Dg~i~lwd~~~~--~~------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  444 (500)
                      .+ ++-+..+.|+.|++...  ..      ...+.+-.+.                           .-..+...+|.+.
T Consensus       161 ~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~---------------------------pdG~~vD~~GnlW  213 (295)
T d2ghsa1         161 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGG---------------------------MDGSVCDAEGHIW  213 (295)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSE---------------------------EEEEEECTTSCEE
T ss_pred             eEEEeecccceeeEeeecccccccccceEEEeccCccccc---------------------------ccceEEcCCCCEE
Confidence            55 45566788888876431  11      0000111111                           1112456788888


Q ss_pred             EEEECCCcEEEEECCCccccccccCcccCEEEEEEc-CCCCEEEEEe
Q 010816          445 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASGG  490 (500)
Q Consensus       445 ~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s-~dg~~l~s~~  490 (500)
                      ++.-..+.|..||- .++.+..+.--...+++++|- ||.+.|+..+
T Consensus       214 va~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         214 NARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             eeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            77777888999995 566666554334568999995 7877776543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.03  E-value=0.045  Score=52.23  Aligned_cols=113  Identities=12%  Similarity=0.100  Sum_probs=58.3

Q ss_pred             CCCeEEEEeCCCcEEEEeC-CCCceeEEecCCC----CC------E-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816          119 DGRQLASGSGDTTVRLWDL-NTQTPMFKCTGHK----NW------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG  186 (500)
Q Consensus       119 ~~~~lat~~~d~~i~iwd~-~~~~~~~~~~~h~----~~------v-~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~  186 (500)
                      +|...++.+.++.|.-.|. ++++.+.++....    ..      + ..+++.  +..|+.++.|+.+..-|.++|+...
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence            3333333334566766675 3577766543100    00      0 123332  3467788899999999999987532


Q ss_pred             ccccCcccceEEEEeeeeecCCCCceEEEEe------CCCcEEEEECCCCeEEEEe
Q 010816          187 NPLSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICL  236 (500)
Q Consensus       187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s------~dg~v~iwd~~~~~~~~~~  236 (500)
                      ..-......-..+.-.|.-.   ...++.+.      .+|.|+-+|+.+++.+..+
T Consensus       140 ~~~~~~~~~~~~~t~~p~v~---~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQAPFVA---KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEE---TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             cccccccccccceeecCeEe---CCeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence            21000000000111111111   12444444      3678999999999987754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.02  E-value=0.087  Score=50.02  Aligned_cols=111  Identities=15%  Similarity=0.112  Sum_probs=60.0

Q ss_pred             CeEEEEeCCCcEEEEeCCCCceeEEecCCC----------CCE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc
Q 010816          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHK----------NWV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL  189 (500)
Q Consensus       121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~----------~~v-~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  189 (500)
                      ..|..++.++.|.=.|.++++.+.++....          ..+ ..+..  .+..++.+..|+.|...|..+|+......
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~  144 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence            345566677878777888888877643110          000 01111  24578888889999988988887543211


Q ss_pred             cCcccceEEEEeeeeecCCCCceEEEEe------CCCcEEEEECCCCeEEEEe
Q 010816          190 SGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICL  236 (500)
Q Consensus       190 ~~~~~~v~~~~~~~~~~~~~~~~~~s~s------~dg~v~iwd~~~~~~~~~~  236 (500)
                      ......-..+.-.|.-   ....++.++      ..|.|+-+|.++++.+-.+
T Consensus       145 ~~~~~~~~~~~~~p~v---~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  194 (560)
T d1kv9a2         145 TTDPAKPYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (560)
T ss_dssp             CSCTTSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ccCcccceeeeeeeee---ecCcccccccceeccccceEEEEECCCceEEeee
Confidence            1100000001001110   012334432      2367999999999887765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.01  E-value=0.11  Score=46.52  Aligned_cols=114  Identities=16%  Similarity=0.161  Sum_probs=65.5

Q ss_pred             EEEEcCCCCeEEEEeCCC-----------cEEEEeCCCCcee--E-EecCCCCCEEEEEEcCCCCEEEEEeCC-CeEEEE
Q 010816          113 SVAFSPDGRQLASGSGDT-----------TVRLWDLNTQTPM--F-KCTGHKNWVLCIAWSADGKHLVSGSKA-GELQCW  177 (500)
Q Consensus       113 ~~~~sp~~~~lat~~~d~-----------~i~iwd~~~~~~~--~-~~~~h~~~v~~v~~s~~~~~l~s~~~d-~~i~~w  177 (500)
                      ......+|+.++.|+.+.           .+.+||..++.-.  . ....|........+.++|++++.|+.+ ..+.+|
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            334456888888887431           3779999876421  1 122343334456788999999988766 589999


Q ss_pred             eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCC------CcEEEEECCCCe
Q 010816          178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD------GDARIWDVSLRK  231 (500)
Q Consensus       178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d------g~v~iwd~~~~~  231 (500)
                      |+.+..............-....     ...+++.++.|+.+      ..+.+||..+.+
T Consensus       104 d~~~~~w~~~~~~~~~r~~~~~~-----~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         104 DSSSDSWIPGPDMQVARGYQSSA-----TMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EGGGTEEEECCCCSSCCSSCEEE-----ECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cCccCccccccccccccccccee-----eecCCceeeeccccccccccceeeeecCCCCc
Confidence            98765432111000000001111     11245567776543      368899988765

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.98  E-value=0.073  Score=50.92  Aligned_cols=71  Identities=14%  Similarity=0.147  Sum_probs=42.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeC------CCcEEEEECCCCeEEEEe
Q 010816          163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICL  236 (500)
Q Consensus       163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~------dg~v~iwd~~~~~~~~~~  236 (500)
                      .+++.++.|+.|.--|.++|+.......+....-..+.-.|.-.   ..+++.++.      .|.|+-+|+++++.+-.+
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~---~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV---KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE---TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE---CCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence            46888999999999999999764322111100000111112111   134555543      488999999999988764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.92  E-value=0.1  Score=44.87  Aligned_cols=206  Identities=10%  Similarity=0.058  Sum_probs=114.5

Q ss_pred             EEEcCC-CCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE
Q 010816          156 IAWSAD-GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI  234 (500)
Q Consensus       156 v~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~  234 (500)
                      ..|.+. +.+..+--..+.|..||+.+++.....+   ...+.++.+.+     + ..++.++.+ .+..+|..+++...
T Consensus        23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~---~~~~~~i~~~~-----d-g~l~va~~~-gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILERELHELHLASGRKTVHAL---PFMGSALAKIS-----D-SKQLIASDD-GLFLRDTATGVLTL   92 (295)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC---SSCEEEEEEEE-----T-TEEEEEETT-EEEEEETTTCCEEE
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCeEEEEEC---CCCcEEEEEec-----C-CCEEEEEeC-ccEEeecccceeeE
Confidence            345553 3333343456788888887775432112   23345555433     2 245555655 58889998876543


Q ss_pred             Eec--C--ccccEEEEEeCCCCeEEEEeCC-----CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCC
Q 010816          235 CLS--G--HTLAVTCVKWGGDGVIYTGSQD-----CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK  305 (500)
Q Consensus       235 ~~~--~--h~~~v~~~~~~~~~~l~t~~~d-----g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  305 (500)
                      ...  .  ....+..+...++|.++.++.+     +.-.+|.+..++....... -..-..++++++.            
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~------------  159 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDG------------  159 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTS------------
T ss_pred             EeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCC------------
Confidence            221  1  1235778888899987776532     2345555555544332221 1112233333321            


Q ss_pred             CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC----c---eeeecccCcEEEEEECCCCCEEEEE
Q 010816          306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP----K---TRMTGHQQLVNHVYFSPDGQWVASA  378 (500)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~----~---~~~~~h~~~v~~l~~sp~g~~lasg  378 (500)
                                             ...+++-+..+.|..++.......    .   ....+.......+++..+|++.++.
T Consensus       160 -----------------------~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~  216 (295)
T d2ghsa1         160 -----------------------TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR  216 (295)
T ss_dssp             -----------------------CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             -----------------------ceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeee
Confidence                                   123456666778887765422111    1   1112334457889999999988777


Q ss_pred             eCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816          379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQI  408 (500)
Q Consensus       379 s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~  408 (500)
                      -..+.|..||. +|+.+..+.--...++++
T Consensus       217 ~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~  245 (295)
T d2ghsa1         217 WGEGAVDRYDT-DGNHIARYEVPGKQTTCP  245 (295)
T ss_dssp             ETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred             eCCCceEEecC-CCcEeeEecCCCCceEEE
Confidence            67888999995 677777665433334444

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.89  E-value=0.097  Score=44.15  Aligned_cols=89  Identities=12%  Similarity=0.143  Sum_probs=54.7

Q ss_pred             EcCC--CCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeC-CC-----cEEEEECCC
Q 010816          158 WSAD--GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DG-----DARIWDVSL  229 (500)
Q Consensus       158 ~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~-dg-----~v~iwd~~~  229 (500)
                      .+||  |+.++-.+ ++.|.+.|+.+++..  .+..+........|+|     ++++++..+. ++     .+.+++...
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~--~Lt~~~~~~~~p~~SP-----DG~~iaf~~~~~~~~~~~~i~~~~~~~   77 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR--KIVSNLGVINNARFFP-----DGRKIAIRVMRGSSLNTADLYFYNGEN   77 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEE--EEECSSSEEEEEEECT-----TSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEE--EEecCCCcccCEEECC-----CCCEEEEEEeeCCCCCceEEEEEEecC
Confidence            4688  88887654 466888899887653  3455566677788877     5566764432 22     366777777


Q ss_pred             CeEEEEecC------ccccEEEEEeCCCCeE
Q 010816          230 RKCVICLSG------HTLAVTCVKWGGDGVI  254 (500)
Q Consensus       230 ~~~~~~~~~------h~~~v~~~~~~~~~~l  254 (500)
                      ++.......      .........|++++..
T Consensus        78 g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~  108 (281)
T d1k32a2          78 GEIKRITYFSGKSTGRRMFTDVAGFDPDGNL  108 (281)
T ss_dssp             TEEEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred             CceEEeeecCCCccCccccccccccCCCCCE
Confidence            665432211      1223456778888753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.58  E-value=0.2  Score=47.59  Aligned_cols=109  Identities=17%  Similarity=0.130  Sum_probs=59.7

Q ss_pred             eEEEEeCCCcEEEEeCCCCceeEEecCCC----------CCE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc-c
Q 010816          122 QLASGSGDTTVRLWDLNTQTPMFKCTGHK----------NWV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-L  189 (500)
Q Consensus       122 ~lat~~~d~~i~iwd~~~~~~~~~~~~h~----------~~v-~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~  189 (500)
                      .|..++.++.|.=.|.++++.+..+....          ..+ ..+.+.  ...++.++.|+.+...|..+|+..... .
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~  156 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNT  156 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecccC
Confidence            45666777888888888888776643110          011 112221  346777788888888888888754221 1


Q ss_pred             c-CcccceEEEEeeeeecCCCCceEEEEeC------CCcEEEEECCCCeEEEEe
Q 010816          190 S-GHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICL  236 (500)
Q Consensus       190 ~-~~~~~v~~~~~~~~~~~~~~~~~~s~s~------dg~v~iwd~~~~~~~~~~  236 (500)
                      . .....+ .+.-.|...   ...++.++.      .|.|+-+|.++++.+..+
T Consensus       157 ~~~~~~~~-~~~~~p~v~---~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         157 FEGQKGSL-TITGAPRVF---KGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             TTTCCSSC-BCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ccCCcceE-EeecceEEE---eccEEEeeccccccccceEEEEecCCccceeee
Confidence            1 111111 011111111   124454432      467999999999987764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.84  E-value=0.42  Score=40.18  Aligned_cols=208  Identities=9%  Similarity=0.129  Sum_probs=119.8

Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816          249 GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA  328 (500)
Q Consensus       249 ~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (500)
                      +|...+++--...++.+||+++.+.++...-.+.-+.- .|-.                                     
T Consensus        71 hP~~~IiALrag~~LQiFnletK~klks~~~~e~VvfW-kWis-------------------------------------  112 (327)
T d1utca2          71 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFW-KWIS-------------------------------------  112 (327)
T ss_dssp             CSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEE-EESS-------------------------------------
T ss_pred             CCCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEE-EecC-------------------------------------
Confidence            44444433223668999999998887766544322211 1110                                     


Q ss_pred             CcEEEEeeCCCeEEEEcCCCCCCCceeeeccc----CcEEEEEECCCCCEEEEEe---C----CCcEEEEeCCCCceEEE
Q 010816          329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ----QLVNHVYFSPDGQWVASAS---F----DKSIKLWNGTTGKFVAV  397 (500)
Q Consensus       329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~----~~v~~l~~sp~g~~lasgs---~----Dg~i~lwd~~~~~~~~~  397 (500)
                      .+.|+- =.+..|+-|++.....|...+..|.    ..|..-..+++.++++..+   .    .|.+.+|..+.+. -..
T Consensus       113 ~~~L~l-VT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~  190 (327)
T d1utca2         113 LNTVAL-VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQP  190 (327)
T ss_dssp             SSEEEE-ECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEE
T ss_pred             CCEEEE-EcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Ccc
Confidence            112221 1345799999866556666665554    3477778889999887543   2    3678999987643 233


Q ss_pred             EeCCcccEEEEEee------eeeeecC---CCCceeeeec------------------------cccceeeEEcCCCCEE
Q 010816          398 FRGHVGPVYQIRFE------LIYCFRY---PSNFYCVVDM------------------------SCCMSLYSWSADSRLL  444 (500)
Q Consensus       398 ~~~h~~~v~~~~~~------~~~~~~~---~~~~~~~~~~------------------------~~~~~~~~~s~~~~~l  444 (500)
                      ++||.+.-..++.+      .+.|+..   .......++.                        ..+......|+.-.++
T Consensus       191 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygii  270 (327)
T d1utca2         191 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV  270 (327)
T ss_dssp             ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEE
T ss_pred             ccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEE
Confidence            45555444443321      0111100   0000000000                        0111222345556678


Q ss_pred             EEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816          445 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK  496 (500)
Q Consensus       445 ~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~  496 (500)
                      ..-..-|.+++||++++.++..-+--.+.|+..+-+.+..-++....+|.|.
T Consensus       271 yviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         271 FLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            8888999999999999998876555567787666666666778878888774

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.29  E-value=1.2  Score=41.90  Aligned_cols=63  Identities=14%  Similarity=0.120  Sum_probs=40.1

Q ss_pred             CeEEEEeCCCcEEEEeCCCCceeEEecCCC--------CCE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc
Q 010816          121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHK--------NWV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPS  185 (500)
Q Consensus       121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~--------~~v-~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~  185 (500)
                      ..|..++.++.|.=.|..+++.+.++....        ..+ ..+++  .+..++.++.|+.+...|..+|+..
T Consensus        69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~~~~l~alda~tG~~~  140 (582)
T d1flga_          69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVV  140 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEE
T ss_pred             CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE--eCCceEEecCCCeEEEeccccccee
Confidence            456667777877777888888776642110        001 11222  2356777888999888899988754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.79  E-value=0.69  Score=43.52  Aligned_cols=59  Identities=12%  Similarity=0.269  Sum_probs=40.3

Q ss_pred             CcEEEEECCCCeEEEEecCccccEE-EEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeec
Q 010816          220 GDARIWDVSLRKCVICLSGHTLAVT-CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (500)
Q Consensus       220 g~v~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~  279 (500)
                      |.+.-||+.+++.+....-...... .++ ...++++.|+.||.++-+|..+|+.+.+++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~-TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLS-TAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeE-ECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            5677888888887665431110000 111 2357888999999999999999999987653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.13  E-value=2.1  Score=40.08  Aligned_cols=60  Identities=18%  Similarity=0.238  Sum_probs=39.5

Q ss_pred             CcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeec
Q 010816          220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (500)
Q Consensus       220 g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~  279 (500)
                      |.+.-+|+.+++.+.....-........-..++++++|+.|+.++-+|.++|+.+.+++-
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l  503 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence            467777888887665432111000000112367888999999999999999999987753

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.63  E-value=1.7  Score=39.13  Aligned_cols=99  Identities=18%  Similarity=0.203  Sum_probs=60.4

Q ss_pred             EEEEEECCCCCEEEEE-eCCC----cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816          363 VNHVYFSPDGQWVASA-SFDK----SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW  437 (500)
Q Consensus       363 v~~l~~sp~g~~lasg-s~Dg----~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (500)
                      +..+++|||++++|-+ +.+|    .|+++|+.+|+.+...      +...+                      ...++|
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~------i~~~~----------------------~~~~~W  178 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV------LERVK----------------------FSCMAW  178 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE------EEEEC----------------------SCCEEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc------ccccc----------------------ccceEE
Confidence            4557889999988844 2233    6999999999875311      10110                      122368


Q ss_pred             cCCCCEEEEEECC----------------CcEEEEECCCccccc--cccC--cccCEEEEEEcCCCCEEEEE
Q 010816          438 SADSRLLLSGSKD----------------STLKVWDIRTQKLKQ--DLPG--HADEVFAVDWSPDGEKVASG  489 (500)
Q Consensus       438 s~~~~~l~s~s~d----------------~~v~iwd~~~~~~~~--~~~~--h~~~V~~l~~s~dg~~l~s~  489 (500)
                      ++|++.|+-...|                ..|.++.+.+.....  .+..  ....+..+..++|+++++..
T Consensus       179 ~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         179 THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence            9999877655433                247777776643321  1222  22346677889999998643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.73  E-value=3.3  Score=38.75  Aligned_cols=59  Identities=15%  Similarity=0.267  Sum_probs=40.9

Q ss_pred             CcEEEEECCCCeEEEEecCccccE-EEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeec
Q 010816          220 GDARIWDVSLRKCVICLSGHTLAV-TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (500)
Q Consensus       220 g~v~iwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~  279 (500)
                      |.+.-||+.+++.+-......... ..++. ..+.+++|+.||.++.+|..+|+.+.++.-
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            567788888888776543221110 11222 356888999999999999999999987753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.73  E-value=4.5  Score=33.21  Aligned_cols=217  Identities=10%  Similarity=0.008  Sum_probs=106.6

Q ss_pred             cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEE-EEeCCCeEEEEeCCCC
Q 010816          194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIY-TGSQDCTIKVWETTQG  271 (500)
Q Consensus       194 ~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~-t~~~dg~i~lwd~~~~  271 (500)
                      ..+.+++|.+.    ....+.+-..++.|+..++........+.........+++.. .+.|+ +-...+.|.+.++...
T Consensus        36 ~~~~~ld~D~~----~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~  111 (263)
T d1npea_          36 KVIIGLAFDCV----DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEEEETT----TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEEeC----CCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc
Confidence            34555655432    223445555667788777765544433433333456666642 34454 5556778999988654


Q ss_pred             eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC--CCeEEEEcCCCC
Q 010816          272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--DFTMFLWEPAVS  349 (500)
Q Consensus       272 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~--d~~v~~wd~~~~  349 (500)
                      .....+.........+++.|...                                   ..+.+-..  ...|.--++...
T Consensus       112 ~~~~l~~~~l~~p~~l~vdp~~g-----------------------------------~ly~t~~~~~~~~I~r~~~dG~  156 (263)
T d1npea_         112 QRRVLFDTGLVNPRGIVTDPVRG-----------------------------------NLYWTDWNRDNPKIETSHMDGT  156 (263)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTT-----------------------------------EEEEEECCSSSCEEEEEETTSC
T ss_pred             eEEEEecccccCCcEEEEecccC-----------------------------------cEEEeecCCCCcEEEEecCCCC
Confidence            33222222223455666655311                                   11111111  112222222211


Q ss_pred             CCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeec
Q 010816          350 KQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM  428 (500)
Q Consensus       350 ~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  428 (500)
                       .........-.....+++++.++.|... ...+.|...++........+.+-..| ..+                    
T Consensus       157 -~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P-~~l--------------------  214 (263)
T d1npea_         157 -NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP-FAV--------------------  214 (263)
T ss_dssp             -CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSE-EEE--------------------
T ss_pred             -CceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCc-EEE--------------------
Confidence             1111122222456789998877666444 45678888887654433333322111 111                    


Q ss_pred             cccceeeEEcCCCCEEEEEE-CCCcEEEEECCCcccccccc-CcccCEEEEEEc
Q 010816          429 SCCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLP-GHADEVFAVDWS  480 (500)
Q Consensus       429 ~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s  480 (500)
                             +.  ++..|.... ..+.|...|..+++....+. ......+++..-
T Consensus       215 -------av--~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~  259 (263)
T d1npea_         215 -------TS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA  259 (263)
T ss_dssp             -------EE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred             -------EE--ECCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEe
Confidence                   22  244555444 56788888988777654432 233344455443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.57  E-value=5.5  Score=32.66  Aligned_cols=161  Identities=9%  Similarity=0.014  Sum_probs=88.8

Q ss_pred             CcccEEEEEEcCCCCeEEEEe-CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCc
Q 010816          107 HTEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKP  184 (500)
Q Consensus       107 h~~~V~~~~~sp~~~~lat~~-~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s-~~~d~~i~~wd~~~~~~  184 (500)
                      +...+.+++|++..++|.-+. .++.|+..++.+.............+..+++..-+..|.. -...+.|.+.++.....
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            344577899999888887765 5677888888765544334333356888999766666654 44567899998865432


Q ss_pred             ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEE--ECCCCeEEEEecCccccEEEEEeCCC-CeEEEE-eCC
Q 010816          185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW--DVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTG-SQD  260 (500)
Q Consensus       185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~-~~d  260 (500)
                      . ......-....+++..|..    +..+.+-...+..+|+  ++............-.....+++++. +.|+.+ ...
T Consensus       114 ~-~l~~~~l~~p~~l~vdp~~----g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~  188 (263)
T d1npea_         114 R-VLFDTGLVNPRGIVTDPVR----GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (263)
T ss_dssp             E-EEECSSCSSEEEEEEETTT----TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             E-EEecccccCCcEEEEeccc----CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCC
Confidence            1 1222222344566655421    2233332222233344  33322222222222233456777543 455444 456


Q ss_pred             CeEEEEeCCCCe
Q 010816          261 CTIKVWETTQGK  272 (500)
Q Consensus       261 g~i~lwd~~~~~  272 (500)
                      +.|...|+....
T Consensus       189 ~~I~~~~~~g~~  200 (263)
T d1npea_         189 HRAECLNPAQPG  200 (263)
T ss_dssp             TEEEEEETTEEE
T ss_pred             CEEEEEECCCCC
Confidence            788888875433

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=87.99  E-value=5  Score=31.48  Aligned_cols=166  Identities=12%  Similarity=0.186  Sum_probs=87.0

Q ss_pred             ccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeec-CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816          241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE  319 (500)
Q Consensus       241 ~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (500)
                      ..|.++++......++|+......+|-+..|++.+-..- .-..|..+.  .++..-.+.                    
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~--~d~I~G~g~--------------------  161 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR--GDLIAGLGF--------------------  161 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE--TTEEEEEEE--------------------
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEecc--CCeEEEEee--------------------
Confidence            678889998888899999988899998887765432211 111222221  111111110                    


Q ss_pred             hhhhhcCCCCcEEEEeeC-CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCCCce
Q 010816          320 RYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF----DKSIKLWNGTTGKF  394 (500)
Q Consensus       320 ~~~~~~~~~~~~~~s~s~-d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~----Dg~i~lwd~~~~~~  394 (500)
                          +.+++.. ++++.- .|.++++++.            +..++...+.+..+. +++-.    ...| -+|.++++.
T Consensus       162 ----~~g~~~s-fF~adl~SG~lri~tpk------------eGS~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~y  222 (313)
T d2hu7a1         162 ----FGGGRVS-LFTSNLSSGGLRVFDSG------------EGSFSSASISPGMKV-TAGLETAREARLV-TVDPRDGSV  222 (313)
T ss_dssp             ----EETTEEE-EEEEETTTEEEEEECCS------------SEEEEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCE
T ss_pred             ----ecCCcce-EEEEecccCCEEEecCC------------CCcccceeEccCcee-eeccCCCCceEEE-EEecccCce
Confidence                1111222 333333 7777777642            345666677765554 33321    1223 336655442


Q ss_pred             EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC
Q 010816          395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG  469 (500)
Q Consensus       395 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~  469 (500)
                      -.           +.+        |....... -...++.+-+.|++++++.+-.||.=++|.  .++.+...+|
T Consensus       223 er-----------ve~--------P~kd~~sy-~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p~G  275 (313)
T d2hu7a1         223 ED-----------LEL--------PSKDFSSY-RPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEAPQG  275 (313)
T ss_dssp             EE-----------CCC--------SSCHHHHH-CCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECCCSS
T ss_pred             ee-----------eec--------Ccccceee-cceEEEeeeeCCCCcEEEEEecCCchheee--cceEecCCCC
Confidence            21           111        11100000 001123344789999999999999999996  4555554444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.91  E-value=11  Score=35.21  Aligned_cols=68  Identities=10%  Similarity=0.155  Sum_probs=45.6

Q ss_pred             ceEEEEeCCCcEEEEECCCCeEEEEecCcc----ccEEEEEeCCCCeEEEEeC------CCeEEEEeCCCCeeEEEee
Q 010816          211 RRFVSASKDGDARIWDVSLRKCVICLSGHT----LAVTCVKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELK  278 (500)
Q Consensus       211 ~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~l~t~~~------dg~i~lwd~~~~~~~~~~~  278 (500)
                      .+++.++.|+.+.-.|.++++.+..+....    ..++..-.--++.++.+..      .|.|+-+|..+|+.+..+.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            467888999999999999999887664211    1111100011456666653      4889999999999987654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=85.44  E-value=11  Score=33.07  Aligned_cols=71  Identities=14%  Similarity=0.102  Sum_probs=45.8

Q ss_pred             cccceeeEEcCCCCEEEEEE-CCCcEEEEECCCcccc--------ccc---cCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816          429 SCCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKLK--------QDL---PGHADEVFAVDWSPDGEKVASGGKDRVLK  496 (500)
Q Consensus       429 ~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~--------~~~---~~h~~~V~~l~~s~dg~~l~s~~~D~~v~  496 (500)
                      ......+..+|||+++++++ .+.+|-++|+++-...        ..+   ....-.-...+|+.+|....|-=-|++|-
T Consensus       274 pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~  353 (459)
T d1fwxa2         274 ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVV  353 (459)
T ss_dssp             ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEE
T ss_pred             CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEE
Confidence            33444457799999988766 6899999998752211        010   11122345678888886555556899998


Q ss_pred             Eec
Q 010816          497 LWM  499 (500)
Q Consensus       497 iW~  499 (500)
                      -|+
T Consensus       354 kw~  356 (459)
T d1fwxa2         354 KWN  356 (459)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            886

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.93  E-value=4.3  Score=37.99  Aligned_cols=61  Identities=21%  Similarity=0.234  Sum_probs=42.4

Q ss_pred             CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeec
Q 010816          219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG  279 (500)
Q Consensus       219 dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~  279 (500)
                      .|.+.-+|+.+++.+.....+........-...+++++|+.||.++-+|..+|+.+.+++-
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            4678888999988876654322111101112356888999999999999999999987753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=84.21  E-value=3.2  Score=36.19  Aligned_cols=56  Identities=14%  Similarity=0.238  Sum_probs=37.8

Q ss_pred             EEcCCCCEEEEEECC-CcEEEEECCCcccccc--ccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816          436 SWSADSRLLLSGSKD-STLKVWDIRTQKLKQD--LPGHADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       436 ~~s~~~~~l~s~s~d-~~v~iwd~~~~~~~~~--~~~h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      ++.++|++++.|+.+ ..+.+||..+......  ++... .--..+..+||+.++.|+.+
T Consensus        82 ~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~  140 (387)
T d1k3ia3          82 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSW  140 (387)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCC
T ss_pred             EEecCCcEEEeecCCCcceeEecCccCcccccccccccc-cccceeeecCCceeeecccc
Confidence            457899999998766 5899999887655321  21111 11245667899999988764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.81  E-value=14  Score=32.65  Aligned_cols=63  Identities=27%  Similarity=0.423  Sum_probs=41.1

Q ss_pred             CCcccEEEEEEcCCCCeEEEE-eC----CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe
Q 010816          106 GHTEAVLSVAFSPDGRQLASG-SG----DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS  169 (500)
Q Consensus       106 gh~~~V~~~~~sp~~~~lat~-~~----d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~  169 (500)
                      ++.-.+...++|||++++|-+ +.    -..+++.|+.+++.+-..-. ......+.|.+|++.|+-..
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~  189 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNA  189 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEE
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEE
Confidence            444445677899999998844 22    34799999999876532111 11124688999998776543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.77  E-value=11  Score=32.60  Aligned_cols=99  Identities=17%  Similarity=0.068  Sum_probs=59.1

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC
Q 010816          362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS  441 (500)
Q Consensus       362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  441 (500)
                      .|..++|+-|  .|+.. .++.+..++..+-........-..++.++                           .++|  
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~---------------------------~~~p--  135 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQL---------------------------KNVN--  135 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEE---------------------------EECS--
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccce---------------------------ecCC--
Confidence            4788999754  45544 44567777766543322222112222222                           2333  


Q ss_pred             CEEEEEECCCcEEEEECCCccccccccC-----cccCEEEEEEcCCCCEEEEEeCC
Q 010816          442 RLLLSGSKDSTLKVWDIRTQKLKQDLPG-----HADEVFAVDWSPDGEKVASGGKD  492 (500)
Q Consensus       442 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~-----h~~~V~~l~~s~dg~~l~s~~~D  492 (500)
                      ..++....++.+.++++..++......+     -.+.+.+++|++.|+.++++..+
T Consensus       136 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~  191 (381)
T d1xipa_         136 NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG  191 (381)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred             ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCC
Confidence            3566677788899999887654322111     13568899999999999887554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=80.42  E-value=18  Score=31.75  Aligned_cols=30  Identities=13%  Similarity=0.234  Sum_probs=24.0

Q ss_pred             cEEEEEECCCCCEEEEE-eCCCcEEEEeCCC
Q 010816          362 LVNHVYFSPDGQWVASA-SFDKSIKLWNGTT  391 (500)
Q Consensus       362 ~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~  391 (500)
                      ....+.++|||++++++ ..+.++.++|++.
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            35578999999988655 4589999999864