Citrus Sinensis ID: 010837
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | 2.2.26 [Sep-21-2011] | |||||||
| Q1PFQ9 | 520 | Pentatricopeptide repeat- | yes | no | 0.943 | 0.905 | 0.597 | 1e-175 | |
| Q9LW32 | 659 | Pentatricopeptide repeat- | no | no | 0.893 | 0.676 | 0.355 | 1e-80 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.849 | 0.608 | 0.337 | 2e-80 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.841 | 0.605 | 0.363 | 3e-78 | |
| Q9LUL5 | 710 | Pentatricopeptide repeat- | no | no | 0.869 | 0.611 | 0.368 | 4e-76 | |
| Q9SI53 | 630 | Pentatricopeptide repeat- | no | no | 0.927 | 0.734 | 0.337 | 2e-75 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.885 | 0.52 | 0.343 | 6e-75 | |
| Q9LIC3 | 628 | Putative pentatricopeptid | no | no | 0.859 | 0.683 | 0.330 | 1e-74 | |
| Q9SX45 | 596 | Pentatricopeptide repeat- | no | no | 0.933 | 0.781 | 0.324 | 2e-74 | |
| Q9CA56 | 895 | Pentatricopeptide repeat- | no | no | 0.847 | 0.472 | 0.343 | 3e-74 |
| >sp|Q1PFQ9|PPR62_ARATH Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 614 bits (1584), Expect = e-175, Method: Compositional matrix adjust.
Identities = 306/512 (59%), Positives = 380/512 (74%), Gaps = 41/512 (8%)
Query: 22 LVPPNQ--TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
++P N TFP K QN SLS A + ALQ +INS P G KIHA I KTG +P+
Sbjct: 13 ILPSNHYSTFPLK-QNVSSLS---PAKYIAGALQEHINSPAPKAGKKIHADIIKTGFQPD 68
Query: 80 TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS 139
NISIKLLILHLKCG L YA Q+FDELP+ TLSAYNYMI+GYLK+G V+E L LV+++
Sbjct: 69 LNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGLVKELLLLVQRMSY 128
Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
SGE+ DGYT SM+LKAS S + LPR+L R+VHA+I+KCDV+ DDVL TALVD+YVK
Sbjct: 129 SGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKS 188
Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259
GK AR VF+ M ++NV+C TSMISG+M+QGFVEDAEEIF T KDIVVYNAM+EG+S
Sbjct: 189 GKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFS 248
Query: 260 ISIETARKAL-----------------------------------EVHCQLIKNVFFEDV 284
S ETA++++ +VH Q++K+ + +
Sbjct: 249 RSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHI 308
Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
K+GS+L+DMYAKCG I+DARRVFD MQ+KNVF+WTSMIDGYGKNGNP +ALELF M+E
Sbjct: 309 KMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEF 368
Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
++PNYVTFLGALSAC H+GLVDKG EIFESM+RDYSMKPKMEHYAC+VDL+GRAG L +
Sbjct: 369 RIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNK 428
Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
A +F MPE+P+SD+WAALLSSC LH +VE+A+IAA+E+FKLNA+ RPGAY+ALSN A
Sbjct: 429 AFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYA 488
Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
+ KWD+V+++RE MK R + K G SW +
Sbjct: 489 SNDKWDNVSKIREVMKRRRISKTIGRSWTSED 520
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (769), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 162/456 (35%), Positives = 272/456 (59%), Gaps = 10/456 (2%)
Query: 44 TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
T +S P A++ + F G + H G + + +S L++++ CG L+ A ++F
Sbjct: 75 TRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVF 134
Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF--SMILKASTCCRS 161
DE+P+R + ++ MI GY NG +++SL + L+ D F SM L + S
Sbjct: 135 DEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACS 194
Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK--TSYARIVFDMMLEKNVIC 219
VP + L +H+ ++K + L+D+Y KGG+ + AR +FD +++K+ +
Sbjct: 195 RVP-AKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS 253
Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV----HCQL 275
S++S + G +A E+FR+ V+ +V +NA+ + + AL + H Q+
Sbjct: 254 YNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQV 313
Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
I+ +DV +G++++DMY KCG+++ AR+ FD M+ KNV +WT+MI GYG +G+ +AL
Sbjct: 314 IRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKAL 373
Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
ELF M + V+PNY+TF+ L+AC HAGL +G F +M+ + ++P +EHY CMVDL
Sbjct: 374 ELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDL 433
Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
LGRAG L++A + M KP+S +W++LL++CR+H +VE+A I+ +F+L++++ G
Sbjct: 434 LGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSN-CGY 492
Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
Y+ LS+ A AG+W V +R MK RG++K G S
Sbjct: 493 YMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFS 528
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (768), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/471 (33%), Positives = 264/471 (56%), Gaps = 47/471 (9%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G+++H+ I K+ + I L+ ++ KCG + A ++FDE+ R + ++N +I + +
Sbjct: 171 GVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQ 230
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-V 182
NG E+L + + ++ S PD T + ++ A C S + +G+ VH +++K D +
Sbjct: 231 NGPAVEALDVFQMMLESRVEPDEVTLASVISA---CASLSAI--KVGQEVHGRVVKNDKL 285
Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
+ D +L A VD Y K + AR +FD M +NVI TSMISG+ + A +F K
Sbjct: 286 RNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTK 345
Query: 243 TVEKDIVVYNAMIEGYSISIETARK----------------------------------A 268
E+++V +NA+I GY+ + E
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLG 405
Query: 269 LEVHCQLIKNVF------FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
++ H ++K+ F +D+ +G++L+DMY KCG +++ VF M +++ +W +MI
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465
Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
G+ +NG N+ALELF M E +P+++T +G LSACGHAG V++GR F SM RD+ +
Sbjct: 466 IGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525
Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
P +HY CMVDLLGRAG LE+A + EMP +P+S +W +LL++C++H ++ + A
Sbjct: 526 APLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAE 585
Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
++ ++ ++ G YV LSN A GKW+ V +R+ M+ GV K GCSW+
Sbjct: 586 KLLEVEPSN-SGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (749), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 159/438 (36%), Positives = 254/438 (57%), Gaps = 18/438 (4%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD--ELPQRTLSAYNYMIAGY 121
G +HA + + G + + L+ L+ KC L A +F+ LP+RT+ ++ +++ Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197
Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
+NG+ E+L + ++ +PD +L A TC + GR +HA ++K
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQD-----LKQGRSIHASVVKMG 252
Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
++ + L +L Y K G+ + A+I+FD M N+I +MISG+ G+ +A ++F
Sbjct: 253 LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312
Query: 242 KTVEKD-----IVVYNAMIEGYSI-SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
+ + KD I + +A+ + S+E AR E + ++ + +DV + SAL+DM+A
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEY---VGRSDYRDDVFISSALIDMFA 369
Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
KCG ++ AR VFD ++V W++MI GYG +G +A+ L+ M+ V PN VTFLG
Sbjct: 370 KCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLG 429
Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
L AC H+G+V +G F M D+ + P+ +HYAC++DLLGRAG L+QA + + MP +
Sbjct: 430 LLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488
Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
P VW ALLS+C+ H VE+ AA ++F ++ ++ G YV LSN AAA WD V E+
Sbjct: 489 PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN-TGHYVQLSNLYAAARLWDRVAEV 547
Query: 476 REKMKLRGVLKDTGCSWV 493
R +MK +G+ KD GCSWV
Sbjct: 548 RVRMKEKGLNKDVGCSWV 565
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 166/451 (36%), Positives = 259/451 (57%), Gaps = 17/451 (3%)
Query: 52 LQHYINSDTPFYGLKIHAHITKT-GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT 110
L I++ + +G+KI + I ++ N + KL+ L C L A ++FD++ +
Sbjct: 138 LHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSS 197
Query: 111 L---SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
L + M GY +NG ++L + ++ S P ++ S+ LKA +
Sbjct: 198 LLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKD-----L 252
Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
+GR +HAQI+K K D V+Y L+ Y++ G AR VFD M E+NV+ S+IS
Sbjct: 253 RVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVL 312
Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL-----EVHCQLIKNVFFE 282
+ V + +FRK E+ I A + +I +R A E+H Q++K+
Sbjct: 313 SKKVRVHEMFNLFRKMQEEMIGFSWATLT--TILPACSRVAALLTGKEIHAQILKSKEKP 370
Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
DV L ++L+DMY KCG+++ +RRVFD M K++ +W M++ Y NGN + + LF M
Sbjct: 371 DVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMI 430
Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
E V P+ +TF+ LS C GL + G +FE M+ ++ + P +EHYAC+VD+LGRAG +
Sbjct: 431 ESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKI 490
Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
++A+K + MP KP++ +W +LL+SCRLH +V + IAA E+F L ++ PG YV +SN
Sbjct: 491 KEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHN-PGNYVMVSNI 549
Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
A A WD+V ++RE MK RGV K+ GCSWV
Sbjct: 550 YADAKMWDNVDKIREMMKQRGVKKEAGCSWV 580
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 162/480 (33%), Positives = 271/480 (56%), Gaps = 17/480 (3%)
Query: 20 YTLVPPNQTFPPKLQNYDSL-SNPLTATSLPSA--LQHYINSDTPFYGLKIHAHITKTGV 76
+T + + P ++ DSL S+ L A S + ++ I++ G I H+ G
Sbjct: 33 FTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGH 92
Query: 77 KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136
+P + L+ +++K L A Q+FD++PQR + ++ MI+ Y K +++L L+
Sbjct: 93 RPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL 152
Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
++ RP+ YT+S +L++ S+V RM+H I+K +++D + +AL+D +
Sbjct: 153 MLRDNVRPNVYTYSSVLRSCNG-MSDV-------RMLHCGIIKEGLESDVFVRSALIDVF 204
Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
K G+ A VFD M+ + I S+I GF + A E+F++ + A +
Sbjct: 205 AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT 264
Query: 257 GY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
+ ++ H ++K + +D+ L +ALVDMY KCG ++DA RVF+ M+++
Sbjct: 265 SVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKER 322
Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
+V TW++MI G +NG +AL+LF M+ +PNY+T +G L AC HAGL++ G F
Sbjct: 323 DVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYF 382
Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
SM++ Y + P EHY CM+DLLG+AG L+ A+K + EM +P++ W LL +CR+ +
Sbjct: 383 RSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRN 442
Query: 434 VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
+ +A AA ++ L+ D G Y LSN A + KWDSV E+R +M+ RG+ K+ GCSW+
Sbjct: 443 MVLAEYAAKKVIALDPED-AGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWI 501
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (720), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 159/463 (34%), Positives = 268/463 (57%), Gaps = 21/463 (4%)
Query: 40 SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC---GAL 96
S+ T +S+ SA N G ++H+ ++G+ + S L+ ++ KC G++
Sbjct: 267 SDKFTLSSVFSACAELENLS---LGKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSV 321
Query: 97 KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE-ESLSLVRKLVSSGE-RPDGYTFSMILK 154
++FD + ++ ++ +I GY+KN + E+++L ++++ G P+ +TFS K
Sbjct: 322 DDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFK 381
Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
A N+ PR +G+ V Q K + ++ + +++ +VK + A+ F+ + E
Sbjct: 382 AC----GNLSDPR-VGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSE 436
Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV----YNAMIEGYSISIETARKALE 270
KN++ + + G E A ++ + E+++ V + +++ G + ++ + RK +
Sbjct: 437 KNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVA-NVGSIRKGEQ 495
Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
+H Q++K + + +AL+ MY+KCG ID A RVF+ M+ +NV +WTSMI G+ K+G
Sbjct: 496 IHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGF 555
Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
+ LE F M E V+PN VT++ LSAC H GLV +G F SM D+ +KPKMEHYA
Sbjct: 556 AIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYA 615
Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
CMVDLL RAG L A +F+ MP + + VW L +CR+H + E+ +AA +I +L+ N
Sbjct: 616 CMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPN 675
Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
+ P AY+ LSN A AGKW+ TE+R KMK R ++K+ GCSW+
Sbjct: 676 E-PAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWI 717
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 146/442 (33%), Positives = 255/442 (57%), Gaps = 13/442 (2%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G ++HAH+ KT P T + +LLI + KC L+ A ++ DE+P++ + ++ MI+ Y +
Sbjct: 71 GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQ 130
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
G E+L++ +++ S +P+ +TF+ +L ++C R++ LG+ +H I+K +
Sbjct: 131 TGHSSEALTVFAEMMRSDGKPNEFTFATVL--TSCIRAS---GLGLGKQIHGLIVKWNYD 185
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
+ + ++L+D Y K G+ AR +F+ + E++V+ T++I+G+ G E+A E+F +
Sbjct: 186 SHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL 245
Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
+ + V Y +++ S + + HC +++ L ++L+DMY+KCG
Sbjct: 246 HSEGMSPNYVTYASLLTALS-GLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGN 304
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALS 358
+ ARR+FD+M ++ +W +M+ GY K+G + LELF +M+ E V+P+ VT L LS
Sbjct: 305 LSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLS 364
Query: 359 ACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
C H + D G IF+ M +Y KP EHY C+VD+LGRAG +++A +F+ MP KP
Sbjct: 365 GCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPT 424
Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
+ V +LL +CR+H V++ + ++ + G YV LSN A+AG+W V +R
Sbjct: 425 AGVLGSLLGACRVHLSVDIGESVGRRLIEIEPEN-AGNYVILSNLYASAGRWADVNNVRA 483
Query: 478 KMKLRGVLKDTGCSWVGTESGL 499
M + V K+ G SW+ E L
Sbjct: 484 MMMQKAVTKEPGRSWIQHEQTL 505
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/496 (32%), Positives = 254/496 (51%), Gaps = 30/496 (6%)
Query: 8 RSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKI 67
R S + H R ++P TFPP L+ L + PF +
Sbjct: 86 RLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRD-----------------SNPF---QF 125
Query: 68 HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
HAHI K G+ + + L+ + G +A ++FD + + + MI G+++NG
Sbjct: 126 HAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSA 185
Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADD 186
E++ ++ +G + T +LKA+ V R GR VH L+ VK D
Sbjct: 186 SEAMVYFVEMKKTGVAANEMTVVSVLKAA----GKVEDVR-FGRSVHGLYLETGRVKCDV 240
Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
+ ++LVD Y K A+ VFD M +NV+ T++I+G++ + +F + ++
Sbjct: 241 FIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKS 300
Query: 247 DIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
D+ + + + VHC +IKN + G+ L+D+Y KCG +++A
Sbjct: 301 DVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEA 360
Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
VF+ + +KNV+TWT+MI+G+ +G A +LF M V PN VTF+ LSAC H
Sbjct: 361 ILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHG 420
Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
GLV++GR +F SM+ ++M+PK +HYACMVDL GR G LE+A + MP +P + VW A
Sbjct: 421 GLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGA 480
Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
L SC LH D E+ AA+ + KL + G Y L+N + + WD V +R++MK +
Sbjct: 481 LFGSCLLHKDYELGKYAASRVIKLQPS-HSGRYTLLANLYSESQNWDEVARVRKQMKDQQ 539
Query: 484 VLKDTGCSWVGTESGL 499
V+K G SW+ + L
Sbjct: 540 VVKSPGFSWIEVKGKL 555
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 149/434 (34%), Positives = 253/434 (58%), Gaps = 11/434 (2%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G ++H + K+G+ + + L L+ KCG+L+ + ++F +P + + + MI+G+ +
Sbjct: 469 GKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNE 528
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
G + E++ L +++ G PD T + +L T C S+ LPR G+ +H L+ +
Sbjct: 529 YGYLREAIGLFSEMLDDGTSPDESTLAAVL---TVCSSHPSLPR--GKEIHGYTLRAGID 583
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
L +ALV+ Y K G AR V+D + E + + +S+ISG+ G ++D +FR
Sbjct: 584 KGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDM 643
Query: 244 V----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
V D +++++ ++S E++ A +VH + K + +GS+L+ MY+K G
Sbjct: 644 VMSGFTMDSFAISSILKAAALSDESSLGA-QVHAYITKIGLCTEPSVGSSLLTMYSKFGS 702
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
IDD + F + ++ WT++I Y ++G N+AL+++ +M+E +P+ VTF+G LSA
Sbjct: 703 IDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSA 762
Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
C H GLV++ SM +DY ++P+ HY CMVD LGR+G L +A F+ M KP++
Sbjct: 763 CSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDAL 822
Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
VW LL++C++H +VE+ +AA + +L +D GAY++LSN LA G+WD V E R+ M
Sbjct: 823 VWGTLLAACKIHGEVELGKVAAKKAIELEPSD-AGAYISLSNILAEVGEWDEVEETRKLM 881
Query: 480 KLRGVLKDTGCSWV 493
K GV K+ G S V
Sbjct: 882 KGTGVQKEPGWSSV 895
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | ||||||
| 224079119 | 530 | predicted protein [Populus trichocarpa] | 0.981 | 0.924 | 0.691 | 0.0 | |
| 225443851 | 533 | PREDICTED: pentatricopeptide repeat-cont | 0.979 | 0.917 | 0.666 | 0.0 | |
| 255563078 | 530 | pentatricopeptide repeat-containing prot | 0.951 | 0.896 | 0.658 | 0.0 | |
| 449509043 | 523 | PREDICTED: pentatricopeptide repeat-cont | 0.957 | 0.913 | 0.639 | 0.0 | |
| 449462669 | 523 | PREDICTED: pentatricopeptide repeat-cont | 0.957 | 0.913 | 0.637 | 0.0 | |
| 297740478 | 598 | unnamed protein product [Vitis vinifera] | 0.901 | 0.752 | 0.650 | 0.0 | |
| 356546597 | 525 | PREDICTED: pentatricopeptide repeat-cont | 0.959 | 0.912 | 0.622 | 1e-180 | |
| 357446911 | 520 | Pentatricopeptide repeat-containing prot | 0.933 | 0.896 | 0.618 | 1e-178 | |
| 6691205 | 841 | F1K23.11 [Arabidopsis thaliana] | 0.975 | 0.579 | 0.588 | 1e-173 | |
| 42562381 | 520 | pentatricopeptide repeat-containing prot | 0.943 | 0.905 | 0.597 | 1e-173 |
| >gi|224079119|ref|XP_002305756.1| predicted protein [Populus trichocarpa] gi|222848720|gb|EEE86267.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/531 (69%), Positives = 420/531 (79%), Gaps = 41/531 (7%)
Query: 4 LSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFY 63
L+ IR +FSST N YT + P+ FPP ++Y + P T+L SALQHYINSDTPF+
Sbjct: 6 LATIRPYIFSSTCN--YTSLRPSNVFPPNQEDYITHQTP---TTLSSALQHYINSDTPFH 60
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G KIH HI KTG +PN NISIKLLILHLKC LKYA Q+FDELPQRTLSAYNYMI GYL+
Sbjct: 61 GQKIHTHILKTGFRPNINISIKLLILHLKCRCLKYAHQLFDELPQRTLSAYNYMIGGYLR 120
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
G EES+S+VR+L GERPDG+TFSMILKAST +NV LPRN G +VHAQILK DVK
Sbjct: 121 QGLFEESISMVRRLDLDGERPDGFTFSMILKASTSG-ANVMLPRNTGGLVHAQILKLDVK 179
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
ADDVLYTALVDSYVK GK YAR VFD+MLEKNVICSTSMISG+M+QGFVEDAEEIF KT
Sbjct: 180 ADDVLYTALVDSYVKSGKVGYARKVFDLMLEKNVICSTSMISGYMNQGFVEDAEEIFWKT 239
Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVH------------------------------- 272
VEKDIVV+NAMIEGYS S+ETA KALEV+
Sbjct: 240 VEKDIVVFNAMIEGYSKSVETAMKALEVYVDMQRFGLRPNGSTFASVSGACSVLAGFEIG 299
Query: 273 ----CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
CQL+K+ FF VK+GSAL+DMY+KCG+I+DARRVF++M +NVF+WTSMIDGYGKN
Sbjct: 300 QQVQCQLMKSGFFNGVKMGSALIDMYSKCGRIEDARRVFNYMPVRNVFSWTSMIDGYGKN 359
Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
G P +ALELF MQ+C ++PNYVTFLGALSACGHAGLV KGREIF+SMERDYS KP+MEH
Sbjct: 360 GEPWEALELFHRMQQCNIEPNYVTFLGALSACGHAGLVTKGREIFDSMERDYSTKPRMEH 419
Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
YACMVDLLGRAG+L+QA + V MPEKPNSDVWAALLSSC +H +VEMA +AAN++FK+N
Sbjct: 420 YACMVDLLGRAGNLQQAWELVKGMPEKPNSDVWAALLSSCNMHGNVEMARVAANKLFKIN 479
Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
A RPGAYVALSNTLAAA +WDSV+ELRE MKLRG+ KDT CSWVGTE L
Sbjct: 480 AIGRPGAYVALSNTLAAAERWDSVSELREMMKLRGISKDTACSWVGTEVDL 530
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443851|ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/531 (66%), Positives = 424/531 (79%), Gaps = 42/531 (7%)
Query: 5 SRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYG 64
S IR S+FSS+ N+ + VPPNQ+FPP D +S+P TA SL ALQHYINSD P +G
Sbjct: 7 SSIRPSIFSSSQNQRPS-VPPNQSFPPA---SDYISSP-TAISLSVALQHYINSDFPSHG 61
Query: 65 LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
KIH+HI K G +PNTN+SIKLLILHLK L+YA Q+FDE+ Q TLSAYNYMI+GYLK+
Sbjct: 62 QKIHSHILKIGFEPNTNVSIKLLILHLKSRCLRYARQLFDEMHQPTLSAYNYMISGYLKH 121
Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV-PLPRNLGRMVHAQILKCDVK 183
GQ+EE L+LV +L S E+PDG+TFSMILKA+ C + PL +LG++VHAQIL+ +V+
Sbjct: 122 GQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCASGGIFPLTYSLGKVVHAQILRSNVE 181
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
+DDVLYTALVDSYVK GK YAR VFDMML+KNV+CSTSMISG+MSQG VEDAE+IF++T
Sbjct: 182 SDDVLYTALVDSYVKNGKVGYARRVFDMMLDKNVLCSTSMISGYMSQGSVEDAEDIFKRT 241
Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVH------------------------------- 272
VEKD+VV+NAMIEGYS S+ETAR++LEV+
Sbjct: 242 VEKDVVVFNAMIEGYSKSVETARRSLEVYIDMQRLNFRPTMSTFASVIGACSVLTVFEIG 301
Query: 273 ----CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
QL+K F+ D+K+GSAL+DMY+KCG+I+DARRVFDHM +KNVF+WTSMIDGYGKN
Sbjct: 302 QQVQSQLVKMNFYNDIKMGSALIDMYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKN 361
Query: 329 GNPNQALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
GN N+ALELF MQ EC V+PNYVTFL ALSACGHAGLV KG I ESMERDY +KP+ME
Sbjct: 362 GNSNEALELFSRMQIECHVKPNYVTFLSALSACGHAGLVAKGWTILESMERDYLLKPRME 421
Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
HYACMVDLLGRAGSL+QA +FV+ MPEKP SDVWAALLSSC+LH DVEMA++AA+EIFKL
Sbjct: 422 HYACMVDLLGRAGSLQQAWEFVMRMPEKPGSDVWAALLSSCQLHGDVEMASMAAHEIFKL 481
Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
N++ RPGAYVALSN LAAAGKWDSV+E+R+ MK+RGV KDTGCSWVGT+SG
Sbjct: 482 NSDGRPGAYVALSNALAAAGKWDSVSEVRQLMKVRGVSKDTGCSWVGTDSG 532
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/521 (65%), Positives = 407/521 (78%), Gaps = 46/521 (8%)
Query: 14 STHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITK 73
++H ++PPN+ + + TA +L SALQ +INS+TPF+G KIHAHI K
Sbjct: 21 TSHAHSNPILPPNEEYLFRS----------TAAALSSALQDHINSNTPFHGQKIHAHIVK 70
Query: 74 TGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133
TG PNTN+SIKLLIL+LKCG LKYA QMFDELPQRTLSAYNY+I GYLK G V++S++L
Sbjct: 71 TGFIPNTNVSIKLLILYLKCGCLKYARQMFDELPQRTLSAYNYLIGGYLKLGLVQDSMNL 130
Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
VR+LV G+RPDG+T+SMILKAST NV L NLG +VH QILK +V+ DDVLYTALV
Sbjct: 131 VRRLVLEGQRPDGFTYSMILKASTS-GDNVTLSCNLGSVVHGQILKSEVEPDDVLYTALV 189
Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253
DSYVK G+ YAR VFDMM+EKNVICSTSMISG+M++G VEDAEEIF +TVEKD+VV+NA
Sbjct: 190 DSYVKSGRVGYARKVFDMMMEKNVICSTSMISGYMNRGSVEDAEEIFERTVEKDVVVFNA 249
Query: 254 MIEGYSISIETARKALEVHC-----------------------------------QLIKN 278
MIEGYS S++TA KALEV+ QL+K
Sbjct: 250 MIEGYSKSVQTAEKALEVYVEMQRYGFRPNLSTFASVIGACSVLAGFEIGQQVQGQLLKR 309
Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
FF +VK GSAL+DMY+KCG+I+DARR F+ M +KNVF+W+SMIDGYGKNG P++AL+LF
Sbjct: 310 EFFTNVKTGSALIDMYSKCGRIEDARRAFEQMPEKNVFSWSSMIDGYGKNGRPDEALQLF 369
Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
MQ+CC++PNYVTFLGALSACGHAGLV KGREIFESMER+YS+KP MEHYACMVDLLGR
Sbjct: 370 HKMQDCCIEPNYVTFLGALSACGHAGLVSKGREIFESMEREYSLKPGMEHYACMVDLLGR 429
Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
AGSL A +FV+ MPEKP+SDVWAALLS+C LH +VEMA++AANE+FKLNA R GAYVA
Sbjct: 430 AGSLNLAWEFVMGMPEKPSSDVWAALLSACNLHGNVEMASVAANELFKLNAEGRSGAYVA 489
Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
LSNTLAAAGKWD VTE+RE MK RG+LKDTG SWVGTES L
Sbjct: 490 LSNTLAAAGKWDGVTEVREIMKSRGILKDTGSSWVGTESVL 530
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449509043|ref|XP_004163477.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/522 (63%), Positives = 404/522 (77%), Gaps = 44/522 (8%)
Query: 13 SSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHIT 72
S TH +L+ +F P + ++ T+TSL SALQHYINSD P +GLKIHAHI
Sbjct: 8 SVTHRVFSSLIDYVPSFAP------TQTSNQTSTSLSSALQHYINSDDPSHGLKIHAHIL 61
Query: 73 KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS 132
KTG PNTNISIKLLILHLKC +LK+A Q FD LPQ+TLSAYNYMI GY+K G+V ESL
Sbjct: 62 KTGFIPNTNISIKLLILHLKCKSLKFARQAFDALPQKTLSAYNYMIGGYMKMGEVPESLP 121
Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
LVR+L+ SGE+PDG+TFSM+LKAST R + +PR+LGR+VHAQILK +V DDVLYTAL
Sbjct: 122 LVRELICSGEKPDGFTFSMLLKASTLAREDF-VPRSLGRVVHAQILKSNVSPDDVLYTAL 180
Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
VDSY+K G AR+VFD+ML+KNVICSTSMISG+M++G V+DAEEIFRKTVEKDIVV+N
Sbjct: 181 VDSYIKNGDVYIARLVFDLMLKKNVICSTSMISGYMNRGLVKDAEEIFRKTVEKDIVVFN 240
Query: 253 AMIEGYSISIETARKALE-----------------------------------VHCQLIK 277
AMIEGYS + E A+K+LE + CQL+K
Sbjct: 241 AMIEGYSKTHEHAKKSLEFYIDMQRLCFSPNISTFSSVIGACSVLAAFEAGQQIQCQLMK 300
Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
FF D+++GSAL+DMY+KCG+ DDAR+VFD MQ++NVF+WTSMIDGYGKNG P++ALEL
Sbjct: 301 TKFFTDIRMGSALIDMYSKCGRTDDARQVFDQMQERNVFSWTSMIDGYGKNGYPSEALEL 360
Query: 338 FCMMQE-CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
FC+MQE +QPN+VTFL ALSAC H GLV++G EIFESMERDYS+KPKMEHYACMVDLL
Sbjct: 361 FCIMQEKHQIQPNFVTFLSALSACAHGGLVEEGWEIFESMERDYSLKPKMEHYACMVDLL 420
Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
GRAGSL QA +FV++MPE PNSDVWAALLSS +LH +VE+A +AA+E+FKLNA+ RPGAY
Sbjct: 421 GRAGSLLQAWEFVMQMPETPNSDVWAALLSSAKLHGNVEIACMAADELFKLNADSRPGAY 480
Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
VALSNT A AGKW++V+ELRE MK++ V K G SWVG G
Sbjct: 481 VALSNTFAEAGKWNNVSELREIMKIKRV-KCKGSSWVGAGDG 521
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462669|ref|XP_004149063.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/522 (63%), Positives = 403/522 (77%), Gaps = 44/522 (8%)
Query: 13 SSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHIT 72
S TH +L+ +F P + ++ T+TSL SALQHYINSD P +GLKIHAHI
Sbjct: 8 SVTHRVFSSLIDYVPSFAP------TQTSNQTSTSLSSALQHYINSDDPSHGLKIHAHIL 61
Query: 73 KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS 132
KTG PNTNISIKLLILHLKC +LK+A Q FD LPQ+TLSAYNYMI GY+K G+V ESL
Sbjct: 62 KTGFIPNTNISIKLLILHLKCKSLKFARQAFDALPQKTLSAYNYMIGGYMKMGEVPESLP 121
Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
LVR+L+ SGE+PDG+TFSM+LKAST R + +PR+LGR+VHAQILK +V DDVLYTAL
Sbjct: 122 LVRELICSGEKPDGFTFSMLLKASTLAREDF-VPRSLGRVVHAQILKSNVSPDDVLYTAL 180
Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
VDSY+K G AR+VFD+ML+KNVICSTSMISG+M++G V+DAEEIFRKTVEKDIVV+N
Sbjct: 181 VDSYIKNGDVYIARMVFDLMLKKNVICSTSMISGYMNRGLVKDAEEIFRKTVEKDIVVFN 240
Query: 253 AMIEGYSISIETARKALE-----------------------------------VHCQLIK 277
AMIEGYS + E A+K+LE + CQL+K
Sbjct: 241 AMIEGYSKTHEHAKKSLEFYIDMQRLCFSPNISTFSSVIGACSVLAAFEAGQQIQCQLMK 300
Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
FF D+++GSAL+DMY+KCG+ DDAR+VFD MQ++NVF+WTSMIDGYGKNG P++ALEL
Sbjct: 301 TKFFTDIRMGSALIDMYSKCGRTDDARQVFDQMQERNVFSWTSMIDGYGKNGYPSEALEL 360
Query: 338 FCMMQE-CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
FC+MQE +QPN+VTFL ALSAC H GLV++G EIFESMERDYS+KPKMEHYACMVDLL
Sbjct: 361 FCIMQEKHQIQPNFVTFLSALSACAHGGLVEEGWEIFESMERDYSLKPKMEHYACMVDLL 420
Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
GRAGSL QA +F ++MPE PNSDVWAALLSS +LH +VE+A +AA+E+FKLNA+ RPGAY
Sbjct: 421 GRAGSLLQAWEFAMQMPETPNSDVWAALLSSAKLHGNVEIACMAADELFKLNADSRPGAY 480
Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
VALSNT A AGKW++V+ELRE MK++ V K G SWVG G
Sbjct: 481 VALSNTFAEAGKWNNVSELREIMKIKRV-KCKGSSWVGAGDG 521
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740478|emb|CBI30660.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/492 (65%), Positives = 386/492 (78%), Gaps = 42/492 (8%)
Query: 5 SRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYG 64
S IR S+FSS+ N+ + VPPNQ+FPP D +S+P TA SL ALQHYINSD P +G
Sbjct: 7 SSIRPSIFSSSQNQRPS-VPPNQSFPPA---SDYISSP-TAISLSVALQHYINSDFPSHG 61
Query: 65 LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
KIH+HI K G +PNTN+SIKLLILHLK L+YA Q+FDE+ Q TLSAYNYMI+GYLK+
Sbjct: 62 QKIHSHILKIGFEPNTNVSIKLLILHLKSRCLRYARQLFDEMHQPTLSAYNYMISGYLKH 121
Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV-PLPRNLGRMVHAQILKCDVK 183
GQ+EE L+LV +L S E+PDG+TFSMILKA+ C + PL +LG++VHAQIL+ +V+
Sbjct: 122 GQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCASGGIFPLTYSLGKVVHAQILRSNVE 181
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
+DDVLYTALVDSYVK GK YAR VFDMML+KNV+CSTSMISG+MSQG VEDAE+IF++T
Sbjct: 182 SDDVLYTALVDSYVKNGKVGYARRVFDMMLDKNVLCSTSMISGYMSQGSVEDAEDIFKRT 241
Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHC------------------------------ 273
VEKD+VV+NAMIEGYS S+ETAR++LEV+
Sbjct: 242 VEKDVVVFNAMIEGYSKSVETARRSLEVYIDMQRLNFRPTMSTFASVIGACSVLTVFEIG 301
Query: 274 -----QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
QL+K F+ D+K+GSAL+DMY+KCG+I+DARRVFDHM +KNVF+WTSMIDGYGKN
Sbjct: 302 QQVQSQLVKMNFYNDIKMGSALIDMYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKN 361
Query: 329 GNPNQALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
GN N+ALELF MQ EC V+PNYVTFL ALSACGHAGLV KG I ESMERDY +KP+ME
Sbjct: 362 GNSNEALELFSRMQIECHVKPNYVTFLSALSACGHAGLVAKGWTILESMERDYLLKPRME 421
Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
HYACMVDLLGRAGSL+QA +FV+ MPEKP SDVWAALLSSC+LH DVEMA++AA+EIFKL
Sbjct: 422 HYACMVDLLGRAGSLQQAWEFVMRMPEKPGSDVWAALLSSCQLHGDVEMASMAAHEIFKL 481
Query: 448 NANDRPGAYVAL 459
N++ RPGAY +
Sbjct: 482 NSDGRPGAYALI 493
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546597|ref|XP_003541711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 325/522 (62%), Positives = 393/522 (75%), Gaps = 43/522 (8%)
Query: 12 FSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHI 71
F S+ +L+ +Q FP QN+D + +TS +ALQ YINS+TP +G KIH+ I
Sbjct: 9 FFSSRGFCTSLISHHQPFP---QNHDFIP---PSTSFSNALQLYINSETPSHGQKIHSSI 62
Query: 72 TKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESL 131
K+G PNTNISIKLLIL+LKC L+YA Q+FD+L RTLSAYNYMI+GYLK QVEESL
Sbjct: 63 LKSGFVPNTNISIKLLILYLKCNCLRYARQVFDDLRDRTLSAYNYMISGYLKQDQVEESL 122
Query: 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTA 191
LV +L+ SGE+PDG+TFSMILKAST NV L +LGRMVH QILK D++ D+VL TA
Sbjct: 123 GLVHRLLVSGEKPDGFTFSMILKASTS-GCNVALLGDLGRMVHTQILKSDIERDEVLCTA 181
Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVY 251
L+DSYVK G+ +YAR VFD+M EKNV+CSTS+ISG+M+QG +EDAE IF KT++KD+V +
Sbjct: 182 LIDSYVKNGRVAYARTVFDVMSEKNVVCSTSLISGYMNQGSIEDAECIFLKTMDKDVVAF 241
Query: 252 NAMIEGYSISIETARKALEVHC-----------------------------------QLI 276
NAMIEGYS + E A ++LEV+ QL+
Sbjct: 242 NAMIEGYSKTSEYAMRSLEVYIDMQRLNFRPNVSTFASVIGACSMLAAFEIGQQVQSQLM 301
Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
K F+ D+KLGSAL+DMYAKCG++ DARRVFD M +KNVF+WTSMIDGYGKNG P++AL+
Sbjct: 302 KTPFYADIKLGSALIDMYAKCGRVVDARRVFDCMLKKNVFSWTSMIDGYGKNGFPDEALQ 361
Query: 337 LFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
LF +Q E + PNYVTFL ALSAC HAGLVDKG EIF+SME +Y +KP MEHYACMVDL
Sbjct: 362 LFGKIQTEYGIVPNYVTFLSALSACAHAGLVDKGWEIFQSMENEYLVKPGMEHYACMVDL 421
Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
LGRAG L QA +FV+ MPE+PN DVWAALLSSCRLH ++EMA +AANE+FKLNA RPGA
Sbjct: 422 LGRAGMLNQAWEFVMRMPERPNLDVWAALLSSCRLHGNLEMAKLAANELFKLNATGRPGA 481
Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
YVALSNTLAAAGKW+SVTELRE MK RG+ KDTG SWVG +S
Sbjct: 482 YVALSNTLAAAGKWESVTELREIMKERGISKDTGRSWVGADS 523
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357446911|ref|XP_003593731.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355482779|gb|AES63982.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 315/509 (61%), Positives = 383/509 (75%), Gaps = 43/509 (8%)
Query: 21 TLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNT 80
+L+ P+Q F QN+D + +T + LQHYINS TP +G KIH+HI KTG PNT
Sbjct: 19 SLLSPHQPFS---QNHDFIP---PSTFFSNTLQHYINSQTPSHGQKIHSHILKTGFVPNT 72
Query: 81 NISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS 140
NISIKLLIL++K +L+YA Q+FD+L RTLSAYNYMI GYLKNGQV+ESL L +L S
Sbjct: 73 NISIKLLILYIKSHSLRYARQVFDDLHDRTLSAYNYMIGGYLKNGQVDESLDLFHQLSVS 132
Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
GE+PDG+TFSMILKAST SN + +LGRMVHAQILK DV+ DDVL TAL+DSYVK G
Sbjct: 133 GEKPDGFTFSMILKASTNRVSN-GMVGDLGRMVHAQILKFDVEKDDVLCTALIDSYVKNG 191
Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260
+ Y R VFD+M EKNVI STS+ISG+M++GF +DAE IFRKT++KD+VV+NAMIEGYS
Sbjct: 192 RVGYGRTVFDVMSEKNVISSTSLISGYMNKGFFDDAEYIFRKTLDKDVVVFNAMIEGYSK 251
Query: 261 SIETARKALEVH-----------------------------------CQLIKNVFFEDVK 285
E A ++LEV+ QL+K FF +K
Sbjct: 252 VSEYAMRSLEVYIDMQRLNFRPNLSTFASIIGACSVLAAFEIGEQVQAQLMKTPFFAVIK 311
Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-EC 344
LGSAL+DMY+KCG++ DA+RVFDHM +KNVF+WTSMIDGYGKNG P++ALELF MQ E
Sbjct: 312 LGSALIDMYSKCGRVIDAQRVFDHMLEKNVFSWTSMIDGYGKNGFPDEALELFKKMQIEY 371
Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
+ PN+VTFL AL+AC HAGLV++G EIF+SME +Y +KP+MEHYACMVDLLGRAG L Q
Sbjct: 372 SITPNFVTFLSALTACAHAGLVERGWEIFQSMESEYKLKPRMEHYACMVDLLGRAGWLNQ 431
Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
A +FV MPE+PNSDVW ALLSSCR+H ++EMA +AANE+FKLNA RPGAYVALSNTLA
Sbjct: 432 AWEFVTRMPERPNSDVWLALLSSCRIHGNIEMAKLAANELFKLNAYGRPGAYVALSNTLA 491
Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCSWV 493
AGKWD+V+ELRE MK +G+ KDT CSWV
Sbjct: 492 DAGKWDNVSELREVMKEKGISKDTACSWV 520
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6691205|gb|AAF24543.1|AC007508_6 F1K23.11 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 313/532 (58%), Positives = 390/532 (73%), Gaps = 45/532 (8%)
Query: 2 PNLSRIRSSVFSSTHNRHYTLVPPNQ--TFPPKLQNYDSLSNPLTATSLPSALQHYINSD 59
PN+S +R F+S R ++P N TFP K QN SLS A + ALQ +INS
Sbjct: 318 PNVS-MRIFRFTSISPR---ILPSNHYSTFPLK-QNVSSLS---PAKYIAGALQEHINSP 369
Query: 60 TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
P G KIHA I KTG +P+ NISIKLLILHLKCG L YA Q+FDELP+ TLSAYNYMI+
Sbjct: 370 APKAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMIS 429
Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
GYLK+G V+E L LV+++ SGE+ DGYT SM+LKAS S + LPR+L R+VHA+I+K
Sbjct: 430 GYLKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIK 489
Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
CDV+ DDVL TALVD+YVK GK AR VF+ M ++NV+C TSMISG+M+QGFVEDAEEI
Sbjct: 490 CDVELDDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEI 549
Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKAL------------------------------ 269
F T KDIVVYNAM+EG+S S ETA++++
Sbjct: 550 FNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTS 609
Query: 270 -----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
+VH Q++K+ + +K+GS+L+DMYAKCG I+DARRVFD MQ+KNVF+WTSMIDG
Sbjct: 610 HEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDG 669
Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
YGKNGNP +ALELF M+E ++PNYVTFLGALSAC H+GLVDKG EIFESM+RDYSMKP
Sbjct: 670 YGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRDYSMKP 729
Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
KMEHYAC+VDL+GRAG L +A +F MPE+P+SD+WAALLSSC LH +VE+A+IAA+E+
Sbjct: 730 KMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASEL 789
Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
FKLNA+ RPGAY+ALSN A+ KWD+V+++RE MK R + K G SW +
Sbjct: 790 FKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRSWTSED 841
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42562381|ref|NP_174190.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806502|sp|Q1PFQ9.2|PPR62_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g28690, mitochondrial; Flags: Precursor gi|332192893|gb|AEE31014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 306/512 (59%), Positives = 380/512 (74%), Gaps = 41/512 (8%)
Query: 22 LVPPNQ--TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
++P N TFP K QN SLS A + ALQ +INS P G KIHA I KTG +P+
Sbjct: 13 ILPSNHYSTFPLK-QNVSSLS---PAKYIAGALQEHINSPAPKAGKKIHADIIKTGFQPD 68
Query: 80 TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS 139
NISIKLLILHLKCG L YA Q+FDELP+ TLSAYNYMI+GYLK+G V+E L LV+++
Sbjct: 69 LNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGLVKELLLLVQRMSY 128
Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
SGE+ DGYT SM+LKAS S + LPR+L R+VHA+I+KCDV+ DDVL TALVD+YVK
Sbjct: 129 SGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKS 188
Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259
GK AR VF+ M ++NV+C TSMISG+M+QGFVEDAEEIF T KDIVVYNAM+EG+S
Sbjct: 189 GKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFS 248
Query: 260 ISIETARKAL-----------------------------------EVHCQLIKNVFFEDV 284
S ETA++++ +VH Q++K+ + +
Sbjct: 249 RSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHI 308
Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
K+GS+L+DMYAKCG I+DARRVFD MQ+KNVF+WTSMIDGYGKNGNP +ALELF M+E
Sbjct: 309 KMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEF 368
Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
++PNYVTFLGALSAC H+GLVDKG EIFESM+RDYSMKPKMEHYAC+VDL+GRAG L +
Sbjct: 369 RIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNK 428
Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
A +F MPE+P+SD+WAALLSSC LH +VE+A+IAA+E+FKLNA+ RPGAY+ALSN A
Sbjct: 429 AFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYA 488
Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
+ KWD+V+++RE MK R + K G SW +
Sbjct: 489 SNDKWDNVSKIREVMKRRRISKTIGRSWTSED 520
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | ||||||
| TAIR|locus:2018668 | 520 | AT1G28690 [Arabidopsis thalian | 0.653 | 0.626 | 0.507 | 1.8e-87 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.891 | 0.675 | 0.354 | 9.3e-75 | |
| TAIR|locus:2090990 | 710 | AT3G14330 [Arabidopsis thalian | 0.893 | 0.628 | 0.366 | 4.6e-73 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.885 | 0.52 | 0.345 | 1.4e-71 | |
| TAIR|locus:2091546 | 628 | AT3G13770 [Arabidopsis thalian | 0.859 | 0.683 | 0.330 | 9.9e-71 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.927 | 0.734 | 0.335 | 1.6e-70 | |
| TAIR|locus:2019130 | 895 | OTP87 "organelle transcript pr | 0.847 | 0.472 | 0.343 | 3.3e-70 | |
| TAIR|locus:2183886 | 752 | RARE1 "REQUIRED FOR ACCD RNA E | 0.879 | 0.583 | 0.336 | 1.1e-69 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.849 | 0.476 | 0.353 | 5.3e-69 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.847 | 0.522 | 0.354 | 6.3e-69 |
| TAIR|locus:2018668 AT1G28690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 169/333 (50%), Positives = 239/333 (71%)
Query: 170 GRMVHAQILKCDVKADDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
G++ A+ + +K ++V+ T+++ Y+ G A +F+ K+++ +M+ GF
Sbjct: 189 GKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFS 248
Query: 229 SQG-FVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
G + + +++ R +I + ++I S+ + + +VH Q++K+ +
Sbjct: 249 RSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSV-LTSHEVGQQVHAQIMKSGVYTH 307
Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
+K+GS+L+DMYAKCG I+DARRVFD MQ+KNVF+WTSMIDGYGKNGNP +ALELF M+E
Sbjct: 308 IKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKE 367
Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
++PNYVTFLGALSAC H+GLVDKG EIFESM+RDYSMKPKMEHYAC+VDL+GRAG L
Sbjct: 368 FRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLN 427
Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463
+A +F MPE+P+SD+WAALLSSC LH +VE+A+IAA+E+FKLNA+ RPGAY+ALSN
Sbjct: 428 KAFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVY 487
Query: 464 AAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
A+ KWD+V+++RE MK R + K G SW +
Sbjct: 488 ASNDKWDNVSKIREVMKRRRISKTIGRSWTSED 520
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 162/457 (35%), Positives = 274/457 (59%)
Query: 44 TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
T +S P A++ + F G + H G + + +S L++++ CG L+ A ++F
Sbjct: 75 TRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVF 134
Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF--SM-ILKASTCCR 160
DE+P+R + ++ MI GY NG +++SL + L+ D F SM ++ + C
Sbjct: 135 DEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISAC- 193
Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK--TSYARIVFDMMLEKNVI 218
S VP + L +H+ ++K + L+D+Y KGG+ + AR +FD +++K+ +
Sbjct: 194 SRVPA-KGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRV 252
Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV----HCQ 274
S++S + G +A E+FR+ V+ +V +NA+ + + AL + H Q
Sbjct: 253 SYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQ 312
Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
+I+ +DV +G++++DMY KCG+++ AR+ FD M+ KNV +WT+MI GYG +G+ +A
Sbjct: 313 VIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKA 372
Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
LELF M + V+PNY+TF+ L+AC HAGL +G F +M+ + ++P +EHY CMVD
Sbjct: 373 LELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVD 432
Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
LLGRAG L++A + M KP+S +W++LL++CR+H +VE+A I+ +F+L++++ G
Sbjct: 433 LLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNC-G 491
Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
Y+ LS+ A AG+W V +R MK RG++K G S
Sbjct: 492 YYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFS 528
|
|
| TAIR|locus:2090990 AT3G14330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 170/464 (36%), Positives = 263/464 (56%)
Query: 38 SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKT-GVKPNTNISIKLLILHLKCGAL 96
+LS P T L L I++ + +G+KI + I ++ N + KL+ L C L
Sbjct: 127 NLSTPEAYTDL---LHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRL 183
Query: 97 KYAGQMFDELPQRTL---SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
A ++FD++ +L + M GY +NG ++L + ++ S P ++ S+ L
Sbjct: 184 DLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVAL 243
Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
KA C L +GR +HAQI+K K D V+Y L+ Y++ G AR VFD M
Sbjct: 244 KA---CVDLKDL--RVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMS 298
Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKAL 269
E+NV+ S+IS + V + +FRK E+ I ++ S +
Sbjct: 299 ERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACS-RVAALLTGK 357
Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
E+H Q++K+ DV L ++L+DMY KCG+++ +RRVFD M K++ +W M++ Y NG
Sbjct: 358 EIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAING 417
Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
N + + LF M E V P+ +TF+ LS C GL + G +FE M+ ++ + P +EHY
Sbjct: 418 NIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHY 477
Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
AC+VD+LGRAG +++A+K + MP KP++ +W +LL+SCRLH +V + IAA E+F L
Sbjct: 478 ACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEP 537
Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
++ PG YV +SN A A WD+V ++RE MK RGV K+ GCSWV
Sbjct: 538 HN-PGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWV 580
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 160/463 (34%), Positives = 269/463 (58%)
Query: 40 SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC---GAL 96
S+ T +S+ SA N G ++H+ ++G+ + S L+ ++ KC G++
Sbjct: 267 SDKFTLSSVFSACAELENLSL---GKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSV 321
Query: 97 KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE-ESLSLVRKLVSSGE-RPDGYTFSMILK 154
++FD + ++ ++ +I GY+KN + E+++L ++++ G P+ +TFS K
Sbjct: 322 DDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFK 381
Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
A C N+ PR +G+ V Q K + ++ + +++ +VK + A+ F+ + E
Sbjct: 382 A---C-GNLSDPR-VGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSE 436
Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV----YNAMIEGYSISIETARKALE 270
KN++ + + G E A ++ + E+++ V + +++ G + ++ + RK +
Sbjct: 437 KNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVA-NVGSIRKGEQ 495
Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
+H Q++K + + +AL+ MY+KCG ID A RVF+ M+ +NV +WTSMI G+ K+G
Sbjct: 496 IHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGF 555
Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
+ LE F M E V+PN VT++ LSAC H GLV +G F SM D+ +KPKMEHYA
Sbjct: 556 AIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYA 615
Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
CMVDLL RAG L A +F+ MP + + VW L +CR+H + E+ +AA +I +L+ N
Sbjct: 616 CMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPN 675
Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
+ P AY+ LSN A AGKW+ TE+R KMK R ++K+ GCSW+
Sbjct: 676 E-PAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWI 717
|
|
| TAIR|locus:2091546 AT3G13770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 146/442 (33%), Positives = 255/442 (57%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G ++HAH+ KT P T + +LLI + KC L+ A ++ DE+P++ + ++ MI+ Y +
Sbjct: 71 GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQ 130
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
G E+L++ +++ S +P+ +TF+ +L ++C R++ LG+ +H I+K +
Sbjct: 131 TGHSSEALTVFAEMMRSDGKPNEFTFATVL--TSCIRAS---GLGLGKQIHGLIVKWNYD 185
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
+ + ++L+D Y K G+ AR +F+ + E++V+ T++I+G+ G E+A E+F +
Sbjct: 186 SHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL 245
Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
+ + V Y +++ S + + HC +++ L ++L+DMY+KCG
Sbjct: 246 HSEGMSPNYVTYASLLTALS-GLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGN 304
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALS 358
+ ARR+FD+M ++ +W +M+ GY K+G + LELF +M+ E V+P+ VT L LS
Sbjct: 305 LSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLS 364
Query: 359 ACGHAGLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
C H + D G IF+ M +Y KP EHY C+VD+LGRAG +++A +F+ MP KP
Sbjct: 365 GCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPT 424
Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
+ V +LL +CR+H V++ + ++ + G YV LSN A+AG+W V +R
Sbjct: 425 AGVLGSLLGACRVHLSVDIGESVGRRLIEIEP-ENAGNYVILSNLYASAGRWADVNNVRA 483
Query: 478 KMKLRGVLKDTGCSWVGTESGL 499
M + V K+ G SW+ E L
Sbjct: 484 MMMQKAVTKEPGRSWIQHEQTL 505
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 161/480 (33%), Positives = 270/480 (56%)
Query: 20 YTLVPPNQTFPPKLQNYDSL-SNPLTATSLPSA--LQHYINSDTPFYGLKIHAHITKTGV 76
+T + + P ++ DSL S+ L A S + ++ I++ G I H+ G
Sbjct: 33 FTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGH 92
Query: 77 KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136
+P + L+ +++K L A Q+FD++PQR + ++ MI+ Y K +++L L+
Sbjct: 93 RPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL 152
Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
++ RP+ YT+S +L++ C + RM+H I+K +++D + +AL+D +
Sbjct: 153 MLRDNVRPNVYTYSSVLRS---CNGMSDV-----RMLHCGIIKEGLESDVFVRSALIDVF 204
Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
K G+ A VFD M+ + I S+I GF + A E+F++ + A +
Sbjct: 205 AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT 264
Query: 257 GY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
+ ++ H ++K + +D+ L +ALVDMY KCG ++DA RVF+ M+++
Sbjct: 265 SVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKER 322
Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
+V TW++MI G +NG +AL+LF M+ +PNY+T +G L AC HAGL++ G F
Sbjct: 323 DVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYF 382
Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
SM++ Y + P EHY CM+DLLG+AG L+ A+K + EM +P++ W LL +CR+ +
Sbjct: 383 RSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRN 442
Query: 434 VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
+ +A AA ++ L+ D G Y LSN A + KWDSV E+R +M+ RG+ K+ GCSW+
Sbjct: 443 MVLAEYAAKKVIALDPEDA-GTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWI 501
|
|
| TAIR|locus:2019130 OTP87 "organelle transcript processing 87" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 149/434 (34%), Positives = 253/434 (58%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G ++H + K+G+ + + L L+ KCG+L+ + ++F +P + + + MI+G+ +
Sbjct: 469 GKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNE 528
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
G + E++ L +++ G PD T + +L T C S+ LPR G+ +H L+ +
Sbjct: 529 YGYLREAIGLFSEMLDDGTSPDESTLAAVL---TVCSSHPSLPR--GKEIHGYTLRAGID 583
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
L +ALV+ Y K G AR V+D + E + + +S+ISG+ G ++D +FR
Sbjct: 584 KGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDM 643
Query: 244 VEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
V D +++++ ++S E++ A +VH + K + +GS+L+ MY+K G
Sbjct: 644 VMSGFTMDSFAISSILKAAALSDESSLGA-QVHAYITKIGLCTEPSVGSSLLTMYSKFGS 702
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
IDD + F + ++ WT++I Y ++G N+AL+++ +M+E +P+ VTF+G LSA
Sbjct: 703 IDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSA 762
Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
C H GLV++ SM +DY ++P+ HY CMVD LGR+G L +A F+ M KP++
Sbjct: 763 CSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDAL 822
Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
VW LL++C++H +VE+ +AA + +L +D GAY++LSN LA G+WD V E R+ M
Sbjct: 823 VWGTLLAACKIHGEVELGKVAAKKAIELEPSDA-GAYISLSNILAEVGEWDEVEETRKLM 881
Query: 480 KLRGVLKDTGCSWV 493
K GV K+ G S V
Sbjct: 882 KGTGVQKEPGWSSV 895
|
|
| TAIR|locus:2183886 RARE1 "REQUIRED FOR ACCD RNA EDITING 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 152/452 (33%), Positives = 250/452 (55%)
Query: 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
L+ +N +G +IHAH+ + G+ NT+I ++ +++KCG L A ++FD++ +
Sbjct: 191 LKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKP 250
Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
A ++ GY + G+ ++L L LV+ G D + FS++LKA C S L NLG+
Sbjct: 251 VACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKA---CASLEEL--NLGK 305
Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
+HA + K ++++ + T LVD Y+K A F + E N + +++ISG+
Sbjct: 306 QIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMS 365
Query: 232 FVEDAEEIFRKTVEKDIVV-----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
E+A + F+ K+ + Y ++ + S+ + +VH IK
Sbjct: 366 QFEEAVKTFKSLRSKNASILNSFTYTSIFQACSV-LADCNIGGQVHADAIKRSLIGSQYG 424
Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
SAL+ MY+KCG +DDA VF+ M ++ WT+ I G+ GN ++AL LF M C +
Sbjct: 425 ESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGM 484
Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
+PN VTF+ L+AC HAGLV++G+ ++M R Y++ P ++HY CM+D+ R+G L++AL
Sbjct: 485 KPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEAL 544
Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
KF+ MP +P++ W LS C H ++E+ IA E+ +L+ D G YV N A
Sbjct: 545 KFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAG-YVLPFNLYTWA 603
Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
GKW+ E+ + M R + K+ CSW+ E G
Sbjct: 604 GKWEEAAEMMKLMNERMLKKELSCSWI-QEKG 634
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 679 (244.1 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 158/447 (35%), Positives = 252/447 (56%)
Query: 64 GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
G ++HA+ K G + N+ + L+ ++ C + ++FD + R + +N MIAGY
Sbjct: 321 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 380
Query: 123 KNGQVEESLSL-VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
+N +E+L L + S+G + T + ++ A C RS R +H ++K
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA--CVRSGA-FSRK--EAIHGFVVKRG 435
Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
+ D + L+D Y + GK A +F M +++++ +MI+G++ EDA +
Sbjct: 436 LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLH 495
Query: 242 K--TVEKDIV--VYNAMIEGYSISIET------ARKAL----EVHCQLIKNVFFEDVKLG 287
K +E+ + ++ SI++ T A AL E+H IKN DV +G
Sbjct: 496 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG 555
Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
SALVDMYAKCG + +R+VFD + QKNV TW +I YG +GN +A++L MM V+
Sbjct: 556 SALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVK 615
Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
PN VTF+ +AC H+G+VD+G IF M+ DY ++P +HYAC+VDLLGRAG +++A +
Sbjct: 616 PNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQ 675
Query: 408 FVLEMPEKPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
+ MP N + W++LL + R+H+++E+ IAA + +L N YV L+N ++A
Sbjct: 676 LMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVA-SHYVLLANIYSSA 734
Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
G WD TE+R MK +GV K+ GCSW+
Sbjct: 735 GLWDKATEVRRNMKEQGVRKEPGCSWI 761
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 154/434 (35%), Positives = 250/434 (57%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G +IH + ++G NIS L+ ++ KCG+L+ A Q+FD + +R + ++N MI Y++
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ 314
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
N +E++ + +K++ G +P T ++ A C L R GR +H ++ +
Sbjct: 315 NENPKEAMLIFQKMLDEGVKP---TDVSVMGALHACADLGDLER--GRFIHKLSVELGLD 369
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-- 241
+ + +L+ Y K + A +F + + ++ +MI GF G DA F
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM 429
Query: 242 --KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
+TV+ D Y ++I + + A +H ++++ ++V + +ALVDMYAKCG
Sbjct: 430 RSRTVKPDTFTYVSVITAIA-ELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGA 488
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
I AR +FD M +++V TW +MIDGYG +G ALELF MQ+ ++PN VTFL +SA
Sbjct: 489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISA 548
Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
C H+GLV+ G + F M+ +YS++ M+HY MVDLLGRAG L +A F+++MP KP +
Sbjct: 549 CSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN 608
Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
V+ A+L +C++H +V A AA +F+LN +D G +V L+N AA W+ V ++R M
Sbjct: 609 VYGAMLGACQIHKNVNFAEKAAERLFELNPDDG-GYHVLLANIYRAASMWEKVGQVRVSM 667
Query: 480 KLRGVLKDTGCSWV 493
+G+ K GCS V
Sbjct: 668 LRQGLRKTPGCSMV 681
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q1PFQ9 | PPR62_ARATH | No assigned EC number | 0.5976 | 0.9438 | 0.9057 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 499 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-96 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-82 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-49 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-41 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-29 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-28 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 304 bits (781), Expect = 5e-96
Identities = 151/434 (34%), Positives = 256/434 (58%), Gaps = 15/434 (3%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
++ H+ +G +P+ + ++L++H+KCG L A ++FDE+P+R L+++ +I G + G
Sbjct: 144 AVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG 203
Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
E+ +L R++ G + TF ++L+AS S G+ +H +LK V D
Sbjct: 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS-----ARAGQQLHCCVLKTGVVGD 258
Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----R 241
+ AL+D Y K G AR VFD M EK + SM++G+ G+ E+A ++
Sbjct: 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318
Query: 242 KTVEKDIVVYNAMIEGYS--ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
V D ++ MI +S +E A++A H LI+ F D+ +ALVD+Y+K G+
Sbjct: 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQA---HAGLIRTGFPLDIVANTALVDLYSKWGR 375
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
++DAR VFD M +KN+ +W ++I GYG +G +A+E+F M V PN+VTFL LSA
Sbjct: 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
C ++GL ++G EIF+SM ++ +KP+ HYACM++LLGR G L++A + P KP +
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN 495
Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
+WAALL++CR+H ++E+ +AA +++ + ++ YV L N ++G+ ++ E +
Sbjct: 496 MWAALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETL 554
Query: 480 KLRGVLKDTGCSWV 493
K +G+ C+W+
Sbjct: 555 KRKGLSMHPACTWI 568
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 271 bits (695), Expect = 4e-82
Identities = 152/456 (33%), Positives = 246/456 (53%), Gaps = 14/456 (3%)
Query: 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
+ +T TS+ SA + + D G ++H ++ KTG + ++ L+ ++L G+ A
Sbjct: 287 DLMTITSVISACE--LLGDERL-GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
++F + + ++ MI+GY KNG +++L + PD T + +L A C
Sbjct: 344 KVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403
Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
++G +H + + + V+ AL++ Y K A VF + EK+VI
Sbjct: 404 D-----LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISW 458
Query: 221 TSMISGFMSQGFVEDAEEIFRK---TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
TS+I+G +A FR+ T++ + V A + + I E+H +++
Sbjct: 459 TSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACA-RIGALMCGKEIHAHVLR 517
Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
D L +AL+D+Y +CG+++ A F+ +K+V +W ++ GY +G + A+EL
Sbjct: 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVEL 576
Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
F M E V P+ VTF+ L AC +G+V +G E F SME YS+ P ++HYAC+VDLLG
Sbjct: 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636
Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
RAG L +A F+ +MP P+ VW ALL++CR+H VE+ +AA IF+L+ N G Y+
Sbjct: 637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNS-VGYYI 695
Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
L N A AGKWD V +R+ M+ G+ D GCSWV
Sbjct: 696 LLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 1e-49
Identities = 111/373 (29%), Positives = 201/373 (53%), Gaps = 14/373 (3%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G ++ + + + +L + ++ G L +A +F ++P+R L ++N ++ GY K
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK 164
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
G +E+L L +++ +G RPD YTF +L+ TC +P GR VHA +++ +
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLR--TC--GGIPDLA-RGREVHAHVVRFGFE 219
Query: 184 AD-DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
D DV+ AL+ YVK G AR+VFD M ++ I +MISG+ G + E+F
Sbjct: 220 LDVDVV-NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT 278
Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
+V+ D++ ++I + + R E+H ++K F DV + ++L+ MY G
Sbjct: 279 MRELSVDPDLMTITSVISACEL-LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337
Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
+A +VF M+ K+ +WT+MI GY KNG P++ALE + +M++ V P+ +T LS
Sbjct: 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
AC G +D G ++ E ER + + A ++++ + +++AL+ +PEK +
Sbjct: 398 ACACLGDLDVGVKLHELAERKGLISYVVVANA-LIEMYSKCKCIDKALEVFHNIPEK-DV 455
Query: 419 DVWAALLSSCRLH 431
W ++++ RL+
Sbjct: 456 ISWTSIIAGLRLN 468
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 2e-41
Identities = 94/319 (29%), Positives = 158/319 (49%), Gaps = 23/319 (7%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G ++HAH+ + G + + ++ L+ +++KCG + A +FD +P+R ++N MI+GY +
Sbjct: 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE 265
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
NG+ E L L + PD T + ++ A LGR +H ++K
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD-----ERLGREMHGYVVKTGFA 320
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
D + +L+ Y+ G A VF M K+ + T+MISG+ G + A E +
Sbjct: 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA-L 379
Query: 244 VEKDIVVYNAMIEGYSISIETARKA----------LEVHCQLIKNVFFEDVKLGSALVDM 293
+E+D V + I+I + A +++H + V + +AL++M
Sbjct: 380 MEQDNVSPD------EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433
Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
Y+KC ID A VF ++ +K+V +WTS+I G N +AL F M ++PN VT
Sbjct: 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTL 492
Query: 354 LGALSACGHAGLVDKGREI 372
+ ALSAC G + G+EI
Sbjct: 493 IAALSACARIGALMCGKEI 511
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 4e-29
Identities = 90/354 (25%), Positives = 160/354 (45%), Gaps = 49/354 (13%)
Query: 62 FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
G ++H + KTGV +T +S L+ ++ KCG ++ A +FD +P++T A+N M+AGY
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY 300
Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
+G EE+L L ++ SG D +TFS++++ + + HA +++
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL-----LEHAKQAHAGLIRTG 355
Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
D V TALVD Y K G+ AR VFD M KN+I ++I+G+ + G A E+F
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415
Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
+ + + + +V F A++ G +
Sbjct: 416 RMIAEGVAP--------------------------NHVTF------LAVLSACRYSGLSE 443
Query: 302 DARRVFDHMQQKN-----VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
+F M + + + MI+ G+ G ++A + M++ +P +
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAAL 500
Query: 357 LSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFV 409
L+AC ++ GR E + Y M P K+ +Y +++L +G +A K V
Sbjct: 501 LTACRIHKNLELGRLAAEKL---YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 4e-28
Identities = 67/253 (26%), Positives = 121/253 (47%), Gaps = 10/253 (3%)
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
+GQ+E++L L+ + D + + + R+ G V ++ L
Sbjct: 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEE-----GSRVCSRALSSHPS 118
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
L A++ +V+ G+ +A VF M E+++ ++ G+ G+ ++A ++ +
Sbjct: 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM 178
Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
V D+ + ++ I + EVH +++ F DV + +AL+ MY KCG
Sbjct: 179 LWAGVRPDVYTFPCVLRTCG-GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
+ AR VFD M +++ +W +MI GY +NG + LELF M+E V P+ +T +SA
Sbjct: 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297
Query: 360 CGHAGLVDKGREI 372
C G GRE+
Sbjct: 298 CELLGDERLGREM 310
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 1e-17
Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 18/229 (7%)
Query: 218 ICSTSMISGFMSQGFVEDAEEIFR-----KTVEKDIVVYNAMIEGYSISIETARKALEVH 272
+CS I ++ G +A E+F Y+A++E I++++ R V+
Sbjct: 90 LCSQ--IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEA-CIALKSIRCVKAVY 146
Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
+ + F D + + ++ M+ KCG + DARR+FD M ++N+ +W ++I G GN
Sbjct: 147 WHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYR 206
Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM---EHY 389
+A LF M E TF+ L A G G+++ +K +
Sbjct: 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC-----VLKTGVVGDTFV 261
Query: 390 AC-MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
+C ++D+ + G +E A MPEK + W ++L+ LH E A
Sbjct: 262 SCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEA 309
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 7e-16
Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 42/426 (9%)
Query: 10 SVFSSTHNRHYTLVPPN----QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGL 65
+ + +R + PN + N SL
Sbjct: 294 TFYEEKQSRAKSSRLPNVKGLRKGVSSATNSLSLDKKNNGVKDAELPGQSSGQAASDVEE 353
Query: 66 KIHAHITKTGVKPNTNISIKLLILH--LKCGALKYAGQMFDELPQRTLSAYNYMI-AGYL 122
+ GV + + L+ G +K + +++ +R L + + A +
Sbjct: 354 ENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFF 413
Query: 123 K----NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS-NVPLPRNLGRMVHAQI 177
K V+E+ KL+ + P TF+M++ S C S ++ + R+V
Sbjct: 414 KACKKQRAVKEAFRFA-KLIRN---PTLSTFNMLM--SVCASSQDIDGALRVLRLVQEAG 467
Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM----LEKNVICSTSMISGFMSQGFV 233
LK D K LYT L+ + K GK VF M +E NV ++I G G V
Sbjct: 468 LKADCK----LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523
Query: 234 EDA---EEIFR-KTVEKDIVVYNAMIEGYSISIETARKALEVHCQL---IKNVFFEDVKL 286
A I R K V+ D VV+NA+I S R A +V ++ + + + +
Sbjct: 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR-AFDVLAEMKAETHPIDPDHITV 582
Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNV----FTWTSMIDGYGKNGNPNQALELFCMMQ 342
G AL+ A G++D A+ V+ + + N+ +T ++ + G+ + AL ++ M+
Sbjct: 583 G-ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 343 ECCVQPNYVTFLGAL-SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
+ V+P+ V F AL GHAG +DK EI + R +K Y+ ++ A +
Sbjct: 642 KKGVKPDEV-FFSALVDVAGHAGDLDKAFEILQDA-RKQGIKLGTVSYSSLMGACSNAKN 699
Query: 402 LEQALK 407
++AL+
Sbjct: 700 WKKALE 705
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 4e-12
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 10/164 (6%)
Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQ----QKNVFTWTSMIDGYGKNGNPNQALELF 338
D KL + L+ AK GK+D VF M + NV T+ ++IDG + G +A +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLG 397
+M+ V+P+ V F +SACG +G VD+ ++ M+ + + + P ++
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 398 RAGSLEQALKFVLEMPEKPN----SDVWAALLSSCRLHDDVEMA 437
AG +++A + V +M + N +V+ ++SC D + A
Sbjct: 591 NAGQVDRAKE-VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
+V T+ ++IDGY K G +AL+LF M++ ++PN T+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 6e-08
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 113 AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
YN +I GY K G+VEE+L L ++ G +P+ YT+S+++ C+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG--LCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Query: 289 ALVDMYAKCGKIDDARRVFDHMQQK----NVFTWTSMIDGYGK 327
L+D Y K GK+++A ++F+ M+++ NV+T++ +IDG K
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
T+ S+I GY K G +ALELF M+E V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
T+ ++IDG K G +ALELF M+E ++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
+V T+ ++IDG + G ++A+EL M+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 11/48 (22%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGY 258
+V+ ++I G+ +G VE+A ++F + ++ ++ Y+ +I+G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 113 AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
YN +I G K G+VEE+L L +++ G PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 6e-04
Identities = 70/350 (20%), Positives = 149/350 (42%), Gaps = 47/350 (13%)
Query: 75 GVKPNTNISIKLLILHLKCGALKYAGQMFDELP----QRTLSAYNYMIAGYLKNGQVEES 130
G+K + + L+ K G + ++F E+ + + + +I G + GQV ++
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA------ 184
+ S +PD F+ ++ A C +S G + A + ++KA
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISA--CGQS--------GAVDRAFDVLAEMKAETHPID 576
Query: 185 -DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV----ICSTSMISGFMSQGFVEDAEEI 239
D + AL+ + G+ A+ V+ M+ E N+ T ++ +G + A I
Sbjct: 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636
Query: 240 F----RKTVEKDIVVYNAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLG----SA 289
+ +K V+ D V ++A+++ G++ ++ KA E+ +++ + +KLG S+
Sbjct: 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLD---KAFEI----LQDARKQGIKLGTVSYSS 689
Query: 290 LVDMYAKCGKIDDARRVFDHMQ----QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
L+ + A +++ ++ + V T ++I + +ALE+ M+
Sbjct: 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
+ PN +T+ L A D G ++ + D +KP + C+ L
Sbjct: 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
YN +I+GY K G++EE+L L +++ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.55 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.53 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.53 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.48 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.48 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.47 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.37 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.37 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.28 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.27 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.27 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.25 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.25 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.22 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.21 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.2 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.19 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.19 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.19 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.16 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.15 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.15 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.1 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.1 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.05 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.0 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.0 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.99 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.96 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.92 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.82 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.8 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.79 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.78 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.72 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.72 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.72 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.71 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.71 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.69 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.68 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.67 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.67 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.61 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.58 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.57 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.57 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.56 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.55 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.55 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.52 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.44 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.4 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.4 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.37 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.34 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.34 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.34 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.33 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.33 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.31 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.31 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.3 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.29 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.29 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.27 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.25 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.13 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.11 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.05 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.01 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.0 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.99 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.95 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.93 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.93 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.89 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.84 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.79 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.77 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.76 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.75 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.69 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.68 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.67 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.67 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.64 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.63 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.63 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.62 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.6 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.57 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.54 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.54 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.52 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.51 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.49 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.48 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.47 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.47 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.47 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.46 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.45 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.45 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.43 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.41 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.4 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.39 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.38 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.37 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.36 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.35 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.32 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.31 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.28 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.28 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.23 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.21 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.16 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.15 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.06 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.05 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.05 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.95 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.94 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.92 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.89 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.86 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.81 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.81 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.75 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.72 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.72 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.7 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.69 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.69 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.63 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.51 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.51 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.43 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.42 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.39 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.37 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.33 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.32 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.29 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.21 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.15 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.03 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.03 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.02 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.01 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.0 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.92 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.9 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.84 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.81 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.79 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.75 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.73 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.64 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.61 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.53 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.52 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.51 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.46 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.12 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.12 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.11 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.99 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.94 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.84 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.83 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.71 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.67 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.63 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.59 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.58 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.58 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.37 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.35 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.25 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.21 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.14 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.14 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.11 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.02 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.99 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.94 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.86 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.79 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.65 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.52 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.41 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.17 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.99 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.92 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.89 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.89 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.46 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.43 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.27 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.99 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.96 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 91.87 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.82 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.62 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.54 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.34 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.32 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.97 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.76 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.62 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.5 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.61 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.47 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.44 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.27 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.24 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.22 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.94 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.91 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.82 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.32 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.1 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.09 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.08 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.04 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.96 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 87.86 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.82 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.68 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.61 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.54 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.2 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.18 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.91 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.52 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.42 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.34 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 86.28 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.07 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 85.82 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.59 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.58 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.47 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 85.27 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.08 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.67 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.91 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.5 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 83.22 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.22 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.66 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 82.37 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.12 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.9 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 81.82 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 81.75 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.94 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.71 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.03 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-71 Score=561.36 Aligned_cols=451 Identities=33% Similarity=0.612 Sum_probs=440.2
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 120 (499)
..|+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|++||..+||.+|.+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~ 198 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGG 198 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCC
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (499)
|++.|++++|+++|++|.+.|+.||..||+.++.+| ...+..+.+.+++..+.+.|+.||..+|+.|+++|+++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~-----~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS-----AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH-----hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999 888899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHhcChhhHHHHHHHHHHHH
Q 010837 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLI 276 (499)
Q Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 276 (499)
++++|.++|++|.++|+++||+++.+|++.|++++|+++|++|. .||..||+.++.+|++. +..++|.+++..|.
T Consensus 274 ~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~i~~~m~ 352 (697)
T PLN03081 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL-ALLEHAKQAHAGLI 352 (697)
T ss_pred CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-cchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 78999999999999988 88999999999999
Q ss_pred HcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010837 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356 (499)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 356 (499)
+.|+.||..+|++|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
+.+|++.|.+++|.++|+.|.++.|+.|+..+|+.++++|++.|++++|.++++++..+|+..+|+.|+.+|...|+++.
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999977899999999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccccccCCC
Q 010837 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498 (499)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
|..+++++.+.+|.. ..+|..++.+|++.|++++|.++++.|.+.|+.+.++++||+++++
T Consensus 513 a~~~~~~l~~~~p~~-~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~ 573 (697)
T PLN03081 513 GRLAAEKLYGMGPEK-LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQ 573 (697)
T ss_pred HHHHHHHHhCCCCCC-CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCe
Confidence 999999999888876 7899999999999999999999999999999999999999998764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-69 Score=558.77 Aligned_cols=457 Identities=32% Similarity=0.533 Sum_probs=440.8
Q ss_pred ccccccCCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHH
Q 010837 34 QNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSA 113 (499)
Q Consensus 34 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 113 (499)
..+...+..||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+||+.+
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s 356 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS 356 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeee
Confidence 34555677888888888888888888888888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHH
Q 010837 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193 (499)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (499)
||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+| ...++.+.+.++++.+.+.|+.|+..+|+.|+
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~-----~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC-----ACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH-----hccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHhcChhhHHHHHH
Q 010837 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETARKALE 270 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~ 270 (499)
++|+++|++++|.++|++|.++|..+|++++.+|++.|+.++|+++|++|. .||..||+.+|.+|++. |..+.+.+
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~-g~l~~~~~ 510 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI-GALMCGKE 510 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhh-chHHHhHH
Confidence 999999999999999999999999999999999999999999999999997 79999999999999888 88999999
Q ss_pred HHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 010837 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350 (499)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 350 (499)
++..+.+.|+.++..++++|+++|++.|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 430 (499)
.||+.++.+|++.|.+++|.++|+.|.++.|+.|+..+|+.++++|++.|++++|.+++++|.-+||..+|++|+.+|..
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999977899999999999999999999999999999999888999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccccccCCC
Q 010837 431 HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
.|+.+.++...+++.+..|.. ...|..+.+.|.+.|+|++|.++.+.|.+.|+++++++|||+++++
T Consensus 670 ~~~~e~~e~~a~~l~~l~p~~-~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 670 HRHVELGELAAQHIFELDPNS-VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred cCChHHHHHHHHHHHhhCCCC-cchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 999999999999999999887 8899999999999999999999999999999999999999999875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-66 Score=534.72 Aligned_cols=438 Identities=24% Similarity=0.348 Sum_probs=410.8
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCC-----------------------------------ChHHHHHHH
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKP-----------------------------------NTNISIKLL 87 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------------------------~~~~~~~l~ 87 (499)
|+..+|+.+|.+|++.|++++|.++|++|.+.|+.| |..+++.|+
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 466666666666666666666666666666555555 455567888
Q ss_pred HHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcc
Q 010837 88 ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167 (499)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 167 (499)
.+|+++|++++|.++|++|+++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+| ...++.
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~-----~~~g~~ 304 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC-----ELLGDE 304 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH-----HhcCCh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC---
Q 010837 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV--- 244 (499)
Q Consensus 168 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--- 244 (499)
+.+.+++..+.+.|+.||..+|+.|+.+|+++|++++|.++|++|.++|..+|++++.+|++.|++++|+++|++|.
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHH
Q 010837 245 -EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323 (499)
Q Consensus 245 -~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 323 (499)
.||..+|+.++.+|++. ++.+.+.++++.+.+.|+.|+..+|++|+++|++.|++++|.++|++|.++|..+|+.+|.
T Consensus 385 ~~Pd~~t~~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 385 VSPDEITIASVLSACACL-GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCceeHHHHHHHHhcc-chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 69999999999999888 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHH
Q 010837 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 403 (499)
+|++.|+.++|.++|++|.. ++.||..||+.++.+|++.|+++.+.+++..+. +.|+.++..++++|+++|+++|+++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechHHHHHHHHcCCHH
Confidence 99999999999999999986 599999999999999999999999999999999 6699999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH-hC
Q 010837 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK-LR 482 (499)
Q Consensus 404 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 482 (499)
+|.++|+.+ .||..+|+++|.+|++.|+.++|.++|++|.+.|..|+..+|+.++.+|.+.|++++|.++|+.|. +.
T Consensus 542 ~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 542 YAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 999999999 689999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred CCccCccc
Q 010837 483 GVLKDTGC 490 (499)
Q Consensus 483 ~~~~~~~~ 490 (499)
|+.|+..+
T Consensus 620 gi~P~~~~ 627 (857)
T PLN03077 620 SITPNLKH 627 (857)
T ss_pred CCCCchHH
Confidence 99998643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-63 Score=503.67 Aligned_cols=445 Identities=16% Similarity=0.214 Sum_probs=421.5
Q ss_pred cCCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCC-CCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHH
Q 010837 39 LSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM 117 (499)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 117 (499)
.+..++...|..++..|++.|++++|.++|++|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|..||..+|+.+
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 34456788899999999999999999999999999985 56888889999999999999999999999999999999999
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (499)
|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+| .+.++.+.|.++|++|.+.|+.||..+|+.+|.+|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y-----~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTC-----AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred hCCChhHHHHHHHhccC----CChHhHHHHHHHHHhCCCHHHHHHHHHhcC------CCChhhHHHHHHHHhcChhhHHH
Q 010837 198 KGGKTSYARIVFDMMLE----KNVICSTSMISGFMSQGFVEDAEEIFRKTV------EKDIVVYNAMIEGYSISIETARK 267 (499)
Q Consensus 198 ~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~~ 267 (499)
+.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++. |+.++
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~-G~lde 597 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA-GQVDR 597 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC-CCHHH
Confidence 99999999999999954 689999999999999999999999999994 58999999999999988 88999
Q ss_pred HHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010837 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (499)
|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 7999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHH
Q 010837 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDV 420 (499)
Q Consensus 344 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~ 420 (499)
.|+.||..+|+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.||.+|++.|++++|.++|++|.. .||..+
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999999999999998 569999999999999999999999999999999976 699999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh----c-------------------CChHHHHHHHH
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA----A-------------------GKWDSVTELRE 477 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~ 477 (499)
|+.++.+|++.|++++|.+++++|.+.|..|+..+|+.++..|.+ . +..++|..+|+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999876542 2 12467999999
Q ss_pred HHHhCCCccCccc
Q 010837 478 KMKLRGVLKDTGC 490 (499)
Q Consensus 478 ~~~~~~~~~~~~~ 490 (499)
+|.+.|+.||..+
T Consensus 837 eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 837 ETISAGTLPTMEV 849 (1060)
T ss_pred HHHHCCCCCCHHH
Confidence 9999999999644
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=498.99 Aligned_cols=438 Identities=18% Similarity=0.222 Sum_probs=412.3
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC----CCChHHHHHHH
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP----QRTLSAYNYMI 118 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li 118 (499)
|+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998 58999999999
Q ss_pred HHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHH--cCCCCchhHHHHHHHHH
Q 010837 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK--CDVKADDVLYTALVDSY 196 (499)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~ 196 (499)
.+|++.|++++|.++|++|.+.|+.||..||+.+|.+| .+.++.+.|.+++.+|.+ .|+.||..+|++|+.+|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~-----~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC-----GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 889999999999999986 68999999999999999
Q ss_pred HhCCChhHHHHHHHhccCC----ChHhHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHhcChhhHHHH
Q 010837 197 VKGGKTSYARIVFDMMLEK----NVICSTSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKA 268 (499)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a 268 (499)
++.|++++|.++|+.|.+. +..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++. ++.++|
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~-G~~eeA 668 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA-GDLDKA 668 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHHH
Confidence 9999999999999999764 66899999999999999999999999997 68999999999999988 889999
Q ss_pred HHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC----CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ----QKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
.+++++|.+.|+.|+..+|++|+.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999995 589999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----c-------------------CC
Q 010837 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----A-------------------GS 401 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------~~ 401 (499)
|+.||..||+.++.+|++.|++++|.+++++|. +.|+.||..+|+.++..+.+ + +.
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w 827 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW 827 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch
Confidence 999999999999999999999999999999998 66999999999999876432 1 12
Q ss_pred HHHHHHHHHhCCC---CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 402 LEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 402 ~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
.+.|..+|++|.+ .||..||+.++.+++..+..+.+..+++.+...+..++..+|+.++.++.+. .++|..++++
T Consensus 828 ~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 828 TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 4679999999988 6999999999988888899999999999988888888889999999998432 3689999999
Q ss_pred HHhCCCccCcc
Q 010837 479 MKLRGVLKDTG 489 (499)
Q Consensus 479 ~~~~~~~~~~~ 489 (499)
|...|+.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99999999975
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=459.30 Aligned_cols=432 Identities=15% Similarity=0.175 Sum_probs=403.8
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhC-CCCChHHHHHHHHHHHcCCChhHHHHHhccCC----CCChHHHHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELP----QRTLSAYNY 116 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ 116 (499)
+.+..+++.+|..+.+.|++++|.++|+.|...+ +.||..+|+.++.++++.++++.+.+++..|. .||+.+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3455689999999999999999999999999864 78999999999999999999999999999886 489999999
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 010837 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196 (499)
Q Consensus 117 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (499)
|+..|++.|++++|.++|++|. .||..+|+.++.+| .+.++.+.|..+|++|.+.|+.|+..+|+.++.+|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~-----~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGL-----VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHH-----HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 9999999999999999999996 58999999999999 88899999999999999999999999999999999
Q ss_pred HhCCChhHHHHHHHhccC----CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHH
Q 010837 197 VKGGKTSYARIVFDMMLE----KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272 (499)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 272 (499)
++.|+.+.+.+++..+.+ +|..+|++++.+|++.|++++|.++|++|.++|..+|+.+|.+|++. |..++|.++|
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~-g~~~eA~~lf 313 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH-GYSEEALCLY 313 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhC-CCHHHHHHHH
Confidence 999999999999888754 58899999999999999999999999999999999999999999998 8899999999
Q ss_pred HHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010837 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348 (499)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 348 (499)
++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+ +|..+|++|+.+|++.|++++|.++|++|. .|
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RK 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CC
Confidence 9999999999999999999999999999999999999874 689999999999999999999999999996 47
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHHHHHHH
Q 010837 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPNSDVWAAL 424 (499)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~l 424 (499)
|..+|+.+|.+|++.|+.++|.++|++|. +.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .|+..+|+.+
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 89999999999999999999999999999 559999999999999999999999999999999975 5999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCcccccc
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 493 (499)
+.+|++.|++++|.++++++ +..|+..+|+.|+.+|...|+++.|.++++++.+ +.|+....|+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~ 532 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYV 532 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchH
Confidence 99999999999999998764 5678889999999999999999999999999864 5565433333
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=253.46 Aligned_cols=421 Identities=10% Similarity=0.020 Sum_probs=199.3
Q ss_pred cchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHH
Q 010837 45 ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGY 121 (499)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 121 (499)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+ .+..++..+...+
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY 543 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3344444444444444444444444444332 22333334444444444444444444444321 2333444444444
Q ss_pred HhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCC
Q 010837 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201 (499)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (499)
.+.|++++|...++++.+.+ +.+...+..+...+ ...++.+.+..+++.+.+.. +.+...|..+...+...|+
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY-----LGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH-----HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 44444444444444444332 22223333344444 44444445555544444322 3334445555555555555
Q ss_pred hhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHhcChhhHHHHHHHHHHH
Q 010837 202 TSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--EK-DIVVYNAMIEGYSISIETARKALEVHCQL 275 (499)
Q Consensus 202 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 275 (499)
+++|.+.|+.+.+. +...+..+...+.+.|++++|...|+++. .| +..++..+...+... |+.++|..+++.+
T Consensus 617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~ 695 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA-KRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 55555555444321 33344444555555555555555554443 12 233333333333333 4444555555555
Q ss_pred HHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010837 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353 (499)
Q Consensus 276 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 353 (499)
.+.+. .+...+..+...+.+.|++++|...|+++.+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+
T Consensus 696 ~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 696 QKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred HhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 44432 2334444455555555555555555555432 333444445555555555555555555554432 3344455
Q ss_pred HHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc
Q 010837 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLH 431 (499)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~ 431 (499)
..+...|...|+.++|...|+++.+. .+.+..++..+...+...|+ ++|+..++++.. +.+..++..+...+...
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 55555555555555555555555521 12244455555555555555 445555555443 22334444555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
|++++|.+.++++++.++.. +.++..++.++.+.|++++|.+++++|.
T Consensus 851 g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPEA-AAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666555543 5555555666666666666666555553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-26 Score=244.60 Aligned_cols=423 Identities=13% Similarity=0.088 Sum_probs=324.4
Q ss_pred hHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHh
Q 010837 47 SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLK 123 (499)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 123 (499)
....++..+.+.|++++|.++++.+.+.. +.+..++..+...+...|++++|...|+++.+ .+...+..+...+..
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 34445556666667777777776666543 45666777777777777888888887776542 345566777777777
Q ss_pred CCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChh
Q 010837 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203 (499)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 203 (499)
.|++++|.+.|+++.+.+ +.+..++..+...+ ...++.+.+...+..+.+.+ +.+...+..++..|.+.|+++
T Consensus 512 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTID-PKNLRAILALAGLY-----LRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH
Confidence 888888888888877653 33555666666666 66777788888887776654 455567777888888888888
Q ss_pred HHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHhcChhhHHHHHHHHHHHHH
Q 010837 204 YARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTV--EK-DIVVYNAMIEGYSISIETARKALEVHCQLIK 277 (499)
Q Consensus 204 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 277 (499)
+|.++++.+.+ .+...|..+...+...|++++|.+.|+++. .| +...+..+...+... ++.++|...++.+.+
T Consensus 585 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM-KNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Confidence 88888888754 356778888888888888888888888776 33 344555555555444 778888888888877
Q ss_pred cccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 010837 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354 (499)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 354 (499)
... .+...+..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|.+.|+++... .|+..++.
T Consensus 664 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 740 (899)
T TIGR02917 664 LKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAI 740 (899)
T ss_pred cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHH
Confidence 543 3466778888888888888888888888764 35667778888888999999999999998875 45557777
Q ss_pred HHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcC
Q 010837 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHD 432 (499)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 432 (499)
.+..++.+.|++++|.+.++.+.+. .+.+...+..+...|...|++++|.+.|+++.+ +++..+++.+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 8888899999999999999988843 234677888899999999999999999998876 466788899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
+ .+|+..++++.+..+.. +.++..++.++...|++++|.+.++++.+.+..
T Consensus 819 ~-~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNI-PAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred c-HHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9 88999999999988876 788889999999999999999999999987643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-20 Score=196.96 Aligned_cols=417 Identities=11% Similarity=0.041 Sum_probs=314.6
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC--CCh---HHHHH----------
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTL---SAYNY---------- 116 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~---------- 116 (499)
...+...|++++|...|++.++.. +.+...+..+..++.+.|++++|+..|++..+ |+. ..|..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345667899999999999998875 45778888899999999999999999987763 221 12222
Q ss_pred --HHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHH
Q 010837 117 --MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194 (499)
Q Consensus 117 --li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 194 (499)
....+.+.|++++|++.|++..+.. +.+...+..+-..+ ...++.+.|...++...+.. +.+...+..+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~-----~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVA-----MARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 2345678899999999999988863 23445555666666 78889999999999988764 344556667777
Q ss_pred HHHhCCChhHHHHHHHhccCCC------------hHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCCh-hhHHHHHHHHh
Q 010837 195 SYVKGGKTSYARIVFDMMLEKN------------VICSTSMISGFMSQGFVEDAEEIFRKTV--EKDI-VVYNAMIEGYS 259 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~-~~~~~ll~~~~ 259 (499)
.|. .++.++|+.+++.+.... ...+..+...+...|++++|.+.|++.. .|+. ..+..+...+.
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 764 467899998888775421 2235556777889999999999999887 4543 34444444454
Q ss_pred cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC----Ch---------hHHHHHHHHHH
Q 010837 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK----NV---------FTWTSMIDGYG 326 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~---------~~~~~l~~~~~ 326 (499)
.. |+.++|...++.+.+.... +...+..+...+.+.|+.++|...++.+... +. ..+..+...+.
T Consensus 507 ~~-G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 507 QA-GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred Hc-CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 44 8899999999998875432 3444445555677889999999999987642 11 11234566788
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 010837 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 405 (499)
..|+.++|..+++. .+.+...+..+...+.+.|+.++|...|+.+.+ ..| +...+..++..|...|++++|
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 89999999999872 355666777888999999999999999999994 356 678899999999999999999
Q ss_pred HHHHHhCCC-C-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCC-----chhHHHHHHHHhcCChHHHHHHHHH
Q 010837 406 LKFVLEMPE-K-PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP-----GAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 406 ~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
++.++.... . .+..++..+..++...|++++|.++++++++..+...+ ..+..++..+.+.|++++|.+.+++
T Consensus 657 ~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 657 RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998876 3 45567777888899999999999999999987655422 3566778999999999999999998
Q ss_pred HH-hCCCccC
Q 010837 479 MK-LRGVLKD 487 (499)
Q Consensus 479 ~~-~~~~~~~ 487 (499)
.. ..|+.|.
T Consensus 737 Al~~~~~~~~ 746 (1157)
T PRK11447 737 AMVASGITPT 746 (1157)
T ss_pred HHhhcCCCCC
Confidence 75 3445443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-21 Score=173.00 Aligned_cols=417 Identities=13% Similarity=0.116 Sum_probs=234.1
Q ss_pred hHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHh
Q 010837 47 SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLK 123 (499)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 123 (499)
....+.+-.-+.|++.+|.+.....-+.+ +.+....-.+-..+....+++....--....+ ....+|..+.+.+-.
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 35666777778899999988766554443 22222222333344444444444333222222 234466666666666
Q ss_pred CCChhhHHHHHHHHHHcCCCC-ChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchh-HHHHHHHHHHhCCC
Q 010837 124 NGQVEESLSLVRKLVSSGERP-DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGK 201 (499)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 201 (499)
.|++++|+.+++.+.+. +| ....|..+-.++ ...++.+.|.+.|.+.++.. |+.. ..+.+....-..|+
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al-----~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAAL-----VTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGR 199 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHH-----HhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcc
Confidence 66666666666666664 33 234555555555 66666666666666555432 3333 22233344444566
Q ss_pred hhHHHHHHHhccCC--C-hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCCh---hhHHHHHHHHhcChhhHHHHHHHHHHH
Q 010837 202 TSYARIVFDMMLEK--N-VICSTSMISGFMSQGFVEDAEEIFRKTVEKDI---VVYNAMIEGYSISIETARKALEVHCQL 275 (499)
Q Consensus 202 ~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~a~~~~~~~ 275 (499)
+++|...+.+..+. . .+.|+.|...+-.+|+...|+..|++.++-|. ..|-.+-..+. ..+.++.|..-+...
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~k-e~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYK-EARIFDRAVSCYLRA 278 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHH-HHhcchHHHHHHHHH
Confidence 66666655554332 2 34566666666666666666666666653322 23333333332 224555555555444
Q ss_pred HHcccCCC-chhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 010837 276 IKNVFFED-VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351 (499)
Q Consensus 276 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 351 (499)
... .|+ ...+..+...|...|.+|.|+..|++..+ | -...|+.|..++-..|++.+|...|++..... +.-..
T Consensus 279 l~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~had 355 (966)
T KOG4626|consen 279 LNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHAD 355 (966)
T ss_pred Hhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHH
Confidence 432 222 34455555556666666666666666554 2 23456666666666666666666666665531 22334
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSC 428 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~ 428 (499)
..+.|...+...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|+..+++... +|+ ...|+.+...|
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHH
Confidence 55666666666666666666666655 33442 34456666666666666666666666555 343 34666666666
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
-..|+.+.|.+.+.+++..+|.. ..+++.|+.+|...|++.+|++-++...+
T Consensus 433 ke~g~v~~A~q~y~rAI~~nPt~-AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQINPTF-AEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcCcHH-HHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 66666666666666666666666 66666666666666666666666666544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=171.31 Aligned_cols=415 Identities=12% Similarity=0.144 Sum_probs=328.8
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYM 117 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 117 (499)
+|.+......+-..+....+.+.....-....+.. +--..+|..+...+-..|++++|+.+++.+.+ ..+..|-.+
T Consensus 78 d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inl 156 (966)
T KOG4626|consen 78 DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINL 156 (966)
T ss_pred CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhH
Confidence 33344443333344444445554443333333332 33567889999999999999999999998774 366789999
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (499)
..++...|+.+.|...|.+.++. .|+.....+-+..+. ...|..++|..-+...++.. +-=...|+.|...+.
T Consensus 157 a~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl----ka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~ 229 (966)
T KOG4626|consen 157 AAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL----KAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFN 229 (966)
T ss_pred HHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH----HhhcccchhHHHHHHHHhhC-CceeeeehhcchHHh
Confidence 99999999999999999998874 676655444333332 55677888888887776643 223457888999999
Q ss_pred hCCChhHHHHHHHhccCCC---hHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHH
Q 010837 198 KGGKTSYARIVFDMMLEKN---VICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVH 272 (499)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 272 (499)
..|+...|+.-|++..+-| ...|..|...|-..+.+++|...|.+.. .|+......-+.......|..|.|+.-+
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHH
Confidence 9999999999999987654 4688999999999999999999998876 5655433333334445569999999999
Q ss_pred HHHHHcccCCC-chhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010837 273 CQLIKNVFFED-VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348 (499)
Q Consensus 273 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 348 (499)
++.++.. |+ +..|+.|..++-..|++.+|.+.|++... | ...+.+.|...|...|.+++|..+|....+ +.|
T Consensus 310 kral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p 385 (966)
T KOG4626|consen 310 KRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFP 385 (966)
T ss_pred HHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hCh
Confidence 9998864 44 56899999999999999999999999875 3 567888999999999999999999999887 556
Q ss_pred CH-HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHH
Q 010837 349 NY-VTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAAL 424 (499)
Q Consensus 349 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l 424 (499)
.- ..++.|...|-++|++++|...|++.. .++|+ ...|+.+...|-..|+.+.|++.+.+... +|. ...++.|
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL 462 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL 462 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence 54 578899999999999999999999998 78885 66899999999999999999999998887 454 5788999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHH
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (499)
...|..+|+..+|++-++..++..|+. +.+|..++.++.-..+|.+
T Consensus 463 asi~kDsGni~~AI~sY~~aLklkPDf-pdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 463 ASIYKDSGNIPEAIQSYRTALKLKPDF-PDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHhhccCCcHHHHHHHHHHHccCCCC-chhhhHHHHHHHHHhcccc
Confidence 999999999999999999999999999 8999998887765554433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-19 Score=187.07 Aligned_cols=92 Identities=9% Similarity=0.090 Sum_probs=68.0
Q ss_pred HHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHH-HHHHHcCCChhHHHHHhccCCC--C-ChHHHHHHHHHHHh
Q 010837 48 LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL-LILHLKCGALKYAGQMFDELPQ--R-TLSAYNYMIAGYLK 123 (499)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 123 (499)
...+.+.+...|++++|.+.|+.+.+.+ +|+....... .......|+.++|++.|+++.+ | +...+..+...+..
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 3455567788999999999999998764 4443321112 2223345899999999999874 3 55678888899999
Q ss_pred CCChhhHHHHHHHHHHc
Q 010837 124 NGQVEESLSLVRKLVSS 140 (499)
Q Consensus 124 ~g~~~~a~~~~~~m~~~ 140 (499)
.|+.++|++.|+++.+.
T Consensus 194 ~g~~~eAl~~l~~~~~~ 210 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKS 210 (1157)
T ss_pred cCCHHHHHHHHHHHhhC
Confidence 99999999999998653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-18 Score=173.07 Aligned_cols=414 Identities=12% Similarity=0.010 Sum_probs=263.9
Q ss_pred HHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhC
Q 010837 48 LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKN 124 (499)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 124 (499)
+......+...|+++.|...|++.++. .|+...|..+..+|.+.|++++|+..++...+ .+..+|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445567778899999999999998875 47788899999999999999999999998764 3566899999999999
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhH
Q 010837 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204 (499)
Q Consensus 125 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 204 (499)
|++++|+.-|......+-..+.. ...++... .. ..+........+.. +++...+..+.. |........
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~-----l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-SAQAVERL-----LK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHH-----HH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCc
Confidence 99999999887765542111111 11111111 00 11111122222211 222222222222 222111111
Q ss_pred HHHHHHhccCCCh---HhHHHHHHH---HHhCCCHHHHHHHHHhcCC-----CCh-hhHHHHHHHHhcChhhHHHHHHHH
Q 010837 205 ARIVFDMMLEKNV---ICSTSMISG---FMSQGFVEDAEEIFRKTVE-----KDI-VVYNAMIEGYSISIETARKALEVH 272 (499)
Q Consensus 205 A~~~~~~~~~~~~---~~~~~l~~~---~~~~g~~~~a~~~~~~~~~-----~~~-~~~~~ll~~~~~~~~~~~~a~~~~ 272 (499)
...-++...+.+. ..+..+... ....+++++|.+.|++..+ |+. ..+..+...+ ...|+.++|...+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~-~~~g~~~eA~~~~ 354 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK-CLKGKHLEALADL 354 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 2111221111111 111111111 1234677788888877663 222 2233333333 3347777888888
Q ss_pred HHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010837 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349 (499)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 349 (499)
+..++... .....|..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...|++..+.. +.+
T Consensus 355 ~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 355 SKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 87776532 1344666777778888888888888887654 356778888888888888888888888887753 334
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH-H-------
Q 010837 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNS-D------- 419 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~-~------- 419 (499)
...+..+..++.+.|++++|...|++... ..| +...++.+...+...|++++|++.|++... .|+. .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 56677777788888888888888888873 234 567778888888888888888888887665 2221 1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
.++..+..+...|++++|.++++++++.++.. ...+..++.++.+.|++++|.+.+++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~-~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPEC-DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 11112222334588888888888888887766 667888888888888888888888887654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-20 Score=174.07 Aligned_cols=289 Identities=15% Similarity=0.124 Sum_probs=217.1
Q ss_pred HHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCC-C------hhhHHHHHHHHhcCh
Q 010837 193 VDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTVEK-D------IVVYNAMIEGYSISI 262 (499)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~------~~~~~~ll~~~~~~~ 262 (499)
...+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+... + ...+..+...+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~- 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA- 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC-
Confidence 33456678888888888887653 4456777778888888888888888777632 1 12344555555544
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCC--------hhHHHHHHHHHHhCCChhHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN--------VFTWTSMIDGYGKNGNPNQA 334 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~a 334 (499)
|+.++|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 77778888888887653 2356677888888888999999988888876421 12355677778888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 010837 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK--MEHYACMVDLLGRAGSLEQALKFVLEM 412 (499)
Q Consensus 335 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (499)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .|+ ..++..++.+|.+.|++++|.+.++++
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988753 334567777888888999999999999998833 343 456788888999999999999999887
Q ss_pred CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh---cCChHHHHHHHHHHHhCCCccCc
Q 010837 413 PE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA---AGKWDSVTELREKMKLRGVLKDT 488 (499)
Q Consensus 413 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 488 (499)
.+ .|+...+..++..+.+.|++++|..+++++.+..|+. ..+..++..+.. .|+.+++..++++|.+.++.|+|
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~--~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL--RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH--HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 76 5777777888888999999999999999988876544 567666666554 45888999999999988888887
Q ss_pred c
Q 010837 489 G 489 (499)
Q Consensus 489 ~ 489 (499)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 5
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-19 Score=172.46 Aligned_cols=296 Identities=13% Similarity=0.056 Sum_probs=200.3
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCc---hhHHHHHHH
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD---DVLYTALVD 194 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 194 (499)
...+...|++++|+..|+++.+.+ +.+..++..+...+ ...++.+.|..+++.+.+.+..++ ...+..++.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~-----~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLF-----RRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH-----HHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 334566777777777777777642 12223444444444 455555555555555544321111 123444555
Q ss_pred HHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHH
Q 010837 195 SYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 271 (499)
.|.+.|++++|.++|+++.+ .+..++..++..+.+.|++++|.+.+
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------------------------------- 164 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVA------------------------------- 164 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHH-------------------------------
Confidence 55555555555555555543 13344445555555555555555544
Q ss_pred HHHHHHcccCCC----chhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 272 HCQLIKNVFFED----VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 272 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
+.+.+.+..+. ...+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|.++++++.+.
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 165 -ERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred -HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44444332221 12345577778899999999999999864 2 4567788889999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHH
Q 010837 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAA 423 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~ 423 (499)
+......++..+..+|...|++++|...++++.+ ..|+...+..++..+.+.|++++|.++++++.+ .|+..+++.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~ 320 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHR 320 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 4322346788899999999999999999999983 357767778899999999999999999998776 599999998
Q ss_pred HHHHHhh---cCCHHHHHHHHHHHHhcCCCCCCc
Q 010837 424 LLSSCRL---HDDVEMANIAANEIFKLNANDRPG 454 (499)
Q Consensus 424 l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 454 (499)
++..+.. .|+.+++..+++++.+.++.+++.
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 8887764 568999999999999876666444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-18 Score=171.44 Aligned_cols=407 Identities=11% Similarity=-0.013 Sum_probs=239.6
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYM 117 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 117 (499)
.+.++.-..-.+......|+.++|++++....... +.+...+..+..++.+.|++++|..+|++.. +.+...+..+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35566666667777778888888888888777633 4455567778888888888888888888743 3456667777
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (499)
...+...|++++|+..+++..+. .|+...+..+-.++ ...++.+.|...++.+.+.. +.+...+..+...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l-----~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~ 161 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVY-----KRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 77788888888888888887765 33322243443344 44455555555555555443 223333344444555
Q ss_pred hCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHh-c---Chhh---HHHHHH
Q 010837 198 KGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS-I---SIET---ARKALE 270 (499)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~-~---~~~~---~~~a~~ 270 (499)
..|+.++|++.++.... +......+ . .......+.... . ..+. .++|++
T Consensus 162 ~~~~~e~Al~~l~~~~~-~p~~~~~l--------~---------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 162 NNRLSAPALGAIDDANL-TPAEKRDL--------E---------------ADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred HCCChHHHHHHHHhCCC-CHHHHHHH--------H---------------HHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 55555555555554443 11000000 0 000011111110 0 0011 245666
Q ss_pred HHHHHHHc-ccCCCch-hHH----HHHHHHHhcCChHHHHHHHHhcCCCC---h-hHHHHHHHHHHhCCChhHHHHHHHH
Q 010837 271 VHCQLIKN-VFFEDVK-LGS----ALVDMYAKCGKIDDARRVFDHMQQKN---V-FTWTSMIDGYGKNGNPNQALELFCM 340 (499)
Q Consensus 271 ~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~---~-~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (499)
.++.+.+. ...|+.. .+. ..+.++...|++++|+..|+++.+.+ + .....+..+|...|++++|+.+|++
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 66666543 1222221 110 01223455677777887777776531 1 1122245677777888888888777
Q ss_pred HHHcCCCC---CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcC----------CCCC---hhHHHHHHHHHHhcCCHHH
Q 010837 341 MQECCVQP---NYVTFLGALSACGHAGLVDKGREIFESMERDYS----------MKPK---MEHYACMVDLLGRAGSLEQ 404 (499)
Q Consensus 341 m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~~~~~~ 404 (499)
+.+..... .......+..++...|++++|.++++.+..... -.|+ ...+..+...+...|+.++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 76532111 123445555667777888888877777763210 0122 1234556667777788888
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 405 ALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 405 a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
|++.++++.. +.+...+..+...+...|++++|++.++++++..|.. ...+...+..+.+.|++++|.++++++.+
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~-~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN-INLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888877665 3456677777777777888888888888888777766 66777777777788888888888877765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-18 Score=167.98 Aligned_cols=354 Identities=11% Similarity=0.021 Sum_probs=249.1
Q ss_pred cCCChhHHHHHhccCCCC------ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcC
Q 010837 92 KCGALKYAGQMFDELPQR------TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165 (499)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 165 (499)
+..+++..--+|..-++. +......++..+.+.|++++|+.+++........+....+. +..+. ...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~-----l~~g 90 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISP-----LASS 90 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhH-----hhcC
Confidence 344555444444444321 12223445566677777777777777776653333222333 33333 5577
Q ss_pred cchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccC--C-ChHhHHHHHHHHHhCCCHHHHHHHHHh
Q 010837 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE--K-NVICSTSMISGFMSQGFVEDAEEIFRK 242 (499)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (499)
+.+.|...++.+.+.. +.+...+..+...+...|++++|+..+++..+ | +...+..+...+...|++++|...+++
T Consensus 91 ~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 91 QPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 7777777777777654 44555677778888888888888888888755 2 566788888888888998888888877
Q ss_pred cC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhH
Q 010837 243 TV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFT 317 (499)
Q Consensus 243 ~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~ 317 (499)
+. .|+.......+..+... |+.++|...++.+.+....++......+..++.+.|++++|...|+++.+ .+...
T Consensus 170 ~~~~~P~~~~a~~~~~~l~~~-g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~ 248 (656)
T PRK15174 170 QAQEVPPRGDMIATCLSFLNK-SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAAL 248 (656)
T ss_pred HHHhCCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 64 34333222222234333 78888888888887765444455555667788899999999999988765 35667
Q ss_pred HHHHHHHHHhCCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHH
Q 010837 318 WTSMIDGYGKNGNPNQ----ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACM 392 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 392 (499)
+..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+ ..| +...+..+
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~L 324 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 8888889999999885 788999888753 34566788888899999999999999999883 345 56677788
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhH
Q 010837 393 VDLLGRAGSLEQALKFVLEMPE-KPNSD-VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457 (499)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (499)
..+|.+.|++++|++.|+++.. .|+.. .+..+..++...|+.++|...|+++.+..|+..+..|.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ 391 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFE 391 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHH
Confidence 8899999999999999988875 45543 34445677888999999999999999888775344443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-17 Score=166.04 Aligned_cols=189 Identities=10% Similarity=-0.015 Sum_probs=142.4
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHH
Q 010837 290 LVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367 (499)
Q Consensus 290 l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 367 (499)
+...+...|++++|...|+++.. ++...+..+..++.+.|+.++|...+++..+.. +.+...+..+.......|+++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHH
Confidence 34444567777777777776553 334445566667777888888888888877653 223333333444455668888
Q ss_pred HHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010837 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIF 445 (499)
Q Consensus 368 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (499)
+|...+++.. .+.|+...|..+..++.+.|++++|+..+++... +.+...+..+..++...|++++|++.+++++
T Consensus 594 eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888888 4467777888888888999999999999988877 3456677888888888999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+..|.. +..+..++.++...|++++|...+++..+..
T Consensus 671 ~l~P~~-~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 671 KGLPDD-PALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 988877 8889999999999999999999999887643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-16 Score=154.97 Aligned_cols=421 Identities=11% Similarity=0.040 Sum_probs=313.0
Q ss_pred HHHHHHhhhCCCChhhHHHHHHHHHHhCCCCCh--HHHHHHHHHHHcCCChhHHHHHhccCCCCChHH-HHHH--HHHHH
Q 010837 48 LPSALQHYINSDTPFYGLKIHAHITKTGVKPNT--NISIKLLILHLKCGALKYAGQMFDELPQRTLSA-YNYM--IAGYL 122 (499)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l--i~~~~ 122 (499)
|...+ ...+.|+++.|++.|++..+.. |+. .++ .++..+...|+.++|+..+++...|+... +..+ ...+.
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 44444 4568999999999999999875 432 344 88889999999999999999998764443 3333 45788
Q ss_pred hCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCh
Q 010837 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202 (499)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 202 (499)
..|++++|+++|+++.+.. +-+...+..+...+ ...++.+.|...++.+.+. .|+...+..++..+...++.
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y-----~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQ-----ADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH-----hhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 8899999999999999873 22344555556666 7778889999998888765 46666665565556556777
Q ss_pred hHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCC---CCh------hhHHHHHHHHh-cC---h---h
Q 010837 203 SYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTVE---KDI------VVYNAMIEGYS-IS---I---E 263 (499)
Q Consensus 203 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~------~~~~~ll~~~~-~~---~---~ 263 (499)
.+|++.++++.+. +...+..+..++.+.|-...|+++.++-.. +.. ......++.-. .. . .
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6799999999653 577888899999999999999999887541 111 01111111110 00 0 1
Q ss_pred hHHHHHHHHHHHHHc-ccCCCc-hhH-H---HHHHHHHhcCChHHHHHHHHhcCCC----ChhHHHHHHHHHHhCCChhH
Q 010837 264 TARKALEVHCQLIKN-VFFEDV-KLG-S---ALVDMYAKCGKIDDARRVFDHMQQK----NVFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 264 ~~~~a~~~~~~~~~~-~~~~~~-~~~-~---~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~ 333 (499)
..+.++.-++.+... +..|.. ..| . -.+-++...|+..++++.|+.+..+ ...+-..+.++|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 334556666665552 222322 122 2 2345678889999999999999853 34567788999999999999
Q ss_pred HHHHHHHHHHcC-----CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcC----------CCCC---hhHHHHHHHH
Q 010837 334 ALELFCMMQECC-----VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS----------MKPK---MEHYACMVDL 395 (499)
Q Consensus 334 a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~ 395 (499)
|..+|+.+.... ..++......|.-++...+++++|..+++.+..... -.|+ ...+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999986643 123444467889999999999999999999985211 0122 2234556777
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHH
Q 010837 396 LGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (499)
+...|+..+|++.++++.. +-|......+...+...|.+.+|++.++.+....|.. ..+....+..+...|++.+|.
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~-~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS-LILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc-HHHHHHHHHHHHhhhhHHHHH
Confidence 8899999999999999977 5688899999999999999999999999998898887 889999999999999999999
Q ss_pred HHHHHHHh
Q 010837 474 ELREKMKL 481 (499)
Q Consensus 474 ~~~~~~~~ 481 (499)
.+.+.+.+
T Consensus 505 ~~~~~l~~ 512 (822)
T PRK14574 505 LLTDDVIS 512 (822)
T ss_pred HHHHHHHh
Confidence 99887755
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-17 Score=163.20 Aligned_cols=348 Identities=10% Similarity=-0.015 Sum_probs=265.7
Q ss_pred HhCCChhhHHHHHHHHHHc--CCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhC
Q 010837 122 LKNGQVEESLSLVRKLVSS--GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199 (499)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (499)
.++.+|+...-.|..-.++ .-.-+..-...++..+ ...|+.+.|..++...+..... +......++..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~ 89 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIAC-----LRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLAS 89 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHH-----HhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhc
Confidence 3455555554444443322 0111222333444555 7888999999999988876533 344555566777789
Q ss_pred CChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCCh-hhHHHHHHHHhcChhhHHHHHHHHH
Q 010837 200 GKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDI-VVYNAMIEGYSISIETARKALEVHC 273 (499)
Q Consensus 200 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~-~~~~~ll~~~~~~~~~~~~a~~~~~ 273 (499)
|++++|.+.|+++.+. +...+..+...+...|++++|.+.|++.. .|+. ..+..+...+... |+.++|...++
T Consensus 90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~-g~~~eA~~~~~ 168 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLM-DKELQAISLAR 168 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CChHHHHHHHH
Confidence 9999999999999653 56788889999999999999999999987 4554 4455555555444 89999999999
Q ss_pred HHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010837 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349 (499)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 349 (499)
.+......+.. .+..+ ..+.+.|++++|...++.+.+. +...+..+..++...|++++|+..++++.+.. +.+
T Consensus 169 ~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~ 245 (656)
T PRK15174 169 TQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDG 245 (656)
T ss_pred HHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 88776544333 33333 3478899999999999987653 23344556778889999999999999998864 445
Q ss_pred HHHHHHHHHHHcccCcHHH----HHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHH
Q 010837 350 YVTFLGALSACGHAGLVDK----GREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWA 422 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ 422 (499)
...+..+..++...|++++ |...++++. ...| +...+..+...+.+.|++++|+..+++... +.+...+.
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6778888899999999986 899999998 3456 677899999999999999999999999887 34466788
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.+..++.+.|++++|...++++.+.+|.. ...+..++.++...|++++|...+++..+..
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~-~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVT-SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88899999999999999999999988876 5556667888999999999999999987653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-16 Score=159.77 Aligned_cols=430 Identities=9% Similarity=-0.035 Sum_probs=299.4
Q ss_pred CcchHHHH-HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHc-CCChhHHHHHhccCCCCChHHHHHHHHHH
Q 010837 44 TATSLPSA-LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK-CGALKYAGQMFDELPQRTLSAYNYMIAGY 121 (499)
Q Consensus 44 ~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 121 (499)
.+...... .+.+...+++++|.+++.++.+.+ +.+......|..+|.. .++ +++..+++...+.++..+..+...|
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~y 257 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATAL 257 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHH
Confidence 34445555 889999999999999999999997 4566667778788887 477 8898887765567888999999999
Q ss_pred HhCCChhhHHHHHHHHHHcCCC-CChhhHHHHhhhcccc------------------------------c----------
Q 010837 122 LKNGQVEESLSLVRKLVSSGER-PDGYTFSMILKASTCC------------------------------R---------- 160 (499)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~------------------------------~---------- 160 (499)
.+.|+.++|.++++++...-.. |+..++.-++.-.... +
T Consensus 258 i~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (987)
T PRK09782 258 AYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA 337 (987)
T ss_pred HHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 9999999999999998654222 3333333332211100 0
Q ss_pred --------------c----------------------------------CCcCcchhHHHHHHHHHHc-C-CCCchhHHH
Q 010837 161 --------------S----------------------------------NVPLPRNLGRMVHAQILKC-D-VKADDVLYT 190 (499)
Q Consensus 161 --------------~----------------------------------~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~ 190 (499)
. ...|+.++|..+++..... + -.++...-+
T Consensus 338 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 338 TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 0 0111111222222222110 0 011222233
Q ss_pred HHHHHHHhCCC---hhHHHHH-------------------------HHhccC---C--ChHhHHHHHHHHHhCCCHHHHH
Q 010837 191 ALVDSYVKGGK---TSYARIV-------------------------FDMMLE---K--NVICSTSMISGFMSQGFVEDAE 237 (499)
Q Consensus 191 ~l~~~~~~~g~---~~~A~~~-------------------------~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~ 237 (499)
-++..|.+.+. ..++..+ +..... . +...|..+..++.. ++.++|.
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 44555555444 1122111 001111 1 33445555555555 6777788
Q ss_pred HHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCCh
Q 010837 238 EIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315 (499)
Q Consensus 238 ~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 315 (499)
..+.+.. .|+......+...+ ...|+.++|...++.+... .|+...+..+..++.+.|++++|...+++..+.++
T Consensus 497 ~a~~~Al~~~Pd~~~~L~lA~al-~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P 573 (987)
T PRK09782 497 YAWLQAEQRQPDAWQHRAVAYQA-YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL 573 (987)
T ss_pred HHHHHHHHhCCchHHHHHHHHHH-HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8666655 45533222222222 2348899999999987554 34444566677889999999999999998876433
Q ss_pred hHHH---HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHH
Q 010837 316 FTWT---SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYAC 391 (499)
Q Consensus 316 ~~~~---~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 391 (499)
...+ .+.......|++++|...+++..+. .|+...+..+..++.+.|+.++|...+++.. ...| +...+..
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~n 648 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAA 648 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHH
Confidence 3333 3333444569999999999999884 5778889999999999999999999999998 4467 6778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCCh
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 469 (499)
+..++...|++++|++.+++..+ +.+...+..+..++...|++++|+..++++++..|.. ..+.........+..++
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~-a~i~~~~g~~~~~~~~~ 727 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ-ALITPLTPEQNQQRFNF 727 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-chhhhhhhHHHHHHHHH
Confidence 99999999999999999999877 3467789999999999999999999999999999988 88889999999999999
Q ss_pred HHHHHHHHHHHhCCCc
Q 010837 470 DSVTELREKMKLRGVL 485 (499)
Q Consensus 470 ~~A~~~~~~~~~~~~~ 485 (499)
+.|.+-+++-...++.
T Consensus 728 ~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 728 RRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHHhhcCcc
Confidence 9999988887664433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-16 Score=156.32 Aligned_cols=392 Identities=10% Similarity=-0.026 Sum_probs=243.0
Q ss_pred HHHHHHHcCCChhHHHHHhccCC--CCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC-hhhHHHHhhhcccccc
Q 010837 85 KLLILHLKCGALKYAGQMFDELP--QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD-GYTFSMILKASTCCRS 161 (499)
Q Consensus 85 ~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 161 (499)
.....+.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.++..++. .|+ ...+..+-.++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~----- 204 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAY----- 204 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH-----
Confidence 44455556666666666666544 245555666666666666666666666666553 232 33444444455
Q ss_pred CCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHH
Q 010837 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
...++++.|...+......+-..+. ....++..+........+...++.-.. +...+..+.. +......+....-+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhh
Confidence 5555555555555443332211111 111111111111111222222222111 1112221111 111111111111111
Q ss_pred hcCC--CCh-hhHHHH--HHHHhcChhhHHHHHHHHHHHHHcc-cCC-CchhHHHHHHHHHhcCChHHHHHHHHhcCC--
Q 010837 242 KTVE--KDI-VVYNAM--IEGYSISIETARKALEVHCQLIKNV-FFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQ-- 312 (499)
Q Consensus 242 ~~~~--~~~-~~~~~l--l~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 312 (499)
...+ +.. ..+..+ ...-.+..+.+++|...++...+.+ ..| ....+..+...+...|++++|...|++..+
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 1111 110 011111 0011133467889999999998875 223 345778888899999999999999999875
Q ss_pred C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHH
Q 010837 313 K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYA 390 (499)
Q Consensus 313 ~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~ 390 (499)
| +...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++.. .+.| +...+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal---~l~P~~~~~~~ 437 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI---DLDPDFIFSHI 437 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCccCHHHHH
Confidence 3 35578888899999999999999999998763 4457788889999999999999999999998 4456 577788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchh------HHHHHH
Q 010837 391 CMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY------VALSNT 462 (499)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~ 462 (499)
.+..++.+.|++++|+..|++... +.+...++.+...+...|++++|++.|+++++..+....... ......
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 899999999999999999998876 345788999999999999999999999999998876422211 122233
Q ss_pred HHhcCChHHHHHHHHHHHhCCCccCccccc
Q 010837 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSW 492 (499)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 492 (499)
+...|++++|.+++++..+.+ |+....|
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~--p~~~~a~ 545 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIID--PECDIAV 545 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcHHHH
Confidence 445799999999999987754 4443333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-15 Score=153.65 Aligned_cols=368 Identities=10% Similarity=-0.003 Sum_probs=249.5
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYM 117 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 117 (499)
.+.+...+..+...+...|++++|.+++++.++.. +.+...+..+...+.+.|++++|...++++.+ .+.. +..+
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l 122 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL 122 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence 34555568899999999999999999999999875 55677788888999999999999999998763 3555 8888
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCch------hHHH
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD------VLYT 190 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 190 (499)
...+...|+.++|+..++++.+. .|+.. .+..+..++ ...+..+.|...++.... .|+. ....
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l-----~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~ 192 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQAL-----RNNRLSAPALGAIDDANL---TPAEKRDLEADAAA 192 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH-----HHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 88999999999999999999986 55543 334444444 555666777776665432 2321 0111
Q ss_pred HHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCH---HHHHHHHHhcC-----CCChh-hHH----HHHHH
Q 010837 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV---EDAEEIFRKTV-----EKDIV-VYN----AMIEG 257 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~-----~~~~~-~~~----~ll~~ 257 (499)
.++......+ ....+++ ++|++.++.+. .|+.. .+. ..+..
T Consensus 193 ~~~r~~~~~~--------------------------~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 193 ELVRLSFMPT--------------------------RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHhhcccc--------------------------cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 1111111000 0111112 33444444333 11111 000 01222
Q ss_pred HhcChhhHHHHHHHHHHHHHcccC-CCchhHHHHHHHHHhcCChHHHHHHHHhcCCCC-------hhHHHHHHHHHHhCC
Q 010837 258 YSISIETARKALEVHCQLIKNVFF-EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN-------VFTWTSMIDGYGKNG 329 (499)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~g 329 (499)
+... ++.++|...|+.+.+.+.. |+. ....+..+|...|++++|+..|+++.+.+ ......+..++...|
T Consensus 247 Ll~~-g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 247 LLAR-DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHh-hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 2222 5566677777776665432 221 12224667888888888888888875422 234555666778888
Q ss_pred ChhHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHH
Q 010837 330 NPNQALELFCMMQECC-----------VQPNY---VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVD 394 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~-----------~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 394 (499)
++++|..+++++.+.. -.|+. ..+..+...+...|+.++|++.++++... .| +...+..+..
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~ 401 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYAS 401 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 9999998888887642 11232 24556677888899999999999998833 45 6778888999
Q ss_pred HHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 395 LLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.+...|++++|++.++++.. .|+ ...+..++..+...|++++|+.+++++++..|+.
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998887 454 5677777778889999999999999999988877
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-14 Score=127.73 Aligned_cols=301 Identities=16% Similarity=0.150 Sum_probs=203.8
Q ss_pred cCCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCC--Chh-------------------
Q 010837 39 LSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG--ALK------------------- 97 (499)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~------------------- 97 (499)
+.+|..+.+=+.|++. ..+|.+.++.-+|+.|...|++.+..+-..|+...+-.+ ++.
T Consensus 110 l~~~~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~ 188 (625)
T KOG4422|consen 110 LADPLQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTS 188 (625)
T ss_pred cCCchhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccc
Confidence 3446677777777765 457889999999999999999999888877777654221 111
Q ss_pred ------HHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHH
Q 010837 98 ------YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171 (499)
Q Consensus 98 ------~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~ 171 (499)
-|. ++-+....+..+|..+|.++|+--..+.|.+++++-.....+.+..+||.+|.+- . +...+
T Consensus 189 sWK~G~vAd-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~-----S----~~~~K 258 (625)
T KOG4422|consen 189 SWKSGAVAD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGAS-----S----YSVGK 258 (625)
T ss_pred ccccccHHH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHH-----H----hhccH
Confidence 122 3333334567799999999999999999999999999888899999999999875 2 22338
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHH----HHHHhcc----CCChHhHHHHHHHHHhCCCHHH-HHHHHHh
Q 010837 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR----IVFDMML----EKNVICSTSMISGFMSQGFVED-AEEIFRK 242 (499)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~ 242 (499)
.+..+|....+.||..|+|+++.+..+.|+++.|. +++.+|. +|...+|..+|..+.+-++..+ |..+..+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 89999999999999999999999999999987765 4455553 4567788888888888777654 3333332
Q ss_pred cC--------CC----ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcc----cCCC---chhHHHHHHHHHhcCChHHH
Q 010837 243 TV--------EK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNV----FFED---VKLGSALVDMYAKCGKIDDA 303 (499)
Q Consensus 243 ~~--------~~----~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~a 303 (499)
+. +| |...|...+..|... .+.+-|.++..-+.... +.|+ ...|..+..+.++....+.-
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l-~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSL-RDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHh-hhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 12 334455555555433 55555665555443321 1122 12344555556666666666
Q ss_pred HHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 010837 304 RRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351 (499)
Q Consensus 304 ~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 351 (499)
...|+.|.- |+..+...++++..-.|.++-.-++|.++...|..-+..
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 666666653 455566666666666666666667777666665443333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-14 Score=140.00 Aligned_cols=391 Identities=5% Similarity=-0.029 Sum_probs=291.3
Q ss_pred HHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhC
Q 010837 48 LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKN 124 (499)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 124 (499)
...++..+...|+.++|+.++++..... +........+...+...|++++|+++|+++.+ .+...+..++..+...
T Consensus 71 v~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 71 VDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence 3378888888999999999999988221 22334444446688899999999999999874 3566777888899999
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhH
Q 010837 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204 (499)
Q Consensus 125 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 204 (499)
++.++|++.++++... .|+...+..+...+ ...++...|.+.++++.+.. +.+...+..+...+.+.|-...
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~-----~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~ 221 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLN-----RATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEP 221 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHH-----HhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHH
Confidence 9999999999999875 66766664433333 23444545999999998875 5567788889999999999999
Q ss_pred HHHHHHhccCC-ChH--------hHHHHHHHH-----HhCCC---HHHHHHHHHhcCC-----CCh-hh----HHHHHHH
Q 010837 205 ARIVFDMMLEK-NVI--------CSTSMISGF-----MSQGF---VEDAEEIFRKTVE-----KDI-VV----YNAMIEG 257 (499)
Q Consensus 205 A~~~~~~~~~~-~~~--------~~~~l~~~~-----~~~g~---~~~a~~~~~~~~~-----~~~-~~----~~~ll~~ 257 (499)
|.++.+.-+.- +.. ....+++.- ....+ .+.|+.-++.+.. |.. .. ..-.+.+
T Consensus 222 a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~a 301 (822)
T PRK14574 222 ALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGA 301 (822)
T ss_pred HHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHH
Confidence 99988876531 110 011111110 01122 3344554554442 321 11 1223344
Q ss_pred HhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---------ChhHHHHHHHHHHhC
Q 010837 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---------NVFTWTSMIDGYGKN 328 (499)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~ 328 (499)
+... +...++++.++.+...+.+....+-..+.++|...++.++|..+|+++..+ +......|.-++...
T Consensus 302 L~~r-~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 302 LLVR-HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHh-hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 4444 778899999999999987766778889999999999999999999998542 233356788999999
Q ss_pred CChhHHHHHHHHHHHcCC-----------CC--CHH-HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHH
Q 010837 329 GNPNQALELFCMMQECCV-----------QP--NYV-TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMV 393 (499)
Q Consensus 329 g~~~~a~~~~~~m~~~~~-----------~p--~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 393 (499)
+++++|..+++++.+... .| |-. .+..++..+...|++.+|++.++++.. ..| |..+...+.
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A 457 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALA 457 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 999999999999987311 12 222 344567778899999999999999983 356 889999999
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 394 DLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..+...|.+.+|++.++.... +-+..+....+.++...+++++|..+.+.+.+..|+.
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 999999999999999987665 4456778888889999999999999999999999887
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-15 Score=141.65 Aligned_cols=437 Identities=14% Similarity=0.095 Sum_probs=239.0
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCC--ChHHHHHHHHHHHcCCChhHHHHHhccCCCC--C--hHHHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKP--NTNISIKLLILHLKCGALKYAGQMFDELPQR--T--LSAYN 115 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~ 115 (499)
+.++...+.|...+-..|++..+..+...+......- -...|-.+.++|-..|++++|...|.+..+. + +-.+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 5566677777777777777777777777777654221 2234556677777777777777777665532 2 22334
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHH----------------
Q 010837 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQIL---------------- 178 (499)
Q Consensus 116 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~---------------- 178 (499)
-|...+.+.|+++.+...|+...+. .||.. |..++-..|+..+ ......+.|..+.....
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~-~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSA-KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4566677777777777777776654 34433 2222222221110 11122333333333333
Q ss_pred ---------------------HcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCC-------C------hHhHHHHH
Q 010837 179 ---------------------KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-------N------VICSTSMI 224 (499)
Q Consensus 179 ---------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~------~~~~~~l~ 224 (499)
..+..+.+...|.+...+...|++++|...|+..... + +.+-..+.
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 3333444455555555555555555555555544221 1 11223344
Q ss_pred HHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHH
Q 010837 225 SGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302 (499)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (499)
..+-..++++.|.+.|..+. .|+-+....-+.+..+..+...+|...+....... ..++..+..+...+.+...+..
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcc
Confidence 44445555566666665554 23332222222233444445555555555555432 2244444445555666666666
Q ss_pred HHHHHHhcCC-----CChhHHHHHHHHHHh------------CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc
Q 010837 303 ARRVFDHMQQ-----KNVFTWTSMIDGYGK------------NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 303 a~~~~~~~~~-----~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 365 (499)
|..-|+.+.+ +|+.+.-+|...|.+ .+..++|+.+|.+..... +-|...-+.+.-+++..|+
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccC
Confidence 6554444332 244444444444332 234566777777666542 3455566666666777777
Q ss_pred HHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 010837 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPNSDVWAALLSSCRLHDDVEMANIAA 441 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~ 441 (499)
+.+|..+|..+.+.. .-...+|-.+.++|..+|++..|+++|+.... +.+....+.|.+++.+.|.+.+|.+.+
T Consensus 662 ~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 662 FSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred chHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 777777777776432 12334566777777777777777777766554 356677777777777777777777777
Q ss_pred HHHHhcCCCCCCchhHHHHHH------------------HHhcCChHHHHHHHHHHHhCCCc
Q 010837 442 NEIFKLNANDRPGAYVALSNT------------------LAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 442 ~~~~~~~~~~~~~~~~~l~~~------------------~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
..+....|......|+..+.. ....+..+.|.++|..|...+-.
T Consensus 740 l~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 740 LKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 777777766634334432221 11123456666777776655543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-14 Score=137.95 Aligned_cols=427 Identities=14% Similarity=0.089 Sum_probs=274.1
Q ss_pred CCCcchHHHHHHhh---hCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCC------hH
Q 010837 42 PLTATSLPSALQHY---INSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT------LS 112 (499)
Q Consensus 42 ~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~ 112 (499)
|.++.++..|...- -....+..+...+....... +-++.+.+.|...|.-.|+++.+..+.+.+...+ ..
T Consensus 230 p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~ae 308 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAE 308 (1018)
T ss_pred hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHH
Confidence 44555555543332 33445666777777666654 5688899999999999999999999998877533 33
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHH--HHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHH
Q 010837 113 AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS--MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190 (499)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 190 (499)
+|-.+.++|-..|++++|...|.+..+. .||..++. -+...+ ...++.+.+...|+.+.+.. +-+..+..
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~-----i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMY-----IKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHH-----HHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 6888999999999999999999888765 45554433 455666 88889999999999888764 44555666
Q ss_pred HHHHHHHhCC----ChhHHHHHHHhccCC---ChHhH--------------------------------------HHHHH
Q 010837 191 ALVDSYVKGG----KTSYARIVFDMMLEK---NVICS--------------------------------------TSMIS 225 (499)
Q Consensus 191 ~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~--------------------------------------~~l~~ 225 (499)
.|...|...+ ..+.|..++.+..++ |...| |.+..
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 6666666654 455566665555432 23333 33334
Q ss_pred HHHhCCCHHHHHHHHHhcCC-------CCh-----hhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHH
Q 010837 226 GFMSQGFVEDAEEIFRKTVE-------KDI-----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~-------~~~-----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (499)
.+...|++++|...|+.... +|. .|...-+..+....++.+.|.+.+..+.+..+. -+..|--+...
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~m 539 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCM 539 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHH
Confidence 45555566666655554431 111 122222333333335555666666666554321 11122222211
Q ss_pred HHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHc--------
Q 010837 294 YAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSACG-------- 361 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~-------- 361 (499)
....+...+|...+..... .++..+..+...+.+...+..|.+-|+...+.- ..+|.++...|...|.
T Consensus 540 a~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 540 ARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 2222455566666655543 355666666667777777777776555554321 2345555555555433
Q ss_pred ----ccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCH
Q 010837 362 ----HAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDV 434 (499)
Q Consensus 362 ----~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 434 (499)
..+..++|.++|..+. ...| |...-|.+.-++...|++.+|..+|.+..+ ..+..+|..+.++|...|++
T Consensus 620 n~ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVL---RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHH---hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 1244667888888777 3345 777777788888888888888888888876 23556788888888888888
Q ss_pred HHHHHHHHHHHh-cCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 435 EMANIAANEIFK-LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 435 ~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
-.|++.|+...+ .....++.+...|.+++.+.|++.+|.+.+.....
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 888888887665 44556677888888888888888888887766554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-15 Score=129.21 Aligned_cols=406 Identities=16% Similarity=0.159 Sum_probs=266.6
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHH-HHHHHHHcCCChhHHHHHhccCCC--C------ChHHHHHHHHH
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISI-KLLILHLKCGALKYAGQMFDELPQ--R------TLSAYNYMIAG 120 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~--~------~~~~~~~li~~ 120 (499)
.|.+.|.......+|+..++-+.+...-|+.-... .+...+.+.+++.+|++.+.-... | .+...+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 33444455555566666666666655444443221 234455666677777776653321 1 22345555566
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCC------------Cchh
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK------------ADDV 187 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~ 187 (499)
+.+.|+++.|+.-|+...+. .|+.. .||.+|.+ ..-++.+..++.|..|+..-.. |+..
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~------f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICA------FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhh------eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 78889999999999887664 56655 45555544 4566777788888888754322 2222
Q ss_pred HHHHHH-----HHHHhCC--ChhHHHHHHHhcc----CCChH-------------hHH--------HHHHHHHhCCCHHH
Q 010837 188 LYTALV-----DSYVKGG--KTSYARIVFDMML----EKNVI-------------CST--------SMISGFMSQGFVED 235 (499)
Q Consensus 188 ~~~~l~-----~~~~~~g--~~~~A~~~~~~~~----~~~~~-------------~~~--------~l~~~~~~~g~~~~ 235 (499)
..+.-+ .-+-+.. +-++++-.--++. .++-. .+. .-...|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 222222 2222211 1222222222222 22110 000 11223888999999
Q ss_pred HHHHHHhcCCCChhhHHHH------HHH---------------------------------HhcChhhHHHHHHHHHHHH
Q 010837 236 AEEIFRKTVEKDIVVYNAM------IEG---------------------------------YSISIETARKALEVHCQLI 276 (499)
Q Consensus 236 a~~~~~~~~~~~~~~~~~l------l~~---------------------------------~~~~~~~~~~a~~~~~~~~ 276 (499)
|.++++-..+.|..+-.+. +.. ..-..|+.++|...+++.+
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 9888877654333221111 000 0112367788888888887
Q ss_pred HcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010837 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ---QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353 (499)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 353 (499)
...-......|| +.-.+-+.|++++|+++|-++. ..++.+.-.+...|-...+..+|++++.+.... ++.|+...
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 765444444444 3334677889999999887765 357777777888888889999999998887664 56788899
Q ss_pred HHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHH-hhc
Q 010837 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLSSC-RLH 431 (499)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~-~~~ 431 (499)
+.|...|-+.|+...|.+.+-.--+ -++.+..+..-|..-|....-+++++.+|++..- +|+..-|..++..| .+.
T Consensus 596 skl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 9999999999999999988765441 3344888888888889999999999999998765 79999999998776 467
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
|++++|.+++++..+.-|+. ......|++.+...|-
T Consensus 674 gnyqka~d~yk~~hrkfped-ldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPED-LDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhCccc-hHHHHHHHHHhccccc
Confidence 99999999999999998888 8889999999888774
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-13 Score=119.99 Aligned_cols=377 Identities=10% Similarity=0.024 Sum_probs=220.3
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 121 (499)
|.+..+|..+|.+.++-...+.|.+++++..+...+.+..++|.+|.+-.-.-+-+..-++..+-..||..++|+++.+.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 66778888888888888888888888888877766888888888887655443322233333333368888888888888
Q ss_pred HhCCChh----hHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcc-hhHHHHHHHHH----HcCCC----CchhH
Q 010837 122 LKNGQVE----ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQIL----KCDVK----ADDVL 188 (499)
Q Consensus 122 ~~~g~~~----~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~-~~a~~~~~~~~----~~~~~----~~~~~ 188 (499)
++.|+++ .|++++.+|++-|+.|...+|..+|..+ .+.++. ..+..+..++. -..++ .|...
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f-----~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNF-----KRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHh-----cccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 8888765 4567777888888888888888888877 333333 22333333332 22222 24446
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccCC-----------ChHhHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHH
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLEK-----------NVICSTSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNA 253 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 253 (499)
|...+..|.+..+.+-|.++-.-+... ...-|..+....++....+.-..+|+.|+ -|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 667777777888877777776555332 12345556666777777777777777776 356666666
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC-CCChhHHHHHHHHHHh--CCC
Q 010837 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGK--NGN 330 (499)
Q Consensus 254 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~--~g~ 330 (499)
++++.... +.++-.-+++.++...|..-+.....- .+.++-.-+ .|+...-..+-....+ ..-
T Consensus 439 ~lrA~~v~-~~~e~ipRiw~D~~~~ght~r~~l~ee-------------il~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 439 LLRALDVA-NRLEVIPRIWKDSKEYGHTFRSDLREE-------------ILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHHHhhc-CcchhHHHHHHHHHHhhhhhhHHHHHH-------------HHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 66655444 555566666666666553222211111 111111111 1221111111111111 111
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHH---HHHHHHHhcCCHHHHHH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA---CMVDLLGRAGSLEQALK 407 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~ 407 (499)
.+.....-.+|.+.. ......+.+...+.+.|..++|.+++..+.++..--|.....+ -+++.-.+.++...|..
T Consensus 505 ~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 122223334455433 3444566666667888999999998888865544344333344 55566667788888888
Q ss_pred HHHhCCC--CCCHH-HHHHHHHHHhhcCCHHHHHH
Q 010837 408 FVLEMPE--KPNSD-VWAALLSSCRLHDDVEMANI 439 (499)
Q Consensus 408 ~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~ 439 (499)
.++-+.. .|... .-+.+...|.-...-.+++.
T Consensus 583 ~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 583 VLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred HHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 8887755 12222 33444455544444444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-11 Score=111.77 Aligned_cols=429 Identities=12% Similarity=0.070 Sum_probs=283.6
Q ss_pred HHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC--------CCChH----------
Q 010837 51 ALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP--------QRTLS---------- 112 (499)
Q Consensus 51 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~---------- 112 (499)
|..++++...++.|..+++...+. ++-+..+|..-...=-..|+.+...++.++-. ..+..
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344666777777788887777654 46677777666666666777777666655321 01111
Q ss_pred ---------------------------HHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC-hhhHHHHhhhccccccCCc
Q 010837 113 ---------------------------AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD-GYTFSMILKASTCCRSNVP 164 (499)
Q Consensus 113 ---------------------------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~ 164 (499)
+|+.-...|.+.+.++-|..+|...++. .|. ...|..+...- ...
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~e-----k~h 563 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFE-----KSH 563 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHH-----Hhc
Confidence 3444444455555555555666555543 222 23333333222 445
Q ss_pred CcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHH
Q 010837 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
|..+....+++.....- +-....|.....-+...||...|..++....+. +...|-.-+.....+.+++.|..+|.
T Consensus 564 gt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred CcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 55666666666666542 333444555555666677777777777666442 45667777777777777777777777
Q ss_pred hcC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-Chh
Q 010837 242 KTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVF 316 (499)
Q Consensus 242 ~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~ 316 (499)
+.. .+....|.--+..- .-.+..++|.+++++.++.- +.-...|-.+...+-+.++++.|...|..-.+ | .+.
T Consensus 643 kar~~sgTeRv~mKs~~~e-r~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 643 KARSISGTERVWMKSANLE-RYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred HHhccCCcchhhHHHhHHH-HHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 665 34444333222211 11266777777777766642 11234566666777777777777777766554 3 445
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 396 (499)
.|-.+...--+.|.+-+|..++++..-.+ +-+...|...|..-.+.|+.+.|..++.+..++ ++.+...|..-|...
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLE 797 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhc
Confidence 66666666667777888888888776653 446667777777777888888888887777743 344566677777777
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
.+.++-......+++... |......+...+....++++|.+.|.+..+.+++. ..+|..+...+.+.|.-++-.+++
T Consensus 798 ~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~-GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN-GDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred cCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc-chHHHHHHHHHHHhCCHHHHHHHH
Confidence 777776666666666654 66677777888888999999999999999999998 999999999999999999999999
Q ss_pred HHHHhCCCccCccccccccCCC
Q 010837 477 EKMKLRGVLKDTGCSWVGTESG 498 (499)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
+++.. ..|.-|..|+.+.+.
T Consensus 875 ~~c~~--~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 875 KKCET--AEPTHGELWQAVSKD 894 (913)
T ss_pred HHHhc--cCCCCCcHHHHHhhh
Confidence 98866 678888899877653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-14 Score=131.36 Aligned_cols=274 Identities=13% Similarity=0.040 Sum_probs=222.3
Q ss_pred CChhHHHHHHHhccCC--C-hHhHHHHHHHHHhCCCHHHHHHHHHhcCC--C----ChhhHHHHHHHHhcChhhHHHHHH
Q 010837 200 GKTSYARIVFDMMLEK--N-VICSTSMISGFMSQGFVEDAEEIFRKTVE--K----DIVVYNAMIEGYSISIETARKALE 270 (499)
Q Consensus 200 g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~ll~~~~~~~~~~~~a~~ 270 (499)
-+..+|...|..+.+. | ......+..+|...+++++|.++|+.+.+ | +...|.+.+-.+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~-----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE-----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh-----HHHH
Confidence 3578899999887553 3 35667788999999999999999999873 2 678888888776433 3444
Q ss_pred HHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 010837 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347 (499)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (499)
++.+-+-..-+-.+.+|.++..+|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.... +.
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 4433322233456889999999999999999999999999874 457888888888899999999999998865 33
Q ss_pred CC-HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHH
Q 010837 348 PN-YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAA 423 (499)
Q Consensus 348 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ 423 (499)
|. ...|-.+...|.+.++++.|+-.|+.+. .+.| +.++...+...+.+.|+.|+|+++++++.. +.|+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 32 3356667788999999999999999998 6778 677778888889999999999999999876 445555555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 484 (499)
.+..+...+++++|+..++++.+.-|+. ...|..++..|.+.|+.+.|+.-|--+.+...
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 6677888899999999999999999988 89999999999999999999988877766443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-16 Score=138.93 Aligned_cols=250 Identities=19% Similarity=0.210 Sum_probs=100.0
Q ss_pred HHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCCh
Q 010837 225 SGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300 (499)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 300 (499)
..+.+.|++++|++++++.. .|+...|-.++..++...++.+.|...++.+...+.. ++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 33444444444444443221 1233334344444444445555666666655554433 44455555555 577888
Q ss_pred HHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 301 DDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 301 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
++|..++....+ ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888877766543 455667777777888888888888888876532 34566677777788888888888888888888
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc
Q 010837 378 RDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454 (499)
Q Consensus 378 ~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (499)
+ ..| +......++..+...|+.+++.++++.... +.|...+..+..++...|+.++|...+++..+..|.+ +.
T Consensus 174 ~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-~~ 249 (280)
T PF13429_consen 174 E---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-PL 249 (280)
T ss_dssp H---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HH
T ss_pred H---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc-cc
Confidence 3 356 466777888888888888887777666554 2345567778888888888888888888888888877 78
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+...++.++...|+.++|.++.++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 88888888888888888888877654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-12 Score=112.87 Aligned_cols=248 Identities=15% Similarity=0.098 Sum_probs=183.7
Q ss_pred HHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccC--CCchhHHHHHHHHHhcCCh
Q 010837 226 GFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF--EDVKLGSALVDMYAKCGKI 300 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 300 (499)
++-...+.+++..-.+... -|+..-+-+.+.++.....++++|+.+|+++.++.+- -|..+|..++ |.+..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 3444444555544444333 2344444555555555666777777777777766321 1344555544 3333221
Q ss_pred H--H-HHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 301 D--D-ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 301 ~--~-a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
. - |..+ -.+.+--+.|+.++.+-|.-.++.++|...|++..+.+ +-....|+.+.+-|...++...|.+-++++.
T Consensus 314 kLs~LA~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 1 1 1111 12223345566777778888899999999999998853 3345678888889999999999999999999
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc
Q 010837 378 RDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454 (499)
Q Consensus 378 ~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (499)
.+.| |-..|-.|..+|.-.+...-|+-.|++... +.|...|.+|..+|.+.++.++|+..|.+++..+-.. ..
T Consensus 392 ---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~ 467 (559)
T KOG1155|consen 392 ---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GS 467 (559)
T ss_pred ---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hH
Confidence 6677 889999999999999999999999999987 5678999999999999999999999999999988765 78
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.+..|+..|.+.++.++|.+.+++.++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999988765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-11 Score=109.39 Aligned_cols=280 Identities=14% Similarity=0.124 Sum_probs=190.0
Q ss_pred HHHHHhCCChhHHHHHHHhccCC----ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCC------ChhhHHHHHHHHhcCh
Q 010837 193 VDSYVKGGKTSYARIVFDMMLEK----NVICSTSMISGFMSQGFVEDAEEIFRKTVEK------DIVVYNAMIEGYSISI 262 (499)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~ll~~~~~~~ 262 (499)
..++-...+.+++.+-.+..... +...-+....+.....++++|+.+|+++.+. |..+|..++-.-...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~- 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK- 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh-
Confidence 34454555555555544444332 2233334444556667777777777777633 445565555443211
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
..+..+.+-.-.--+--+.|...+.+.|.-.++.++|...|++..+- ....|+.|..-|....+...|++-|+
T Consensus 313 ----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 ----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred ----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 22222222222222234556667778888888888999988888763 44678888888888888889999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CC
Q 010837 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KP 416 (499)
Q Consensus 340 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 416 (499)
...+-+ +-|-..|-.|.++|.-.+...=|.-+|++.. .++| |...|.+|.++|.+.++.++|++-|.+... ..
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 888752 4577788888888888888888888888887 5677 788889999999999999999998888776 34
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC-----CCC-CCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLN-----AND-RPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+...+..|.+.|-+.++.++|...+++.++.. ..+ ...+..-|...+.+.+++++|.........
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 45788888888888888888888888777622 222 123334466777788888888776555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-10 Score=104.89 Aligned_cols=418 Identities=13% Similarity=0.083 Sum_probs=282.9
Q ss_pred CCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCChhhHHHH
Q 010837 57 NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQVEESLSL 133 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 133 (499)
...+.+.|.-++....+.- +.+.. |.-+|++..-++.|..+++...+ .+...|-+-...--.+|+.+...++
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3345555666666655542 33333 33456666777778877776653 4667777666666678888888777
Q ss_pred HHH----HHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhCCChhHHHH
Q 010837 134 VRK----LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD--DVLYTALVDSYVKGGKTSYARI 207 (499)
Q Consensus 134 ~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 207 (499)
+.+ +...|+..+...|..=-..| ...|..-.+..+....+..|+.-. -.||..-.+.|.+.+.++-|..
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~-----e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEAC-----EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHH-----hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 765 34457788877777777777 666777777788877777776543 3477777888888888888888
Q ss_pred HHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhh-HHHHHHHHhcChhhHHHHHHHHHHHHHcccC
Q 010837 208 VFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVV-YNAMIEGYSISIETARKALEVHCQLIKNVFF 281 (499)
Q Consensus 208 ~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 281 (499)
+|....+- +...|...+..--..|..++...+|++.+ -|.... |.......-.. |+...|..++..+.+....
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-gdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-GDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-CCcHHHHHHHHHHHHhCCC
Confidence 88777653 45667666666666777888888887776 233333 33333333333 7777888888888776654
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
+..+|-.-+..-.....++.|..+|.+... ++...|..-+....-.++.++|.+++++..+. ++.-...|..+.+.
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQI 694 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHH
Confidence 566777777778888888888888877654 55566665555555667788888888877764 23333466677777
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHH
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
+.+.++++.|...|..-. ..-| .+..|-.|.+.=-+.|..-+|..++++..- +.+...|...|+.-.+.|+.+.
T Consensus 695 ~e~~~~ie~aR~aY~~G~---k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGT---KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHhcc---ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHH
Confidence 777788888887776655 2234 455666777766677788888888877665 3466778888888888888888
Q ss_pred HHHHHHHHHhcCCCC-----------------------------CCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 437 ANIAANEIFKLNAND-----------------------------RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 437 a~~~~~~~~~~~~~~-----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
|..+..++++.-|.. ++.....+...+....+++.|.+.|.+..+. .||
T Consensus 772 a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d 849 (913)
T KOG0495|consen 772 AELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPD 849 (913)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCc
Confidence 777766665432221 4566667777788888888888888887764 455
Q ss_pred ccccc
Q 010837 488 TGCSW 492 (499)
Q Consensus 488 ~~~~~ 492 (499)
-|-.|
T Consensus 850 ~GD~w 854 (913)
T KOG0495|consen 850 NGDAW 854 (913)
T ss_pred cchHH
Confidence 44444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.5e-11 Score=104.82 Aligned_cols=420 Identities=12% Similarity=0.083 Sum_probs=295.5
Q ss_pred CCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC--CChH-HHHHHHHHHHhCCChhhHHHH
Q 010837 57 NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLS-AYNYMIAGYLKNGQVEESLSL 133 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~ 133 (499)
..+++..|..+|+..+.-. .-+...|-..+.+=.++..+..|..+++.... |.+. .|--.+..=-..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3456677888888887766 45667777777777888888888888887653 3332 344444444456888889999
Q ss_pred HHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcc
Q 010837 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213 (499)
Q Consensus 134 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (499)
|+...+. .|+...|++.++.= ......+.|..+++..+-. .|++..|-.....-.++|+...|.++|+...
T Consensus 164 ferW~~w--~P~eqaW~sfI~fE-----lRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFE-----LRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHH-----HHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9888764 88888888888876 6777788888888887653 4888888888888888898888888888775
Q ss_pred CC------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCC--CC---hhhHHH---HHHHHhcChhhHHHHHH-----HHHH
Q 010837 214 EK------NVICSTSMISGFMSQGFVEDAEEIFRKTVE--KD---IVVYNA---MIEGYSISIETARKALE-----VHCQ 274 (499)
Q Consensus 214 ~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~---ll~~~~~~~~~~~~a~~-----~~~~ 274 (499)
+. +...+.++..-=.++..++.|.-+|+-..+ |. ...|.. .=..+....| .+.++- -++.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g-IEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG-IEDAIVGKRKFQYEK 313 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh-hHHHHhhhhhhHHHH
Confidence 42 233455555555566777888777765542 21 222222 2222222211 112221 2333
Q ss_pred HHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--CCh---hHHHHHHH-----H---HHhCCChhHHHHHHHHH
Q 010837 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNV---FTWTSMID-----G---YGKNGNPNQALELFCMM 341 (499)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~~~~~l~~-----~---~~~~g~~~~a~~~~~~m 341 (499)
+.+.++ -|-.+|--.++.-...|+.+...++|+++.. |.. ..|.-.|- + -....+++.+.++|+..
T Consensus 314 ~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 314 EVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333332 3455666677777788999999999998874 211 12222211 1 12467899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHH----cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C
Q 010837 342 QECCVQPNYVTFLGALSAC----GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--K 415 (499)
Q Consensus 342 ~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 415 (499)
.+. ++-..+||.-+--.| .++.++..|.+++.... |.-|...++...|..=.+.+.+|.+..++++..+ +
T Consensus 393 l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 393 LDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred Hhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 883 455566776654444 46789999999999988 8899989999999998999999999999999887 4
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-CCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccccc
Q 010837 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN-DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVG 494 (499)
Q Consensus 416 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 494 (499)
-+..+|......-...|+.+.|..+|+-+++...- .....|...|..-...|.++.|..+++++.+..-... +||.
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k---vWis 545 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK---VWIS 545 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch---HHHh
Confidence 46678888887778899999999999998875432 2145678888888899999999999999988654443 4554
Q ss_pred c
Q 010837 495 T 495 (499)
Q Consensus 495 ~ 495 (499)
+
T Consensus 546 F 546 (677)
T KOG1915|consen 546 F 546 (677)
T ss_pred H
Confidence 3
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.1e-12 Score=117.90 Aligned_cols=274 Identities=10% Similarity=0.057 Sum_probs=181.2
Q ss_pred CCChhHHHHHHHhccCC--ChHh-HHHHHHHHHhCCCHHHHHHHHHhcCC--CChhhHHHHH-HHHhcChhhHHHHHHHH
Q 010837 199 GGKTSYARIVFDMMLEK--NVIC-STSMISGFMSQGFVEDAEEIFRKTVE--KDIVVYNAMI-EGYSISIETARKALEVH 272 (499)
Q Consensus 199 ~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll-~~~~~~~~~~~~a~~~~ 272 (499)
.|+++.|++.+....+. +... |........+.|+++.|.+.+.++.+ |+...+..+. ..+....|+.+.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 57888888777765443 2233 33334445778888888888877763 3333222212 22333447777888888
Q ss_pred HHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---Chh--------HHHHHHHHHHhCCChhHHHHHHHHH
Q 010837 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVF--------TWTSMIDGYGKNGNPNQALELFCMM 341 (499)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~--------~~~~l~~~~~~~g~~~~a~~~~~~m 341 (499)
+.+.+..+ -++.....+...|.+.|++++|.+++..+.+. +.. .|..++.......+.+...++|+.+
T Consensus 177 ~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 88877663 25667777888888888888888888877652 111 2333343334445556666666665
Q ss_pred HHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHH
Q 010837 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP-NSD 419 (499)
Q Consensus 342 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~ 419 (499)
-+. .+.+......+..++...|+.++|.+++++..+ ..|+... .++.+....++.+++++..+...+ .| |..
T Consensus 256 p~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 256 SRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred CHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHH
Confidence 433 345667777788888888888888888888773 2444422 223333455888888888877766 34 455
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.+..+...|.+.+++++|.+.|+.+.+..|++ ..+..+..++.+.|+.++|.+++++-..
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~--~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDA--YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67778888888888888888888888876654 6677888888888888888888876543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=121.97 Aligned_cols=278 Identities=13% Similarity=0.044 Sum_probs=215.2
Q ss_pred chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCC------ChHhHHHHHHHHHhCCCHHHHHHHH
Q 010837 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK------NVICSTSMISGFMSQGFVEDAEEIF 240 (499)
Q Consensus 167 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 240 (499)
...|...|..+.+ .+.-+..+...+..+|...+++++|+++|+.+.+. +...|.+.+.-+-+.=...---+-+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455556655322 23334466777889999999999999999999653 7788888887654332222111111
Q ss_pred HhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHH
Q 010837 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320 (499)
Q Consensus 241 ~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 320 (499)
-.+-+..+.+|.++-++++-. ++.+.|+..|++.++... -...+|+.+..-+.....+|.|...|+.....|+..|++
T Consensus 414 i~~~~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnA 491 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNA 491 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHH
Confidence 222244567898888888666 888899999999988543 157788989999999999999999999999877766554
Q ss_pred ---HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHH
Q 010837 321 ---MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLL 396 (499)
Q Consensus 321 ---l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 396 (499)
+...|.+.++++.|+-.|++..+-+ +-+.+....+...+.+.|+.++|+++++++. .+.| |+..--.-+..+
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRASIL 567 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHHHHH
Confidence 6788999999999999999998843 3355667777788889999999999999998 5566 555555566778
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 397 GRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
...+++++|+..++++++ +.+...+..+...|.+.|+.+.|+.-|--+.+.+|+.
T Consensus 568 ~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 889999999999999988 4456788889999999999999999999999988877
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-11 Score=111.83 Aligned_cols=277 Identities=12% Similarity=0.066 Sum_probs=180.1
Q ss_pred CCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHH--HHHHHHHhCCC
Q 010837 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT--ALVDSYVKGGK 201 (499)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~ 201 (499)
.|++++|.+.+....+..-.| ...|.....+. ...|+.+.+...+..+.+. .|+...+. .....+...|+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA-----~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAA-----QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHH-----HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCC
Confidence 577777776666554432111 11222222222 4555666666666665542 33332221 22445566666
Q ss_pred hhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHc
Q 010837 202 TSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278 (499)
Q Consensus 202 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 278 (499)
++.|.+.++++.+. +......+...|.+.|++++|.+++..+. +.
T Consensus 169 ~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~--------------------------------k~ 216 (398)
T PRK10747 169 NHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMA--------------------------------KA 216 (398)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------------------------Hc
Confidence 66666666665432 44455555666666666666665555554 33
Q ss_pred ccCCCc-------hhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010837 279 VFFEDV-------KLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348 (499)
Q Consensus 279 ~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 348 (499)
+..++. ..|..++.......+.+...++++.+.+ .++.....+...+...|+.++|.+++++..+. +|
T Consensus 217 ~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~ 294 (398)
T PRK10747 217 HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY 294 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 222111 1122223333334455666667776653 47778888999999999999999999998873 55
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 010837 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLS 426 (499)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~ 426 (499)
+.... ++.+....++.+++.+..+...++ .| |...+..+...+.+.+++++|.+.|+...+ .|+..++..+..
T Consensus 295 ~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~ 369 (398)
T PRK10747 295 DERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLAD 369 (398)
T ss_pred CHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 55322 334445669999999999998843 45 667788999999999999999999999888 699999999999
Q ss_pred HHhhcCCHHHHHHHHHHHHhc
Q 010837 427 SCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~ 447 (499)
.+.+.|+.++|.+++++....
T Consensus 370 ~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999988764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-11 Score=111.88 Aligned_cols=144 Identities=12% Similarity=0.024 Sum_probs=88.6
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHcccCcHHHHHHHHH
Q 010837 301 DDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT---FLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 301 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
+...+.++...+ .+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 334444444442 36677777777778888888888888877764 333331 1111112234466677777777
Q ss_pred HchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh--CCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE--MPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
...+...-.|+.....++...+.+.|++++|.+.|+. ..+ .|+...+..+...+.+.|+.++|.+++++...
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6663322222214556777777777777777777773 333 57777777777777777777777777777644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-11 Score=116.78 Aligned_cols=312 Identities=13% Similarity=0.109 Sum_probs=204.0
Q ss_pred CcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhc---cCCChHhHHHHHHHHHhCCCHHHHHHHHH
Q 010837 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM---LEKNVICSTSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
|+.+.|..++.++++.. +.....|.+|...|-..|+.+++...+-.. ...|...|..+.....+.|+++.|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 56666666666666554 445556666666666666666666544332 22355666666666666677777766666
Q ss_pred hcCC--CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhH----HHHHHHHHhcCChHHHHHHHHhcCC---
Q 010837 242 KTVE--KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG----SALVDMYAKCGKIDDARRVFDHMQQ--- 312 (499)
Q Consensus 242 ~~~~--~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~--- 312 (499)
+.++ |+..-+..--..+++..|+...|..-|.++....++.|..-. ...++.+...++-+.|.+.++....
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 6652 322222222222333335555666666666665442232222 2234556666666777777766553
Q ss_pred --CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHHHccc
Q 010837 313 --KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV---------------------------QPNYVTFLGALSACGHA 363 (499)
Q Consensus 313 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---------------------------~p~~~~~~~ll~~~~~~ 363 (499)
-+...++.++..+.+...++.|......+..... .++...+ .+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcc
Confidence 1344567777777777778888777777665211 2222221 222233444
Q ss_pred CcHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHhhcCCHHHHH
Q 010837 364 GLVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPEK---PNSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
+..+....+..... ...+.| +...|.-+.++|...|++.+|+++|..+... .+...|-.+..+|...|.+++|.
T Consensus 391 ~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 44444444444444 335444 6778899999999999999999999999883 35668999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+.++.++...|.. ..+-..|...+.+.|+.++|.+++..+.
T Consensus 470 e~y~kvl~~~p~~-~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 470 EFYEKVLILAPDN-LDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcCCCc-hhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999988 8889999999999999999999999876
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-11 Score=109.74 Aligned_cols=433 Identities=12% Similarity=0.056 Sum_probs=301.2
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhcc--CCCCChHHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE--LPQRTLSAYNYMI 118 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~li 118 (499)
+..+.+-+..+++-+....++..|.-+-++....+..|+ .---+.+++.-.|+++.|..+... +.+.|..+.....
T Consensus 12 d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~ 89 (611)
T KOG1173|consen 12 DELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAA 89 (611)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 345667788888888888899999999998877764444 444567888888999999888765 4468888988899
Q ss_pred HHHHhCCChhhHHHHHH----HHHHc---------CCCCChhh----HHHHhhhccccc--cCCcCcchhHHHHHHHHHH
Q 010837 119 AGYLKNGQVEESLSLVR----KLVSS---------GERPDGYT----FSMILKASTCCR--SNVPLPRNLGRMVHAQILK 179 (499)
Q Consensus 119 ~~~~~~g~~~~a~~~~~----~m~~~---------g~~p~~~~----~~~ll~~~~~~~--~~~~~~~~~a~~~~~~~~~ 179 (499)
.++.+..++++|+.++. .+..- -+.+|..- -+.-.+.|...+ -......+.|...+.+...
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 99999999999999998 32110 01111111 111112221000 0233445566666665544
Q ss_pred cCCCCchhHHHH---HHHHHHhCC------------------ChhHHHHHHHhc----cC----------------CChH
Q 010837 180 CDVKADDVLYTA---LVDSYVKGG------------------KTSYARIVFDMM----LE----------------KNVI 218 (499)
Q Consensus 180 ~~~~~~~~~~~~---l~~~~~~~g------------------~~~~A~~~~~~~----~~----------------~~~~ 218 (499)
. |..-|.. |+....-.. +.+....+|+.. .+ .+..
T Consensus 170 ~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~d 245 (611)
T KOG1173|consen 170 A----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLD 245 (611)
T ss_pred c----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHH
Confidence 3 3333322 222111110 111111222211 00 1233
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHH
Q 010837 219 CSTSMISGFMSQGFVEDAEEIFRKTVEK---DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295 (499)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (499)
.......-+...+++.+..++++...+. ....+..-|.++... |+..+-..+-..+.+.- +-.+.+|-++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el-~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYEL-GKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHh-cccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 4444555688899999999999988743 444556666666555 44445555555666543 346778999999999
Q ss_pred hcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHH
Q 010837 296 KCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372 (499)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 372 (499)
..|+.++|++.|.+...- -...|-.+..+|+-.|..|+|+..|...-+. ++-...-+-.+.--|.+.++.+.|.++
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 999999999999987653 3458999999999999999999999877653 121222233344557888999999999
Q ss_pred HHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010837 373 FESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--------KP-NSDVWAALLSSCRLHDDVEMANIAAN 442 (499)
Q Consensus 373 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (499)
|.... ++.| |+.+.+-+.-.....+.+.+|..+|+.... ++ -..+++.|..+|.+.+.+++|+..++
T Consensus 403 f~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 403 FKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 99988 7777 788888888888889999999999988764 12 45678999999999999999999999
Q ss_pred HHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCc
Q 010837 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDT 488 (499)
Q Consensus 443 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 488 (499)
+.+...+.. ..++..++-.|...|+++.|...|.+... +.|+-
T Consensus 480 ~aL~l~~k~-~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 480 KALLLSPKD-ASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred HHHHcCCCc-hhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 999999998 99999999999999999999999987643 55553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-10 Score=103.73 Aligned_cols=397 Identities=14% Similarity=0.075 Sum_probs=249.0
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCCCCC-hHHHHHHHHHHHcCCChhHHHHHhccCCCCChH---HHHHHHHHHHhCC
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGVKPN-TNISIKLLILHLKCGALKYAGQMFDELPQRTLS---AYNYMIAGYLKNG 125 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g 125 (499)
....-|-+.|.+++|.+.+.+.++.. |+ +.-|......|...|+|+++.+.-....+-++. ++..-.+++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 34456678899999999999998874 66 788899999999999999998877766654444 4444455666667
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHH--------HHHHH-cC--CCCchhHHHHHHH
Q 010837 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH--------AQILK-CD--VKADDVLYTALVD 194 (499)
Q Consensus 126 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~--------~~~~~-~~--~~~~~~~~~~l~~ 194 (499)
++++|+.=+. ...++..+ ......-.+.+++ .+-.+ .+ +-|+....++...
T Consensus 198 ~~~eal~D~t-------------v~ci~~~F-----~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 198 KFDEALFDVT-------------VLCILEGF-----QNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred cHHHHHHhhh-------------HHHHhhhc-----ccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 7766654322 22223222 1111111222222 11111 12 1233332222222
Q ss_pred HHHhCCChhHHHHHHHhccCCChHhHHHHHHHH----Hh-CCCHHHHHHHHHhcC-----CC-----Chhh----HHHHH
Q 010837 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGF----MS-QGFVEDAEEIFRKTV-----EK-----DIVV----YNAMI 255 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~----~~-~g~~~~a~~~~~~~~-----~~-----~~~~----~~~ll 255 (499)
.+... +. ..+..+...+...+..++ .. ...+.+|.+.+.+-. .+ |... -..++
T Consensus 260 sF~~~--~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 260 SFHAD--PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred hcccc--cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 22110 00 000000001111111111 10 012333333332211 01 1111 11111
Q ss_pred HH-HhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCh
Q 010837 256 EG-YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNP 331 (499)
Q Consensus 256 ~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 331 (499)
.+ +--..|+.-.+..-|+..++....++. .|-.+..+|....+.++.+..|++..+ .|+.+|..-.+.+.-.+++
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHH
Confidence 11 111236666888888888887665443 255566679999999999999998875 3667888878888888899
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 332 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
++|..=|++.++.. +-+...|..+..+..+.+++++++..|++.+++ ++.-+.+|+.....+...+++++|.+.|+.
T Consensus 411 e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 411 EEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 99999999988742 334567777777777889999999999999854 344678899999999999999999999998
Q ss_pred CCC-CCC-------HHH--HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 412 MPE-KPN-------SDV--WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 412 ~~~-~~~-------~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
..+ .|. ..+ -..++-. .-.+++..|+.+++++++.+|+- ...|..|+..-.+.|+.++|+++|++-.
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkc-e~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKC-EQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchH-HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 876 333 222 2222222 23489999999999999999988 8899999999999999999999998754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=123.97 Aligned_cols=248 Identities=15% Similarity=0.162 Sum_probs=110.5
Q ss_pred HHHHHHHhCCChhHHHHHHHhc-cC----CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHhcCh
Q 010837 191 ALVDSYVKGGKTSYARIVFDMM-LE----KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD---IVVYNAMIEGYSISI 262 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~ 262 (499)
.+...+.+.|++++|.++++.. .. .+...|..+...+...++++.|.+.++++...+ ...+..++.. . ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~-~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L-QD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-cc
Confidence 4577788999999999999543 22 256667777778888899999999999988432 3344444444 3 33
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----CChhHHHHHHHHHHhCCChhHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----KNVFTWTSMIDGYGKNGNPNQALEL 337 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~ 337 (499)
+++++|..+.....+.. +++..+..++..+.+.++++++..+++.+.+ .+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77888888887766543 4566677888889999999999999988652 4677888999999999999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--
Q 010837 338 FCMMQECCVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-- 414 (499)
Q Consensus 338 ~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 414 (499)
+++..+. .| |......++..+...|+.+++..+++...+.. +.+...+..+..+|...|+.++|+.+|++...
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999985 45 56778889999999999999999999888442 34667788999999999999999999999877
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 415 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
+.|......+..++...|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 34788888999999999999999999887654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-11 Score=102.91 Aligned_cols=229 Identities=12% Similarity=0.109 Sum_probs=154.3
Q ss_pred HHHHHHHhCCChhHHHHHHHhccCCC---hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHH
Q 010837 191 ALVDSYVKGGKTSYARIVFDMMLEKN---VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARK 267 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 267 (499)
.|..-|...|-+|.|+.+|..+.+.+ ......|+..|-...+|++|++.-+++.+.+..+++..|..++
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy-------- 183 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY-------- 183 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH--------
Confidence 35556677777777777777766532 3345556666777777777766666665555445555444432
Q ss_pred HHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
.-|...+....+++.|..++.+..+. .+..--.+.+.....|+++.|.+.|+...++
T Consensus 184 --------------------CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 184 --------------------CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred --------------------HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 23445555667788888888887653 3334445667888899999999999999887
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHH
Q 010837 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV-LEMPEKPNSDVWAA 423 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~ 423 (499)
+..--..+...|..+|.+.|+.++....+.++.+. .+....-..+.+.-....-.+.|..++ +.+..+|+...+..
T Consensus 244 n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r 320 (389)
T COG2956 244 NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHR 320 (389)
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHH
Confidence 65555567888899999999999999999988833 344444455555544555556665554 45555899999999
Q ss_pred HHHHHhh---cCCHHHHHHHHHHHHhcCCC
Q 010837 424 LLSSCRL---HDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 424 l~~~~~~---~~~~~~a~~~~~~~~~~~~~ 450 (499)
++..-.. .|..++-...++.|+.....
T Consensus 321 l~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 321 LMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred HHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 9987643 34566667777777764433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.2e-11 Score=105.39 Aligned_cols=374 Identities=13% Similarity=0.133 Sum_probs=251.5
Q ss_pred hhhCCCChhhHHHHHHHHHHhCCCCC----hHHHHHHHHHHHcCCChhHHHHHhccCCC--CChHHHHHHHHHHHhCCCh
Q 010837 54 HYINSDTPFYGLKIHAHITKTGVKPN----TNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNYMIAGYLKNGQV 127 (499)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~ 127 (499)
.+.+.+++..|+.+++..+.+-...+ ..+.+.+.-.+.+.|.++.|+..|+...+ |+..+--.|+-++..-|+.
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ 325 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDA 325 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcH
Confidence 34566788899999988777632222 34455566667899999999999998764 6766544455566667899
Q ss_pred hhHHHHHHHHHHcCCCCC------------hhhHHHHhhhccccccCCcCcchhHHHHH---HHHHHcCCCCchh-----
Q 010837 128 EESLSLVRKLVSSGERPD------------GYTFSMILKASTCCRSNVPLPRNLGRMVH---AQILKCDVKADDV----- 187 (499)
Q Consensus 128 ~~a~~~~~~m~~~g~~p~------------~~~~~~ll~~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~----- 187 (499)
++..+.|.+|+.-...|| ....+..|..=. .+.....+...|+... ..++.--+.|+-.
T Consensus 326 ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~-lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dw 404 (840)
T KOG2003|consen 326 EKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH-LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDW 404 (840)
T ss_pred HHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH-HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHH
Confidence 999999999986532222 222222221100 0000000011111111 1111111112110
Q ss_pred --------HH--------HHHHHHHHhCCChhHHHHHHHhccCCChHhHHH----H-----H------------------
Q 010837 188 --------LY--------TALVDSYVKGGKTSYARIVFDMMLEKNVICSTS----M-----I------------------ 224 (499)
Q Consensus 188 --------~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----l-----~------------------ 224 (499)
.+ -.-..-+.+.|+++.|+++++-+.++|..+-.+ | +
T Consensus 405 cle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln 484 (840)
T KOG2003|consen 405 CLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN 484 (840)
T ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc
Confidence 01 112346889999999999988876543211110 0 0
Q ss_pred -------------HHHHhCCCHHHHHHHHHhcCCCChhhHHHHHH--HHhcChhhHHHHHHHHHHHHHcccCCCchhHHH
Q 010837 225 -------------SGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289 (499)
Q Consensus 225 -------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (499)
......|++++|.+.|++....|...-.++.. .-+...|..++|++.|-.+... +..+..+...
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~q 563 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQ 563 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 00233688999999999988776654333322 1234458888999888766543 2235667777
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcH
Q 010837 290 LVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366 (499)
Q Consensus 290 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 366 (499)
+...|-...+...|++++-+... .|+.....|...|-+.|+-.+|...+-+--.. ++.+..|..-|...|....-+
T Consensus 564 ianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHH
Confidence 88899999999999999988764 58889999999999999999999887665443 577888888888889998999
Q ss_pred HHHHHHHHHchHhcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC
Q 010837 367 DKGREIFESMERDYSMKPKMEHYACMVDL-LGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD 433 (499)
Q Consensus 367 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 433 (499)
++++.+|++.. -++|+..-|..++.. +.+.|++.+|.++++.+.. +.|..+...|++.|...|-
T Consensus 643 ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 643 EKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999887 789999999887765 4578999999999999877 4678888889988877663
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-10 Score=108.84 Aligned_cols=334 Identities=12% Similarity=0.078 Sum_probs=197.9
Q ss_pred HhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhcc---CCCCChHHHHHHHHHHHhCCChhh
Q 010837 53 QHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE---LPQRTLSAYNYMIAGYLKNGQVEE 129 (499)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~ 129 (499)
..+...|+.++|.+++.++++.. +.....|..|...|-..|+.+++...+-. +.+.|...|-.+.....+.|++++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33344599999999999999987 67888999999999999999999887654 345677889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHH----HHHHHHHHhCCChhH
Q 010837 130 SLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY----TALVDSYVKGGKTSY 204 (499)
Q Consensus 130 a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~ 204 (499)
|.-+|.+.++. .|+.. .+---...| .+.|+...|..-+.++....-+.|..-+ ..+++.+...++-+.
T Consensus 226 A~~cy~rAI~~--~p~n~~~~~ers~L~-----~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 226 ARYCYSRAIQA--NPSNWELIYERSSLY-----QKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred HHHHHHHHHhc--CCcchHHHHHHHHHH-----HHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999886 34332 222223334 6778888888888888776532233222 334566777777788
Q ss_pred HHHHHHhccCC-----ChHhHHHHHHHHHhCCCHHHHHHHHHhcCC----CChhhHHHH------HHHHhcChhhHHHHH
Q 010837 205 ARIVFDMMLEK-----NVICSTSMISGFMSQGFVEDAEEIFRKTVE----KDIVVYNAM------IEGYSISIETARKAL 269 (499)
Q Consensus 205 A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l------l~~~~~~~~~~~~a~ 269 (499)
|.+.++..... +...++.++..+.+...++.|......+.. +|...+.+- ...++..
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~-------- 370 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV-------- 370 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC--------
Confidence 88888777552 445788888889999999988887766542 222111000 0000000
Q ss_pred HHHHHHHHcccCCCchhHHHHHHHHHhcC--ChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010837 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCG--KIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343 (499)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (499)
..+..++..+. .++-++.+.. ...+++..|-.... .++..|.-+..+|...|++.+|+.+|..+..
T Consensus 371 -------~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 371 -------GKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred -------CCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 01122222221 1111222222 22222222211111 1334455555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 344 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
...--+...|-.+..+|...|..++|.+.|+.+. ...| +...--.|...+.+.|+.++|.+.++.+.
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl---~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL---ILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 4333344455555555555555555555555555 2334 33344445555555555555555555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-09 Score=97.20 Aligned_cols=402 Identities=13% Similarity=0.115 Sum_probs=295.9
Q ss_pred CCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHh
Q 010837 77 KPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153 (499)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 153 (499)
..+...|-...+.=...+++..|.++|+.... .++..|--.+..=.++.++..|..+++.....=...|..=|..+.
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34555555555555567888899999998874 567778888888899999999999999988742222322222222
Q ss_pred hhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhc--cCCChHhHHHHHHHHHhCC
Q 010837 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFMSQG 231 (499)
Q Consensus 154 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g 231 (499)
-- ...|+...|.++|....+ ..|+...|++.|+.-.+...++.|..++++. ..|++.+|-....-=.+.|
T Consensus 150 mE------E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 150 ME------EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HH------HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcC
Confidence 11 566888999999988764 5899999999999999999999999999996 4589999999999999999
Q ss_pred CHHHHHHHHHhcCC--CChhhHHHHHHHHh---cChhhHHHHHHHHHHHHHcccCCC-chhHHHHHHHHHhcCChHHHHH
Q 010837 232 FVEDAEEIFRKTVE--KDIVVYNAMIEGYS---ISIETARKALEVHCQLIKNVFFED-VKLGSALVDMYAKCGKIDDARR 305 (499)
Q Consensus 232 ~~~~a~~~~~~~~~--~~~~~~~~ll~~~~---~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 305 (499)
+...|..+|+...+ .|...-..+..+++ ......+.|..++...++.-++.. ...|......=-+-|+.....+
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 99999999988763 12222222333332 233667778888888877644332 2355555554455566554444
Q ss_pred HH--------HhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-------HHH---HHHHHHcccC
Q 010837 306 VF--------DHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV-------TFL---GALSACGHAG 364 (499)
Q Consensus 306 ~~--------~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~---~ll~~~~~~~ 364 (499)
.. +.+.+. |-.+|--.+..-...|+.+...++|++.... ++|-.. .|. ..+-.-....
T Consensus 302 ~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32 222222 5567777777777889999999999999875 566321 111 1111223568
Q ss_pred cHHHHHHHHHHchHhcCCCC-ChhHHHHH----HHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHH
Q 010837 365 LVDKGREIFESMERDYSMKP-KMEHYACM----VDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
+++.+.++|+... .+-| ...++..+ ...-.++.+...|.+++..... -|-..+|...|..-.+.+++|.+.
T Consensus 381 d~ertr~vyq~~l---~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACL---DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHH---hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 9999999999988 3455 55555544 3344578999999999998887 488999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCcccc
Q 010837 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491 (499)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 491 (499)
.++++.++.+|+. ..+|...+..-...|+.+.|..+|+-.++.....-|...
T Consensus 458 kLYEkfle~~Pe~-c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 458 KLYEKFLEFSPEN-CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred HHHHHHHhcChHh-hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 9999999999998 899999999999999999999999988876654444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-11 Score=114.21 Aligned_cols=280 Identities=10% Similarity=0.012 Sum_probs=202.1
Q ss_pred HHhCCChhHHHHHHHhccCC--C-hHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhh-HHH-HHHHHhcChhhHHHH
Q 010837 196 YVKGGKTSYARIVFDMMLEK--N-VICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVV-YNA-MIEGYSISIETARKA 268 (499)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~-~~~-ll~~~~~~~~~~~~a 268 (499)
....|+++.|.+.+.+..+. + ...+-....++.+.|+.+.|.+.+.+.. .|+... ... ........ ++.+.|
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~-~~~~~A 172 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ-NELHAA 172 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC-CCHHHH
Confidence 35689999999999887653 2 3344555678889999999999999875 344322 222 23333334 889999
Q ss_pred HHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHH----HHHHHHhCCChhHHHHHHHHH
Q 010837 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTS----MIDGYGKNGNPNQALELFCMM 341 (499)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~----l~~~~~~~g~~~~a~~~~~~m 341 (499)
...++.+.+..+. +...+..+...|.+.|++++|.+.+..+.+. +...+.. ...+....+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999998743 5678889999999999999999999998853 3333321 122223444445556678877
Q ss_pred HHcCCC---CCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 010837 342 QECCVQ---PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH---YACMVDLLGRAGSLEQALKFVLEMPE- 414 (499)
Q Consensus 342 ~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~- 414 (499)
.+.... .+...+..+...+...|+.++|.+.+++..++ .|+... ...........++.+.+.+.+++..+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 775321 27788888999999999999999999999943 454331 11122222345788888888887766
Q ss_pred CCC-H--HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 415 KPN-S--DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 415 ~~~-~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
.|+ . ....++...|.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++-.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344 3 56678899999999999999999954443334445678899999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-09 Score=94.62 Aligned_cols=291 Identities=12% Similarity=0.086 Sum_probs=175.7
Q ss_pred CCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChh
Q 010837 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203 (499)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 203 (499)
.|+|.+|.++..+-.+.+-.| ...|....++. ...|+.+.+..++.+..+..-.++...+-+........|+++
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA-----~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAA-----QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHH-----HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 566777777766665554333 23344444444 556666666666666655433445555555556666666666
Q ss_pred HHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHccc
Q 010837 204 YARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280 (499)
Q Consensus 204 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 280 (499)
.|..-++.+.+ .+.........+|.+.|++.....++.++.+....+ + +++.++
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~-------------~-~e~~~l--------- 227 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS-------------D-EEAARL--------- 227 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC-------------h-HHHHHH---------
Confidence 66555554433 245555666666666666666666665554322110 0 011100
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010837 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357 (499)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 357 (499)
...+|..+++-....+..+.-...++.... .++..-.+++.-+.+.|+.++|.++.++..+++..|+. ...
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~ 301 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL 301 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH
Confidence 012333344444444444444556666553 35666677777788888888888888888777666652 222
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHH
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
-.+.+.++.+.-++..+.-....+..| ..+..|...|.+.+.|.+|...|+...+ +|+..+|+.+.+++.+.|+..+
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 345566777776776666665544444 6677788888888888888888887666 6888888888888888888888
Q ss_pred HHHHHHHHHhcCCCC
Q 010837 437 ANIAANEIFKLNAND 451 (499)
Q Consensus 437 a~~~~~~~~~~~~~~ 451 (499)
|.+..++....-.+|
T Consensus 380 A~~~r~e~L~~~~~~ 394 (400)
T COG3071 380 AEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhcCC
Confidence 888887776544333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-11 Score=103.75 Aligned_cols=197 Identities=12% Similarity=0.064 Sum_probs=163.0
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 360 (499)
...+..+...|...|++++|...++++.+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45667788889999999999999998764 256678888899999999999999999998764 44566777888889
Q ss_pred cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
...|++++|.+.++..............+..+..++...|++++|.+.+++... +.+...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999984322222455677788899999999999999998876 345678888999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
..++++.+..+.. +..+..++..+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQT-AESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999885443 677888899999999999999998877553
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-10 Score=106.35 Aligned_cols=246 Identities=15% Similarity=0.164 Sum_probs=141.0
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhccCC----------Ch-HhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHH
Q 010837 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEK----------NV-ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253 (499)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 253 (499)
-..+...|...|...|+++.|+.+++...+. .+ ...+.+...|...+++++|..+|+++
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A---------- 267 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA---------- 267 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH----------
Confidence 3346667889999999999999999887542 11 13344666777788888887777643
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhH
Q 010837 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 254 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 333 (499)
..+++...-...+--..+++.|..+|.+.|++++|...++++.
T Consensus 268 ---------------L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al---------------------- 310 (508)
T KOG1840|consen 268 ---------------LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL---------------------- 310 (508)
T ss_pred ---------------HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH----------------------
Confidence 2222222221111123466677778888888888888776543
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHcccCcHHHHHHHHHHchHhcC--CCC----ChhHHHHHHHHHHhcCCHHHHH
Q 010837 334 ALELFCMMQECCVQPNYV-TFLGALSACGHAGLVDKGREIFESMERDYS--MKP----KMEHYACMVDLLGRAGSLEQAL 406 (499)
Q Consensus 334 a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~p----~~~~~~~l~~~~~~~~~~~~a~ 406 (499)
+++++.... ..|... .++.+...|+..+++++|..+++...+... +.+ -..+++.|...|...|++++|.
T Consensus 311 --~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~ 387 (508)
T KOG1840|consen 311 --EIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE 387 (508)
T ss_pred --HHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence 233321100 011111 233334444455555555554444332111 111 1345666666777777777777
Q ss_pred HHHHhCCC-------C--C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHh----cCCCC--CCchhHHHHHHHHhcCChH
Q 010837 407 KFVLEMPE-------K--P-NSDVWAALLSSCRLHDDVEMANIAANEIFK----LNAND--RPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 407 ~~~~~~~~-------~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~g~~~ 470 (499)
++++++.. + + ....++.|...|.+.+.+.+|.++|.+... .|+.. ...+|..|+..|.+.|+++
T Consensus 388 ~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 388 ELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 76666554 1 1 123556666667777777766666665543 23322 2456777777888888888
Q ss_pred HHHHHHHHHH
Q 010837 471 SVTELREKMK 480 (499)
Q Consensus 471 ~A~~~~~~~~ 480 (499)
+|.++.+...
T Consensus 468 ~a~~~~~~~~ 477 (508)
T KOG1840|consen 468 AAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHH
Confidence 8877776655
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-10 Score=97.00 Aligned_cols=249 Identities=12% Similarity=0.125 Sum_probs=173.5
Q ss_pred HhCCCHHHHHHHHHhcCCCChhhHH--HHHHHHhcChhhHHHHHHHHHHHHHcccCCC---chhHHHHHHHHHhcCChHH
Q 010837 228 MSQGFVEDAEEIFRKTVEKDIVVYN--AMIEGYSISIETARKALEVHCQLIKNVFFED---VKLGSALVDMYAKCGKIDD 302 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 302 (499)
.-+.+.++|.++|-+|.+.|..||. .-+..+.++.|..|.|+.++..+.++---+. ....-.|..-|...|-+|.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3457888999999888866555544 3455566677888888888888877521111 1233446666788888888
Q ss_pred HHHHHHhcCCCC---hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHcccCcHHHHHHHHHH
Q 010837 303 ARRVFDHMQQKN---VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY----VTFLGALSACGHAGLVDKGREIFES 375 (499)
Q Consensus 303 a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 375 (499)
|+.+|..+.+.+ ......|+..|-...+|++|+++-+++.+.+-++.. ..|.-+...+....+.+.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888887643 345667788888888888888888888876655443 3466677777777888888888888
Q ss_pred chHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 376 MERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN--SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 376 ~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..+. .| .+..--.+.+.+...|+++.|.+.++.+.+ .|+ ..+...|..+|.+.|+.++....+.++.+....+
T Consensus 206 Alqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 8732 44 333344566777888888888888888876 343 3467778888888888888888888888776655
Q ss_pred CCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 452 RPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
..-..+........-.+.|...+.+-..
T Consensus 283 --~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 283 --DAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred --cHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 4455555555555555666666555444
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-09 Score=105.60 Aligned_cols=433 Identities=14% Similarity=0.048 Sum_probs=232.0
Q ss_pred CcccccccCCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCCh
Q 010837 32 KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111 (499)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 111 (499)
.+..+...|..|+..||..+|..|+..|+.+.|. +|.-|.-...+.+...++.++....+.++.+.+. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 3455667888999999999999999999999998 8888876665555566666666655555555443 5566
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHH-HH-------HcCC-----------------CCChhhH----------HHHhhhc
Q 010837 112 SAYNYMIAGYLKNGQVEESLSLVRK-LV-------SSGE-----------------RPDGYTF----------SMILKAS 156 (499)
Q Consensus 112 ~~~~~li~~~~~~g~~~~a~~~~~~-m~-------~~g~-----------------~p~~~~~----------~~ll~~~ 156 (499)
.+|..|..+|.+.|+... ++..++ |. ..|+ -||..+. ..+++..
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666433 111111 11 1111 1222111 0111111
Q ss_pred ccccc-CCcC-----------cchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCC----hHhH
Q 010837 157 TCCRS-NVPL-----------PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN----VICS 220 (499)
Q Consensus 157 ~~~~~-~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~ 220 (499)
..+.- ...+ +..-.+.+........-.|+..+|.++++.-...|+.+.|..++.+|.+.+ .+-+
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 00000 0000 011122222222221114677777777777777777777777777776542 2222
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHhcChh--------hH---------------HHHHH---
Q 010837 221 TSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIE--------TA---------------RKALE--- 270 (499)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~--------~~---------------~~a~~--- 270 (499)
-.++.+ .++...+..+++-|. .|+..|+...+-.+..++. +. ..|..
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 222222 444444444443332 4554444443333322100 00 00111
Q ss_pred ---------HHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC-------ChhHHHHHHHHHHhC------
Q 010837 271 ---------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-------NVFTWTSMIDGYGKN------ 328 (499)
Q Consensus 271 ---------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~------ 328 (499)
.+....-.|......+|..... ...+|+-++.+++-..+..| ++..|..++.-|.+.
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~ 398 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHIC 398 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHH
Confidence 1111111233323333332222 33467777777776666532 344454444443331
Q ss_pred ----------------CChhHHHHHHHHHHHcCCCCCHH----------------------------HHHHHHHHHcccC
Q 010837 329 ----------------GNPNQALELFCMMQECCVQPNYV----------------------------TFLGALSACGHAG 364 (499)
Q Consensus 329 ----------------g~~~~a~~~~~~m~~~~~~p~~~----------------------------~~~~ll~~~~~~~ 364 (499)
....+..++.... .||.. .-+.++-.|+..-
T Consensus 399 ~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 399 SRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred HHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 1112222222211 22211 1223444444444
Q ss_pred cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHhhcCCHHHHHH
Q 010837 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK-----PNSDVWAALLSSCRLHDDVEMANI 439 (499)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~ 439 (499)
+..++...-+... ..-+ + ..|..||+.+....+.+.|..+.++...+ -+..-+..+.+.+.+.+....+..
T Consensus 474 n~lK~l~~~ekye-~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 474 NKLKILCDEEKYE-DLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHH-HHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 5555554333332 2111 2 57899999999999999999999988763 455667888888999999999999
Q ss_pred HHHHHHhcCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 010837 440 AANEIFKLNAND--RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486 (499)
Q Consensus 440 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 486 (499)
+++++.+.-... ...+...+....+..|+.+...+..+-+...|+.-
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 999998732222 24566677888888999999999999988888877
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-12 Score=81.17 Aligned_cols=48 Identities=33% Similarity=0.739 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhc
Q 010837 109 RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156 (499)
Q Consensus 109 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 156 (499)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999988
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-07 Score=88.66 Aligned_cols=282 Identities=13% Similarity=0.144 Sum_probs=168.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhccCCC-------hHhHHHHHHHHHhCCCHHHHHHHHHhcC-CC-------------
Q 010837 188 LYTALVDSYVKGGKTSYARIVFDMMLEKN-------VICSTSMISGFMSQGFVEDAEEIFRKTV-EK------------- 246 (499)
Q Consensus 188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~------------- 246 (499)
.|..+.+.|-..|+++.|..+|++..+-+ ..+|......=.+..+++.|+++.++.. -|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 35566677777777888877777775532 2345555555566677777777776654 11
Q ss_pred -------ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC----CCh
Q 010837 247 -------DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNV 315 (499)
Q Consensus 247 -------~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~ 315 (499)
+...|...+.. -...|.++....+++.+++..+.....+.| ....+-...-++++.++|++-.. |++
T Consensus 469 vQ~rlhrSlkiWs~y~Dl-eEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADL-EESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred HHHHHHHhHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 11112222111 122266777777777777766532222222 22234445567778888877553 444
Q ss_pred -hHHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHHHH--HHHcccCcHHHHHHHHHHchHhcCCCC--Chh
Q 010837 316 -FTWTSMIDGYGK---NGNPNQALELFCMMQECCVQPNYVTFLGAL--SACGHAGLVDKGREIFESMERDYSMKP--KME 387 (499)
Q Consensus 316 -~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~ 387 (499)
..|+..+.-+.+ .-..+.|..+|++..+ |++|...-+..|+ ..-.+.|-...|+.+++++.. ++++ -..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~ 623 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHH
Confidence 367776666554 2468889999999988 6676554332232 222355888899999999763 5555 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH---HHHhhcCCHHHHHHHHHHHHh-cCCCCCCchhHHHHHH
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALL---SSCRLHDDVEMANIAANEIFK-LNANDRPGAYVALSNT 462 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 462 (499)
.|+..|.--...=-......+|+++.+ -|+...-...+ ..-.+.|..+.|..++....+ .+|..+...|.+.-..
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~F 703 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEF 703 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHH
Confidence 677777644433333444555555554 25554433333 334678899999988887766 5666667778888888
Q ss_pred HHhcCChHHHHH
Q 010837 463 LAAAGKWDSVTE 474 (499)
Q Consensus 463 ~~~~g~~~~A~~ 474 (499)
-.+.|+-+-..+
T Consensus 704 EvrHGnedT~ke 715 (835)
T KOG2047|consen 704 EVRHGNEDTYKE 715 (835)
T ss_pred HHhcCCHHHHHH
Confidence 888888443333
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.8e-12 Score=79.69 Aligned_cols=50 Identities=28% Similarity=0.472 Sum_probs=45.0
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc
Q 010837 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362 (499)
Q Consensus 313 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 362 (499)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-09 Score=92.73 Aligned_cols=279 Identities=13% Similarity=0.091 Sum_probs=197.7
Q ss_pred CCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCC--Ch--hhHHHHHHHHhcChhhHHHHHHH
Q 010837 199 GGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTVEK--DI--VVYNAMIEGYSISIETARKALEV 271 (499)
Q Consensus 199 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~--~~~~~ll~~~~~~~~~~~~a~~~ 271 (499)
.|+|.+|++...+-.+. ....|..-+.+.-+.|+.+.+-.++.+..++ |. ..+.+........ ++.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~-~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR-RDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC-CCchhHHHH
Confidence 57788888777665443 2345555566677778888888877777643 22 2233333333333 666677777
Q ss_pred HHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC-----------ChhHHHHHHHHHHhCCChhHHHHHHHH
Q 010837 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----------NVFTWTSMIDGYGKNGNPNQALELFCM 340 (499)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (499)
..++.+.+.. ++........+|.+.|++.....++.++.+. ...+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777776653 5667788889999999999999999888763 224677777777777776666667776
Q ss_pred HHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCH
Q 010837 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNS 418 (499)
Q Consensus 341 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~ 418 (499)
.-.+ .+.+...-..++.-+...|+.++|.++..+.. +.+..|+ ...++ ...+-++...-++..++... +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6443 45566777778888899999999999999998 4365665 12222 23455666655555444333 2345
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
..+..|...|.+.+.+.+|.+.|+..++..++ ...|..+..++.+.|+..+|.++.++....-..|+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s--~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS--ASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 78889999999999999999999988877765 49999999999999999999999988775444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-09 Score=94.76 Aligned_cols=153 Identities=15% Similarity=0.073 Sum_probs=128.1
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHH
Q 010837 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 403 (499)
+.-.|+.-.|..-|+..++....++. .|..+...|....+.++.++.|.... .+.| +..+|..-...+.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHHHHHH
Confidence 44568888999999998886433333 26667777899999999999999988 5667 7778888888888889999
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 404 QALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 404 ~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+|..-|++... +.+...|-.+..+..+.+.++++...|++.++.-|.- +..|+....++..+++++.|.+.++..++
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~-~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC-PEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999999887 3456677778778888899999999999999999988 99999999999999999999999998876
Q ss_pred C
Q 010837 482 R 482 (499)
Q Consensus 482 ~ 482 (499)
.
T Consensus 491 L 491 (606)
T KOG0547|consen 491 L 491 (606)
T ss_pred h
Confidence 4
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-07 Score=84.37 Aligned_cols=264 Identities=12% Similarity=0.028 Sum_probs=189.3
Q ss_pred CCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHh---HHHHHHHHHhCCCHHHHHHHHHhcCCCCh---hhHHHHH
Q 010837 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC---STSMISGFMSQGFVEDAEEIFRKTVEKDI---VVYNAMI 255 (499)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll 255 (499)
++-|+.....+.+.+...|+.++|+..|+....-|..+ .......+.+.|+++....+...+...+. ..|..-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 55677788888899999999999999998876654432 22334456678888888877777653332 2222222
Q ss_pred HHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChh
Q 010837 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPN 332 (499)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~ 332 (499)
...... .+++.|+.+-+..++.... +...|-.-..++...|+.++|.-.|+.... | +..+|..|+.+|...|++.
T Consensus 308 ~~l~~~-K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDE-KKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhh-hhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 222223 5666777777777665432 333444445567788999999988887653 3 7789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-HHH-cccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 010837 333 QALELFCMMQECCVQPNYVTFLGAL-SAC-GHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKFV 409 (499)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~ll-~~~-~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 409 (499)
+|.-+-+...+. ++.+..+...+. ..| ....--++|.++++... .+.|+ ....+.+...+...|+.++++.++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 998877765553 455666665552 222 23344678888888877 55674 445677788888999999999999
Q ss_pred HhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 410 LEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 410 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
++... .||....+.|...+...+.+++|.+.|..+++.+|..
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 88776 6899999999999999999999999999999998887
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-10 Score=91.89 Aligned_cols=187 Identities=12% Similarity=0.042 Sum_probs=96.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc
Q 010837 289 ALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 365 (499)
-|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+-|++..+.. +-+....|....-+|..|+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 3444555556666666555555542 23345555555555566666666555555531 2233344444444455556
Q ss_pred HHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010837 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANE 443 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (499)
+++|...|++........--..+|..+.-+..+.|+.+.|.+.|++..+ +....+...+.......|++-.|...++.
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 6666666555553322222334555555555555666666555555554 22334445555555555555555555555
Q ss_pred HHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHH
Q 010837 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 444 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
....+. .+.......|+.-.+.|+.+.+-+.=.
T Consensus 199 ~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 199 YQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred HHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 555444 335555555555555555555444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-09 Score=106.95 Aligned_cols=259 Identities=14% Similarity=0.008 Sum_probs=170.4
Q ss_pred ChHhHHHHHHHHHh-----CCCHHHHHHHHHhcC--CCChh-hHHHHHHHHhc--------ChhhHHHHHHHHHHHHHcc
Q 010837 216 NVICSTSMISGFMS-----QGFVEDAEEIFRKTV--EKDIV-VYNAMIEGYSI--------SIETARKALEVHCQLIKNV 279 (499)
Q Consensus 216 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~--~~~~~-~~~~ll~~~~~--------~~~~~~~a~~~~~~~~~~~ 279 (499)
+...|...+.+-.. .+.+++|...|++.. .|+.. .|..+-.++.. ..++.++|...+++..+..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 44555566555322 234678888888887 44433 34333333221 1234678888888888865
Q ss_pred cCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHH
Q 010837 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY-VTFLG 355 (499)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ 355 (499)
+. +...+..+...+...|++++|...|+++.+ | +...+..+...+...|++++|...+++..+. .|+. ..+..
T Consensus 335 P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~ 411 (553)
T PRK12370 335 HN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGIT 411 (553)
T ss_pred CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHH
Confidence 42 566777788888889999999999988765 3 4567788888888999999999999998875 3432 23333
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHhhcC
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSD-VWAALLSSCRLHD 432 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~l~~~~~~~~ 432 (499)
++..+...|++++|...++++... . .| +...+..+..+|...|++++|...++++.. .|+.. ..+.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 444456678899999998887733 1 34 445567778888889999999999988765 34433 3444555566666
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
++|...++.+.+..-.. ......+...|.-.|+-+.+... +++.+.|
T Consensus 490 --~~a~~~l~~ll~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRI-DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHh-hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 47777777766533222 22223366666667776666665 7776654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-09 Score=104.04 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCC-CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHh
Q 010837 301 DDARRVFDHMQQ-KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379 (499)
Q Consensus 301 ~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 379 (499)
++-........+ ++..+|.+++..-..+|+.+.|..++.+|.+.|++.+.+-|-.|+-+ .++...++.+++.|. .
T Consensus 189 ekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq-e 264 (1088)
T KOG4318|consen 189 EKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ-E 264 (1088)
T ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHH-H
Confidence 333333333333 78888888888888888889999999999888888888877777754 677778888888887 5
Q ss_pred cCCCCChhHHHHHHHHHHhcCC
Q 010837 380 YSMKPKMEHYACMVDLLGRAGS 401 (499)
Q Consensus 380 ~~~~p~~~~~~~l~~~~~~~~~ 401 (499)
.|+.|+..|+...+..+...|.
T Consensus 265 ~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 265 KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hcCCCCcchhHHHHHhhhcchh
Confidence 5888888888776666655443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.9e-08 Score=92.61 Aligned_cols=451 Identities=12% Similarity=0.064 Sum_probs=274.1
Q ss_pred ccCCCCCccCCCCcccccccCCCCCcchHH--HHH-HhhhCCCChhhHHHHHH----HHHHhCCCCChHHHHHHHHHHHc
Q 010837 20 YTLVPPNQTFPPKLQNYDSLSNPLTATSLP--SAL-QHYINSDTPFYGLKIHA----HITKTGVKPNTNISIKLLILHLK 92 (499)
Q Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~ll-~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~ 92 (499)
..|+......+.....+.......+.+.+. .++ ..++...+.+++.-..- ++....+.-|..+|..+.-++.+
T Consensus 256 ~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~ 335 (799)
T KOG4162|consen 256 RSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSR 335 (799)
T ss_pred cccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 355555555665555555433333444332 222 24455566666654433 33334566789999999999999
Q ss_pred CCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCC-ChhhHHHHhhhccccccCCcCcch
Q 010837 93 CGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP-DGYTFSMILKASTCCRSNVPLPRN 168 (499)
Q Consensus 93 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~ 168 (499)
+|+++.+.+.|++... .....|+.+-..|...|.-..|..++++-....-.| |...+-..-+.|. ...+..+
T Consensus 336 ~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~----e~l~~~e 411 (799)
T KOG4162|consen 336 CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCI----ERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHH----hchhhhh
Confidence 9999999999999775 345679999999999999999999999866543234 3444444455553 4455555
Q ss_pred hHHHHHHHHHHc--CC--CCchhHHHHHHHHHHhC-----------CChhHHHHHHHhccCC---ChHhHHHHHHHHHhC
Q 010837 169 LGRMVHAQILKC--DV--KADDVLYTALVDSYVKG-----------GKTSYARIVFDMMLEK---NVICSTSMISGFMSQ 230 (499)
Q Consensus 169 ~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 230 (499)
.+..+-...... +. ......|..+.-+|... ....++.+.+++..+. |..+..-+.--|+..
T Consensus 412 egldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~ 491 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQ 491 (799)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 555555555441 11 12233444444444321 1234566666666443 333333444456777
Q ss_pred CCHHHHHHHHHhcCC----CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHH
Q 010837 231 GFVEDAEEIFRKTVE----KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306 (499)
Q Consensus 231 g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 306 (499)
++++.|.+..++... .+...|..+.-.+... +++.+|+.+.+.....-.. |......-++.-...++.+++...
T Consensus 492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~-kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQ-KRLKEALDVVDAALEEFGD-NHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhhh-hhhhchhhhhhhhhcccHHHHHHH
Confidence 888888877776652 2344444443333333 6677777777665543111 111111112222234555555443
Q ss_pred HHhcCC------------------------------C--ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--CC---
Q 010837 307 FDHMQQ------------------------------K--NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ--PN--- 349 (499)
Q Consensus 307 ~~~~~~------------------------------~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~--- 349 (499)
...+.. + .+.++..+..-... +...+..-.. |...-+. |+
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~-Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK-LPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc-cCcccccCCCCchH
Confidence 332221 0 01111111111100 0000000000 1111111 22
Q ss_pred ---HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHH
Q 010837 350 ---YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAA 423 (499)
Q Consensus 350 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ 423 (499)
...+......+.+.++.++|...+.+.. ++.| ....|......+...|.+++|.+.|..... +.++.+..+
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A 723 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH
Confidence 1234456677888899999998888877 4455 677888888889999999999999988876 445678999
Q ss_pred HHHHHhhcCCHHHHHH--HHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 424 LLSSCRLHDDVEMANI--AANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+...+.+.|+..-|.. ++.++.+.+|.. +..|..++..+.+.|+.+.|.+.|+...+..
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999999998888877 999999999998 9999999999999999999999999877643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-09 Score=105.04 Aligned_cols=213 Identities=11% Similarity=-0.042 Sum_probs=148.7
Q ss_pred ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHH---------hcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhC
Q 010837 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA---------KCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKN 328 (499)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 328 (499)
..+..++|...+++..+..+. +...|..+..+|. ..+++++|...++++.+ .+...+..+...+...
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH 351 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 346677888888888776432 3345555554443 22447888888888765 2566777777888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 010837 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALK 407 (499)
Q Consensus 329 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 407 (499)
|++++|...|++..+.+ +.+...+..+..++...|++++|...+++.. .+.|+ ...+..++..+...|++++|+.
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 88899999888888753 3345667777788888888999988888887 34553 2233344445666788888888
Q ss_pred HHHhCCC--CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 408 FVLEMPE--KP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 408 ~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.+++... .| +...+..+..++...|+.++|...++++....+.. ....+.+...|...| +.|...++.+.+
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG-LIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh-HHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 8887754 24 34456667777888889898988888876666554 556667777777777 477776766654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.1e-07 Score=84.06 Aligned_cols=415 Identities=14% Similarity=0.151 Sum_probs=261.9
Q ss_pred HHhhhCCCChhhHHHHHHHHHHh-CCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhH
Q 010837 52 LQHYINSDTPFYGLKIHAHITKT-GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 130 (499)
+......++.......|+..+.. -+.-...+|...+......+-.+-+..++++..+-++..-+..|..+++.+++++|
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHH
Confidence 44445667777777777776654 33344567777888888888888999999998888888888899999999999999
Q ss_pred HHHHHHHHHcC------CCCChhhHHHHhhhccccccCCcCcc---hhHHHHHHHHHHcCCCCch--hHHHHHHHHHHhC
Q 010837 131 LSLVRKLVSSG------ERPDGYTFSMILKASTCCRSNVPLPR---NLGRMVHAQILKCDVKADD--VLYTALVDSYVKG 199 (499)
Q Consensus 131 ~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 199 (499)
.+.+....... -+.+-..|..+.... .+..+. -.+..+++.+... -+|. ..|+.|.+.|.+.
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdli-----s~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLI-----SQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHH-----HhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHh
Confidence 99998876542 133444555544443 222222 2233333333221 2333 4789999999999
Q ss_pred CChhHHHHHHHhccCC--ChHhHHHHHHHHHh----------------CCC------HHHHHHHHHhcCC----------
Q 010837 200 GKTSYARIVFDMMLEK--NVICSTSMISGFMS----------------QGF------VEDAEEIFRKTVE---------- 245 (499)
Q Consensus 200 g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~----------------~g~------~~~a~~~~~~~~~---------- 245 (499)
|.+++|..+|++..+. .+.-++.+..+|++ .|+ ++-.+..|+.+..
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999987653 22222222222221 121 2222333333321
Q ss_pred -----CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHc-ccCC----CchhHHHHHHHHHhcCChHHHHHHHHhcCCCCh
Q 010837 246 -----KDIVVYNAMIEGYSISIETARKALEVHCQLIKN-VFFE----DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315 (499)
Q Consensus 246 -----~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 315 (499)
.++..|..-+..+ .++..+....+.++.+. .+.. -...|..+.+.|-..|+++.|..+|++..+-+-
T Consensus 342 LRQn~~nV~eW~kRV~l~---e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY---EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhhhh---cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 1223333333322 24455666677666654 1111 124677888999999999999999999887332
Q ss_pred -------hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHcccCcHHHHHH
Q 010837 316 -------FTWTSMIDGYGKNGNPNQALELFCMMQECCVQ----------P-------NYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 316 -------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
.+|..-...-.+..+++.|++++++.....-. | +...|+..++.-...|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 34555555666788899999988876532111 1 12335555666666788899999
Q ss_pred HHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCH-HHHHHHHHHHhh---cCCHHHHHHHHHHH
Q 010837 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNS-DVWAALLSSCRL---HDDVEMANIAANEI 444 (499)
Q Consensus 372 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~ 444 (499)
+|+++. +..+. ++.+.-.....+-...-++++.+++++-.. -|++ ..|+..+.-+.+ ....+.|..+|+++
T Consensus 499 vYdrii-dLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 499 VYDRII-DLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHH-HHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999998 33332 222222333344566778999999999887 3554 467766655543 34789999999999
Q ss_pred HhcCCCCCC--chhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 445 FKLNANDRP--GAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 445 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
++.-| |.. ..|......-.+.|-...|+.++++.
T Consensus 577 L~~Cp-p~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 577 LDGCP-PEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HhcCC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99444 411 12333333334668888889998885
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-07 Score=83.92 Aligned_cols=405 Identities=13% Similarity=0.097 Sum_probs=212.2
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHH-------------------------------
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG------------------------------- 100 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~------------------------------- 100 (499)
++-+...+++++|.....+++..+ +-+...+..-+-++.+.+++++|+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 334445556666666666665554 333344444344444445555554
Q ss_pred --HHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHH
Q 010837 101 --QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQI 177 (499)
Q Consensus 101 --~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~ 177 (499)
..++...+.+..+...-...+-+.|++++|+++|+.+.+.+..--.. .-..++.+- .+... ..+
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~------------a~l~~-~~~ 164 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA------------AALQV-QLL 164 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH------------HhhhH-HHH
Confidence 44443333333344444455666777777777777776554221111 111111110 00011 012
Q ss_pred HHcCCCCchhHHHH---HHHHHHhCCChhHHHHHHHhc--------cCCCh----------HhHHHHHHHHHhCCCHHHH
Q 010837 178 LKCDVKADDVLYTA---LVDSYVKGGKTSYARIVFDMM--------LEKNV----------ICSTSMISGFMSQGFVEDA 236 (499)
Q Consensus 178 ~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~--------~~~~~----------~~~~~l~~~~~~~g~~~~a 236 (499)
......| ..+|.. ..-.++..|++.+|+++++.. .+.|. ..--.+.-.+...|+.++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 2222223 223333 334456788888888888776 11111 1223355567778889999
Q ss_pred HHHHHhcCC---CChhhHHHHH---HHHhcChhhHH-HHHHHHHH-----------HHHcccCCCchhHHHHHHHHHhcC
Q 010837 237 EEIFRKTVE---KDIVVYNAMI---EGYSISIETAR-KALEVHCQ-----------LIKNVFFEDVKLGSALVDMYAKCG 298 (499)
Q Consensus 237 ~~~~~~~~~---~~~~~~~~ll---~~~~~~~~~~~-~a~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~g 298 (499)
..+|....+ +|...-.... -++.......+ ..+..++. +....-.-....-+.++..| .+
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tn 321 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TN 321 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hh
Confidence 888887762 3332221111 11211111111 11111111 10000000111112223222 34
Q ss_pred ChHHHHHHHHhcCCCC-hhHHHHHHHHHHh--CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHH-
Q 010837 299 KIDDARRVFDHMQQKN-VFTWTSMIDGYGK--NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE- 374 (499)
Q Consensus 299 ~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~- 374 (499)
..+.+.++........ ...+.+++....+ .....++.+++...-+....-.....-..++.....|+++.|.+++.
T Consensus 322 k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5556666666555432 3344444443332 23467778887777664222223455566677788999999999998
Q ss_pred -------HchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCCHH----HHHHHHHHHhhcCCHHHHH
Q 010837 375 -------SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-----KPNSD----VWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 375 -------~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~----~~~~l~~~~~~~~~~~~a~ 438 (499)
.+. +.+..| .+...+...+.+.++.+.|..++.+... .+... ++.-+...-.+.|+-++|.
T Consensus 402 ~~~~~~ss~~-~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 402 FLESWKSSIL-EAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred Hhhhhhhhhh-hhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 555 334444 4556677778888877767666665544 12223 3333334446779999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
.+++++.+.++.. ..+...++.+|++. +.+.|..+-+.
T Consensus 479 s~leel~k~n~~d-~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 479 SLLEELVKFNPND-TDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHhCCch-HHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999988887 88999999999887 56777766443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-09 Score=98.46 Aligned_cols=89 Identities=17% Similarity=0.072 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHcc
Q 010837 287 GSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP-NYVTFLGALSACGH 362 (499)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 362 (499)
|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|...|++..+. .| +..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 44444445555555555555554442 13445555555555555555555555555442 22 23344444444555
Q ss_pred cCcHHHHHHHHHHch
Q 010837 363 AGLVDKGREIFESME 377 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~ 377 (499)
.|++++|.+.++...
T Consensus 145 ~g~~~eA~~~~~~al 159 (296)
T PRK11189 145 GGRYELAQDDLLAFY 159 (296)
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555555554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-08 Score=87.96 Aligned_cols=415 Identities=10% Similarity=0.051 Sum_probs=242.0
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCChh
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQVE 128 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 128 (499)
+.-+...+++..|..+++.-...+-.-...+-.-+...+.+.|++++|...++.+.+ ++...+-.|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 455566789999999988766544322223333345556788999999999987764 45566666776667778888
Q ss_pred hHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHH
Q 010837 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208 (499)
Q Consensus 129 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 208 (499)
+|..+-+...+ +..--..++... .+.++.+.-..+++.+.+. ..--.+|..+....-.+.+|+++
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhla-----hklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLA-----HKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHH-----HHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHH
Confidence 88877665422 222233333333 4555555555555554332 12233444444445578999999
Q ss_pred HHhccCCCh--HhHHH-HHHHHHhCCCHHHHHHHHHhcC--CCChhh-HHHHHHHHhcC-hhhHHHHHH-----------
Q 010837 209 FDMMLEKNV--ICSTS-MISGFMSQGFVEDAEEIFRKTV--EKDIVV-YNAMIEGYSIS-IETARKALE----------- 270 (499)
Q Consensus 209 ~~~~~~~~~--~~~~~-l~~~~~~~g~~~~a~~~~~~~~--~~~~~~-~~~ll~~~~~~-~~~~~~a~~----------- 270 (499)
+.++...+. ...|. +.-+|.+..-++-+.++++--. -||... -|.......+. .|. .|.+
T Consensus 174 YkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr--~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 174 YKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGR--TAEDEKKELADNIDQ 251 (557)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccc--hhHHHHHHHHhcccc
Confidence 999877543 23333 4456677777777766665443 233322 22111111111 010 1111
Q ss_pred ---HHHHHHHccc------------CCC-----chhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 010837 271 ---VHCQLIKNVF------------FED-----VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330 (499)
Q Consensus 271 ---~~~~~~~~~~------------~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 330 (499)
..+.+.+.+. -|. +..-..|+-.|.+.+++.+|..+.+.+...++.-|-.-.-.++..|+
T Consensus 252 ~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQ 331 (557)
T ss_pred cchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhh
Confidence 1112222110 010 11112344457888899999988888765555444433333444333
Q ss_pred -------hhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCH
Q 010837 331 -------PNQALELFCMMQECCVQPNYV-TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 331 -------~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 402 (499)
..-|...|+-.-+.+..-|.. .--++..++.-..+++++..++..+. .+-...|...+ .+..+++..|.+
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny 409 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNY 409 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcCh
Confidence 333444444443333333322 12234445555568889999888887 43333444444 478899999999
Q ss_pred HHHHHHHHhCCCC--CCHHHHHHH-HHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 403 EQALKFVLEMPEK--PNSDVWAAL-LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 403 ~~a~~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
.+|.++|-.+... .|..+|.++ .++|.+.+..+.|..++-++. .+.........+.+-|.+.+.+--|.+.|+.+
T Consensus 410 ~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 410 VEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999999888762 455666654 567788999998866554332 22222355666778889999999999999988
Q ss_pred HhCCCccC
Q 010837 480 KLRGVLKD 487 (499)
Q Consensus 480 ~~~~~~~~ 487 (499)
...+..|.
T Consensus 488 E~lDP~pE 495 (557)
T KOG3785|consen 488 EILDPTPE 495 (557)
T ss_pred HccCCCcc
Confidence 77655444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-07 Score=87.15 Aligned_cols=414 Identities=14% Similarity=0.085 Sum_probs=253.2
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC--CChHH-HHHHHHHHHhC--
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSA-YNYMIAGYLKN-- 124 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~-- 124 (499)
-....+...|++++|++.++.-.+. +.............+.+.|+.++|...+..+.. |+... |..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence 3445667889999999999875544 345567778888899999999999999999985 44444 44455544222
Q ss_pred ---CChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCC
Q 010837 125 ---GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201 (499)
Q Consensus 125 ---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (499)
.+.+...++|+++... -|.......+.-.+. ....-...+..+...+...|+++ +|+.|-..|.....
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~----~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFL----EGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccC----CHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 3567788899988776 354444433322220 21222345666777777788544 56666666665555
Q ss_pred hhHHHHHHHhccC------------------CCh--HhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHh
Q 010837 202 TSYARIVFDMMLE------------------KNV--ICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYS 259 (499)
Q Consensus 202 ~~~A~~~~~~~~~------------------~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~ 259 (499)
.+-..+++..... |.. .++.-+...|-..|++++|+++.++.+ .|+.+-+-.+-.-+.
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Karil 238 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 5555555555311 122 245667788899999999999999887 566555555555556
Q ss_pred cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChh----------HH--HHHHHHHHh
Q 010837 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF----------TW--TSMIDGYGK 327 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~--~~l~~~~~~ 327 (499)
+..|+..+|...++...+... .|..+-+..+..+.++|++++|..++....+++.. .| .....+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 666999999999999988765 36777778889999999999999999888765411 22 334678889
Q ss_pred CCChhHHHHHHHHHHHc-----CCCCCHHHH----------HHHHHHHccc---C----cHHHHHHHHHHchHhcCCCCC
Q 010837 328 NGNPNQALELFCMMQEC-----CVQPNYVTF----------LGALSACGHA---G----LVDKGREIFESMERDYSMKPK 385 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~-----~~~p~~~~~----------~~ll~~~~~~---~----~~~~a~~~~~~~~~~~~~~p~ 385 (499)
.|++..|++.|....+. .-+-|-++| ..++...-+. . -...|.++|-.+..+......
T Consensus 318 ~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~ 397 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQG 397 (517)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 99999888776665432 113333333 2333221111 1 112344444444321110000
Q ss_pred -----------hhHHHHHHHHH---HhcCCHHHHHHHHHh-----------CCC----CCCHHHHHHHHHHHhhcC-CHH
Q 010837 386 -----------MEHYACMVDLL---GRAGSLEQALKFVLE-----------MPE----KPNSDVWAALLSSCRLHD-DVE 435 (499)
Q Consensus 386 -----------~~~~~~l~~~~---~~~~~~~~a~~~~~~-----------~~~----~~~~~~~~~l~~~~~~~~-~~~ 435 (499)
..--..+..-. .+...-+++.+.-.+ ... +.|... +..-+.+.. =.+
T Consensus 398 ~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPLe 474 (517)
T PF12569_consen 398 EEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPLE 474 (517)
T ss_pred cccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHHH
Confidence 00000000000 011111111111100 000 111111 122233444 468
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
+|.++++-+.+..++. ..+|..-..+|.+.|++-.|.+.+.+
T Consensus 475 ~A~kfl~pL~~~a~~~-~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 475 EAMKFLKPLLELAPDN-IETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHhCccc-hhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 8999999999999987 99999999999999999999887754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.7e-07 Score=78.70 Aligned_cols=292 Identities=13% Similarity=0.032 Sum_probs=203.5
Q ss_pred CCCchhHHHHHHHHHH--hCCChhHHHHHHHhc-----cCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChh---
Q 010837 182 VKADDVLYTALVDSYV--KGGKTSYARIVFDMM-----LEKNVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIV--- 249 (499)
Q Consensus 182 ~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~--- 249 (499)
++|...+...-+.+++ -.++...|...+-.+ ...|+.....+...+...|+.++|...|++.. .|+..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 3444444444444443 345544554444333 22488999999999999999999999999876 45433
Q ss_pred -hHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHH
Q 010837 250 -VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGY 325 (499)
Q Consensus 250 -~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~ 325 (499)
.|..++. ..|+.+....+...+....-. +...|..-........+++.|+.+-++..+. ++..+-.-...+
T Consensus 270 D~Ya~LL~----~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL 344 (564)
T KOG1174|consen 270 DLYAVLLG----QEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL 344 (564)
T ss_pred HHHHHHHH----hccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH
Confidence 3444443 336666666666666554311 1222222233345667899999998887764 445555556788
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHH-HHH-HhcCCHH
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV-DLL-GRAGSLE 403 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~~~~~ 403 (499)
...|+.++|.-.|+..+.. -+-+...|..|+.+|...|++.+|.-.-+..... +.-+..+...+. ..+ ..-..-+
T Consensus 345 ~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHH
Confidence 8899999999999998774 2457789999999999999999999888777632 233445544442 222 2334457
Q ss_pred HHHHHHHhCCC-CCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 404 QALKFVLEMPE-KPNS-DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 404 ~a~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+|.+++++... +|+- ...+.+...|...|..+.++.++++.+...++. ...+.|+..+.....+.+|...|.....
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 89999998876 5654 567777888999999999999999998876654 8889999999999999999998887665
Q ss_pred CC
Q 010837 482 RG 483 (499)
Q Consensus 482 ~~ 483 (499)
.+
T Consensus 500 ~d 501 (564)
T KOG1174|consen 500 QD 501 (564)
T ss_pred cC
Confidence 43
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-07 Score=87.73 Aligned_cols=437 Identities=12% Similarity=0.070 Sum_probs=271.2
Q ss_pred CcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCC---ChHHHHHHHHH
Q 010837 44 TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR---TLSAYNYMIAG 120 (499)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~ 120 (499)
...-|..+++.| ..+++...+...+.+.+ +.+-...+.....-.+...|+-++|......-... +.++|..+.-.
T Consensus 7 E~~lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 7 ENALFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 334455666544 67788888888888887 44445556555555667789999999988876653 45678888888
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhC
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (499)
+-...++++|++.|...... .||.. .+.-+--.- .+.++.+..........+.. +.....|..++.++.-.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ-----~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQ-----IQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL 156 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-----HHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Confidence 88889999999999998875 44443 332211111 45555565555555555432 23344677788888888
Q ss_pred CChhHHHHHHHhccC-----CChHhHHH------HHHHHHhCCCHHHHHHHHHhcCC--CChhhHHHHHHHHhcChhhHH
Q 010837 200 GKTSYARIVFDMMLE-----KNVICSTS------MISGFMSQGFVEDAEEIFRKTVE--KDIVVYNAMIEGYSISIETAR 266 (499)
Q Consensus 200 g~~~~A~~~~~~~~~-----~~~~~~~~------l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~ 266 (499)
|+...|..+.+...+ ++...+.. -.....+.|..++|++.+..-.. -|...+...-..+....+..+
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence 999999888877743 22222222 22446778888888888766542 233444433333444448888
Q ss_pred HHHHHHHHHHHcccCCCch-hHHHHHHHHHhcCChHHHH-HHHHhcCCC--Chh-HHHHHHHHHHhCCChhHHHHHHHHH
Q 010837 267 KALEVHCQLIKNVFFEDVK-LGSALVDMYAKCGKIDDAR-RVFDHMQQK--NVF-TWTSMIDGYGKNGNPNQALELFCMM 341 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~-~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~a~~~~~~m 341 (499)
+|..++..++..+ ||.. .|-.+..++.+-.+.-++. .+|....+. -.. .-..=+.......-.+..-+++..+
T Consensus 237 eA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 237 EAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred hHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHH
Confidence 9999999988875 4444 4444455554333333333 666655431 000 0000011111122234455667777
Q ss_pred HHcCCCCCHHHHHHHHHHHcccCcHHH----HHHHHHHchHhcCC----------CCCh--hHHHHHHHHHHhcCCHHHH
Q 010837 342 QECCVQPNYVTFLGALSACGHAGLVDK----GREIFESMERDYSM----------KPKM--EHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 342 ~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~----------~p~~--~~~~~l~~~~~~~~~~~~a 405 (499)
.+.|+++--..+.++ |-.....+- +..+...+. ..|. +|+. .++..++..|-+.|+++.|
T Consensus 315 l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~-~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 315 LSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLS-GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred hhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcc-cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 888876543333333 222111111 112222221 1111 3443 3455678889999999999
Q ss_pred HHHHHhCCC-CCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 406 LKFVLEMPE-KPNS-DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 406 ~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
..+++.... .|+. ..|..-.+.+...|+.++|..++++..+.+-.+ ..+-..-+....++.+.++|.++...+.+.|
T Consensus 391 ~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD-R~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 391 LEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD-RAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh-HHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 999999987 3554 456666688899999999999999999888766 4444467777889999999999999888777
Q ss_pred C-----ccCccccccccCC
Q 010837 484 V-----LKDTGCSWVGTES 497 (499)
Q Consensus 484 ~-----~~~~~~~~~~~~~ 497 (499)
. -.+..|.|.+++.
T Consensus 470 ~~~~~~L~~mqcmWf~~E~ 488 (700)
T KOG1156|consen 470 FGAVNNLAEMQCMWFQLED 488 (700)
T ss_pred cchhhhHHHhhhHHHhHhh
Confidence 4 2346677877654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.4e-09 Score=90.50 Aligned_cols=195 Identities=19% Similarity=0.157 Sum_probs=129.7
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh
Q 010837 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296 (499)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (499)
...+..+...+...|++++|.+.+++..+ .. +.+...+..+...|..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~--------------------------------~~-p~~~~~~~~la~~~~~ 77 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE--------------------------------HD-PDDYLAYLALALYYQQ 77 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------------hC-cccHHHHHHHHHHHHH
Confidence 45666777777777777777777765531 11 1123344555666777
Q ss_pred cCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHcccCcHHHHHHH
Q 010837 297 CGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ-PNYVTFLGALSACGHAGLVDKGREI 372 (499)
Q Consensus 297 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~ 372 (499)
.|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.... .....+..+..++...|++++|...
T Consensus 78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776653 24456666677777778888888887777654222 2334555666777788888888888
Q ss_pred HHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 373 FESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 373 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
+++.... .| +...+..+...+...|++++|.+.+++... +.+...+..++..+...|+.++|..+.+.+...
T Consensus 158 ~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8877732 33 455677777788888888888888877654 344556666677777788888888877766554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-09 Score=92.41 Aligned_cols=225 Identities=12% Similarity=0.044 Sum_probs=179.4
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHh
Q 010837 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGK 327 (499)
Q Consensus 251 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~ 327 (499)
|..-+..|.-..|...+|...++..++... -+.||..|-++|.+..+.+.|+.+|.+-.+ | |+.....+...+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 444444444444777788888877777654 455677788889999999999999988775 3 44445566777888
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010837 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 407 (499)
.++.++|.++|+...+.. +.+.....++...|.-.++++-|..+|+++. +.|+ -+...|+.+.-+|.-.+++|-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 899999999999988763 5566677777778888899999999999998 5565 456778888888888999999998
Q ss_pred HHHhCCC---CCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 408 FVLEMPE---KPN--SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 408 ~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
-|.+... +|+ ...|-.+.......||+..|.+.|+-.+..+++. ...++.|...-.+.|++++|..+++....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 8887765 233 4678888888899999999999999999998888 88999999999999999999999988765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-06 Score=82.75 Aligned_cols=424 Identities=11% Similarity=0.031 Sum_probs=266.5
Q ss_pred CcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHH
Q 010837 44 TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAG 120 (499)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~ 120 (499)
-.+++....-.+...|+-++|........+.+ .-+.+.|..+.-.+....++++|++.|.... +.|...|.-+--.
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL 118 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL 118 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34445554455667889999999988887755 4567788888878888899999999998765 3466677777766
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCCh-hhHHHHhhhccccccCCcCcchhHHHHHHHHHHcC-CCCchhHHHHHH-----
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDG-YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADDVLYTALV----- 193 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----- 193 (499)
-++.|+++.....-..+.+. .|+. ..|.....+. ...++...|..+.+...+.. -.|+...|....
T Consensus 119 Q~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~-----~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~ 191 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQ-----HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ 191 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 77788888888888877775 3443 4555555555 67778888888888887765 245655554332
Q ss_pred -HHHHhCCChhHHHHHHHhccCC--C-hHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHh-cChhhHH
Q 010837 194 -DSYVKGGKTSYARIVFDMMLEK--N-VICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYS-ISIETAR 266 (499)
Q Consensus 194 -~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~-~~~~~~~ 266 (499)
......|.+++|.+.+...... | ...-.+-...+.+.++.++|..++..+. .||...|...+..+. +..+..+
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHH
Confidence 3445678888888877766543 2 2333455677889999999999999987 566666666555544 3434443
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC-ChhHHHHHHHHHHhCCChhHHHHHHHHHHH--
Q 010837 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCMMQE-- 343 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-- 343 (499)
....++....+.-....... ..=+....-..-.+....++..+.+. -+.++..+...|-.-...+-..++...+..
T Consensus 272 ~lk~ly~~ls~~y~r~e~p~-Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 272 ALKALYAILSEKYPRHECPR-RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSL 350 (700)
T ss_pred HHHHHHHHHhhcCcccccch-hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhc
Confidence 33355555544321111100 00011111111112222333333332 233444444443322222211122222111
Q ss_pred --cC----------CCCCHH--HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 010837 344 --CC----------VQPNYV--TFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKF 408 (499)
Q Consensus 344 --~~----------~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 408 (499)
.| -+|... |+-.+...+-+.|+++.|..+++... +-.|+ +..|-.-.+.+...|++++|..+
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 11 144443 45567788899999999999999998 55775 45666667889999999999999
Q ss_pred HHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----C-CchhH--HHHHHHHhcCChHHHHHHHHH
Q 010837 409 VLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-----R-PGAYV--ALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 409 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~-~~~~~--~l~~~~~~~g~~~~A~~~~~~ 478 (499)
+++..+ .+|...-.-...-..+.++.++|.+++....+.|... + .-.|. .=+.+|.+.|++.+|++-|..
T Consensus 428 l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 428 LDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 999887 4665555566667788899999999999988877522 0 11122 235567888888877765544
Q ss_pred H
Q 010837 479 M 479 (499)
Q Consensus 479 ~ 479 (499)
+
T Consensus 508 i 508 (700)
T KOG1156|consen 508 I 508 (700)
T ss_pred H
Confidence 3
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-09 Score=91.39 Aligned_cols=227 Identities=15% Similarity=0.102 Sum_probs=187.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcC
Q 010837 221 TSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298 (499)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 298 (499)
+.+.++|.+.|-+.+|.+.|+... .|-+.||..+-+.|.+. +..+.|+.++.+-.+.- +-++....-+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ri-dQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRI-DQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHh-ccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHH
Confidence 568899999999999999998876 56778888888888666 78889999988877753 234444455778888899
Q ss_pred ChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHH
Q 010837 299 KIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375 (499)
Q Consensus 299 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 375 (499)
+.++|.++|+...+. ++.....+...|.-.|+++.|+..|+++.+.|+. +...|+.+.-+|.-.++++-+..-|.+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 999999999998763 5666777778888999999999999999999854 677888888899999999999999988
Q ss_pred chHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 376 MERDYSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 376 ~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.... --.| -..+|..|.......|++..|.+.|+-... ..+...++.|.-.-.+.|+.++|..+++.+.+..|..
T Consensus 384 Alst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 384 ALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 8733 3334 355788888888899999999999998876 3456789999988999999999999999998887765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-08 Score=95.95 Aligned_cols=245 Identities=14% Similarity=0.127 Sum_probs=149.8
Q ss_pred hhHHHHhhhccccccCCcCcchhHHHHHHHHHHc-----CC-CCchh-HHHHHHHHHHhCCChhHHHHHHHhccCC----
Q 010837 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC-----DV-KADDV-LYTALVDSYVKGGKTSYARIVFDMMLEK---- 215 (499)
Q Consensus 147 ~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 215 (499)
.+...+-..| ...++++.|..+++..++. |. .|... ..+.+...|...+++++|..+|+++..-
T Consensus 200 ~~~~~La~~y-----~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 200 RTLRNLAEMY-----AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred HHHHHHHHHH-----HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4566677777 8888889888888877664 21 23333 3445778899999999999999988441
Q ss_pred -------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCc-hhH
Q 010837 216 -------NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV-KLG 287 (499)
Q Consensus 216 -------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 287 (499)
-..+++.|..+|.+.|++++|...+++ |..+++..... ..|.+ ..+
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~-------------------------Al~I~~~~~~~-~~~~v~~~l 328 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER-------------------------ALEIYEKLLGA-SHPEVAAQL 328 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH-------------------------HHHHHHHhhcc-ChHHHHHHH
Confidence 135778888899999999999888774 33333331110 11111 123
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHH
Q 010837 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367 (499)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 367 (499)
+.+...+...+++++|..+++.. .+++..........-..+++.+...|.+.|+++
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~a------------------------l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKA------------------------LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHH------------------------HHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 33444555556666665555422 112211110000011235666666666667777
Q ss_pred HHHHHHHHchHhc----C-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCCH-HHHHHHHHHHhhcC
Q 010837 368 KGREIFESMERDY----S-MKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--------KPNS-DVWAALLSSCRLHD 432 (499)
Q Consensus 368 ~a~~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~-~~~~~l~~~~~~~~ 432 (499)
+|.++++++.+.. + ..+ ....++.|...|.+.+++++|.++|.+... .|+. .+|..|...|...|
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 6666666665432 1 112 233556677777777777777777766543 2333 57888888888888
Q ss_pred CHHHHHHHHHHHHh
Q 010837 433 DVEMANIAANEIFK 446 (499)
Q Consensus 433 ~~~~a~~~~~~~~~ 446 (499)
+++.|.++.+.+..
T Consensus 465 ~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 465 NYEAAEELEEKVLN 478 (508)
T ss_pred cHHHHHHHHHHHHH
Confidence 88888888877763
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-07 Score=90.53 Aligned_cols=282 Identities=15% Similarity=0.081 Sum_probs=187.5
Q ss_pred HHHHhCCChhHHHHHHHhccCC--C-hHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHh----c-Chh
Q 010837 194 DSYVKGGKTSYARIVFDMMLEK--N-VICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYS----I-SIE 263 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~----~-~~~ 263 (499)
..+...|++++|++.++.-... | ..........+.+.|+.++|..+|..+. .|+...|-..+..+. . ...
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 4567789999999988776543 3 3455667788899999999999999887 566666655555543 1 223
Q ss_pred hHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChH-HHHHHHHhcCCCCh-hHHHHHHHHHHhCCChhHHHHHHHHH
Q 010837 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID-DARRVFDHMQQKNV-FTWTSMIDGYGKNGNPNQALELFCMM 341 (499)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (499)
..+...++++++...-+. ......+.-.+..-..+. .+...+..+....+ .+|+.+-..|....+.+-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 456677778777665432 222222211122212222 23334444444443 45565655565444445555555554
Q ss_pred HHc----C----------CCCCH--HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 010837 342 QEC----C----------VQPNY--VTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQ 404 (499)
Q Consensus 342 ~~~----~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 404 (499)
... + -+|.. .++..+.+.|...|++++|.+++++.+ ...|+ +..|..-.+.|-+.|++++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 332 1 12333 345666778889999999999999998 34674 7788888999999999999
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc--------hhHHHHHHHHhcCChHHHHH
Q 010837 405 ALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG--------AYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 405 a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~ 474 (499)
|.+.++.... ..|...-+-.+..+.+.|+.++|.+++....+.+..+... .....+.+|.+.|++..|++
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999998876 4566667777788899999999999999988877544222 22457788999999999987
Q ss_pred HHHHHH
Q 010837 475 LREKMK 480 (499)
Q Consensus 475 ~~~~~~ 480 (499)
.+..+.
T Consensus 327 ~~~~v~ 332 (517)
T PF12569_consen 327 RFHAVL 332 (517)
T ss_pred HHHHHH
Confidence 776554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-07 Score=87.11 Aligned_cols=268 Identities=12% Similarity=0.020 Sum_probs=199.9
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCC---hHhHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChhhHHHH
Q 010837 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN---VICSTSMISGFMSQGFVEDAEEIFRKTVE--K-DIVVYNAM 254 (499)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l 254 (499)
|..-+........+-+...+++.+..++++.+.+.+ ...+..-|.++...|+..+-..+=.++++ | ...+|-++
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 345566667777788888999999999999987754 44566667788889988887777777762 4 34566655
Q ss_pred HHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCh
Q 010837 255 IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNP 331 (499)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 331 (499)
---|... +..++|.+.|......... =...|-.....|+-.|.-|+|...+..+.+ ....-+--+..-|.+.++.
T Consensus 319 g~YYl~i-~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMI-GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHh-cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 5444444 7777999999877654322 134677788889999999999988877654 1222223345567888999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhc-CC---CC-ChhHHHHHHHHHHhcCCHHHHH
Q 010837 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY-SM---KP-KMEHYACMVDLLGRAGSLEQAL 406 (499)
Q Consensus 332 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~ 406 (499)
+.|.+.|.+.... .+.|+...+-+.-.....+.+.+|..+|+...... .+ .+ ...+++.|..+|.+.+++++|+
T Consensus 397 kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999988774 35566777777776777889999999998776211 00 11 3346888999999999999999
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 407 KFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 407 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..+++... +.+..++.++.-.|...|+++.|.+.|.+.+-..|..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 99998876 5688899999999999999999999999998887766
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.7e-08 Score=79.44 Aligned_cols=173 Identities=18% Similarity=0.170 Sum_probs=150.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDL 395 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 395 (499)
+...+..+|...|+...|..-+++..+.. +.+..++..+...|.+.|..+.|.+.|+... .+.| +..+.|...-.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 45567788999999999999999999863 4455688899999999999999999999998 5677 67888999999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHH
Q 010837 396 LGRAGSLEQALKFVLEMPEKPN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (499)
+|..|++++|...|++....|+ ..+|..+.-+..+.|+.+.|...|++.++.++.. +.+...+.+...+.|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~-~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF-PPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC-ChHHHHHHHHHHhcccchH
Confidence 9999999999999999988554 4688899888899999999999999999999998 8999999999999999999
Q ss_pred HHHHHHHHHhCCCccCcccccccc
Q 010837 472 VTELREKMKLRGVLKDTGCSWVGT 495 (499)
Q Consensus 472 A~~~~~~~~~~~~~~~~~~~~~~~ 495 (499)
|...+++....+. +.....|+.+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~i 214 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGI 214 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHH
Confidence 9999999987776 6665666544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.9e-07 Score=77.73 Aligned_cols=121 Identities=8% Similarity=0.128 Sum_probs=72.2
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCC---------------ChH---H
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR---------------TLS---A 113 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~---~ 113 (499)
...+-+.|++++|...+..+.+.. .++...+..|.-.+.-.|.+.+|.++-+..++. |.. +
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 344457899999999999988765 566666666666666678888888887766531 111 1
Q ss_pred H-----------HHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHH
Q 010837 114 Y-----------NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179 (499)
Q Consensus 114 ~-----------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~ 179 (499)
+ -+|.+..--.-.+++|+++++..... .|+-...|.-+..|. .+..-.+.+.+++..-++
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCy----yKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCY----YKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHH----HhcchhhhHHHHHHHHHH
Confidence 1 11222222233567777777777664 455555555555442 344445555555554443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-06 Score=78.99 Aligned_cols=146 Identities=10% Similarity=0.002 Sum_probs=90.9
Q ss_pred HHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHH
Q 010837 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQ 274 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 274 (499)
+..+.+..++|+..++.....+..+...-...+.+.|++++|+++|+.+.+.+...+...+.+-+.... .+... ..
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~---a~l~~-~~ 163 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA---AALQV-QL 163 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH---HhhhH-HH
Confidence 345788899999988866665666777777888899999999999999876655555544443221101 11111 11
Q ss_pred HHHcccCCCchhHHH---HHHHHHhcCChHHHHHHHHhcC--------CC--C---h-----hHHHHHHHHHHhCCChhH
Q 010837 275 LIKNVFFEDVKLGSA---LVDMYAKCGKIDDARRVFDHMQ--------QK--N---V-----FTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 275 ~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~--------~~--~---~-----~~~~~l~~~~~~~g~~~~ 333 (499)
+......| ..+|.. ....+...|++.+|+++++... +. + + ..--.|.-.+...|+.++
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 22222222 223322 3345677899999999988872 11 1 1 112234455667899999
Q ss_pred HHHHHHHHHHcC
Q 010837 334 ALELFCMMQECC 345 (499)
Q Consensus 334 a~~~~~~m~~~~ 345 (499)
|..+|......+
T Consensus 243 a~~iy~~~i~~~ 254 (652)
T KOG2376|consen 243 ASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHhc
Confidence 999999888775
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-07 Score=84.03 Aligned_cols=196 Identities=11% Similarity=-0.013 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
|..++|...|.+.++..+ .+...|+.+...+...|++++|...|++..+ | +...|..+..++...|++++|.+.++
T Consensus 78 g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 78 GLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444455555555555432 2456788888889999999999999998865 3 45678888888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHH--HHHHHHHhCCC-C-
Q 010837 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE--QALKFVLEMPE-K- 415 (499)
Q Consensus 340 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~-~- 415 (499)
+..+. .|+..........+...++.++|...+++... ...|+...+ .+... ..|+.. ++.+.+.+... .
T Consensus 157 ~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~ 229 (296)
T PRK11189 157 AFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNT 229 (296)
T ss_pred HHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcH
Confidence 98875 44433222222234456789999999977552 223433322 23332 344443 33333333222 1
Q ss_pred ----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 416 ----PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 416 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
....+|..+...+.+.|++++|+..|+++++.+|...+..-..++......
T Consensus 230 ~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 230 ELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 234678899999999999999999999999988755344444555544443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-08 Score=86.94 Aligned_cols=248 Identities=13% Similarity=0.052 Sum_probs=162.2
Q ss_pred HHHhCCChhHHHHHHHhccCC----ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHH
Q 010837 195 SYVKGGKTSYARIVFDMMLEK----NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE 270 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 270 (499)
-+.-.|++..++.-.+ .... ......-+.+++...|+++.++.-......|.......+...+ ...+..+.+..
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~-~~~~~~e~~l~ 87 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYL-SSPSDKESALE 87 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHH-CTSTTHHCHHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHH-hCccchHHHHH
Confidence 3455788888886555 2221 2345566778889999988777666555556655554444333 33344444444
Q ss_pred HHHHHHHcccC-CCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010837 271 VHCQLIKNVFF-EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349 (499)
Q Consensus 271 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 349 (499)
-+.+....... .+..+.......+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 44433333322 23333333445577789999999998876 56777778889999999999999999999874 334
Q ss_pred HHHHHHHHHHHc----ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHH
Q 010837 350 YVTFLGALSACG----HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAA 423 (499)
Q Consensus 350 ~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ 423 (499)
.+...+..++. ...++.+|..+|+++.. ...+++.+.+.+..++...|++++|.+++.+... +.+..+...
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 33444444433 23468999999999874 3456788889999999999999999999988776 345567777
Q ss_pred HHHHHhhcCCH-HHHHHHHHHHHhcCCCC
Q 010837 424 LLSSCRLHDDV-EMANIAANEIFKLNAND 451 (499)
Q Consensus 424 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~ 451 (499)
++......|+. +.+.+.+.++....|..
T Consensus 241 liv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 241 LIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 77777777777 77788888888776653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5e-06 Score=79.87 Aligned_cols=404 Identities=12% Similarity=0.032 Sum_probs=253.2
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC----C-ChHHHHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ----R-TLSAYNY 116 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~ 116 (499)
+-++..|..+--+..+.|+++.+-+.|++....- --....|..+...|..+|.-..|..+++.-.. | ++..+-.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3577888888888899999999999999987664 34667788888889999999999999987653 2 3334433
Q ss_pred HHHHHHh-CCChhhHHHHHHHHHHc--CC--CCChhhHHHHhhhccccc------cCCcCcchhHHHHHHHHHHcCCCCc
Q 010837 117 MIAGYLK-NGQVEESLSLVRKLVSS--GE--RPDGYTFSMILKASTCCR------SNVPLPRNLGRMVHAQILKCDVKAD 185 (499)
Q Consensus 117 li~~~~~-~g~~~~a~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~ 185 (499)
.-..|.+ -|.++++++.-.+.... |. ......|..+--+|.... ..+......+.+.+++.++.+ +.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 3344444 46677777776666552 11 112223333322221110 011111233455566665554 223
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhccC----CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHH--HHh
Q 010837 186 DVLYTALVDSYVKGGKTSYARIVFDMMLE----KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE--GYS 259 (499)
Q Consensus 186 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~--~~~ 259 (499)
+.+...+.--|+..++++.|.+..++..+ .+...|..+.-.+...+++.+|+.+.+.....-..-++.+.. .+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 33333344457778899999988888754 367899999999999999999999987665210000000000 000
Q ss_pred cChhhHHHHHH-------HHH----------HHHH----ccc-------CCCchhHHHHHHHHHhcC---ChHHHHHHHH
Q 010837 260 ISIETARKALE-------VHC----------QLIK----NVF-------FEDVKLGSALVDMYAKCG---KIDDARRVFD 308 (499)
Q Consensus 260 ~~~~~~~~a~~-------~~~----------~~~~----~~~-------~~~~~~~~~l~~~~~~~g---~~~~a~~~~~ 308 (499)
..-++.+++.. +|+ +... .|. .-...++..+.......+ ..+.....+.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 00022222222 111 1110 111 111223333322222111 1111111111
Q ss_pred hcCCCC------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCC
Q 010837 309 HMQQKN------VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382 (499)
Q Consensus 309 ~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 382 (499)
....|+ ...|......+.+.++.++|...+.+.... ..-....|......+...|..++|.+.|.... .+
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~l 713 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---AL 713 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hc
Confidence 111222 235666778888999999999888888764 34456677777778888999999999998887 67
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHH--HHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 383 KP-KMEHYACMVDLLGRAGSLEQALK--FVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 383 ~p-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.| ++.+..++..++.+.|+..-|.. ++..+.. +.+...|..+...+.+.|+.+.|.+.|+...+.....
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 78 57788999999999998887777 8888876 5678899999999999999999999999999876554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.3e-06 Score=78.62 Aligned_cols=294 Identities=10% Similarity=-0.039 Sum_probs=172.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhccCC---C---hHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChh-hHHH--HHH
Q 010837 188 LYTALVDSYVKGGKTSYARIVFDMMLEK---N---VICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIV-VYNA--MIE 256 (499)
Q Consensus 188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~-~~~~--ll~ 256 (499)
.|..+...+...|+.+.+.+.+....+. + ..........+...|++++|.+.+++.. .|+.. .+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~ 87 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHH
Confidence 4555666666677777765555554221 1 1122233445677888888888888766 34332 2221 000
Q ss_pred HHhcChhhHHHHHHHHHHHHHcccCCC-chhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChh
Q 010837 257 GYSISIETARKALEVHCQLIKNVFFED-VKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPN 332 (499)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 332 (499)
......+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..+ .+...+..+...+...|+++
T Consensus 88 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 88 GLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 111112333344444433 1112222 23444566778899999999999998875 35667788888999999999
Q ss_pred HHHHHHHHHHHcCC-CCCH--HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHH-H--HHHHHHHhcCC-----
Q 010837 333 QALELFCMMQECCV-QPNY--VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY-A--CMVDLLGRAGS----- 401 (499)
Q Consensus 333 ~a~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~~~----- 401 (499)
+|...+++...... .|+. ..|..+...+...|++++|..++++........+..... + .++.-+...|.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999998876532 1232 235567778889999999999999976221111222111 1 22333333342
Q ss_pred -HHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC---C-----CCchhHHHHHHHHhcCChHH
Q 010837 402 -LEQALKFVLEM-PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN---D-----RPGAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 402 -~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~-----~~~~~~~l~~~~~~~g~~~~ 471 (499)
++.+....... ..............++...|+.+.|..+++.+...... . ..........++.+.|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 22222222111 11111122235666778899999999999988763322 1 12333445556679999999
Q ss_pred HHHHHHHHHhCC
Q 010837 472 VTELREKMKLRG 483 (499)
Q Consensus 472 A~~~~~~~~~~~ 483 (499)
|.+.+......+
T Consensus 326 A~~~L~~al~~a 337 (355)
T cd05804 326 ALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999998876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-06 Score=81.85 Aligned_cols=188 Identities=15% Similarity=0.256 Sum_probs=138.6
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (499)
..+.+|+.+++.+...+. -...|..+.+-|+..|+++.|+++|.+.- .++--|..|.+.|+|+.|.++-.+..
T Consensus 746 kew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred hhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc
Confidence 566688888888877653 34567788899999999999999998653 45667788999999999998876654
Q ss_pred HcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 010837 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422 (499)
Q Consensus 343 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 422 (499)
|.......|..-..-+-+.|++.+|+++|-.+. .|+. -|.+|-+.|..+..+++.++-....-..|..
T Consensus 819 --~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~ 886 (1636)
T KOG3616|consen 819 --GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHK 886 (1636)
T ss_pred --CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHH
Confidence 233344556555566778899999998875543 4554 4678889999999999988766544456777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
.+..-+-..|+.+.|++-|-++ .-|..-+++|...+.|++|-++-+.
T Consensus 887 ~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 887 HFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 7777888888888888766543 3466667777777777777766554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.6e-06 Score=71.06 Aligned_cols=386 Identities=13% Similarity=0.091 Sum_probs=198.5
Q ss_pred chHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC--CChHHHHH-HHHHHH
Q 010837 46 TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNY-MIAGYL 122 (499)
Q Consensus 46 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-li~~~~ 122 (499)
.-+++.+..+.+..++.+|.+++..-.+.. +.+....+.|...|-+..++..|-..++++.. |...-|.. -...+-
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 346666666666777777777766655554 23556666666667777777777777777654 33333332 233455
Q ss_pred hCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCh
Q 010837 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202 (499)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 202 (499)
+.+.+..|+++...|... |+...-..-+.+. .....+|+
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaA--------------------------------------IkYse~Dl 128 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAA--------------------------------------IKYSEGDL 128 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHH--------------------------------------HhcccccC
Confidence 566677777777666432 2221111111111 11223444
Q ss_pred hHHHHHHHhccC-CChHhHHHHHHHHHhCCCHHHHHHHHHhcCC----CChhhHHHHHHHHhcChhhHHHHHHHHHHHHH
Q 010837 203 SYARIVFDMMLE-KNVICSTSMISGFMSQGFVEDAEEIFRKTVE----KDIVVYNAMIEGYSISIETARKALEVHCQLIK 277 (499)
Q Consensus 203 ~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 277 (499)
..+..+++..+. .+..+.+.......+.|+++.|.+-|+...+ .....|+..+..+.+ ++.+.|++...++++
T Consensus 129 ~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~--~qyasALk~iSEIie 206 (459)
T KOG4340|consen 129 PGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSS--RQYASALKHISEIIE 206 (459)
T ss_pred cchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhh--hhHHHHHHHHHHHHH
Confidence 444444444442 3333333344444445555555555544432 122344444444321 334455555555554
Q ss_pred cccCCCc----------------------------hhHHHHHHHHHhcCChHHHHHHHHhcCC-----CChhHHHHHHHH
Q 010837 278 NVFFEDV----------------------------KLGSALVDMYAKCGKIDDARRVFDHMQQ-----KNVFTWTSMIDG 324 (499)
Q Consensus 278 ~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~ 324 (499)
+|++..+ ..+|.-...+.+.|+++.|.+.+..|.. -|++|...+.-.
T Consensus 207 RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~ 286 (459)
T KOG4340|consen 207 RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM 286 (459)
T ss_pred hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence 4432111 1122223345677899999999988874 366666554332
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHH
Q 010837 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 403 (499)
- ..+++....+-+.-+...+ +-...||..++-.||+..-++.|-.++.+-. ....+- +...|+.|=......-..+
T Consensus 287 n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~-~lTyk~L~~Yly~LLdaLIt~qT~pE 363 (459)
T KOG4340|consen 287 N-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENA-HLTYKFLTPYLYDLLDALITCQTAPE 363 (459)
T ss_pred c-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCc-chhHHHhhHHHHHHHHHHHhCCCCHH
Confidence 2 2455656666666666653 3456788888889999999999998887654 222222 3444443333333445667
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH--HhhcCCHH---HHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 404 QALKFVLEMPEKPNSDVWAALLSS--CRLHDDVE---MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 404 ~a~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
+|.+-++.+...-....-...+.. -...++-. .+++-+++.++.- ..+...-...|.+..++..++++|..
T Consensus 364 ea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~ 439 (459)
T KOG4340|consen 364 EAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRK 439 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHH
Confidence 776665544331000000011111 11111111 1222233332222 12345556667788899999999887
Q ss_pred HHhC
Q 010837 479 MKLR 482 (499)
Q Consensus 479 ~~~~ 482 (499)
-.+-
T Consensus 440 Svef 443 (459)
T KOG4340|consen 440 SVEF 443 (459)
T ss_pred HHhh
Confidence 6553
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.3e-07 Score=76.11 Aligned_cols=282 Identities=11% Similarity=0.071 Sum_probs=178.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHH-HHhcCh
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIE-GYSISI 262 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~-~~~~~~ 262 (499)
+.+.+..+.+..+++.|++++..-.++ +....+.+..+|....++..|-+.|+++- .|...-|...-. .+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A- 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA- 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh-
Confidence 455566667777888888877666543 45667777788888888888888888775 344333332211 11222
Q ss_pred hhHHHHHHHHHHHHHcccCCCch--hHHHHHHHHHhcCChHHHHHHHHhcCC-CChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVK--LGSALVDMYAKCGKIDDARRVFDHMQQ-KNVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
+.+..|+++...|... ++.. +...-.......+++..+..++++... .+..+.+.......+.|+++.|.+-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 4444666666666542 1111 111111123356778888888888773 556666666666678888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCC-------------CCh--------hHHHHHHHH---
Q 010837 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK-------------PKM--------EHYACMVDL--- 395 (499)
Q Consensus 340 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------p~~--------~~~~~l~~~--- 395 (499)
...+-+--.....|+..+. +.+.|+.+.|.++..++.++ |++ ||+ ..-+.++.+
T Consensus 169 aAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 8766533333556766664 44668888888888887743 442 111 112334333
Q ss_pred ----HHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC
Q 010837 396 ----LGRAGSLEQALKFVLEMPE----KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467 (499)
Q Consensus 396 ----~~~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 467 (499)
+.+.|+++.|.+-+..|.- ..|+.|...+.-.-. .+++.+..+-++-+++.+|-| ..|+..++-.|++..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP-~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFP-PETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCC-hHHHHHHHHHHhhhH
Confidence 4678899999999988876 356677665543322 244555555566677778877 889999999999988
Q ss_pred ChHHHHHHHHH
Q 010837 468 KWDSVTELREK 478 (499)
Q Consensus 468 ~~~~A~~~~~~ 478 (499)
-++.|-.++-+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 88888776643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-05 Score=83.99 Aligned_cols=294 Identities=12% Similarity=0.022 Sum_probs=152.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccC----CC--------hHhHHHHHHHHHhCCCHHHHHHHHHhcCC--C--Chh---h
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLE----KN--------VICSTSMISGFMSQGFVEDAEEIFRKTVE--K--DIV---V 250 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~--~~~---~ 250 (499)
......+...|++++|...++.... .+ ......+...+...|++++|...+++... + +.. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3344445556666666666554321 00 01112223345566777777666665431 1 110 0
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHcccCC-----CchhHHHHHHHHHhcCChHHHHHHHHhcCC-------C----C
Q 010837 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFE-----DVKLGSALVDMYAKCGKIDDARRVFDHMQQ-------K----N 314 (499)
Q Consensus 251 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~----~ 314 (499)
....+.......|+.+.|...+.+........ ....+..+...+...|+++.|...+++... + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 11111112223366666666666655421111 112334455666777888887777666442 1 1
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHH-
Q 010837 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECC--VQPN--YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY- 389 (499)
Q Consensus 315 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~- 389 (499)
...+..+...+...|++++|...+.+..... ..+. ...+..+...+...|+.++|...++....-.........+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 1223344455666688888877777664421 1121 2233444556667788888877777764211111100001
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC----C-CCc
Q 010837 390 ----ACMVDLLGRAGSLEQALKFVLEMPEK--PNS----DVWAALLSSCRLHDDVEMANIAANEIFKLNAN----D-RPG 454 (499)
Q Consensus 390 ----~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~ 454 (499)
...+..+...|+.+.|.+++...... ... ..+..+..++...|++++|...++++...... . ...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11123344567788888777665541 111 11345556677778888888887777653211 1 123
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+...+..++.+.|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 55666777778888888887777776543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-07 Score=84.25 Aligned_cols=214 Identities=14% Similarity=0.059 Sum_probs=167.2
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
|+..+|.-.|+..++..+. +...|..|....+..++-..|+..+.+..+- |....-.|.-.|...|.-..|++.++
T Consensus 299 G~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5577888888887776543 6678888888888888888888888887753 56677778888888999899999998
Q ss_pred HHHHcCCC--------CCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 340 MMQECCVQ--------PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 340 ~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
.-.....+ ++...-.. ..+.....+....++|-++....+..+|..++..|.-.|.-.|++++|.+.|+.
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 87654211 00000000 122333445566677777776667667888899999999999999999999999
Q ss_pred CCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 412 MPE-KP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 412 ~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+.. +| |...||.|...++...+.++|+..|+++++..|.. +.+...|+-.|...|.+++|.+.|-..+
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 887 44 66799999999999999999999999999999999 8999999999999999999998776644
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-05 Score=73.72 Aligned_cols=396 Identities=12% Similarity=0.041 Sum_probs=200.7
Q ss_pred HhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC--CC-hHHHHHHHHHHHhCCChhh
Q 010837 53 QHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RT-LSAYNYMIAGYLKNGQVEE 129 (499)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~ 129 (499)
.+....|+++.|...|-+.+... +++...|+.-..+|++.|++++|.+=-.+-.+ |+ ...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34567899999999999999887 56899999999999999999999875555443 43 3479999999999999999
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHhhhccccccCCcCcchhHHHHHHHHHHcC---CCCchhHHHHHHHHHHh-------
Q 010837 130 SLSLVRKLVSSGERPDG-YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD---VKADDVLYTALVDSYVK------- 198 (499)
Q Consensus 130 a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~------- 198 (499)
|+.-|.+=++. .|+. ..++-+..+.. .....++.-..-.++..+...- .......|..++..+-+
T Consensus 89 A~~ay~~GL~~--d~~n~~L~~gl~~a~~--~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLEK--DPSNKQLKTGLAQAYL--EDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhhc--CCchHHHHHhHHHhhh--HHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999987765 4443 33444443320 0000000000001111110000 00000112222211110
Q ss_pred ---CCChhHHHHHHHhc----------------cCC------------C----------hHhHHHHHHHHHhCCCHHHHH
Q 010837 199 ---GGKTSYARIVFDMM----------------LEK------------N----------VICSTSMISGFMSQGFVEDAE 237 (499)
Q Consensus 199 ---~g~~~~A~~~~~~~----------------~~~------------~----------~~~~~~l~~~~~~~g~~~~a~ 237 (499)
..++..+.-.+... ..| + ..-...+..+..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00011111111110 000 0 012334455555555666666
Q ss_pred HHHHhcCCC-ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCC------chhHHHHHHHHHhcCChHHHHHHHHhc
Q 010837 238 EIFRKTVEK-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED------VKLGSALVDMYAKCGKIDDARRVFDHM 310 (499)
Q Consensus 238 ~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 310 (499)
+-+....+. ...+|...+.+..-..+....+........+.|...- ...+..+..+|.+.++++.+...|.+.
T Consensus 245 q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 245 QHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 666555422 2233333333322222333343333333333322100 011111233455555666666666554
Q ss_pred CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhH
Q 010837 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV-TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEH 388 (499)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~ 388 (499)
..+... -+...+....+++....+...- +.|... -...-...+.+.|++..|+..|.+++.. .| |...
T Consensus 325 Lte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~l 394 (539)
T KOG0548|consen 325 LTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARL 394 (539)
T ss_pred hhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhHH
Confidence 321000 0011112223333333332222 222221 1111244556677888888888877732 35 6777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (499)
|..-.-+|.+.|.+..|++-.+...+ ++....|..-..++....+++.|.+.|++.++.+|.. ......+.+++.
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~-~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN-AEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHH
Confidence 77777778888887777776666655 2334455555556666667788888888877777665 444444444444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.8e-07 Score=78.72 Aligned_cols=117 Identities=13% Similarity=0.101 Sum_probs=65.5
Q ss_pred HHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCCh-hhHHHHHHHHh---cChhhHHH
Q 010837 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI-VVYNAMIEGYS---ISIETARK 267 (499)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~ll~~~~---~~~~~~~~ 267 (499)
...++...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+-+. .+...+..++. ..++...+
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHH
Confidence 334566789999999888775 5667777788899999999999999988874422 22222333221 12223444
Q ss_pred HHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC
Q 010837 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (499)
|.-+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555554332 23344444444444444444444444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.4e-07 Score=90.52 Aligned_cols=200 Identities=13% Similarity=0.144 Sum_probs=162.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCCC--------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQK--------NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 354 (499)
+...|-.-|......++.++|+++++++... -...|-++++.-...|.-+...++|++..+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3456777788888899999999999887641 2346788888777778888889999998874 22345678
Q ss_pred HHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHhh
Q 010837 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP---NSDVWAALLSSCRL 430 (499)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~---~~~~~~~l~~~~~~ 430 (499)
.|...|.+.+..++|.++|+.|.++++ -...+|...+..+.+.++-+.|..++.++.+ -| ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 888899999999999999999998776 4556788889999999999999999988776 22 34455555666678
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 431 HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
.||.+++..+|+..+...|.- ...|+.+++.-.+.|+.+.++.+|++....++.+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKR-tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKR-TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccc-hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 899999999999999999888 88999999999999999999999999999888765
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-08 Score=57.06 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=30.5
Q ss_pred cCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcc
Q 010837 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213 (499)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (499)
.|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999999884
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.7e-05 Score=73.32 Aligned_cols=353 Identities=14% Similarity=0.097 Sum_probs=203.2
Q ss_pred ChHHHHHHHH--HHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHc-C--------CCCChh
Q 010837 79 NTNISIKLLI--LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS-G--------ERPDGY 147 (499)
Q Consensus 79 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~~~ 147 (499)
|..+-..+++ .|..-|+.|.|.+-.+.++ +-..|..+.+.|.+..+.+-|.-.+-.|... | -.|+..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 4455555544 3566677777776666553 3456777777777777777666555555432 1 123222
Q ss_pred hHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCC-ChHhHHHHHHH
Q 010837 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISG 226 (499)
Q Consensus 148 ~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~ 226 (499)
.-....-+ ...|..++|+.++++..+.. .|=..|-..|.|++|.++-+.--.- =..||.....-
T Consensus 803 eakvAvLA------ieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 803 EAKVAVLA------IELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKY 867 (1416)
T ss_pred hhHHHHHH------HHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHH
Confidence 11111111 66778889999998877643 3445677789999998887654332 23577777788
Q ss_pred HHhCCCHHHHHHHHHhcCCCChhhHHH----------------------HHHHHhcChhhHHHHHHHHHHHHHcccCCCc
Q 010837 227 FMSQGFVEDAEEIFRKTVEKDIVVYNA----------------------MIEGYSISIETARKALEVHCQLIKNVFFEDV 284 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~~~~----------------------ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 284 (499)
+-..++.+.|++.|++...+--..+.. .-..|..+.|..+.|+.++....+
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------- 940 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------- 940 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------
Confidence 888889999999998764322111111 112222333445555555544433
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC---- 360 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---- 360 (499)
|-++++..+-.|+.++|-++-++- .|......+.+.|-..|++.+|...|.+.+. |...|..|
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKEND 1007 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcC
Confidence 233444455556666666655432 3666777788889999999999998887643 22222222
Q ss_pred -----------cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------------CC
Q 010837 361 -----------GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-------------KP 416 (499)
Q Consensus 361 -----------~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~ 416 (499)
....+.-.|-++|++. |.. ...-+..|-+.|.+.+|+++--+-.+ ..
T Consensus 1008 ~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s 1078 (1416)
T KOG3617|consen 1008 MKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS 1078 (1416)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC
Confidence 1222334444555443 211 12334567788888888776322221 24
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHh----------cC----------------CCCC----CchhHHHHHHHHhc
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFK----------LN----------------ANDR----PGAYVALSNTLAAA 466 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~----------------~~~~----~~~~~~l~~~~~~~ 466 (499)
|+...+....-++...++++|..++-...+ .+ -.++ ......++..|.++
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 555566656666666666666665433321 11 1111 23456788889999
Q ss_pred CChHHHHHHHH
Q 010837 467 GKWDSVTELRE 477 (499)
Q Consensus 467 g~~~~A~~~~~ 477 (499)
|.+..|.+-|.
T Consensus 1159 G~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1159 GAYHAATKKFT 1169 (1416)
T ss_pred cchHHHHHHHh
Confidence 98877765543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-05 Score=75.21 Aligned_cols=340 Identities=13% Similarity=0.085 Sum_probs=180.8
Q ss_pred hccCCCCChHHHHHHHH--HHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHc
Q 010837 103 FDELPQRTLSAYNYMIA--GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180 (499)
Q Consensus 103 ~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~ 180 (499)
|-.+..-|..+-..+++ .|...|+.+.|.+-.+-.+. ...|..+-+.| ....+.+.|+-.+..|...
T Consensus 718 Fvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~Mc-----VkT~RLDVAkVClGhm~~a 786 (1416)
T KOG3617|consen 718 FVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMC-----VKTRRLDVAKVCLGHMKNA 786 (1416)
T ss_pred hcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHh-----hhhccccHHHHhhhhhhhh
Confidence 33444567777777774 36778999999887776653 45677777777 6666666655554444321
Q ss_pred ---------CCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCC-hhh
Q 010837 181 ---------DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD-IVV 250 (499)
Q Consensus 181 ---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 250 (499)
.-.++ .+-..+.-.....|-+++|..+|++... |..|=..|...|.+++|.++-+.-.+-. ..|
T Consensus 787 RgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~T 860 (1416)
T KOG3617|consen 787 RGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNT 860 (1416)
T ss_pred hhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhh
Confidence 11222 2223333345678999999999998865 3345566788999999999886543211 112
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHc-------------------ccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC
Q 010837 251 YNAMIEGYSISIETARKALEVHCQLIKN-------------------VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311 (499)
Q Consensus 251 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (499)
|......+ ...++.+.|++.|+..... .-..|...|..-...+-..|+.|.|+.+|....
T Consensus 861 yy~yA~~L-ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 861 YYNYAKYL-EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHHHHHH-HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 22222222 2225666777766543111 011123333333444444556666666555432
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCC--C--CChh
Q 010837 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM--K--PKME 387 (499)
Q Consensus 312 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~--p~~~ 387 (499)
-|-+++...|-.|+.++|-.+-++ .-|......+...|...|++.+|..+|.+... +.- . ....
T Consensus 940 -----D~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-fsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 940 -----DYFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA-FSNAIRLCKEND 1007 (1416)
T ss_pred -----hhhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhcC
Confidence 344555555666666666665443 22444455566677777777777777766541 000 0 0000
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH--------HHH--hcCCCCCCch
Q 010837 388 HYACMVDLLG--RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN--------EIF--KLNANDRPGA 455 (499)
Q Consensus 388 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~--~~~~~~~~~~ 455 (499)
.-..|..... ...+.-.|-++|++... -....+..|-+.|.+.+|+++.= +++ ..++..++..
T Consensus 1008 ~~d~L~nlal~s~~~d~v~aArYyEe~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1008 MKDRLANLALMSGGSDLVSAARYYEELGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHcch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 0011111111 12223334444444332 11122334556666666665421 111 2445555666
Q ss_pred hHHHHHHHHhcCChHHHHHHHH
Q 010837 456 YVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
.+.-...+....++++|..++-
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 7766777777777777766554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-05 Score=80.75 Aligned_cols=258 Identities=10% Similarity=0.004 Sum_probs=147.8
Q ss_pred HHHHHHhCCChhHHHHHHHhccC----CCh----HhHHHHHHHHHhCCCHHHHHHHHHhcCC-------CCh--hhHHHH
Q 010837 192 LVDSYVKGGKTSYARIVFDMMLE----KNV----ICSTSMISGFMSQGFVEDAEEIFRKTVE-------KDI--VVYNAM 254 (499)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~--~~~~~l 254 (499)
+...+...|++++|...++...+ .+. ...+.+...+...|++++|...+.+... +.. .....+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 34445556666666666655432 111 2334444555666666666666655541 111 111111
Q ss_pred HHHHhcChhhHHHHHHHHHHHHHc----ccCC---CchhHHHHHHHHHhcCChHHHHHHHHhcCC------C--ChhHHH
Q 010837 255 IEGYSISIETARKALEVHCQLIKN----VFFE---DVKLGSALVDMYAKCGKIDDARRVFDHMQQ------K--NVFTWT 319 (499)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~--~~~~~~ 319 (499)
-..+. ..|+.+.|...+++.... +... ....+..+...+...|++++|...+++... + ....+.
T Consensus 538 a~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 538 SEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 11222 236666666666554432 2111 122334455667777999999888877642 1 123344
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHH--HH--HHHHHHHcccCcHHHHHHHHHHchHhcCCCCC---hhHHH
Q 010837 320 SMIDGYGKNGNPNQALELFCMMQECC--VQPNYV--TF--LGALSACGHAGLVDKGREIFESMERDYSMKPK---MEHYA 390 (499)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~--~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~ 390 (499)
.+...+...|+.++|.+.+.+..... ...... .. ...+..+...|+.+.|...+...... ..... ...+.
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~ 695 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHH
Confidence 45667778999999999888875421 111110 10 11123345578999999988776521 11111 11234
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC------C--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 391 CMVDLLGRAGSLEQALKFVLEMPEK------P--NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.+..++...|++++|...+++.... + ...+...+..++...|+.++|...+.++.+.....
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 5677788899999999998887651 1 12356667778889999999999999998866443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-05 Score=68.67 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=27.7
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
++...+++-+|++...++++..+.. ..++..-..+|.-...+++|+.-|+...+
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~d-v~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDD-VQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3344455555555555555555444 45555555555555555555555544433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-06 Score=76.56 Aligned_cols=181 Identities=10% Similarity=-0.024 Sum_probs=113.0
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCC--CC-h---hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHH
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQ--KN-V---FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY--VTFLG 355 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ 355 (499)
...+..+...+.+.|++++|...|+++.+ |+ . ..+..+..++...|++++|...++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 34555566677777777777777776654 21 1 34566677777777777777777777664211111 13444
Q ss_pred HHHHHccc--------CcHHHHHHHHHHchHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010837 356 ALSACGHA--------GLVDKGREIFESMERDYSMKPKM-EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426 (499)
Q Consensus 356 ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 426 (499)
+..++... |+.++|.+.++.+... .|+. ..+..+..... ..... ......+..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~ 174 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHH
Confidence 44444433 5677777777777632 3422 22222211100 00000 001124556
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNAND--RPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
.+.+.|++++|...++++++..+.. ....+..++.++.+.|++++|..+++.+...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7889999999999999999886642 2578899999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5e-05 Score=75.28 Aligned_cols=287 Identities=15% Similarity=0.161 Sum_probs=168.2
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC------------CCChH----HH-
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP------------QRTLS----AY- 114 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~----~~- 114 (499)
..-+-+.+++......++..+..| .-|+.++|+|.+.|..+++-.+- .+.+-+ ++|+. +|
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 333445566666777788888888 57899999999999888765542 222211 11111 11
Q ss_pred -----HHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCC--Cchh
Q 010837 115 -----NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK--ADDV 187 (499)
Q Consensus 115 -----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 187 (499)
..||+.|-.+.-+..-.+. +.+ ..|...|+.++.- .. ..-+++.++.+..+++ .|+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRY---lv~---R~D~~LW~~VL~e------~n----~~rRqLiDqVv~tal~E~~dPe 985 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARY---LVE---RSDPDLWAKVLNE------EN----PYRRQLIDQVVQTALPETQDPE 985 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHH---HHh---ccChHHHHHHHhc------cC----hHHHHHHHHHHHhcCCccCChH
Confidence 1233333222222111110 111 2344455555532 11 1123344444444443 3555
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhccC-C-----ChHhHHHHH---------------------------HHHHhCCCHH
Q 010837 188 LYTALVDSYVKGGKTSYARIVFDMMLE-K-----NVICSTSMI---------------------------SGFMSQGFVE 234 (499)
Q Consensus 188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~l~---------------------------~~~~~~g~~~ 234 (499)
....-+.++...+-..+-+++++++.- + +...-|.++ ..+...+-++
T Consensus 986 ~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 986 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence 566667788888888888888888732 2 112222222 2244555566
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCC
Q 010837 235 DAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN 314 (499)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 314 (499)
+|..+|++.. -+......++... +..+.|.++-+.. ..+.+|..+..+-.+.|.+.+|.+-|-+. .|
T Consensus 1066 EAF~ifkkf~-~n~~A~~VLie~i----~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika--dD 1132 (1666)
T KOG0985|consen 1066 EAFAIFKKFD-MNVSAIQVLIENI----GSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA--DD 1132 (1666)
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHh----hhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc--CC
Confidence 6777666542 2333444444433 4455555444433 34667888999999999999998888665 46
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHH
Q 010837 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372 (499)
Q Consensus 315 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 372 (499)
+..|..+++...+.|.+++-.+.+...++..-.|... +.|+-+|++.+++.+-+++
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 6678889999999999999999888877776666554 3577788888777665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.1e-05 Score=71.95 Aligned_cols=264 Identities=15% Similarity=0.055 Sum_probs=164.4
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHhcC-----CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHH--
Q 010837 217 VICSTSMISGFMSQGFVEDAEEIFRKTV-----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA-- 289 (499)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 289 (499)
...|..+...+...|+.+++.+.+.+.. ..+......+........|+.++|...++...+..+. +...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhH
Confidence 3456666777777888888766666543 2233223333333344458899999999998886432 3333331
Q ss_pred -HHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc
Q 010837 290 -LVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 290 -l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 365 (499)
........+..+.+.+.+...... .......+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 111122345566666666553322 23344556678889999999999999999863 4456677888889999999
Q ss_pred HHHHHHHHHHchHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC--C-HHHH-H--HHHHHHhhcCCHHH
Q 010837 366 VDKGREIFESMERDYSMKPKM--EHYACMVDLLGRAGSLEQALKFVLEMPE-KP--N-SDVW-A--ALLSSCRLHDDVEM 436 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~-~~~~-~--~l~~~~~~~~~~~~ 436 (499)
+++|...++.........|+. ..|..+...+...|++++|.+++++... .| . .... + .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988432222332 3456788889999999999999999754 23 1 1111 1 22333334443333
Q ss_pred HHHH---HHHHHhcCCCCCCchh--HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 437 ANIA---ANEIFKLNANDRPGAY--VALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 437 a~~~---~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+.++ ........+.+ ...+ ...+.++...|+.++|.+.++.+....
T Consensus 244 ~~~w~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 244 GDRWEDLADYAAWHFPDH-GLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHHhhcCcc-cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3332 12111111111 2223 367777889999999999999987543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.4e-05 Score=71.00 Aligned_cols=185 Identities=17% Similarity=0.143 Sum_probs=101.8
Q ss_pred CCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHH
Q 010837 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
.....+..|..+++.+.+... -..-|..+.+.|...|+++.|.++|-+.- .++--|..|.+.|+++.|.++-.
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHH
Confidence 445566677777776655432 22345666777777788888877775532 34556677778888888877777
Q ss_pred hcCCCChh--hHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-CChhHH
Q 010837 242 KTVEKDIV--VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-KNVFTW 318 (499)
Q Consensus 242 ~~~~~~~~--~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~ 318 (499)
+...|... .|.+-..-+-.. |.+.+|.+++-.+.. | ...|.+|-+.|..++.+++..+-.. .-..+.
T Consensus 816 e~~~~e~t~~~yiakaedldeh-gkf~eaeqlyiti~~----p-----~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 816 ECHGPEATISLYIAKAEDLDEH-GKFAEAEQLYITIGE----P-----DKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HhcCchhHHHHHHHhHHhHHhh-cchhhhhheeEEccC----c-----hHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 66655332 222222222122 344344443322211 1 2245566667777776666665432 122344
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHH
Q 010837 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372 (499)
Q Consensus 319 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 372 (499)
..+..-+-..|+...|...|-+..+ |...+..|-.++-+++|.++
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 4555566666777777666654432 33444555555555555554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-05 Score=65.89 Aligned_cols=250 Identities=12% Similarity=0.028 Sum_probs=159.3
Q ss_pred HHHhCCChhHHHHHHHhccC--CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHH
Q 010837 195 SYVKGGKTSYARIVFDMMLE--KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 272 (499)
-+.-.|.+..++..-..... .+...-.-+.++|...|.+.....-......+.......+-.........-+....+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~ 96 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLY 96 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence 34446777777665554422 2444445566777778877655544433332333333222222222222333344555
Q ss_pred HHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 010837 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352 (499)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 352 (499)
+.+.......+......-...|.+.|++++|.+..+.. .+......=...+.+..+++-|.+.+++|.+- .+..|
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~t 171 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDAT 171 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHH
Confidence 66666555444444444455688999999999998883 33344444455667788899999999999863 35667
Q ss_pred HHHHHHHHc----ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 010837 353 FLGALSACG----HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK--PNSDVWAALLS 426 (499)
Q Consensus 353 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~ 426 (499)
.+.|..++. ..+.+..|.-+|+++.+ ...|+..+.+....++...|++++|..++++...+ .+..+...++-
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 776666654 34568899999999984 35678888888888889999999999999988873 45666666665
Q ss_pred HHhhcC-CHHHHHHHHHHHHhcCCCC
Q 010837 427 SCRLHD-DVEMANIAANEIFKLNAND 451 (499)
Q Consensus 427 ~~~~~~-~~~~a~~~~~~~~~~~~~~ 451 (499)
.....| +.+-..+.+.+.....|+.
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 555555 4455556677776666654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00037 Score=64.80 Aligned_cols=149 Identities=11% Similarity=0.074 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFV 409 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 409 (499)
.+....+++++...-..--..+|..++..-.+..-+..|..+|.++.+. +..+ .+.++++++.-|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 5556666666654322222345667777777777788888888888743 5566 7777788887554 57778888888
Q ss_pred HhCCCC-CCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC--CCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 410 LEMPEK-PNSD-VWAALLSSCRLHDDVEMANIAANEIFKLNAN--DRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 410 ~~~~~~-~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+--..+ +|.. .-...+.-+...++-..|..+|++.+..+.. -...+|..++..-..-|+...+.++-+++..
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 876652 4443 3345556667778888888888888877333 2346788888888888888888888777654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-06 Score=71.44 Aligned_cols=120 Identities=14% Similarity=0.087 Sum_probs=65.9
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHH-HhcCC--HH
Q 010837 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLL-GRAGS--LE 403 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~~~--~~ 403 (499)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++.. .+.| +...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 344455555555554432 3455556666666666666666666666655 2334 445555555543 44444 35
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 404 QALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 404 ~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+|.+++++... +.+..++..+...+...|++++|+..|+++.+..+..
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 66666666555 2344555555556666666666666666666655544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.7e-08 Score=54.42 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=18.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 010837 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412 (499)
Q Consensus 381 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (499)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555666666666666666666555555
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.8e-05 Score=69.41 Aligned_cols=369 Identities=14% Similarity=0.118 Sum_probs=214.9
Q ss_pred HHHHcCCChhHHHHHhccCC---CCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC-hhhHHHHhhhccccccCC
Q 010837 88 ILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD-GYTFSMILKASTCCRSNV 163 (499)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~ 163 (499)
.+.+..|+++.|...|-+.. ++|-+.|..-..+|+..|++++|++=-.+-++ +.|+ ...|+-.-.++ ..
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~-----~~ 82 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAAL-----FG 82 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHH-----Hh
Confidence 45567899999999998765 45667788888999999999998876666655 3555 34677666666 77
Q ss_pred cCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHH------HhccC-C------ChHhHHHHHHHH---
Q 010837 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF------DMMLE-K------NVICSTSMISGF--- 227 (499)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------~~~~~-~------~~~~~~~l~~~~--- 227 (499)
.|+++.|..-|..-++.. +.+...++.|.+++... .. +.+.| ..+.. + ....|..++..+
T Consensus 83 lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred cccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 888899988888766654 44556777777777211 00 11111 11100 0 011222222221
Q ss_pred -------HhCCCHHHHHHHHHhcC----------------CC------------Ch----------hhHHHHHHHHhcCh
Q 010837 228 -------MSQGFVEDAEEIFRKTV----------------EK------------DI----------VVYNAMIEGYSISI 262 (499)
Q Consensus 228 -------~~~g~~~~a~~~~~~~~----------------~~------------~~----------~~~~~ll~~~~~~~ 262 (499)
..-.++..+.-.+.... .| |. .....+.++..+.
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk- 237 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK- 237 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh-
Confidence 11111112221111110 01 00 0112222222222
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCCh---hHHHH-------HHHHHHhCCChh
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV---FTWTS-------MIDGYGKNGNPN 332 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~-------l~~~~~~~g~~~ 332 (499)
.+++.+.+-+....+.. -+...++....+|...|.+.++...-+...+..- .-|+. +..+|.+.++++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 44445555555554443 3444455555666666666665555444333211 11111 233455556666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME-HYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
.|...|.+....-..|+.. .+....+++........ -+.|... --..-...+.+.|++..|++.|.+
T Consensus 316 ~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 6666666654433332221 12223333333333222 3334321 112225567789999999999999
Q ss_pred CCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 412 MPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 412 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+.. +.|...|..-..+|.+.|.+..|+.-.+..++.+|.. ...|..=+.++....+|+.|.+.|++-.+.+
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~-~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF-IKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 887 3567789999999999999999999999999998888 7888888888888899999999998877654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-05 Score=75.49 Aligned_cols=414 Identities=14% Similarity=0.073 Sum_probs=207.2
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCC-hHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCCh
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPN-TNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQV 127 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 127 (499)
+..|.+.. ...+...|=+..+. .++ ...|..|...|+...+...|.+.|+...+ .+..++......|++..++
T Consensus 466 a~~~~rK~-~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 466 ALGCMRKN-SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHhhhh-HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH
Confidence 34444433 44444444443333 233 25677777777777777778888777654 3555677777788888888
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHH
Q 010837 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207 (499)
Q Consensus 128 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 207 (499)
+.|..+.-..-+.. +--...++-+-++... ...++...+..-|+...+.. +-|...|..+..+|.++|++..|.+
T Consensus 543 e~a~~I~l~~~qka-~a~~~k~nW~~rG~yy---Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKA-PAFACKENWVQRGPYY---LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred HHHHHHHHHHhhhc-hHHHHHhhhhhccccc---cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHH
Confidence 88877743332221 1111122222221100 45555555666666555443 4455677778888888888888888
Q ss_pred HHHhccCCChH-hHHH--HHHHHHhCCCHHHHHHHHHhcCC------C---Ch-hhHHHHH-----HHH-hcChhhHHHH
Q 010837 208 VFDMMLEKNVI-CSTS--MISGFMSQGFVEDAEEIFRKTVE------K---DI-VVYNAMI-----EGY-SISIETARKA 268 (499)
Q Consensus 208 ~~~~~~~~~~~-~~~~--l~~~~~~~g~~~~a~~~~~~~~~------~---~~-~~~~~ll-----~~~-~~~~~~~~~a 268 (499)
+|.+...-++. .|.. ..-.-+..|.+.+|+..+..... + +. .++..+. .++ .+..+..+++
T Consensus 618 vF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 618 VFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred hhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 88666443221 1111 22233445555555555544320 0 00 0000000 000 0000111111
Q ss_pred HH-------------------------HHHH-----------------HHHcccC--------------------CCchh
Q 010837 269 LE-------------------------VHCQ-----------------LIKNVFF--------------------EDVKL 286 (499)
Q Consensus 269 ~~-------------------------~~~~-----------------~~~~~~~--------------------~~~~~ 286 (499)
++ +|-+ ....+.- .+..+
T Consensus 698 ie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~ 777 (1238)
T KOG1127|consen 698 IESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYP 777 (1238)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccch
Confidence 11 1111 1111111 11122
Q ss_pred HHHHHHHHHh----c----CChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010837 287 GSALVDMYAK----C----GKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355 (499)
Q Consensus 287 ~~~l~~~~~~----~----g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 355 (499)
|..|+..|.+ . .+...|...+.+..+ .+...|+.|.-. ...|++.-+...|-+-... .+-+..+|..
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~N 855 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLN 855 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheec
Confidence 2222222221 0 111234444444332 344555555444 4445555555555444433 1334455666
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCHHHHHHHHHH
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-------KPNSDVWAALLSS 427 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~l~~~ 427 (499)
+...+.+..+++.|...|.... .+.| +...|-.........|+.-++..+|..-.+ -+....|......
T Consensus 856 lgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 6666677788888888888877 5666 555565555555567777777777765211 1444444444444
Q ss_pred HhhcCCHHHHHHHH----------HHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 428 CRLHDDVEMANIAA----------NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 428 ~~~~~~~~~a~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
....|+.++-+... ++.....|+. ..+|...+......+.+.+|.+...+.
T Consensus 933 h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~-~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKISSASLALSYYFLGHPQL-CFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHhccchHHHHHHhhhhhhhHHHHHHHHhcCcch-hHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55566655544433 3333344544 667777777777777777777666554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-06 Score=81.02 Aligned_cols=201 Identities=11% Similarity=0.032 Sum_probs=147.5
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCM 340 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (499)
|-...|..+++.+.. +.-++.+|...|+-.+|..+..+-.+ |++..|..+.+......-+++|.++.+.
T Consensus 412 GitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~ 482 (777)
T KOG1128|consen 412 GITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNY 482 (777)
T ss_pred chHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhh
Confidence 555566666665433 34466677777777777776655443 5666677666666555556666666655
Q ss_pred HHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CC
Q 010837 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-K-PN 417 (499)
Q Consensus 341 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~ 417 (499)
.... .-..+.......++++++.+.|+.-. .+.| ...+|-.+..+..+.+++..|.+.|..... . .+
T Consensus 483 ~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 483 ISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred hhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 3321 11112222234678888888888766 3444 567788888888999999999999988876 4 45
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
...||.+-.+|.+.|+-.+|...++++.+.+-++ ...|...+-...+.|.+++|.+.+.++.+..
T Consensus 553 ~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 553 AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 6799999999999999999999999999999666 8899999999999999999999999887543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-05 Score=80.83 Aligned_cols=165 Identities=10% Similarity=0.050 Sum_probs=114.1
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY-VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYAC 391 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 391 (499)
++..+..|.....+.|+.++|..+++...+ ..|+. .....+..++.+.+++++|....++.. ...| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 467777788888888888888888888877 45554 456667777888888888888888887 3355 5666777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCCh
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 469 (499)
+..++.+.|++++|..+|+++.. .|+ ..++..+..++...|+.++|...|+++++....- ...|+.++. +.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~-~~~~~~~~~------~~ 232 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG-ARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc-hHHHHHHHH------HH
Confidence 77888888888888888888875 333 6778888888888888888888888887765544 344444332 22
Q ss_pred HHHHHHHHHHHhCCCccCccc
Q 010837 470 DSVTELREKMKLRGVLKDTGC 490 (499)
Q Consensus 470 ~~A~~~~~~~~~~~~~~~~~~ 490 (499)
..-..+++++.-.+.-.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPV 253 (694)
T ss_pred HHHHHHHHHcCcccccCCCce
Confidence 333445555544443333333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-06 Score=68.52 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=50.5
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcC
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHD 432 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 432 (499)
...++...|++++|...|+... ...| +...|..+..++.+.|++++|+..|++... +.+...+..+..++...|
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3444445555555555555554 2233 444555555555555555555555555544 234445555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhHH
Q 010837 433 DVEMANIAANEIFKLNANDRPGAYVA 458 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~ 458 (499)
+.++|+..++..++..|.. +..+..
T Consensus 107 ~~~eAi~~~~~Al~~~p~~-~~~~~~ 131 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYAD-ASWSEI 131 (144)
T ss_pred CHHHHHHHHHHHHHhCCCC-hHHHHH
Confidence 5555555555555555544 344433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-06 Score=78.08 Aligned_cols=248 Identities=16% Similarity=0.141 Sum_probs=173.3
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCCh
Q 010837 224 ISGFMSQGFVEDAEEIFRKTVEKD---IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300 (499)
Q Consensus 224 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 300 (499)
..-+.+.|++.+|.-.|+..++.| ...|..|-...... +.-..|+..+.+..+..+. +....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN-E~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN-ENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc-cchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 344678888888888888777433 34555555555555 4444677777777765432 455666777788888888
Q ss_pred HHHHHHHHhcCCCCh-hHHHHHH---------HHHHhCCChhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHcccCcHHHH
Q 010837 301 DDARRVFDHMQQKNV-FTWTSMI---------DGYGKNGNPNQALELFCMM-QECCVQPNYVTFLGALSACGHAGLVDKG 369 (499)
Q Consensus 301 ~~a~~~~~~~~~~~~-~~~~~l~---------~~~~~~g~~~~a~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~a 369 (499)
..|...++....... ..|...- ..+.....+....++|-++ ...+..+|......|.-.|--.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 889888887643110 0010000 1112222334455566555 4444457888888888888899999999
Q ss_pred HHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 370 REIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 370 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
.+.|+.+. .++| |..+||.|.-.+....+.++|+.-|.++.+ +|. +.+...|.-.|...|.+++|...|-.++.
T Consensus 450 iDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998 5678 788999999999999999999999999988 665 45667788899999999999999888776
Q ss_pred cCCC---------CCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 447 LNAN---------DRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 447 ~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
.... .+..+|.+|=.++...++.|.+.++.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 4332 11247778878888888877555543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-06 Score=69.35 Aligned_cols=108 Identities=13% Similarity=0.016 Sum_probs=92.8
Q ss_pred HHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 370 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
+.++++.. .+.|+. +..+...+...|++++|...|+.... +.+...|..+..++...|++++|...|+++.+.
T Consensus 13 ~~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555555 445653 55677888999999999999999876 457889999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 448 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+|.. +..+..++.++.+.|++++|...++...+..
T Consensus 88 ~p~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9988 9999999999999999999999999987743
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.4e-06 Score=73.32 Aligned_cols=181 Identities=13% Similarity=0.008 Sum_probs=123.3
Q ss_pred ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCC--CchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-Chh---HH
Q 010837 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE--DVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVF---TW 318 (499)
Q Consensus 247 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~---~~ 318 (499)
....+......+... ++++.|...++.+.+..... ....+..+..++.+.|++++|...++++.+ | +.. .+
T Consensus 32 ~~~~~~~~g~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDS-GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 344555555566555 88899999999998865421 124667788999999999999999999875 3 222 45
Q ss_pred HHHHHHHHhC--------CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHH
Q 010837 319 TSMIDGYGKN--------GNPNQALELFCMMQECCVQPNY-VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389 (499)
Q Consensus 319 ~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 389 (499)
..+..++... |+.++|.+.++++.+. .|+. .....+.... .. ..... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~------~~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YL------RNRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HH------HHHHH---------HHH
Confidence 5555666554 7789999999999875 3443 2222221110 00 00000 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 010837 390 ACMVDLLGRAGSLEQALKFVLEMPE-KP----NSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (499)
..+...|.+.|++++|+..+++... .| ....+..+..++...|++++|...++.+....+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3466778899999999999988775 23 346888899999999999999998888776554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00017 Score=62.98 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHH---HHHHhCCChhhHHHHHHHHHHcCCCCCh
Q 010837 79 NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI---AGYLKNGQVEESLSLVRKLVSSGERPDG 146 (499)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 146 (499)
++.-.-.+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.=|.+.++. +||-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF 105 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDF 105 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccH
Confidence 4455556677777788888888888887777777666654 4567777777777777777663 5653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-05 Score=66.34 Aligned_cols=147 Identities=18% Similarity=0.122 Sum_probs=70.5
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcH
Q 010837 290 LVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366 (499)
Q Consensus 290 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 366 (499)
+-..+...|+-+....+...... .|.......+....+.|++.+|...+.+.... -++|..+|+.+.-+|.+.|+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 33444444444444444444221 13333444555555555555555555555443 244555555555555555555
Q ss_pred HHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHhhcCCHHHHHHH
Q 010837 367 DKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPEK--PNSDVWAALLSSCRLHDDVEMANIA 440 (499)
Q Consensus 367 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~ 440 (499)
+.|..-|.... .+.| +...++.|...|.-.|+.+.|..++...... -|...-..+.......|++++|..+
T Consensus 151 ~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 151 DEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555554 2223 3334455555555555555555555444431 2344444444455555555555444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-05 Score=67.93 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=107.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC
Q 010837 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS 401 (499)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 401 (499)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ ..| +...|..|...|...|+
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCC
Confidence 456677777765444322221 10 122235666777777777763 244 77888888888889999
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHH-hhcCC--HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 402 LEQALKFVLEMPE--KPNSDVWAALLSSC-RLHDD--VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 402 ~~~a~~~~~~~~~--~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
+++|...|++... +.+...+..+..++ ...|+ .++|.++++++++.+|.. ..++..++..+.+.|++++|...+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE-VTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988776 34667777777764 56666 588999999999988887 888888999999999999999999
Q ss_pred HHHHhCCCccC
Q 010837 477 EKMKLRGVLKD 487 (499)
Q Consensus 477 ~~~~~~~~~~~ 487 (499)
+++.+..-.-+
T Consensus 168 ~~aL~l~~~~~ 178 (198)
T PRK10370 168 QKVLDLNSPRV 178 (198)
T ss_pred HHHHhhCCCCc
Confidence 98877654433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0026 Score=63.82 Aligned_cols=384 Identities=11% Similarity=0.073 Sum_probs=215.3
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCC--CChHHHHHHHHHHHcCCChhHHHHHhccCC-CCC-----hHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK--PNTNISIKLLILHLKCGALKYAGQMFDELP-QRT-----LSA 113 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-----~~~ 113 (499)
+.+...|+.++.-- -.--+++.++..+.+++ -|+...+..++++...+-..+-+++++++. +++ ...
T Consensus 949 R~D~~LW~~VL~e~-----n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nL 1023 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEE-----NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNL 1023 (1666)
T ss_pred ccChHHHHHHHhcc-----ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhh
Confidence 45666677666321 11224666777766553 355666677788888888888888888775 332 223
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHH
Q 010837 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193 (499)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (499)
-|.||-...+.. ...+.+..+++-..+ .|+... .+ ...+-.++|..+|+.. ..+....+.|+
T Consensus 1024 QnLLiLtAikad-~trVm~YI~rLdnyD-a~~ia~------ia-----i~~~LyEEAF~ifkkf-----~~n~~A~~VLi 1085 (1666)
T KOG0985|consen 1024 QNLLILTAIKAD-RTRVMEYINRLDNYD-APDIAE------IA-----IENQLYEEAFAIFKKF-----DMNVSAIQVLI 1085 (1666)
T ss_pred hhhHHHHHhhcC-hHHHHHHHHHhccCC-chhHHH------HH-----hhhhHHHHHHHHHHHh-----cccHHHHHHHH
Confidence 445555544443 344555555554332 233222 11 3444456666666643 33444444444
Q ss_pred HHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHH
Q 010837 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 273 (499)
+ ..+.++.|.++-++..+| ..|+.+..+-.+.|.+.+|.+-|-+.. |+..|..++....+. |.+++-..++.
T Consensus 1086 e---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~-~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1086 E---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRT-GKYEDLVKYLL 1157 (1666)
T ss_pred H---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 3 345677777777776554 357778888888888888877776544 444566777777666 77777777777
Q ss_pred HHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----------------------CChhHHHHHHHHHHhCCC
Q 010837 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----------------------KNVFTWTSMIDGYGKNGN 330 (499)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~g~ 330 (499)
..++..-.|... +.|+-+|++.+++.+.++++..-.. .++.-|..|...+...|+
T Consensus 1158 MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1158 MARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666665544433 4577778888877776665432110 133344555555555555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRAGSLEQALKF 408 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~ 408 (499)
++.|.+.-++ ..+..||..+-.+|...+.+.-|. -+|+.. ...-..-|+.-|-..|-+++.+.+
T Consensus 1236 yQ~AVD~aRK------Ans~ktWK~VcfaCvd~~EFrlAQ--------iCGL~iivhadeLeeli~~Yq~rGyFeElIsl 1301 (1666)
T KOG0985|consen 1236 YQGAVDAARK------ANSTKTWKEVCFACVDKEEFRLAQ--------ICGLNIIVHADELEELIEYYQDRGYFEELISL 1301 (1666)
T ss_pred HHHHHHHhhh------ccchhHHHHHHHHHhchhhhhHHH--------hcCceEEEehHhHHHHHHHHHhcCcHHHHHHH
Confidence 5555544332 224456666666665554443321 123332 334456677777778888888888
Q ss_pred HHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-------CCchhHHHHHHHHhcCChHHHH
Q 010837 409 VLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-------RPGAYVALSNTLAAAGKWDSVT 473 (499)
Q Consensus 409 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~ 473 (499)
++.... +.....|+-|.-.|.+- ++++..+.++-....---| ....|..++-.|.+-..+|.|.
T Consensus 1302 ~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1302 LEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 777665 34445555555445443 3444444443332211000 1345666666666665555543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0018 Score=60.38 Aligned_cols=435 Identities=10% Similarity=0.063 Sum_probs=251.3
Q ss_pred CCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC--CCChHHHHHH
Q 010837 40 SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP--QRTLSAYNYM 117 (499)
Q Consensus 40 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 117 (499)
.+|.|..+|..||+-+... ..+++++.++++... ++-....|..-+..-.+..+++..+++|.+-. .-++..|...
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 3578999999999987666 999999999999865 35577889999999999999999999999755 3577888887
Q ss_pred HHHHHhC-CChhh----HHHHHHHH-HHcCCCCChh-hHH---HHhhhcccccc-CCcCcchhHHHHHHHHHHcCCCC--
Q 010837 118 IAGYLKN-GQVEE----SLSLVRKL-VSSGERPDGY-TFS---MILKASTCCRS-NVPLPRNLGRMVHAQILKCDVKA-- 184 (499)
Q Consensus 118 i~~~~~~-g~~~~----a~~~~~~m-~~~g~~p~~~-~~~---~ll~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~-- 184 (499)
|+.--+. |+... ..+.|+-. .+-|+.+-.. .|+ ..++..-..+. ......+..+.+++.+...-+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 7654432 33222 23334433 3335444332 222 33332200000 12223445556666655322111
Q ss_pred ----chhHHHHHHHH-------HHhCCChhHHHHHHHhccC------C--------C-------hHhHHHHHHHHHhCCC
Q 010837 185 ----DDVLYTALVDS-------YVKGGKTSYARIVFDMMLE------K--------N-------VICSTSMISGFMSQGF 232 (499)
Q Consensus 185 ----~~~~~~~l~~~-------~~~~g~~~~A~~~~~~~~~------~--------~-------~~~~~~l~~~~~~~g~ 232 (499)
|-..|..=|+. --+...+..|.++++++.. . + +..|-.+|..=..++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 11111111111 1123445666666666521 0 0 1123333332111110
Q ss_pred H--------HHHHHHHHhcC-----CCChh-hHHHHHHHHhc---Chh-------hHHHHHHHHHHHHHcccCCCchhHH
Q 010837 233 V--------EDAEEIFRKTV-----EKDIV-VYNAMIEGYSI---SIE-------TARKALEVHCQLIKNVFFEDVKLGS 288 (499)
Q Consensus 233 ~--------~~a~~~~~~~~-----~~~~~-~~~~ll~~~~~---~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (499)
- ....-.+++.. .|+.. .|...+...++ ..+ ..+++..+++..+..-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111111111 11110 01111111110 011 1334455555544433333333333
Q ss_pred HHHHHHHhcC---ChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 010837 289 ALVDMYAKCG---KIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP-NYVTFLGALSAC 360 (499)
Q Consensus 289 ~l~~~~~~~g---~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~ 360 (499)
.+.+.--..- ..+.....++++.. .-..+|-.+|..-.+..-+..|..+|.+..+.+..+ +....++++.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 3332111111 23444455555443 233467778888888888999999999999998888 677888888877
Q ss_pred cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHhhcCCHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK-----PNSDVWAALLSSCRLHDDVE 435 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~ 435 (499)
|. ++.+-|.++|+.-.+++|-.| .--...++-+...++-..+..+|++...+ .....|..++.--..-||..
T Consensus 413 cs-kD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred hc-CChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 65 899999999999887665444 33456777788899999999999998874 23479999999999999999
Q ss_pred HHHHHHHHHHhcCC---CCCCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 436 MANIAANEIFKLNA---NDRPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 436 ~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
.+.++-+++...-+ ++....-..++.-|.-.+.+..-..=++.+
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 99999888877655 333455566677776666655544444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-05 Score=75.69 Aligned_cols=190 Identities=15% Similarity=0.097 Sum_probs=159.7
Q ss_pred cCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
.+|-...-..+...+.+.|-...|..+|++. ..|...+.+|+..|+..+|..+..+..+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444445567888899999999999999974 5788889999999999999999988877 48999999999999
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHH
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMA 437 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 437 (499)
.....-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+ +-...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88888899999998876632 112233333457999999999988766 34567999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
.+.|.......|.. ...|+.+..+|.+.|+-.+|...+++..+-+..
T Consensus 539 v~aF~rcvtL~Pd~-~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDN-AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHHHHHhhcCCCc-hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 99999999999998 999999999999999999999999999887743
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00013 Score=74.90 Aligned_cols=207 Identities=15% Similarity=0.196 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHHHHHcc-cCC---CchhHHHHHHHHHhcCChHHHHHHHHhcCCC--ChhHHHHHHHHHHhCCChhHHHH
Q 010837 263 ETARKALEVHCQLIKNV-FFE---DVKLGSALVDMYAKCGKIDDARRVFDHMQQK--NVFTWTSMIDGYGKNGNPNQALE 336 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 336 (499)
+..++|.++.++.+..- +.- -..+|.++++.-..-|.-+...++|+++.+- ....|..|...|.+.+.+++|.+
T Consensus 1472 sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~e 1551 (1710)
T KOG1070|consen 1472 SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADE 1551 (1710)
T ss_pred hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHH
Confidence 55555555555554431 111 1224555555555556667777788777652 34567778888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK---MEHYACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 337 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
+++.|.+. +.-....|...+..+.+.++-+.|..++.++.+. -|. .......+..-.+.|+.+++..+|+...
T Consensus 1552 ll~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll 1627 (1710)
T KOG1070|consen 1552 LLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLL 1627 (1710)
T ss_pred HHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHH
Confidence 88888775 4455667888888888888888888888887732 332 4445555666677888888888888777
Q ss_pred C--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC--CchhHHHHHHHHhcCChHHHH
Q 010837 414 E--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR--PGAYVALSNTLAAAGKWDSVT 473 (499)
Q Consensus 414 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 473 (499)
. +.....|+..++.-.++|+.+.++.+|++++..+..+. ...|...+..--+.|+-+.++
T Consensus 1628 ~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1628 SAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 6 33567888888888888888888888888888777652 224455555445556544333
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.6e-06 Score=65.09 Aligned_cols=96 Identities=8% Similarity=0.000 Sum_probs=45.0
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhh
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRL 430 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~ 430 (499)
...+...+...|+.++|...++.+... + +.+...+..+...+.+.|++++|...+++... +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY-D-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 333444444555555555555554421 1 11344444455555555555555555554433 2233444444445555
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 010837 431 HDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~ 450 (499)
.|++++|...+++..+..+.
T Consensus 98 ~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGE 117 (135)
T ss_pred cCCHHHHHHHHHHHHHhccc
Confidence 55555555555555554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00011 Score=67.43 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=62.4
Q ss_pred ccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCCHHHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~ 438 (499)
..|++++|+..++.+.. -.| |+.......+.+.+.++.++|.+.++++.. .|+ ....-.+..++.+.|++++|+
T Consensus 318 ~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 44566666666666552 233 444444555556666666666666666555 344 334444555566666666666
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHH
Q 010837 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
.++++.....|+. +..|..|.++|...|+..+|....-
T Consensus 395 ~~L~~~~~~~p~d-p~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 395 RILNRYLFNDPED-PNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHhhcCCCC-chHHHHHHHHHHHhCchHHHHHHHH
Confidence 6666666666555 5666666666666555555544433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.9e-05 Score=67.22 Aligned_cols=125 Identities=10% Similarity=0.002 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhcCC--CChh-hHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHH
Q 010837 219 CSTSMISGFMSQGFVEDAEEIFRKTVE--KDIV-VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295 (499)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (499)
++..+-..+...+..++|+.++.++++ |+.. .|+.--..+...+...++++..++.+.+...+ +..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 344444455556666666666666653 2221 22222222222212345555555555554332 2223333332333
Q ss_pred hcCCh--HHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 296 KCGKI--DDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 296 ~~g~~--~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
+.|+. +++..+++++.+ .|..+|+...-++...|+++++++.++++.+.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33331 344444444432 24444555545555555555555555555544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0041 Score=61.69 Aligned_cols=217 Identities=10% Similarity=0.028 Sum_probs=138.2
Q ss_pred CccCCCCcccccccCCCCCcchHHHHHHhh--hCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHh
Q 010837 26 NQTFPPKLQNYDSLSNPLTATSLPSALQHY--INSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103 (499)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 103 (499)
.++|...+.....+-.......|..+++++ .+.|..++|..+++.....+.. |..+...+-..|.+.++.++|..++
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444555555555555555556677777766 4789999999999988777644 8899999999999999999999999
Q ss_pred ccCCC--CChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcC-----cchhHHHHHHH
Q 010837 104 DELPQ--RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL-----PRNLGRMVHAQ 176 (499)
Q Consensus 104 ~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~-----~~~~a~~~~~~ 176 (499)
++..+ |+......+..+|+|.+++.+-.++=-+|-+. .+-+.+.|=.++............ -...|....+.
T Consensus 101 e~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 101 ERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 99986 55455556667788888776544443333332 233444544555444322111111 12345566666
Q ss_pred HHHcC-CCCchhHHHHHHHHHHhCCChhHHHHHHHh-c----cCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 177 ILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDM-M----LEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 177 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
+.+.+ -.-+..-.-.-...+-..|++++|.+++.. . ...+...-+.-+..+...+++.+..++-.++.
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 65544 222222222333455678889999998833 2 22344555566777888888888887777766
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.4e-05 Score=64.31 Aligned_cols=122 Identities=10% Similarity=0.052 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 010837 287 GSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363 (499)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 363 (499)
.+..+....+.|++..|...|++... +|...|+.+.-+|.+.|++++|..-|.+..+. ...+...++.+.-.+.-.
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHc
Confidence 33344555555555555555555443 24445555555555555555555555555443 122333444444444445
Q ss_pred CcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
|+.+.|..++...... -.-+..+-..|.......|++++|.++...
T Consensus 182 gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 182 GDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred CCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 5555555555544421 111344444455555555555555554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.3e-05 Score=75.73 Aligned_cols=232 Identities=11% Similarity=0.069 Sum_probs=132.1
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcC
Q 010837 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261 (499)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 261 (499)
+...+..|+..+...+++++|.++.+...+. ....|..+...+.+.++.+++..+ .+. ......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l-----------~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI-----------DSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh-----------hhcccc
Confidence 4457778888888888888888888866443 234455555567777776666554 221 111111
Q ss_pred hhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHH
Q 010837 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELF 338 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (499)
..+..+..+...+.+.+ -+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|.+++
T Consensus 97 -~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 -LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred -cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 22222333333333322 2334566677788888888888888887765 3667777777777777 888888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 010837 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417 (499)
Q Consensus 339 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 417 (499)
.+.... +...+++..+..+|.++.. ..| +...+..+.+.....-. ..--
T Consensus 173 ~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~~~------------~~~~ 222 (906)
T PRK14720 173 KKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGHRE------------FTRL 222 (906)
T ss_pred HHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhhhc------------cchh
Confidence 776553 3344455555555655551 123 22222221111111100 1112
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 010837 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464 (499)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (499)
+.++..+-..|...++++++..+++.+++..+.+ ..+...++.+|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n-~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN-NKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc-hhhHHHHHHHHH
Confidence 2344444455666667777777777777777665 566666666665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00017 Score=72.29 Aligned_cols=142 Identities=13% Similarity=0.125 Sum_probs=112.8
Q ss_pred cCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010837 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356 (499)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 356 (499)
...++..+..|.....+.|++++|..+++...+ | +......+..++.+.+++++|+..+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 444577888889999999999999999998875 4 45677778889999999999999999998853 3345566777
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALL 425 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~ 425 (499)
..++.+.|++++|..+|+++.. -.| +...+..+..++...|+.++|...|++..+ .+....|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 7888899999999999999984 234 467888888899999999999999998876 35555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.2e-05 Score=67.81 Aligned_cols=200 Identities=15% Similarity=0.108 Sum_probs=107.7
Q ss_pred cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcC-ChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCh--hH
Q 010837 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG-KIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNP--NQ 333 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~--~~ 333 (499)
...+..+.|+.....+++..+. +..+|+.-..++.+.| ++++++..++++.+ .+..+|+.....+.+.|+. ++
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 3335666777777766664432 2234444444445555 45677777766654 2444555554444455542 55
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhc---CCH----HHH
Q 010837 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRA---GSL----EQA 405 (499)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~----~~a 405 (499)
++.+++++.+.. +-|..+|+...-++...|+++++++.++++.+. .| +...|+.....+.+. |+. +++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 666666666543 335556666666666667777777777777632 23 444454444443333 222 344
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHhhc----CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 406 LKFVLEMPE--KPNSDVWAALLSSCRLH----DDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 406 ~~~~~~~~~--~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
++...++.. +.|...|+.+...+... +...+|.+++.+..+.++.. +.....|+..|..
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s-~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH-VFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc-HHHHHHHHHHHHh
Confidence 555434333 23445666665555542 23345666666666655554 5566666666664
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00015 Score=66.55 Aligned_cols=136 Identities=15% Similarity=0.073 Sum_probs=71.8
Q ss_pred HHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHcccCcHHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN-YVTFLGALSACGHAGLVDKG 369 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a 369 (499)
+...|.+++|+..++.+.+ | |+..+....+.+...|+..+|.+.++++... .|+ ......+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3445555666665555542 2 4444455555566666666666666665553 333 33334445555666666666
Q ss_pred HHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 370 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
+.+++.... ..+-|...|..|..+|...|+..++..-.. .++...|+++.|...+....+..
T Consensus 394 i~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A---------------E~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 394 IRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA---------------EGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH---------------HHHHhCCCHHHHHHHHHHHHHhc
Confidence 666655552 222255556666666666665555544332 23445566666666555555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00022 Score=70.88 Aligned_cols=178 Identities=10% Similarity=-0.030 Sum_probs=123.5
Q ss_pred ChhHHHHHhccCCCCCh---HHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHH
Q 010837 95 ALKYAGQMFDELPQRTL---SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171 (499)
Q Consensus 95 ~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~ 171 (499)
+...|...|-+..+.|+ ..|..|...|...-+...|.+.|+...+.+ ..|..........+ ....+++.|.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adty-----ae~~~we~a~ 546 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTY-----AEESTWEEAF 546 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHh-----hccccHHHHH
Confidence 36666666665554443 478999999988889999999999988753 34555667777777 8888889888
Q ss_pred HHHHHHHHcCC-CCchhHHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--C
Q 010837 172 MVHAQILKCDV-KADDVLYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--E 245 (499)
Q Consensus 172 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~ 245 (499)
.+.-...+... ..-..-|-.+.-.|...++...|+.-|+...+- |...|..+..+|...|++..|.++|.+.. +
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 88322222110 000111222444567888999999999888663 67789999999999999999999997765 5
Q ss_pred CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHc
Q 010837 246 KDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278 (499)
Q Consensus 246 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 278 (499)
|+..--........+..|.+.++...+..+...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 554433334444444558888888888776653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=73.66 Aligned_cols=123 Identities=11% Similarity=0.099 Sum_probs=91.0
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHh
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCR 429 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~ 429 (499)
....++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++... +.+...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445566666677788888888887733 354 344567777777777788888777665 235566666667778
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 430 LHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+.++++.|+.+.+++.+..|.. ..+|..|+.+|.+.|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888888887 8888888888888888888888887765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.4e-06 Score=49.82 Aligned_cols=34 Identities=24% Similarity=0.525 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCC
Q 010837 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP 144 (499)
Q Consensus 111 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 144 (499)
+.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999987
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-06 Score=50.38 Aligned_cols=34 Identities=41% Similarity=0.732 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCh
Q 010837 113 AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146 (499)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 146 (499)
+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.3e-05 Score=61.70 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=50.0
Q ss_pred cCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCH----HHHHHHHHHHhhcCCHHH
Q 010837 363 AGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPEK-PNS----DVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~ 436 (499)
.++...+...++.+..+++-.+ .....-.+...+...|++++|...|+.+... |+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444555554555543322111 1122223334444555555555555554442 221 122334444555555555
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
|+..++........ +..+...+.+|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~~~~--~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEAFK--ALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcchH--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555442222221 23444555555555555555555543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.7e-05 Score=71.07 Aligned_cols=125 Identities=13% Similarity=0.099 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 365 (499)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+. .+-+......-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 33456677778899999999999999888777788889998899999999999998865 24456666666677889999
Q ss_pred HHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 366 VDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
.+.|..+.+++. ...| +..+|..|..+|...|+++.|+..++.+.-
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999998 5577 566999999999999999999999988874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.1e-06 Score=48.14 Aligned_cols=33 Identities=42% Similarity=0.689 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 349 (499)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.1e-05 Score=59.12 Aligned_cols=101 Identities=22% Similarity=0.272 Sum_probs=71.2
Q ss_pred CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHH
Q 010837 382 MKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458 (499)
Q Consensus 382 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 458 (499)
..| +......+...+...|++++|.+.|+.+.. +.+...+..+...+...|++++|...+++.++.++.. ...+..
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~ 90 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD-PRPYFH 90 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-hHHHHH
Confidence 344 344455666667777777777777777655 3455667777777777777777777777777777665 677777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 459 LSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
++.+|...|++++|.+.+++..+.+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 7777777777777777777776643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0002 Score=57.21 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC--hhHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY---VTFLGALSACGHAGLVDKGREIFESMERDYSMKPK--MEHYAC 391 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 391 (499)
.|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+.+... ...|. ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344445554 4778888888888887753 2231 22334456677888888888888888843 32222 223445
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPEK-PNSDVWAALLSSCRLHDDVEMANIAANEI 444 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (499)
|...+...|++++|+..++..... .....+......+...|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677788888888888888776552 34456667777888888888888888765
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00068 Score=57.37 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=115.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh-
Q 010837 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR- 398 (499)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 398 (499)
.-...|+..|++++|++...... . ......=+..+.+..+++-|.+.++.|. .+ -+..+.+.|..++.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~----~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq---~i-ded~tLtQLA~awv~l 182 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE----N--LEAAALNVQILLKMHRFDLAEKELKKMQ---QI-DEDATLTQLAQAWVKL 182 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc----h--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---cc-chHHHHHHHHHHHHHH
Confidence 33467889999999999887622 2 2222223344567789999999999998 22 244566667666654
Q ss_pred ---cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHH
Q 010837 399 ---AGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473 (499)
Q Consensus 399 ---~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (499)
.+.+.+|.-+|+++.+ .|+..+.+....++...|++++|..+++.++...... +.+...++.+-.-.|...++.
T Consensus 183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d-petL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD-PETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhCCChHHH
Confidence 5679999999999998 5899999999999999999999999999999999888 888888888888888776654
Q ss_pred -HHHHHHHh
Q 010837 474 -ELREKMKL 481 (499)
Q Consensus 474 -~~~~~~~~ 481 (499)
+.+.++..
T Consensus 262 ~r~l~QLk~ 270 (299)
T KOG3081|consen 262 ERNLSQLKL 270 (299)
T ss_pred HHHHHHHHh
Confidence 45555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.7e-06 Score=47.18 Aligned_cols=33 Identities=36% Similarity=0.673 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 348 (499)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888777776
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.8e-05 Score=58.79 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
....-.+...+...|++++|.++|+-... +-+..-|..|..+|...|++++|+..+..+...+++. +..+..++.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chHHHHHHHHH
Confidence 33444556667788889988888887655 4566778888888888889999999999888888866 88888899999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 010837 464 AAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~ 482 (499)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999998888876654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00066 Score=69.07 Aligned_cols=237 Identities=16% Similarity=0.133 Sum_probs=132.3
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 121 (499)
|.+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++.+++..+ .++...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~ 93 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSF 93 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhc
Confidence 5667777788888878888888888888655553 22233333333456666665554443 233333
Q ss_pred HhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCC
Q 010837 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201 (499)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (499)
....++..+.-+...|... .-+...+-.+..+| ...+..+.+..+++++++.. +-|+.+.|.+...|... +
T Consensus 94 ~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Y-----dk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLY--GENKLALRTLAEAY-----AKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 3333443333333333332 11222444444455 56666666666666666655 55566667777777766 7
Q ss_pred hhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHc-cc
Q 010837 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN-VF 280 (499)
Q Consensus 202 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~ 280 (499)
+++|++++.+... .+...+++.++.+++.++..-++.-+.. -..+.+.+... |.
T Consensus 165 L~KA~~m~~KAV~-----------~~i~~kq~~~~~e~W~k~~~~~~~d~d~--------------f~~i~~ki~~~~~~ 219 (906)
T PRK14720 165 KEKAITYLKKAIY-----------RFIKKKQYVGIEEIWSKLVHYNSDDFDF--------------FLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHHHHHH-----------HHHhhhcchHHHHHHHHHHhcCcccchH--------------HHHHHHHHHhhhcc
Confidence 7777766655433 2555566677777776666433322211 11222222221 22
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 010837 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYG 326 (499)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 326 (499)
.--..++-.+-..|...++++++..+++.+.+ .|.....-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22334555566778888889999999988875 35556666666665
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.01 E-value=7e-05 Score=54.70 Aligned_cols=93 Identities=20% Similarity=0.228 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
+..+...+...|++++|...++++.. +.+...+..+...+...|++++|.+.++...+..+.. ..++..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHHH
Confidence 45566677778888888888877665 2334567777777788888888888888888877766 56778888888888
Q ss_pred CChHHHHHHHHHHHhC
Q 010837 467 GKWDSVTELREKMKLR 482 (499)
Q Consensus 467 g~~~~A~~~~~~~~~~ 482 (499)
|++++|...++...+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 8888888888776653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0019 Score=54.40 Aligned_cols=186 Identities=13% Similarity=0.123 Sum_probs=122.6
Q ss_pred hhHHHHHHHHHHHHHc---c-cCCCch-hHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHH---HHHHHHHhCCChhHH
Q 010837 263 ETARKALEVHCQLIKN---V-FFEDVK-LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT---SMIDGYGKNGNPNQA 334 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a 334 (499)
...++..+++.++... | ..++.. .|..++-+....|+.+.|..+++++.+.-+.++. .-..-+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 3445556655555432 2 333433 4455666667788888888888887652221111 112223456888999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 335 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
+++|+.+.+.+ +.|..++..=+...-..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.-.++++.-
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999988875 55666666555555566776788877777774 3455888888899999999999999888888765
Q ss_pred -CC-CHHHHHHHHHHHhhcC---CHHHHHHHHHHHHhcCCCC
Q 010837 415 -KP-NSDVWAALLSSCRLHD---DVEMANIAANEIFKLNAND 451 (499)
Q Consensus 415 -~~-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~ 451 (499)
.| +...+..+...+.-.| +...+.+.+.+.++..+..
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 34 4455556666554333 6677888888888887754
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0013 Score=55.32 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=134.5
Q ss_pred CChHHHHHHHHhcCC--------CCh-hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHH
Q 010837 298 GKIDDARRVFDHMQQ--------KNV-FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368 (499)
Q Consensus 298 g~~~~a~~~~~~~~~--------~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 368 (499)
.+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++... ++-+...-..-..-+...|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 455666666665542 233 24556666777889999999999999876 32232222222222455689999
Q ss_pred HHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010837 369 GREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIF 445 (499)
Q Consensus 369 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (499)
|+++|+.+.++ .| |..+|-.-+-..-..|+.-+|++-+.+..+ -.|...|.-+...|...|++++|.-.+++++
T Consensus 105 A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999954 35 677777666666777887788887776665 3689999999999999999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHhcC---ChHHHHHHHHHHHhCCC
Q 010837 446 KLNANDRPGAYVALSNTLAAAG---KWDSVTELREKMKLRGV 484 (499)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 484 (499)
-..|.. +..+..+...+.-.| +++-|.+.+.+..+.+.
T Consensus 182 l~~P~n-~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQPFN-PLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999887 788888888776555 56678888888777554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.7e-06 Score=58.31 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=22.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHH
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
+..++.+.|++++|.+++++ .+.++.+ ......++.+|.+.|++++|+++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 44444444444444444444 3233322 2333344444455555555554444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00021 Score=54.85 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=23.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNAND--RPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+..++.+.|+++.|...++.+....|.. ...++..++.++.+.|++++|.+.++++.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 3444444444444444444444433321 122333444444444444444444444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0002 Score=55.04 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHH
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN----SDVWAAL 424 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----~~~~~~l 424 (499)
.++..+...+...|++++|.+.|..+.+...-.+ ....+..+..++.+.|++++|.+.|+.+.. .|+ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566777788899999999999999985432212 234667789999999999999999998876 333 4678888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..++...|+.++|...++++++..|..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 889999999999999999999998876
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.4e-05 Score=44.33 Aligned_cols=31 Identities=39% Similarity=0.651 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHcCC
Q 010837 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGE 142 (499)
Q Consensus 112 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 142 (499)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3789999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.8e-05 Score=68.61 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=83.4
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD 433 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 433 (499)
...+...|++++|...|+++.+ ..| +...|..+..+|.+.|++++|+..++++.. +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 4456677999999999999983 355 677888889999999999999999999876 3467788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 434 VEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
+++|+..|+++++.++.. ......+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~-~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGD-SRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 999999999999998877 5544444333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00021 Score=51.86 Aligned_cols=85 Identities=19% Similarity=0.149 Sum_probs=66.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHcCC-CCChhhHHHHhhhcccccc---CCcCcchhHHHHHHHHHHcCCCCchhHH
Q 010837 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRS---NVPLPRNLGRMVHAQILKCDVKADDVLY 189 (499)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (499)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+... ......-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 9999999999998753221 1112344566788999999999999999
Q ss_pred HHHHHHHHh
Q 010837 190 TALVDSYVK 198 (499)
Q Consensus 190 ~~l~~~~~~ 198 (499)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00017 Score=62.12 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=65.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC
Q 010837 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS 401 (499)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 401 (499)
.-+.+.+++++|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++--+..+ .+.| ....|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 34566677777777777777741 3355556666677777777777777766666 4455 45577777777777777
Q ss_pred HHHHHHHHHhCCC-CCCHHHHHH
Q 010837 402 LEQALKFVLEMPE-KPNSDVWAA 423 (499)
Q Consensus 402 ~~~a~~~~~~~~~-~~~~~~~~~ 423 (499)
+++|++.|++..+ .|+-.+|-.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHH
Confidence 7777777777776 565555543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.5e-05 Score=42.73 Aligned_cols=29 Identities=45% Similarity=0.631 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECC 345 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (499)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.03 Score=50.91 Aligned_cols=123 Identities=11% Similarity=0.168 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 365 (499)
+.+..+.-+...|+...|.++-.+..=|+-..|...+.+++..++|++-.++-.. +-++..|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4455566677889999999998888888989999999999999999887765332 1234678888999999999
Q ss_pred HHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010837 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 428 (499)
..+|..+...+. +..-+..|.++|++.+|.+.-.+.. |...+..+...+
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 999988877633 2445778889999999887765544 344444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=51.92 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=34.2
Q ss_pred CChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHH
Q 010837 329 GNPNQALELFCMMQECCVQ-PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQAL 406 (499)
Q Consensus 329 g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 406 (499)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. . ...+ +......+..++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4555555555555543211 1222333345555555555555555554 2 1111 1222333345555555555555
Q ss_pred HHHH
Q 010837 407 KFVL 410 (499)
Q Consensus 407 ~~~~ 410 (499)
+.|+
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00038 Score=50.66 Aligned_cols=89 Identities=19% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhc
Q 010837 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399 (499)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 399 (499)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++..... .+.+...+..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHHH
Confidence 34444444555555555555544431 122233444444444445555555555444411 011223344444444444
Q ss_pred CCHHHHHHHHHh
Q 010837 400 GSLEQALKFVLE 411 (499)
Q Consensus 400 ~~~~~a~~~~~~ 411 (499)
|++++|...+.+
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 444444444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00015 Score=49.30 Aligned_cols=65 Identities=23% Similarity=0.231 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG-KWDSVTELREKMKLR 482 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 482 (499)
+..+|..+...+...|++++|+..|+++++.+|.. +..|..++.+|.+.| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46778888888999999999999999999998887 888999999999998 799999988887653
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00067 Score=58.91 Aligned_cols=108 Identities=12% Similarity=0.048 Sum_probs=68.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc---CCHHHHHHHHHHHHhcCCCCCCchhHHH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLH---DDVEMANIAANEIFKLNANDRPGAYVAL 459 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (499)
|...|-.|...|...|+.+.|..-|.+... .++...+..+..++..+ .+..++..+|++++..++.. ..+...|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~-iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPAN-IRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc-HHHHHHH
Confidence 566666677777777777777766666655 35555565555554332 23456666777777776666 6666667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCccCcccccc
Q 010837 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493 (499)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 493 (499)
...+...|++.+|...++.|.+..-..++..+-|
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 7777777777777777777766665555544443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0017 Score=51.08 Aligned_cols=105 Identities=9% Similarity=-0.026 Sum_probs=76.9
Q ss_pred HHHHHhcc-CCChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCC
Q 010837 206 RIVFDMML-EKNVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282 (499)
Q Consensus 206 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 282 (499)
+..+..+. +.+......+...+...|++++|.++|+... +|....|-.-+..+++..+++++|+..|.......+ -
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-d 101 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-D 101 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-C
Confidence 44555555 5566677777888889999999999998775 666666666667777777788888888887777664 4
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcC
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQ 311 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (499)
++..+-.+..++.+.|+.+.|.+.|+...
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666667777778888888877777543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00015 Score=48.62 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=42.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+...+...|++++|++.|+++++..|.. ...+..++.++.+.|++++|...++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDN-PEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677788888888888888777765 77777888888888888888888777765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00083 Score=62.50 Aligned_cols=101 Identities=10% Similarity=0.016 Sum_probs=82.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhc
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRA 399 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 399 (499)
....+...|++++|++.|++..+.. +.+...|..+..+|...|++++|...++++. .+.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHh
Confidence 3556778899999999999999863 4467788888899999999999999999998 3456 677888999999999
Q ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 010837 400 GSLEQALKFVLEMPE-KPNSDVWAALL 425 (499)
Q Consensus 400 ~~~~~a~~~~~~~~~-~~~~~~~~~l~ 425 (499)
|++++|+..|++... .|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999887 45544444433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.048 Score=49.56 Aligned_cols=107 Identities=8% Similarity=0.102 Sum_probs=82.4
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (499)
+.+.-+.-|...|+...|.++-.+. . -|+...|...+.+|+..++|++-.++... +-.+.-|...+.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4445566666778888888876555 3 48888899999999999999988876554 33458888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
|+..+|..+..+ ..+..-+..|.+.|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHH
Confidence 999999888776 22377788888999988887653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00079 Score=60.56 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=48.3
Q ss_pred HhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChH
Q 010837 397 GRAGSLEQALKFVLEMPE------KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 470 (499)
.+.|.+..|.+.|.+... +++...|.....+..+.|+.++|+.-.+++.+.++.- ...|..-+.++...++|+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy-ikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY-IKALLRRANCHLALEKWE 338 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544 2344445555555555566666665555555555554 455555555555555666
Q ss_pred HHHHHHHHHHhCCCccC
Q 010837 471 SVTELREKMKLRGVLKD 487 (499)
Q Consensus 471 ~A~~~~~~~~~~~~~~~ 487 (499)
+|.+-++...+..-.+.
T Consensus 339 ~AV~d~~~a~q~~~s~e 355 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKDCE 355 (486)
T ss_pred HHHHHHHHHHhhccccc
Confidence 66655555544433333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=54.85 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE-KPN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
.+..+...+...|++++|...|++... .|+ ...+..+...+.+.|++++|...++++++..+.. ...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHH
Confidence 344444445555555555555554442 111 2345555555555555555555555555555444 4445555555
Q ss_pred HHhcCC--------------hHHHHHHHHHHHh
Q 010837 463 LAAAGK--------------WDSVTELREKMKL 481 (499)
Q Consensus 463 ~~~~g~--------------~~~A~~~~~~~~~ 481 (499)
|...|+ +++|.+++++...
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 555444 4556666665544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0002 Score=61.67 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=95.5
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhcCCH
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP-NSDVWAALLSSCRLHDDV 434 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~ 434 (499)
.-+.+.+++++|+..|.+.+ .+.| |...|..=..+|.+.|.++.|++-.+.... .| ...+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 44667899999999999999 6677 677778888999999999999999988876 33 457999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChH---HHHHHHHHHHhCCCccCc
Q 010837 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD---SVTELREKMKLRGVLKDT 488 (499)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~ 488 (499)
++|++.|++.++.+|.. ......|-.+-.+.+... .+..-++.....|..|+.
T Consensus 166 ~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDN-ESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 99999999999999988 444444444444444443 334444444444444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00062 Score=60.99 Aligned_cols=132 Identities=12% Similarity=0.183 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA-CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 468888999889999999999999998643 2233444433333 334577888999999999654 346677888899
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 395 LLGRAGSLEQALKFVLEMPEK-PN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
.+.+.++.+.|..+|++.... +. ...|...+.--.+.|+.+.+..+.+++.+.-+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999998873 33 348999998889999999999999999887655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0026 Score=57.00 Aligned_cols=140 Identities=15% Similarity=0.184 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCCCC---hhHHHHHHHH-HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKN---VFTWTSMIDG-YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 360 (499)
.+|..+|....+.+..+.|..+|.++.+.. ...|-..... +...++.+.|.++|+...+. +..+...+...++-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 367788888888889999999999987643 2333333333 22356777799999998876 566777788888888
Q ss_pred cccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALL 425 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~ 425 (499)
.+.|+.+.|..+|++......-.. ...+|...++.=.+.|+.+.+.++.+++.+ -|+......++
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 899999999999999984322122 235888888888889999999999887776 24433333333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.001 Score=54.88 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=54.2
Q ss_pred CCChhhHHHHHHHHHHcCCCCChhhHHHHhhhcccccc-----------CCcCcchhHHHHHHHHHHcCCCCchhHHHHH
Q 010837 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS-----------NVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192 (499)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (499)
.|.++=....++.|.+-|+.-|..+|+.||..+=+..- ....+.+.+..++++|...|+.||..++..|
T Consensus 65 RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~l 144 (228)
T PF06239_consen 65 RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQML 144 (228)
T ss_pred cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35555555666666666666677777776666521110 1223345688899999999999999999999
Q ss_pred HHHHHhCCC
Q 010837 193 VDSYVKGGK 201 (499)
Q Consensus 193 ~~~~~~~g~ 201 (499)
++.+++.+.
T Consensus 145 l~iFG~~s~ 153 (228)
T PF06239_consen 145 LNIFGRKSH 153 (228)
T ss_pred HHHhccccH
Confidence 999987665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.004 Score=60.66 Aligned_cols=137 Identities=12% Similarity=0.025 Sum_probs=79.4
Q ss_pred CChhHHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHccc--------CcHHHHHHHHHHchH
Q 010837 313 KNVFTWTSMIDGYGKN-----GNPNQALELFCMMQECCVQPNY-VTFLGALSACGHA--------GLVDKGREIFESMER 378 (499)
Q Consensus 313 ~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 378 (499)
.+...|...+.+.... ++.+.|..+|++..+. .|+. ..+..+..++... .++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3566666666654332 2255777777777763 4543 3333332222111 123333443333321
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 379 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
......+...|..+.......|++++|...++++.. .|+...|..+...+...|+.++|.+.++++...+|..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 111222445666666666666777777777777766 5677777777777777777777777777777777765
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0037 Score=51.63 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=78.0
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN--YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYA 390 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~ 390 (499)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+ ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344566667777777888888888877765432222 34566667777777777777777777762 234 445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
.+..+|...|+...+..-++... ..+++|.++++++.+.+|.. |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN----YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh----HHHHHHHHHhcCc
Confidence 66666666666554443322211 12566777777777666543 5555555554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0012 Score=54.24 Aligned_cols=92 Identities=12% Similarity=-0.049 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE-KP----NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 460 (499)
...|..+...+...|++++|+..|++... .| ...++..+...+...|++++|+..++++.+..+.. ...+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-PQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Confidence 44566667777777888888888877753 12 23467778888888888888888888888776665 56666667
Q ss_pred HHHH-------hcCChHHHHHHHHH
Q 010837 461 NTLA-------AAGKWDSVTELREK 478 (499)
Q Consensus 461 ~~~~-------~~g~~~~A~~~~~~ 478 (499)
.++. +.|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 6666 77787766555544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.023 Score=45.65 Aligned_cols=125 Identities=10% Similarity=0.067 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---CHHH
Q 010837 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK-PKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP---NSDV 420 (499)
Q Consensus 346 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~---~~~~ 420 (499)
..|+...-..|..+....|+..+|...|++.. . |+- -|....-.+.++....++...|...+++..+ +| +..+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-s-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-S-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-c-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 45666666677788888888888888888877 3 443 3777777788888888888888888887766 22 2334
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHH
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
...+.+.+...|.+..|+..|+.++..-|.+ ..-......+.++|+.++|..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~--~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP--QARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH--HHHHHHHHHHHHhcchhHHHH
Confidence 4556677888888888888888888877766 444455666778887766654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00091 Score=62.38 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=97.6
Q ss_pred CCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC-C-----ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhh
Q 010837 75 GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ-R-----TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148 (499)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 148 (499)
+.+.+......++..+....+++.+..++-+... | -..+..++++.|.+.|..+.++++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4456667777788888888888888888877663 2 233556899999999999999999999889999999999
Q ss_pred HHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhC
Q 010837 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199 (499)
Q Consensus 149 ~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (499)
+|.+|..+ ...+++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~f-----l~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHF-----LKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHH-----hhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999 88889999999988888888777777877777777666
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0022 Score=52.80 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQP--NYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
.|..+...+...|++++|...|++.......+ ...++..+..++...|+.++|...++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555555555555555554331111 11244444445555555555555555544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.034 Score=50.12 Aligned_cols=198 Identities=14% Similarity=0.168 Sum_probs=106.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccC-----CC----hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHh
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLE-----KN----VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~ 259 (499)
|......|-..|++++|.+.|.+... .+ ...|......|.+. ++++|.+.+++. +..+.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A-----------~~~y~ 105 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA-----------IEIYR 105 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH-----------HHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH-----------HHHHH
Confidence 44456677778888888877766522 01 11233333333332 555555554432 12222
Q ss_pred cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhc-CChHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhCC
Q 010837 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC-GKIDDARRVFDHMQQ-----K----NVFTWTSMIDGYGKNG 329 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~g 329 (499)
.. |.++.+-. .+..+...|... |++++|.+.|++..+ . -...+..+...+.+.|
T Consensus 106 ~~-G~~~~aA~---------------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 106 EA-GRFSQAAK---------------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HC-T-HHHHHH---------------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred hc-CcHHHHHH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 22 33323222 333455556666 778888877777653 1 1234556777788888
Q ss_pred ChhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHcccCcHHHHHHHHHHchHh-cCCCCC--hhHHHHHHHHHHh--
Q 010837 330 NPNQALELFCMMQECCVQ-----PNYV-TFLGALSACGHAGLVDKGREIFESMERD-YSMKPK--MEHYACMVDLLGR-- 398 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~p~--~~~~~~l~~~~~~-- 398 (499)
++++|.++|++....... .+.. .|...+-++...|+...|.+.+++.... .++..+ ......|+.++-.
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD 249 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 999999999887664322 1221 2333344566678888888888887622 122222 3355666776643
Q ss_pred cCCHHHHHHHHHhCCC
Q 010837 399 AGSLEQALKFVLEMPE 414 (499)
Q Consensus 399 ~~~~~~a~~~~~~~~~ 414 (499)
...++.++.-|+.+..
T Consensus 250 ~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 250 VEAFTEAVAEYDSISR 265 (282)
T ss_dssp CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHcccCc
Confidence 3567777777777764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0013 Score=59.07 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=88.2
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHH---chHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCCHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFES---MERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--------KPNSD 419 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~ 419 (499)
.|..|...|.-.|+++.|+...+. +.+++|-.. ....+..|..++.-.|+++.|.+.|+.... .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666677888888765543 222344333 345677788888888888888888776433 13345
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhc----C-CCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKL----N-ANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+..+|..+|.-..++++|+..+++-+.. + ..-....++.|..++...|..+.|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6667788888888888888887765431 1 111256888999999999998888877765543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0046 Score=60.25 Aligned_cols=137 Identities=12% Similarity=-0.014 Sum_probs=100.2
Q ss_pred CCCCCHHHHHHHHHHHcc-----cCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHH
Q 010837 345 CVQPNYVTFLGALSACGH-----AGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRA--------GSLEQALKFVL 410 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------~~~~~a~~~~~ 410 (499)
+.+.|...|..++.+... .++.+.|..+|++.. ...|+ ...|..+..++... +++..+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 356778888888887543 234779999999998 45784 44555554444322 22345555555
Q ss_pred hCCC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 010837 411 EMPE----KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486 (499)
Q Consensus 411 ~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 486 (499)
+... ..+...|..+.-.+...|++++|...++++++.++. ...|..++.+|...|+.++|.+.+++....+...
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 5332 345577887777777789999999999999999973 6899999999999999999999999987755443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00099 Score=62.15 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=102.0
Q ss_pred CCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHh--CCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC----CChHH
Q 010837 40 SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKT--GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ----RTLSA 113 (499)
Q Consensus 40 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~ 113 (499)
..+-++-.+..++..+....+++.+..++...... ....-..+..++++.|.+.|..++++.+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556677888899999999999999998888765 3334455667999999999999999999987554 89999
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhcccc
Q 010837 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCC 159 (499)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 159 (499)
+|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999988888888998888888544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0024 Score=46.53 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=60.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHcccC--------cHHHHHHHHHHchHhcCCCCChhHH
Q 010837 319 TSMIDGYGKNGNPNQALELFCMMQECCV-QPNYVTFLGALSACGHAG--------LVDKGREIFESMERDYSMKPKMEHY 389 (499)
Q Consensus 319 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~p~~~~~ 389 (499)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. ++-+...+|+.|. ..+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHHH
Confidence 3455566667888899999999999888 889999998888766542 3445677888888 55888888888
Q ss_pred HHHHHHHHh
Q 010837 390 ACMVDLLGR 398 (499)
Q Consensus 390 ~~l~~~~~~ 398 (499)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0031 Score=52.17 Aligned_cols=97 Identities=18% Similarity=0.309 Sum_probs=76.9
Q ss_pred HHHHHhc--CCCChhHHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc-------------
Q 010837 304 RRVFDHM--QQKNVFTWTSMIDGYGK-----NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA------------- 363 (499)
Q Consensus 304 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 363 (499)
...|+.. ...+-.+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556655 45677888888888875 467777888899999999999999999999987653
Q ss_pred ---CcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCC
Q 010837 364 ---GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401 (499)
Q Consensus 364 ---~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 401 (499)
.+-+-|+++++.|. .+|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 23467888999998 77999999999999998876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00024 Score=48.19 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=40.9
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
...|++++|++.|+++.+..|.. ..++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678888888888888888776 7777788888888888888888887776543
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0064 Score=54.74 Aligned_cols=186 Identities=16% Similarity=0.210 Sum_probs=108.9
Q ss_pred HHHHHhcCChHHHHHHHHhcCC-------C--ChhHHHHHHHHHHhCCChhHHHHHHHHHHH----cCCCCCH--HHHHH
Q 010837 291 VDMYAKCGKIDDARRVFDHMQQ-------K--NVFTWTSMIDGYGKNGNPNQALELFCMMQE----CCVQPNY--VTFLG 355 (499)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~~--~~~~~ 355 (499)
...|...|++++|.+.|.+..+ + -...|......|.+. ++++|.+.+++..+ .| .|+. ..+..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~ 119 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence 3446666677766666665432 1 112344444444443 77777777776543 22 2322 35667
Q ss_pred HHHHHccc-CcHHHHHHHHHHchHhcCC--CC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--------CCHH-HH
Q 010837 356 ALSACGHA-GLVDKGREIFESMERDYSM--KP--KMEHYACMVDLLGRAGSLEQALKFVLEMPEK--------PNSD-VW 421 (499)
Q Consensus 356 ll~~~~~~-~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~-~~ 421 (499)
+...|... |++++|.+.|++...-+.. .+ -..++..+...+.+.|++++|.++|+++... .+.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 77788888 8999999999887743221 12 1345677788899999999999999876431 1221 33
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc-hhH---HHHHHHHhcCChHHHHHHHHHH
Q 010837 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPG-AYV---ALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~---~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
...+-++...||...|.+.+++.....|..... -+. .|+.++ +.|+.+.....+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 344446677899999999999998877665222 122 233332 556666666665554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0032 Score=49.82 Aligned_cols=87 Identities=18% Similarity=0.062 Sum_probs=56.6
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHH
Q 010837 394 DLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (499)
.-+...|++++|..+|+-+.- .-+..-|..|..++-..+++++|+..+..+...++.. +..+...+.+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCccchHHHHHHHhCCHHH
Confidence 334566777777777665433 3455556666666666677777777777766666544 6666777777777777777
Q ss_pred HHHHHHHHHh
Q 010837 472 VTELREKMKL 481 (499)
Q Consensus 472 A~~~~~~~~~ 481 (499)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777766655
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00047 Score=46.86 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhcCC
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHD-DVEMANIAANEIFKLNA 449 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~ 449 (499)
..+|..+...+...|++++|+..|++..+ +.+...|..+..++...| ++++|++.+++.++.+|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566677777777777777777777665 334566777777777777 57777777777776654
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00066 Score=45.45 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=40.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPE-KP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
+...+...|++++|++.|+++.. .| +...+..+..++...|++++|...++++++..|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34556677777777777777766 23 4556777777777777777777777777776664
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0081 Score=45.54 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=58.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHH
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPN--YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLG 397 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 397 (499)
+..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667888888888888877765544 23455666777778888888888877774422111 2222333445666
Q ss_pred hcCCHHHHHHHHHhCC
Q 010837 398 RAGSLEQALKFVLEMP 413 (499)
Q Consensus 398 ~~~~~~~a~~~~~~~~ 413 (499)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7788887777765544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=45.65 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=47.7
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 010837 426 SSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484 (499)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 484 (499)
..|.+.+++++|.++++++++.+|.. +..+...+.++.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 46778888888888888888888886 88888888888888888888888888876543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.039 Score=48.24 Aligned_cols=54 Identities=9% Similarity=0.101 Sum_probs=41.4
Q ss_pred HHHHHHHhCCChhHHHHHHHhccCC--C-hH---hHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 191 ALVDSYVKGGKTSYARIVFDMMLEK--N-VI---CSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~---~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
.....+...|++++|.+.|+.+... + .. ..-.++.++.+.+++++|...+++..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445567789999999999999663 2 22 23456778899999999999999887
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.024 Score=48.22 Aligned_cols=165 Identities=8% Similarity=-0.014 Sum_probs=116.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC----------CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010837 287 GSALVDMYAKCGKIDDARRVFDHMQQ----------KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356 (499)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 356 (499)
++.|.+.+.-..-+++-...++.-.. .-....+.++..+.-.|.+.-.+..+.+.++...+-++...+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 44555555544444444444443322 22335566777777788999999999999998767788888899
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhh
Q 010837 357 LSACGHAGLVDKGREIFESMERDYS----MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRL 430 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~ 430 (499)
...-.+.|+.+.|..+|++..+..+ ++-+..+.......|.-.+++..|...+.++.. +.++...|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 9999999999999999997774432 222222333333456677899999999998887 3455555555555556
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 010837 431 HDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.|+...|++.++.|.+..|.+
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHhccCCcc
Confidence 789999999999999988887
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.15 Score=47.17 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=49.7
Q ss_pred CHHHHHHHHHH--HhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 417 NSDVWAALLSS--CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 417 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+...-|.|.+| +...|++.++.-.-..+.+..| ++.+|..++-++....++++|..++..+.-
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP--S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP--SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 34456666665 5678999998877666666666 469999999999999999999999987643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.029 Score=48.98 Aligned_cols=58 Identities=3% Similarity=-0.020 Sum_probs=46.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFKLNAND--RPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
.+.+-|.+.|.+..|..-++.+++.-|.. .......++.+|.+.|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34556888999999999999999876654 24567788899999999999998877654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.28 Score=49.35 Aligned_cols=408 Identities=13% Similarity=0.120 Sum_probs=215.3
Q ss_pred hCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHH--HHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCChhhH
Q 010837 56 INSDTPFYGLKIHAHITKTGVKPNTNISIKLLIL--HLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQVEES 130 (499)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 130 (499)
...+++..|..-..++.+.. |+. .|...+.+ +.+.|+.++|..+++.... .|..+...+-.+|.+.|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 45678889998888888763 443 23333444 3688999999999987653 4777888999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCC---------
Q 010837 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK--------- 201 (499)
Q Consensus 131 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------- 201 (499)
..+|++..+. .|+..-...+..++ .+.+.+..-.++--++.+ .++-+...+=.++..+.....
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmay-----vR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAY-----VREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccch
Confidence 9999999875 67766666667777 555555554444444433 234455555556655544321
Q ss_pred -hhHHHHHHHhccCCC--hHh---HHHHHHHHHhCCCHHHHHHHHHhcC-----CCChhhHHHHHHHHhcChhhHHHHHH
Q 010837 202 -TSYARIVFDMMLEKN--VIC---STSMISGFMSQGFVEDAEEIFRKTV-----EKDIVVYNAMIEGYSISIETARKALE 270 (499)
Q Consensus 202 -~~~A~~~~~~~~~~~--~~~---~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~~a~~ 270 (499)
..-|.+.++.+.+.+ ..+ ...-...+-..|++++|++++..-. .-+...-+.-+.. .+..+.+.+..+
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dl-lk~l~~w~~l~~ 247 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDL-LKLLNRWQELFE 247 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHH-HHHhcChHHHHH
Confidence 223555566665443 111 1112334556788999999883322 1111111122222 223366667777
Q ss_pred HHHHHHHcccCCCchhHHHHHHHH----------------HhcCChHHHHHHHHhcCCC-ChhHHHHHHHHHH---hCCC
Q 010837 271 VHCQLIKNVFFEDVKLGSALVDMY----------------AKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYG---KNGN 330 (499)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~----------------~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~g~ 330 (499)
+-.++...|... |...++.+ ...+.++...+..++.... .-..|-+-+.+.. .-|+
T Consensus 248 l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd 323 (932)
T KOG2053|consen 248 LSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGD 323 (932)
T ss_pred HHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCC
Confidence 777777766432 32222221 1112233333332222211 1122333333333 3467
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChh-------HHHHHHHHHHhcCC--
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME-------HYACMVDLLGRAGS-- 401 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~~~-- 401 (499)
.+++...|-+- -|..|-. ..=+..|...=..+.-..++.... +..++.. -+...+..-.-.|.
T Consensus 324 ~ee~~~~y~~k--fg~kpcc---~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~ 395 (932)
T KOG2053|consen 324 SEEMLSYYFKK--FGDKPCC---AIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYE 395 (932)
T ss_pred hHHHHHHHHHH--hCCCcHh---HhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccc
Confidence 77765544332 1222211 111111111112222222222222 1111110 01111111111121
Q ss_pred ---HHHHHHHH-------HhCCC--C---CC---------HHHHHHHHHHHhhcCCHH---HHHHHHHHHHhcCCCCCCc
Q 010837 402 ---LEQALKFV-------LEMPE--K---PN---------SDVWAALLSSCRLHDDVE---MANIAANEIFKLNANDRPG 454 (499)
Q Consensus 402 ---~~~a~~~~-------~~~~~--~---~~---------~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~ 454 (499)
-+....++ +.-.+ + |+ ..+.+.|+..+.+.+|.. +|+-+++......+.+ ..
T Consensus 396 ~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hn-f~ 474 (932)
T KOG2053|consen 396 KLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHN-FQ 474 (932)
T ss_pred cCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCcc-HH
Confidence 11111111 11111 0 11 124567788888888755 5666677766676666 67
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCc
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDT 488 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 488 (499)
+-..++++|.-.|-+..|.++++.+--.++..|+
T Consensus 475 ~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 475 TKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 7778999999999999999999988877777765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0035 Score=55.20 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=48.5
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHH
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP----NSDVWAALLS 426 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~l~~ 426 (499)
|...+....+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+.+.. -| ....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444333445566666666666553321111 023444555555556666666665555543 12 1233444444
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.+...|+.++|..+++++++..|..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4555556666666665555555544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.056 Score=49.65 Aligned_cols=161 Identities=19% Similarity=0.110 Sum_probs=103.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCC-------ChhHHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQK-------NVFTWTSMIDGYGK---NGNPNQALELFCMMQECCVQPNYVTFLG 355 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 355 (499)
+...++-+|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+......++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3445566788899999999999988763 22333345556667 8999999999999766667888888888
Q ss_pred HHHHHc---------ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCH----HHHHHHH---HhCC-C----
Q 010837 356 ALSACG---------HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL----EQALKFV---LEMP-E---- 414 (499)
Q Consensus 356 ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~---~~~~-~---- 414 (499)
+...|- .....++|...|.+.- .+.|+...--.++-.+...|.- .+..++- .... .
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 776653 2234778888887665 4455433222222222233321 1222222 1111 1
Q ss_pred --CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 010837 415 --KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 415 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (499)
..+--.+..++.++.-.||.++|.+.+++|.+..+
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 24555677788888889999999999999988753
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0012 Score=44.72 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=23.7
Q ss_pred cCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 363 AGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
.|++++|.++|+.+... .| +..++..++.+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555422 23 444444455555555555555555555544
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.25 Score=45.68 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHH-HHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY-ACMVD 394 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~ 394 (499)
.|...+..-.+..-.+.|..+|.++.+.| +.++...+++++.-++ .|+...|.++|+.-...+ ||...| +..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHH
Confidence 56666777777777888888999888888 6677888888887665 478888888888777443 333333 45556
Q ss_pred HHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 395 LLGRAGSLEQALKFVLEMPEK----PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.+.+.++-+.|..+|+....+ .-...|..+|.--..-|+...+..+=+++.+.-|+-
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 667888888888888866552 224678888887778888877777777776655543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0094 Score=52.51 Aligned_cols=85 Identities=9% Similarity=0.014 Sum_probs=43.5
Q ss_pred HhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHhcCCh
Q 010837 397 GRAGSLEQALKFVLEMPE-KPNS----DVWAALLSSCRLHDDVEMANIAANEIFKLNAND--RPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 469 (499)
.+.|++++|+..|+.+.. .|+. ..+..+..+|...|++++|...|+.+.+..|.. .+..+..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444555555555555554 2322 344455555555555555555555555544432 123344445555555555
Q ss_pred HHHHHHHHHHHh
Q 010837 470 DSVTELREKMKL 481 (499)
Q Consensus 470 ~~A~~~~~~~~~ 481 (499)
++|.++++.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.29 Score=47.35 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=51.9
Q ss_pred HHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 373 (499)
+...|-.+.+.++-+++...+..+...+..-+.+...+..|-++|.+|-+. ..+++.+...+++.+|..+-
T Consensus 726 ~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalA 796 (1081)
T KOG1538|consen 726 CGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALA 796 (1081)
T ss_pred hhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhh
Confidence 444444455555555555555566666666666677778888888877542 34667778888888888877
Q ss_pred HHchHhcCCCCCh
Q 010837 374 ESMERDYSMKPKM 386 (499)
Q Consensus 374 ~~~~~~~~~~p~~ 386 (499)
++.- .+.|++
T Consensus 797 e~hP---e~~~dV 806 (1081)
T KOG1538|consen 797 EKHP---EFKDDV 806 (1081)
T ss_pred hhCc---cccccc
Confidence 6655 444543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.035 Score=48.56 Aligned_cols=103 Identities=13% Similarity=-0.036 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhCCC--CCCHHHH
Q 010837 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA---GSLEQALKFVLEMPE--KPNSDVW 421 (499)
Q Consensus 347 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~--~~~~~~~ 421 (499)
+-|...|..|..+|...|+.+.|..-|....+-.| ++...+..+..++... ....++.++|+++.. +.|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 55778888888889999999999888888873322 2566667777666543 245678888888876 3456667
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 422 AALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..|...+...|++.+|...|+.|.+..+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 777778888999999999999998887766
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.01 Score=44.94 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=54.7
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC---HH-HHHHHHHHH
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKPK--MEHYACMVDLLGRAGSLEQALKFVLEMPEK-PN---SD-VWAALLSSC 428 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~---~~-~~~~l~~~~ 428 (499)
+..++-..|+.++|+.+|++.. ..|+... ...+-.+...+...|++++|..+|++.... |+ .. ....+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3445666777788888887777 3355443 334555666677777777777777766652 43 21 222233355
Q ss_pred hhcCCHHHHHHHHHHHHh
Q 010837 429 RLHDDVEMANIAANEIFK 446 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~ 446 (499)
...|+.++|++.+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666777777777655443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.3 Score=44.32 Aligned_cols=209 Identities=14% Similarity=0.144 Sum_probs=96.9
Q ss_pred HhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC-----CCChh--hHHHHHHHHhc--Chhh
Q 010837 197 VKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV-----EKDIV--VYNAMIEGYSI--SIET 264 (499)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~--~~~~ll~~~~~--~~~~ 264 (499)
-+.|+.+.|..+-+..-.. -...+...+...+..|+++.|+++++.-. +++.. .-..++.+-.. ...+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4556666666666555332 23456666777777777777777775443 23321 12222222111 1112
Q ss_pred HHHHHHHHHHHHHcccCCCchh-HHHHHHHHHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 010837 265 ARKALEVHCQLIKNVFFEDVKL-GSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMM 341 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (499)
...|...-.+. ....|+..- -..-..++.+.|++.++-.+++.+-+ |.+..+. +..+.+.|+. +..-+++.
T Consensus 245 p~~Ar~~A~~a--~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gdt--a~dRlkRa 318 (531)
T COG3898 245 PASARDDALEA--NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGDT--ALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHH--hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCCc--HHHHHHHH
Confidence 22222222222 223344321 12234456666666666666666654 3333322 2223344432 22222222
Q ss_pred HHc-CCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHhCCC
Q 010837 342 QEC-CVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG-RAGSLEQALKFVLEMPE 414 (499)
Q Consensus 342 ~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 414 (499)
... .++| +..+...+..+-...|++..|..--+... ...|....|..|.+.-. ..|+-.++..++.+...
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 110 1233 23344445555556666666655544444 34565556655555433 33666666666665554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.52 Score=46.58 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=78.4
Q ss_pred CCCChhhHHHHHHHHH--------HhCCCCChHHHH-----HHHHHHHcCCChhHHHHHhccCCCCC---hHHHHHHHHH
Q 010837 57 NSDTPFYGLKIHAHIT--------KTGVKPNTNISI-----KLLILHLKCGALKYAGQMFDELPQRT---LSAYNYMIAG 120 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~ 120 (499)
+..++++-.++.+.+. ..|++.+..-|. .++.-+...+.+..|+++-+.+..|. ...|......
T Consensus 401 ~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~ 480 (829)
T KOG2280|consen 401 RTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARR 480 (829)
T ss_pred ccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHH
Confidence 4445555554444332 346666665554 35677777888888888887777654 4556666666
Q ss_pred HHhCCCh--hhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCC----CchhHHHHHHH
Q 010837 121 YLKNGQV--EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK----ADDVLYTALVD 194 (499)
Q Consensus 121 ~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~ 194 (499)
+.+..+. +++++..++=...-.. ...+|..+-+.. ...|..+.|..+.+.=...+.. .+..-+...+.
T Consensus 481 kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~A-----y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 481 KIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRA-----YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHH-----HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 6655332 2333333332222222 333454444443 5666677776665432111100 11122334444
Q ss_pred HHHhCCChhHHHHHHHhcc
Q 010837 195 SYVKGGKTSYARIVFDMML 213 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~ 213 (499)
-+...||.+-...++-.+.
T Consensus 555 kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHHhcCCchhHHHHHHHHH
Confidence 5556666666666555543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.051 Score=46.16 Aligned_cols=167 Identities=11% Similarity=0.052 Sum_probs=89.6
Q ss_pred HHHHHhcCChHHHHHHHHhcCC--C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc--
Q 010837 291 VDMYAKCGKIDDARRVFDHMQQ--K----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH-- 362 (499)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 362 (499)
...+...|++++|...|+.+.. | -....-.++.++.+.|+++.|...++++.+.-..-....+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3445667777777777777764 2 1234455667777778888888887777664211111122222222211
Q ss_pred -----------cCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 010837 363 -----------AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431 (499)
Q Consensus 363 -----------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (499)
.+...+|... +..++.-|-......+|...+..+...--. --..+..-|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~la~-~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNRLAE-HELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 1111222222 334444444444455555444444321111 112245678899
Q ss_pred CCHHHHHHHHHHHHhcCCCCC--CchhHHHHHHHHhcCChHHHHH
Q 010837 432 DDVEMANIAANEIFKLNANDR--PGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
|.+..|..-++.+++.-|... ......++.+|.+.|..+.|..
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999998877651 2356678888999998875543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.02 Score=43.93 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHH
Q 010837 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397 (499)
Q Consensus 346 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 397 (499)
..|+..+..+++.+|+..|++..|.++.+.+.+.++++.+..+|..|++-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678888889999999999999999999999888887778888888877543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.2 Score=40.48 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=43.6
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCCHHHHH
Q 010837 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECC---VQPNYVTFL 354 (499)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~ 354 (499)
|++..-..|..+....|+..+|...|++... .|....-.+.++....+++..|...++++.+.+ -+|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 3444344445555555555555555554432 244444444445555555555555555544432 1111 222
Q ss_pred HHHHHHcccCcHHHHHHHHHHch
Q 010837 355 GALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
.+..++...|+.+.|+.-|+...
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHH
Confidence 33444444555555555555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.65 Score=45.56 Aligned_cols=62 Identities=19% Similarity=0.121 Sum_probs=37.1
Q ss_pred CCChHHHHHHHHHHHcCCChhHHHHHhccCCC-CChHHH------------HHHHHHHHhCCChhhHHHHHHHHHHc
Q 010837 77 KPNTNISIKLLILHLKCGALKYAGQMFDELPQ-RTLSAY------------NYMIAGYLKNGQVEESLSLVRKLVSS 140 (499)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~ 140 (499)
.|.+..|..+...-...-.++.|+..|-+... +.+..- .+=+.+| -|++++|.++|-+|-++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh
Confidence 57778887777777777777777777765542 222211 1112222 46777777777666544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0066 Score=48.55 Aligned_cols=69 Identities=22% Similarity=0.203 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccCcc
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK-----LRGVLKDTG 489 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 489 (499)
+...++..+...|++++|.++++.++..+|-. ...|..++.+|.+.|+..+|.++|+++. +.|+.|++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 44556666777788888888888888887776 7778888888888888888887777653 346666654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0024 Score=44.54 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhc----CCCC--CCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKL----NAND--RPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
+++.+...|...|++++|+..++++++. +... ...++..++.+|...|++++|.+.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444445555554444444432 1110 1334555555555555555555555544
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.41 Score=43.84 Aligned_cols=88 Identities=11% Similarity=-0.021 Sum_probs=54.1
Q ss_pred HHHhCCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhc
Q 010837 324 GYGKNGNPNQALELFCMMQEC---CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRA 399 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 399 (499)
-..+.|++.+|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.--++.. .+.+. ...|-.-..++...
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHH
Confidence 345677788888888777653 234445556666666777788877777766665 33332 22333334445566
Q ss_pred CCHHHHHHHHHhCCC
Q 010837 400 GSLEQALKFVLEMPE 414 (499)
Q Consensus 400 ~~~~~a~~~~~~~~~ 414 (499)
++|++|.+-|+...+
T Consensus 335 e~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777776554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.02 Score=52.05 Aligned_cols=95 Identities=9% Similarity=0.047 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 010837 387 EHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464 (499)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (499)
.++..|..+|.+.+++.+|++.-.+... ++|....-.-..+|...|+++.|+..|+++++..|.+ ..+-..++.+-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence 4678889999999999999999998877 6788888888999999999999999999999999998 777778888777
Q ss_pred hcCChHHH-HHHHHHHHhC
Q 010837 465 AAGKWDSV-TELREKMKLR 482 (499)
Q Consensus 465 ~~g~~~~A-~~~~~~~~~~ 482 (499)
+..+..+. .++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 77666554 6788888654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0039 Score=43.51 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----C---CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE-----K---PN-SDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
..+|+.+...|...|++++|+..|++..+ . |+ ..++..+...+...|++++|++.+++..+.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45789999999999999999999988764 1 32 567888999999999999999999998763
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0073 Score=41.43 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=37.6
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 394 DLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..|.+.+++++|.++++.+.. +.+...+......+.+.|++++|.+.++...+.+|+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 445666777777777766665 3344555666666677777777777777777666654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.63 Score=42.41 Aligned_cols=286 Identities=16% Similarity=0.153 Sum_probs=177.1
Q ss_pred HHHHHHHHH--hCCChhHHHHHHHhcc---CCChHhHHHHH--HHHHhCCCHHHHHHHHHhcCC-CChhhHHHHHHHH--
Q 010837 189 YTALVDSYV--KGGKTSYARIVFDMML---EKNVICSTSMI--SGFMSQGFVEDAEEIFRKTVE-KDIVVYNAMIEGY-- 258 (499)
Q Consensus 189 ~~~l~~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~-- 258 (499)
|..|-.++. -.||-..|.++-.+-. ..|......++ ++-.-.|+++.|.+-|+.|.. |.. -..-+.++
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEt--RllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPET--RLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHH--HHHhHHHHHH
Confidence 444444443 3566666666655432 23444444443 334567899999999998873 332 22222222
Q ss_pred -hcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----CChh--HHHHHHHHHHh---
Q 010837 259 -SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----KNVF--TWTSMIDGYGK--- 327 (499)
Q Consensus 259 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~~--- 327 (499)
.+..|..+.|..+-+..-..-.. -.......+...+..|+++.|+++++.-.. +++. .-..|+.+-..
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 23447777777777666554322 245677888999999999999999987653 3332 22223332221
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHH-
Q 010837 328 NGNPNQALELFCMMQECCVQPNYV-TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA- 405 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a- 405 (499)
..+...|...-.+..+ +.||.. .-.....++.+.|++.++-.+++.+- + ..|.+.++...+ +.+.|+....
T Consensus 242 dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW-K--~ePHP~ia~lY~--~ar~gdta~dR 314 (531)
T COG3898 242 DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW-K--AEPHPDIALLYV--RARSGDTALDR 314 (531)
T ss_pred cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH-h--cCCChHHHHHHH--HhcCCCcHHHH
Confidence 2345555555544444 566654 23344567889999999999999998 3 355555443333 3455553221
Q ss_pred -H--HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc-CChHHHHHHHHHHHh
Q 010837 406 -L--KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA-GKWDSVTELREKMKL 481 (499)
Q Consensus 406 -~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 481 (499)
. +-+..|+ +.+..+...+..+....|++..|..--+......|.- ..|..|...-... |+-.++...+-+-.+
T Consensus 315 lkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre--s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 315 LKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE--SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh--hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1 1223333 3566778888889999999999988888777766654 7788888876654 999999998887776
Q ss_pred CCCccC
Q 010837 482 RGVLKD 487 (499)
Q Consensus 482 ~~~~~~ 487 (499)
.--.|+
T Consensus 392 APrdPa 397 (531)
T COG3898 392 APRDPA 397 (531)
T ss_pred CCCCCc
Confidence 554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.016 Score=53.90 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=69.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNS----DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (499)
+...++.+..+|...|++++|+..|++..+ .|+. .+|..+..+|...|+.++|++.++++++.+ + ..|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n--~~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--N--LKFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--c--hhHHHH
Confidence 567888899999999999999999988776 5664 358889999999999999999999998863 1 123221
Q ss_pred HH--HHHhcCChHHHHHHHHHHHhCCCc
Q 010837 460 SN--TLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 460 ~~--~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
.. .+....+..+..++++...+-|..
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 11 112233445777788877777753
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=1.3 Score=44.98 Aligned_cols=261 Identities=9% Similarity=0.001 Sum_probs=119.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHhcChhhHH
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETAR 266 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~ 266 (499)
...+..+.+.+++....+++..- ..+.........+....|+.++|.+..+.+- ......++.++..+
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~-------- 173 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVW-------- 173 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHH--------
Confidence 34455566778888877744332 3455556667777888888877766665543 22233444444444
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 010837 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (499)
.+.|.-.+..++.- +......|+...|..+...+..........++..+. +...+..++.. +
T Consensus 174 ---------~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~-----~ 235 (644)
T PRK11619 174 ---------QQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFART-----T 235 (644)
T ss_pred ---------HHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhc-----c
Confidence 33333222233322 333445566666666555552211112222222221 12222222111 1
Q ss_pred CCCHHH---HHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHH
Q 010837 347 QPNYVT---FLGALSACGHAGLVDKGREIFESMERDYSMKPK--MEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDV 420 (499)
Q Consensus 347 ~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~ 420 (499)
.|+... ....+.-+ ...+.+.|...+.......++.+. ..++..+.......+...+|...+..... ..+...
T Consensus 236 ~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~ 314 (644)
T PRK11619 236 GPTDFTRQMAAVAFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSL 314 (644)
T ss_pred CCChhhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHH
Confidence 122111 11111111 223446666666655433333332 12233333333332224455555555433 223344
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
...-+......++++.+...+..|...... ...-..-+++++.+.|+.++|...|+..
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444445666666666666655432222 2445555666666666666666666654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.42 E-value=1.1 Score=44.35 Aligned_cols=111 Identities=10% Similarity=0.131 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010837 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428 (499)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 428 (499)
..-+.+--+.-+...|+..+|.++-++.+ -||...|-.-+.++...++|++-+++-+..+. +.-|.-.+.+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHH
Confidence 33445555566677899999999877665 58888888889999999999998887776664 46677788999
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
.+.|+.++|...+-+. .-+...+.+|.+.|++.+|.+.-
T Consensus 755 ~~~~n~~EA~KYiprv---------~~l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV---------GGLQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhcc---------CChHHHHHHHHHhccHHHHHHHH
Confidence 9999999998887653 12227888899999998887654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.59 Score=45.41 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHH--------
Q 010837 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSD-------- 419 (499)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-------- 419 (499)
+..+...+..-+.+...+..|-++|..|- + ...+++.....++|++|..+-++..+ .|++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~g-D---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMG-D---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLA 815 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhc-c---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhh
Confidence 34455555555666777888888888875 1 24577888999999999999998887 34432
Q ss_pred ---HHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 420 ---VWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 420 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
-|.-.-.+|.+.|+..+|.++++++....
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 23334567889999999999999887643
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.041 Score=47.32 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=76.4
Q ss_pred HHHHhccCC--CCChHHHHHHHHHHHh-----CCChhhHHHHHHHHHHcCCCCChhhHHHHhhhcccccc----------
Q 010837 99 AGQMFDELP--QRTLSAYNYMIAGYLK-----NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS---------- 161 (499)
Q Consensus 99 A~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------- 161 (499)
.+..|+... ++|-.+|-..+..+.. .+.++=....++.|.+.|+.-|..+|+.||..+=+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344455544 4566666666665543 35566677778889999999999999999988722110
Q ss_pred -CCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCh-hHHHHHHHhc
Q 010837 162 -NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT-SYARIVFDMM 212 (499)
Q Consensus 162 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 212 (499)
.-...-+-+..++++|...|+.||..+-..|++++++.+-. .+..++.-.|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 01112234677899999999999999999999999887763 3344444444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.099 Score=46.26 Aligned_cols=149 Identities=8% Similarity=-0.056 Sum_probs=63.7
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhH----HHHHHHHHHhcCCHH
Q 010837 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLLGRAGSLE 403 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~~~~~ 403 (499)
+|+..+|...|+++.+. .+-|...+...=.+|...|+.+.-...++++..+ ..++... -..+.-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444555555554443 3334444444444455555554444444444421 1222211 122222333455555
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc---CCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 404 QALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL---NANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 404 ~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
+|.+.-++..+ +.|.-.-.++...+-..|+.+++.++..+-... +.-.-...|....-.+...+.++.|+++|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 55555555544 233334444444444455555555444332211 0000022344444445555555555555554
Q ss_pred H
Q 010837 479 M 479 (499)
Q Consensus 479 ~ 479 (499)
=
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.38 Score=44.37 Aligned_cols=166 Identities=12% Similarity=0.057 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHcc---cCcHHHHHHHHHHchHhcCCCCChhHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECC---VQPNYVTFLGALSACGH---AGLVDKGREIFESMERDYSMKPKMEHYA 390 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 390 (499)
+...++-+|....+++...++.+.|.... +.-....--...-|+.+ .|+.++|.+++..+... .-.++..+|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 33456667889999999999999998741 11112222233445566 89999999999995533 4456778888
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCC----HHHHHHHH---HH-HHhcC---C
Q 010837 391 CMVDLLGR---------AGSLEQALKFVLEMPE-KPNSDVWAALLSSCRLHDD----VEMANIAA---NE-IFKLN---A 449 (499)
Q Consensus 391 ~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~----~~~a~~~~---~~-~~~~~---~ 449 (499)
.+...|-. ....++|+..|.+.-+ +|+..+--.++..+...|. -.+..++- .. +.+.| .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88877632 2347889999988766 4544322222222222232 12222222 11 11233 3
Q ss_pred CCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
..+...+.+++.++.-.|++++|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 3335566688889999999999999999998753
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.083 Score=42.13 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchH----hcCCCCChhH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER----DYSMKPKMEH 388 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 388 (499)
....++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+...|.++|+.+.+ +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 45556667778888888888888888763 55777888888888888888888888877642 4577786654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.17 Score=38.30 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=81.0
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 405 (499)
.-.|..++..++..+.... .+..-++-++.-....-+-+-..++++.+-+-+.+.+- ...-.++.+|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc----
Confidence 3457777777777777653 34445555554444444555555666555433332221 011233444444333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
+.......+......|+-+.-.++++++.+.+ ++++.....+..+|.+.|+..++.+++.+..+.|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455566778888899998888888887643 334788899999999999999999999999998875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.076 Score=48.33 Aligned_cols=129 Identities=12% Similarity=0.002 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC---------CChhHHHHHHHHHHhCCChhHHHHHHHHHHH----cCC-CCCH
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQ---------KNVFTWTSMIDGYGKNGNPNQALELFCMMQE----CCV-QPNY 350 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~ 350 (499)
..|..|...|.-.|+++.|+..-+.-.. ..-..+..+..++.-.|+++.|.+.|+.-.. .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4556666667777888888765443221 1234566677788888888888888876432 221 2233
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchH---hc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMER---DY-SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
.+..+|..+|.-..++++|+.++.+-.. .. ...-....|.+|..+|...|..++|+.+.+...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455667777777788888877765431 11 111234567788888888888888887765543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.13 Score=44.01 Aligned_cols=134 Identities=10% Similarity=-0.001 Sum_probs=102.1
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHHH-----HH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVW-----AA 423 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~-----~~ 423 (499)
..+.++..+.-.|.+.-....+.+..++ .-+-++.....|++.-.+.|+.+.|...|++..+ +.+..+. ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3456677777788888889999999843 3334777888899999999999999999996654 2232333 33
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
....+.-++++..|...+.++...++.. +...+.-+-++.-.|+..+|.+.++.|......|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~-~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRN-AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCc-hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3345667789999999999999998887 77777777777778999999999999987654443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.2 Score=42.11 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=28.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQ-PNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
+..++.+.|+.++|.+.+++|.+.... .+......|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444444556666666666665543211 122244455555555666666665555543
|
The molecular function of this protein is uncertain. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.15 Score=40.63 Aligned_cols=91 Identities=11% Similarity=0.025 Sum_probs=53.5
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHH
Q 010837 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 403 (499)
-+...|++++|..+|.-+.-.+ .-|..-+..|..+|-..+++++|...|..... .+ .-|+..+-....+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHH
Confidence 3445677777777777665543 22333345555556666777777777766552 11 123334445566777777777
Q ss_pred HHHHHHHhCCCCCC
Q 010837 404 QALKFVLEMPEKPN 417 (499)
Q Consensus 404 ~a~~~~~~~~~~~~ 417 (499)
.|+..|....++|.
T Consensus 123 ~A~~~f~~a~~~~~ 136 (165)
T PRK15331 123 KARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHhCcc
Confidence 77777776666443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.19 Score=39.06 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=45.8
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 010837 394 DLLGRAGSLEQALKFVLEMPEK-----PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (499)
....+.|++++|.+.|+.+..+ -....-..|+.+|.+.+++++|...+++.++++|.....-|.....++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3345667777777777777662 2234555677777778888888888888887777654444544444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.017 Score=34.81 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 460 (499)
++..+..+|...|++++|+++++++++..|+. +..+..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~-~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD-PEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHHhh
Confidence 45566677777777777777777777777766 55555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.4 Score=41.13 Aligned_cols=128 Identities=14% Similarity=0.133 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHH-HHHHHH
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYS-MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVW-AALLSS 427 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~-~~l~~~ 427 (499)
..|...+.+-.+..-++.|..+|-+.. +.+ +.+++.++++++..+ ..|+...|.++|+--.. -||...| +-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~r-k~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLR-KEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHh-ccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 456667777777888999999999998 546 567889999999865 46888999999987665 3666554 344555
Q ss_pred HhhcCCHHHHHHHHHHHHhc--CCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 428 CRLHDDVEMANIAANEIFKL--NANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+...+|-+.|..+|+..++. ..+. ..+|..++..-..-|+...+..+=++|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~-k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQL-KRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhh-hHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 67788999999999865542 1122 56888999888888988777766666544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.3 Score=46.71 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=67.5
Q ss_pred HHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHH
Q 010837 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
+...+.|+++.|.++.++.. +...|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 44567788888887766654 566888888888888888888888877543 4455555666777776666
Q ss_pred HHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 372 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
+.+....+ |- ++....++.-.|+.++..+++.+...
T Consensus 395 l~~~a~~~-~~------~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 395 LAKIAEER-GD------INIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHHHc-cC------HHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 66555522 21 45555556666888877777766553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.14 Score=44.30 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=44.4
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCCHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-----KPNSDVWAALL 425 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~l~ 425 (499)
.|+..+..+ +.|++..|...|....+++.-.+ ....+--|..++...|++++|..+|..+.. +.-+..+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444332 33445555555555553321111 122333445555555555555555544433 11123444444
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 426 SSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
....+.|+.++|..+|+++.+.-|..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 44555555555555555555544443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.066 Score=46.24 Aligned_cols=96 Identities=21% Similarity=0.209 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC--CchhHHHH
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPEK-P----NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR--PGAYVALS 460 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 460 (499)
.|+.-+. +.+.|++..|..-|....++ | ....+-.|..++...|++++|..+|..+.+..|+.. +..+.-|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5776665 45778899999999988873 2 234666789999999999999999999998665541 57888999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC
Q 010837 461 NTLAAAGKWDSVTELREKMKLRGV 484 (499)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~~~~~ 484 (499)
.+..+.|+.++|..+|+++.+.-.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 999999999999999999987643
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.11 Score=48.45 Aligned_cols=100 Identities=11% Similarity=-0.025 Sum_probs=65.9
Q ss_pred CCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCCh----HHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHH
Q 010837 40 SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNT----NISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115 (499)
Q Consensus 40 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (499)
.+|.+...++.+..++...|++++|...|++.++.. |+. .+|..+..+|...|++++|+..+++..+.+...|.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~ 147 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFS 147 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHH
Confidence 456777888888888888899999999998888775 442 35778888888888888888888877654222332
Q ss_pred HHHH--HHHhCCChhhHHHHHHHHHHcC
Q 010837 116 YMIA--GYLKNGQVEESLSLVRKLVSSG 141 (499)
Q Consensus 116 ~li~--~~~~~g~~~~a~~~~~~m~~~g 141 (499)
.+.. .+...++..+..++++.+.+.|
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 1111 0111223345556666666655
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.57 Score=45.56 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=88.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHcc----cCcHHHHHHHHHHchHhcCCCCChh
Q 010837 318 WTSMIDGYGKNGNPNQALELFCMMQECC-VQPNY-----VTFLGALSACGH----AGLVDKGREIFESMERDYSMKPKME 387 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~ 387 (499)
...++....-.|+-+.+++.+.+..+.+ +.-.. -.|...+..++. ....+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3344455555666666666666654422 11111 123333333322 45677778888777733 46554
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhH-HH
Q 010837 388 HYAC-MVDLLGRAGSLEQALKFVLEMPE------KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV-AL 459 (499)
Q Consensus 388 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l 459 (499)
.|.. -.+.+...|+.++|++.|++... +.....+--+...+...+++++|.+.+..+.+...-. ..+|. ..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-ka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-KAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH-HHHHHHHH
Confidence 4432 23445567888888888876554 1122334445556667778888888888877754332 23333 33
Q ss_pred HHHHHhcCCh-------HHHHHHHHHHH
Q 010837 460 SNTLAAAGKW-------DSVTELREKMK 480 (499)
Q Consensus 460 ~~~~~~~g~~-------~~A~~~~~~~~ 480 (499)
+-++...|+. ++|.+++.+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3344566766 77777776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.009 Score=33.58 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=28.6
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHH
Q 010837 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
++++++.+|.. +.+|+.++.+|...|++++|++
T Consensus 2 y~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 67788888888 8999999999999999998863
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.12 Score=47.11 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=77.4
Q ss_pred HHHHhcCChHHHHHHHHhcCC------------------CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010837 292 DMYAKCGKIDDARRVFDHMQQ------------------KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353 (499)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 353 (499)
..|.+.|++..|..-|+++.. .-..+++.+..++.+.+++..|++.-++.+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 457888888888888777542 012355666677777777777777777777653 5556565
Q ss_pred HHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHH-HHHHHHhCCC
Q 010837 354 LGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQ-ALKFVLEMPE 414 (499)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 414 (499)
-.=..+|...|+++.|...|+.+. .+.| |..+-+.|+.+--+..+..+ ..++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~---k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKAL---KLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677777778888888887777 4456 55555556655555444443 3556666654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.9 Score=40.27 Aligned_cols=244 Identities=13% Similarity=0.075 Sum_probs=126.5
Q ss_pred HHHHHHHHcCCCCchh-HHHHHHHHHHhCCChhHHHHHHHhcc--------CCChHhHHHHHHHHHhCCCHHHHHHHHHh
Q 010837 172 MVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIVFDMML--------EKNVICSTSMISGFMSQGFVEDAEEIFRK 242 (499)
Q Consensus 172 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (499)
+++......-+.|+.. +...|...+.. +.+++..+.+.+. +.=+.++..++...++.++..+|.+.+.-
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333334444455543 34445554444 4455544444432 22356788888889999999999887765
Q ss_pred cC--CCChhh-------HHHHHHHHhcChhhH---HHHHHHHHHHHHcccCCCchhHHHH---HHHHHhcCC-hHHHHHH
Q 010837 243 TV--EKDIVV-------YNAMIEGYSISIETA---RKALEVHCQLIKNVFFEDVKLGSAL---VDMYAKCGK-IDDARRV 306 (499)
Q Consensus 243 ~~--~~~~~~-------~~~ll~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~-~~~a~~~ 306 (499)
+. +|+... -..+....+...... ..-+.+++......+... .....| ..-+-+.|. -++|.++
T Consensus 324 L~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnL 402 (549)
T PF07079_consen 324 LKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNL 402 (549)
T ss_pred HHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 54 443321 112222222111111 122334444444333211 111112 222344454 6677777
Q ss_pred HHhcCC---CChhHHHHHH----HHHHh---CCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHH--HcccCcHHHHH
Q 010837 307 FDHMQQ---KNVFTWTSMI----DGYGK---NGNPNQALELFCMMQECCVQPNY----VTFLGALSA--CGHAGLVDKGR 370 (499)
Q Consensus 307 ~~~~~~---~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~--~~~~~~~~~a~ 370 (499)
++.+.+ -|...-|.+. .+|.+ ...+.+-..+-+-+.+.|++|-. ..-+.|.+| +...|++.++.
T Consensus 403 Lk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 403 LKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 777664 2333333222 12221 22344444444445566666532 333444333 44567787777
Q ss_pred HHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 010837 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423 (499)
Q Consensus 371 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 423 (499)
-.-..+. .+.|++.+|..+.-++....++++|..++..+. |+..++++
T Consensus 483 ~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 483 LYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 6665555 567888888888888888888888888888776 35555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.14 Score=44.24 Aligned_cols=100 Identities=14% Similarity=0.203 Sum_probs=78.0
Q ss_pred HHHHHHHhcC--CCChhHHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC----------
Q 010837 302 DARRVFDHMQ--QKNVFTWTSMIDGYGK-----NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG---------- 364 (499)
Q Consensus 302 ~a~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------- 364 (499)
..+..|..+. +.|-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 5677788888877764 3567777788899999999999999999998876543
Q ss_pred ------cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCH
Q 010837 365 ------LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 365 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 402 (499)
+-+-++++++.|. .+|+.||..+-..|+.++++.+..
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 2245788999998 889999999999999999887753
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.56 E-value=2.4 Score=44.65 Aligned_cols=153 Identities=10% Similarity=0.051 Sum_probs=80.0
Q ss_pred CChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhc---ChhhHHHHHHHHHHHH
Q 010837 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI---SIETARKALEVHCQLI 276 (499)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~ 276 (499)
++++.|+.-+.++. ...|.-.+..--+.|.+.+|+.++ .|+...+.....+|+. ....+++|.-.|+..-
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly----~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY----KPDSEKQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee----ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 34444444444433 222333333344455555555554 3555555544444321 1234444444444332
Q ss_pred HcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhH---HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010837 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT---WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353 (499)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 353 (499)
+. ...+.+|..+|++.+|..+-.++...-... -..|..-+...+++-+|-++..+.... |
T Consensus 967 kl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~----- 1029 (1265)
T KOG1920|consen 967 KL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P----- 1029 (1265)
T ss_pred cH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----
Confidence 21 224566777777777777777766542222 256777777888888888887776542 1
Q ss_pred HHHHHHHcccCcHHHHHHHHHHc
Q 010837 354 LGALSACGHAGLVDKGREIFESM 376 (499)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~ 376 (499)
...+..+++...+++|..+-...
T Consensus 1030 ~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1030 EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHhhHhHHHHHHHHHHhc
Confidence 22334445555666666654433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=2.8 Score=41.43 Aligned_cols=86 Identities=12% Similarity=0.003 Sum_probs=43.9
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHh-CCC--------CChHHHHHHHHHHHcCCChhHHHHHhccCCCCChH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKT-GVK--------PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLS 112 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 112 (499)
-|-+..|..+.......-.++.|...|-+.... |++ .+...-.+=+.+ --|++++|++++-.+.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhhh
Confidence 344555655555555555555555555433221 221 111111122222 248999999999888877643
Q ss_pred HHHHHHHHHHhCCChhhHHHHH
Q 010837 113 AYNYMIAGYLKNGQVEESLSLV 134 (499)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~ 134 (499)
|..+.+.|+|-.+.+++
T Consensus 767 -----ielr~klgDwfrV~qL~ 783 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLI 783 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHH
Confidence 34444555555554444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.6 Score=38.48 Aligned_cols=170 Identities=15% Similarity=0.090 Sum_probs=102.6
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcC
Q 010837 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381 (499)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 381 (499)
...+++++...+....-..-.......|++.+|..+|+...... +-+...-..+..+|...|+.+.|..++..+-.+..
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 34445555444322222223344567788888888888877653 22345556677888888888888888887653211
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc--CCCCCCchhHH
Q 010837 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP-NSDVWAALLSSCRLHDDVEMANIAANEIFKL--NANDRPGAYVA 458 (499)
Q Consensus 382 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 458 (499)
.........-+..+.+.....+...+-.+.-..| |...-..+...+...|+.+.|.+.+=.+++. +... ...-..
T Consensus 200 -~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d-~~~Rk~ 277 (304)
T COG3118 200 -DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED-GEARKT 277 (304)
T ss_pred -hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC-cHHHHH
Confidence 1111111223344444444444444444444444 6667777788888889999888877776654 3333 677788
Q ss_pred HHHHHHhcCChHHHHH
Q 010837 459 LSNTLAAAGKWDSVTE 474 (499)
Q Consensus 459 l~~~~~~~g~~~~A~~ 474 (499)
++..+...|.-+.+..
T Consensus 278 lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 278 LLELFEAFGPADPLVL 293 (304)
T ss_pred HHHHHHhcCCCCHHHH
Confidence 8888888885554433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.3 Score=37.54 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=27.4
Q ss_pred HHHHHHhCCChhHHHHHHHhccCC------ChHhHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 192 LVDSYVKGGKTSYARIVFDMMLEK------NVICSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
....+...|++++|++.|+.+... .....-.++.++.+.|++++|...+++..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334455566666666666666431 12234445555666666666666665544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.15 Score=39.10 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 010837 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM-PEKPNSDVWAALLSS 427 (499)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~ 427 (499)
|..++..++.++++.|+++....+++..- |+..+...- .+. +..- .-.|+..+..+++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~~---------~~~-------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKKK---------EGD-------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCccc---------cCc-------cCCCCCCCCCHHHHHHHHHH
Confidence 34566667777777777777766665544 444432100 000 0000 003666666677777
Q ss_pred HhhcCCHHHHHHHHHHHHhcC-CCCCCchhHHHHHHHH
Q 010837 428 CRLHDDVEMANIAANEIFKLN-ANDRPGAYVALSNTLA 464 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 464 (499)
|+..|++..|.++++...+.- ++.....|..|++-..
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 766677777777666665532 2222445555555433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.43 Score=44.89 Aligned_cols=159 Identities=12% Similarity=0.080 Sum_probs=104.0
Q ss_pred hHH--HHHHHHHHhC-----CChhHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHcc---------cCcHHHHHHHHHHch
Q 010837 316 FTW--TSMIDGYGKN-----GNPNQALELFCMMQEC-CVQPNY-VTFLGALSACGH---------AGLVDKGREIFESME 377 (499)
Q Consensus 316 ~~~--~~l~~~~~~~-----g~~~~a~~~~~~m~~~-~~~p~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 377 (499)
..| ..++.+.... ...+.|+.+|.+.... ...|+. ..|..+..++.. ..+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555555442 2356788888888721 245553 456666555432 223456666666666
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCC-
Q 010837 378 RDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP- 453 (499)
Q Consensus 378 ~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 453 (499)
.+.| |......+..++.-.++++.|..+|++... .|| ..+|......+.-.|+.++|.+.+++..+..|.--.
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 4455 677777777777888889999999999887 454 456666666777899999999999999888876522
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHH
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
......+..|... ..++|.+++-+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhh
Confidence 2233333355554 45777777644
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.12 E-value=3.5 Score=40.16 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=104.8
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHc-CCCCCh-----hhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhH
Q 010837 115 NYMIAGYLKNGQVEESLSLVRKLVSS-GERPDG-----YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188 (499)
Q Consensus 115 ~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-----~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 188 (499)
..+++...-.|+-+.+++.+.+-.+. |+.-.. ..|..++..+..... ...+.+.+.+++..+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~-~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDG-EDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcc-cCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 34555566689999999999886654 222221 245555554432111 466778888888888764 466555
Q ss_pred HHH-HHHHHHhCCChhHHHHHHHhccCC-------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHH
Q 010837 189 YTA-LVDSYVKGGKTSYARIVFDMMLEK-------NVICSTSMISGFMSQGFVEDAEEIFRKTVEK---DIVVYNAMIEG 257 (499)
Q Consensus 189 ~~~-l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~ 257 (499)
|.. -.+.+...|++++|++.|+..... ....+--+...++-.+++++|.+.|..+.+. ....|..+..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 543 445677889999999999976431 2345666778888899999999999998843 34556666666
Q ss_pred HhcChhhH-------HHHHHHHHHHHH
Q 010837 258 YSISIETA-------RKALEVHCQLIK 277 (499)
Q Consensus 258 ~~~~~~~~-------~~a~~~~~~~~~ 277 (499)
|....+.. ++|..++.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 65444555 666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.8 Score=36.87 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=66.9
Q ss_pred cCcHHHHHHHHHHchHhcC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCH-HHHHHHHHHHhh
Q 010837 363 AGLVDKGREIFESMERDYS----MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-------KPNS-DVWAALLSSCRL 430 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~-~~~~~l~~~~~~ 430 (499)
..++++|+++|++...-.. ...-...|..+.+.+.+..++++|-..+.+-.. -++. ..|...|-.+..
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 3456666666665442111 011123455666677777888777666554433 1222 345556666777
Q ss_pred cCCHHHHHHHHHHHHhcC----CCCCCchhHHHHHHHHhcCChHHHHHHHH
Q 010837 431 HDDVEMANIAANEIFKLN----ANDRPGAYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
..|+..|...++.-.+.+ ++. ..+...|+.+| ..|+.+++.+++.
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed-~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSED-SRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHH-HHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 788999988888755532 222 56677777777 4567777776654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.21 Score=37.67 Aligned_cols=103 Identities=20% Similarity=0.168 Sum_probs=69.6
Q ss_pred HHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCC----HHHHHHHHHHHhhc
Q 010837 359 ACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPN----SDVWAALLSSCRLH 431 (499)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~~l~~~~~~~ 431 (499)
+....|+++.|++.|.... .+-| ....||.-..++.-.|+.++|++-+++..+ .+. -..|..-...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4567788888888888777 4455 667788888888888888888888877765 121 12344444556777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
|+.+.|..-|+.+-+.|... ...-...++=|+.
T Consensus 129 g~dd~AR~DFe~AA~LGS~F-Ar~QLV~lNPYAA 161 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKF-AREQLVELNPYAA 161 (175)
T ss_pred CchHHHHHhHHHHHHhCCHH-HHHHHHhcChHHH
Confidence 88888888888888877655 4333344444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.99 E-value=1 Score=42.71 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE-KP---NSDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
..+-..|..+..+.|+.++|++.++++.+ .| +......|+.++...+.+.++..++.+--+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33445567777778888888888887764 22 234566777888888888888877777543
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.14 Score=38.67 Aligned_cols=91 Identities=12% Similarity=0.012 Sum_probs=57.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCCh--hHHHHHHHHHHhcC
Q 010837 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM--EHYACMVDLLGRAG 400 (499)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~ 400 (499)
-+++..|+.+.|++.|.+.... .+-....||.-.+++.-+|+.++|.+-+++..+-.|-+... ..|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3556677888888888777764 34466778877788877888888887777777544433211 12222233456677
Q ss_pred CHHHHHHHHHhCCC
Q 010837 401 SLEQALKFVLEMPE 414 (499)
Q Consensus 401 ~~~~a~~~~~~~~~ 414 (499)
+-+.|..-|+..-.
T Consensus 130 ~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 130 NDDAARADFEAAAQ 143 (175)
T ss_pred chHHHHHhHHHHHH
Confidence 77777777765543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.84 E-value=4.9 Score=40.38 Aligned_cols=322 Identities=12% Similarity=0.150 Sum_probs=154.8
Q ss_pred hhCCCChhhHHHHHHHHHHhCCCC---ChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHH
Q 010837 55 YINSDTPFYGLKIHAHITKTGVKP---NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESL 131 (499)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 131 (499)
+.+.+.+++|++..+... |..| ...+....+..+.-.|++++|-...-.|...+..-|..-+..++..++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 345566666666655432 3334 34566777778888888888888887777777777777777776666554332
Q ss_pred HHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHh
Q 010837 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211 (499)
Q Consensus 132 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 211 (499)
. -+.......+...|..+|..+ . .++...|..++.-+- |+.=.+..+.+.
T Consensus 444 ~---~lPt~~~rL~p~vYemvLve~-----L--------------------~~~~~~F~e~i~~Wp--~~Lys~l~iisa 493 (846)
T KOG2066|consen 444 P---YLPTGPPRLKPLVYEMVLVEF-----L--------------------ASDVKGFLELIKEWP--GHLYSVLTIISA 493 (846)
T ss_pred c---cCCCCCcccCchHHHHHHHHH-----H--------------------HHHHHHHHHHHHhCC--hhhhhhhHHHhh
Confidence 2 222222223445566666555 1 122222222222211 111111111111
Q ss_pred ccC------CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHH-HHHHHHHHcccCCCc
Q 010837 212 MLE------KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL-EVHCQLIKNVFFEDV 284 (499)
Q Consensus 212 ~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~ 284 (499)
... .+...-..|+..|...+++..|+.++-...+++....-.--..+ +... ++...|.-. .
T Consensus 494 ~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~nL~-------d~i~~~Iv~Lmll~-----s 561 (846)
T KOG2066|consen 494 TEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVFDLIKKHNLF-------DQIKDQIVLLMLLD-----S 561 (846)
T ss_pred cchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChHHHHHHHHHhhH-------HHHHHHHHHHHccc-----h
Confidence 111 12233444888899999999999999888766544321111111 1111 111111100 0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCC------ChhHHHHHHHHHHHcCCCC-----CHHHH
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG------NPNQALELFCMMQECCVQP-----NYVTF 353 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~a~~~~~~m~~~~~~p-----~~~~~ 353 (499)
...++.+....+.-....++++... ++...+..+..+.... -.++.+++|.+.-....-| .....
T Consensus 562 ---kka~~lLldn~d~ip~a~Vveql~~-~P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~l 637 (846)
T KOG2066|consen 562 ---KKAIDLLLDNRDSISPSEVVEQLED-NPKLLYCYLHKLFKRDHFMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNL 637 (846)
T ss_pred ---hhHHHHHhhccccCCHHHHHHHHhc-ChHHHHHHHHHHhhcCccccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCH
Confidence 0223333333333333444444442 2222222222222211 1334555555543332222 11223
Q ss_pred HHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 010837 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433 (499)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 433 (499)
...+..|.+.|-+++-.-++.+|- .++.+|...--+.+++++|+++.++ +.|...|..||.-+...-.
T Consensus 638 ekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 638 EKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPE 705 (846)
T ss_pred HHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcH
Confidence 344555556666666655555553 1234444444455666776666554 4577788888776655444
Q ss_pred HHH
Q 010837 434 VEM 436 (499)
Q Consensus 434 ~~~ 436 (499)
+-.
T Consensus 706 ~~~ 708 (846)
T KOG2066|consen 706 FIK 708 (846)
T ss_pred HHH
Confidence 333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=2.3 Score=36.51 Aligned_cols=193 Identities=17% Similarity=0.103 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC-----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQ-----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS-A 359 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~ 359 (499)
.+......+...+.+..+...+..... .....+......+...++...+.+.+.........+ ......... +
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 333444445555555555554444321 223334444444444555555555555554432222 111111111 4
Q ss_pred HcccCcHHHHHHHHHHchHhcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-C-CHHHHHHHHHHHhhcCCH
Q 010837 360 CGHAGLVDKGREIFESMERDYSM--KPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-K-P-NSDVWAALLSSCRLHDDV 434 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~-~~~~~~~l~~~~~~~~~~ 434 (499)
+...|+++.|...+..... ..- ......+......+...++.+.+...+.+... . . ....+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 4555555555555555531 110 01122222233334445555555555555544 1 2 234455555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+.|...+.......+.. ...+..+...+...|.++++...+++...
T Consensus 219 ~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELDPDN-AEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhCccc-HHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666555555554442 23344444444444455555555554443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.6 Score=34.45 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=51.0
Q ss_pred hHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCC
Q 010837 47 SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126 (499)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 126 (499)
....++..+...+.+.....+++.+...+ ..+...++.++..|++.++ ++....++. ..+......+++.|.+.+-
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 34566777777777888888888887776 4677777888888876532 333344431 1222223335555555555
Q ss_pred hhhHHHHHHHH
Q 010837 127 VEESLSLVRKL 137 (499)
Q Consensus 127 ~~~a~~~~~~m 137 (499)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.7 Score=41.82 Aligned_cols=153 Identities=17% Similarity=0.116 Sum_probs=76.5
Q ss_pred HHhcCChHHHHHHHH--hcC-CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHH
Q 010837 294 YAKCGKIDDARRVFD--HMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~--~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 370 (499)
..-.|+++++.++.+ ++. .-+....+.++.-+.+.|..+.|+++.++-. .-| ....+.|+++.|.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rF----eLAl~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD--------HRF----ELALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHH----HHHHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HHh----HHHHhcCCHHHHH
Confidence 344566666554443 111 1123345666666667777777776533221 112 2233557777776
Q ss_pred HHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 371 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
++.++. .+...|..|.+...+.|+++-|.+.|.+..+ |..|+-.|...|+.+.-.++.+.....|-
T Consensus 339 ~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 339 EIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 654322 2445677777777777777777777777664 44455556666666666555555544432
Q ss_pred CCCchhHHHHHHHHhcCChHHHHHHHH
Q 010837 451 DRPGAYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
++....++.-.|++++..+++.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHH
Confidence 3334444444555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.047 Score=32.86 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=33.9
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccccccC
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 496 (499)
.++..+..+|.+.|++++|.+++++..+. .|+....|..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHhh
Confidence 57889999999999999999999999884 566666665543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=2.7 Score=36.34 Aligned_cols=157 Identities=16% Similarity=0.113 Sum_probs=91.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh--
Q 010837 323 DGYGKNGNPNQALELFCMMQECCV--QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR-- 398 (499)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 398 (499)
..-.+.|++++|.+.|+.+..... +-...+...++.++.+.++.+.|....++..+.++-.|+.. |...|.+++.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhc
Confidence 334556777777777777665421 11234555566666677777777777777765555555533 3333333321
Q ss_pred -----cCCHHH---HHHHHHhCCCC-------CCHHH------------HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 399 -----AGSLEQ---ALKFVLEMPEK-------PNSDV------------WAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 399 -----~~~~~~---a~~~~~~~~~~-------~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..+... |..-|++...+ ||... =..+.+-|.+.|.+-.|..-++++++.-+..
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 122222 22233333221 22211 1234566889999999999999999874443
Q ss_pred --CCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 452 --RPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 452 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
....+..+..+|.+.|-.++|.+.-+-+.
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 13456677888999999999988765543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.95 Score=35.26 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=26.3
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 325 YGKNGNPNQALELFCMMQECCVQP---NYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
..+.|++++|.+.|+.+... .+. ....-..++.+|.+.+++++|...+++.+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34455555555555555543 111 12334445555555555555555555555
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.5 Score=39.48 Aligned_cols=130 Identities=14% Similarity=0.207 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh--cC----ChHHHHHHHHhcCCC-------ChhHHHHHHHHHHhCC
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK--CG----KIDDARRVFDHMQQK-------NVFTWTSMIDGYGKNG 329 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~g 329 (499)
...+....+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|++. +-..+..++.. ..+
T Consensus 76 ~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~ 153 (297)
T PF13170_consen 76 EAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSE 153 (297)
T ss_pred HHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccc
Confidence 4455677888899999998888777654333332 22 355788899999862 33445554433 223
Q ss_pred C----hhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHcccCc--HHHHHHHHHHchHhcCCCCChhHHHHHHHH
Q 010837 330 N----PNQALELFCMMQECCVQPNYV--TFLGALSACGHAGL--VDKGREIFESMERDYSMKPKMEHYACMVDL 395 (499)
Q Consensus 330 ~----~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 395 (499)
+ .+.++.+|+.+.+.|+..+.. ..+.++..+..... ..++.++++.+. +.|+++....|..+.-.
T Consensus 154 ~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 154 DVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGLL 226 (297)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHHH
Confidence 3 456778888888888765443 44444443332222 457888888888 55988877777665443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.6 Score=34.83 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=53.1
Q ss_pred cccCcHHHHHHHHHHchHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKPKM-EHYACMVDLLGRAGSLEQALKFVLEMPEK-PNSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
.+.++.+.+..++..+. -+.|.. ..-..-...+.+.|+|.+|+.+|+++... |....-..|+..|....+-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 45567777777777766 445532 22222233356777777777777777663 33333444444444333222233
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHH
Q 010837 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473 (499)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (499)
..-+++.+.+..+ .-..++..+....+...|.
T Consensus 98 ~~A~evle~~~d~---~a~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 98 RYADEVLESGADP---DARALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHhcCCCh---HHHHHHHHHHHhccccchh
Confidence 3344455555444 2233444444444333333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.37 E-value=1 Score=40.50 Aligned_cols=167 Identities=10% Similarity=0.085 Sum_probs=109.1
Q ss_pred HhCCChhHHHHHHHHHHHcC--CCCCHH------HHHHHHHHHcccCcHHHHHHHHHHchHhc-------CCCCC-----
Q 010837 326 GKNGNPNQALELFCMMQECC--VQPNYV------TFLGALSACGHAGLVDKGREIFESMERDY-------SMKPK----- 385 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~--~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~p~----- 385 (499)
.+.|+.+.|..++.+..... ..|+.. .|+.-...+.+..+++.|..++++..+-. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 57899999999999986643 234332 24444444444339999999998876331 12222
Q ss_pred hhHHHHHHHHHHhcCCHH---HHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 010837 386 MEHYACMVDLLGRAGSLE---QALKFVLEMPE-KPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 460 (499)
..+...++.+|...+..+ +|.++++.+.. -|+ ...+..-++.+.+.++.+++.+.+.+|+..-.-+ ...+...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~-e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS-ESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc-cchHHHHH
Confidence 235677888888777655 56666666644 244 4555566677777899999999999999875434 45555555
Q ss_pred HHHHh--cCChHHHHHHHHHHHhCCCccCccccccc
Q 010837 461 NTLAA--AGKWDSVTELREKMKLRGVLKDTGCSWVG 494 (499)
Q Consensus 461 ~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 494 (499)
..+.. ......|...++.+....+.|.... |++
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e 197 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLE 197 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHH
Confidence 55532 2334678888888887777777655 654
|
It is also involved in sporulation []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.35 E-value=3 Score=35.69 Aligned_cols=57 Identities=11% Similarity=0.125 Sum_probs=29.4
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCC-CC-ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSM-KP-KMEHYACMVDLLGRAGSLEQALKFVL 410 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 410 (499)
|...|-.+....++..|.+.++.--+-.++ .+ +..+...|+.+| ..|+.+++.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 444444555556666666666653221122 12 455556666655 4466666555543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=2.8 Score=35.08 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=16.6
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.+|..|+..|...|+.++|..+|+-.+..+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 455555555556666666655555544443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=3.4 Score=35.76 Aligned_cols=157 Identities=13% Similarity=0.113 Sum_probs=97.0
Q ss_pred HHhcCChHHHHHHHHhcCCC------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHc---cc-
Q 010837 294 YAKCGKIDDARRVFDHMQQK------NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG---HA- 363 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~- 363 (499)
-.+.|++++|.+.|+.+... ...+.-.++-++.+.++++.|+..+++....-..-....|...|.+++ ..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 45678888888888888753 223445566677788888888888888766532222223333333332 11
Q ss_pred ---C---cHHHHHHHHHHchHhcCCC---CChhH------------HHHHHHHHHhcCCHHHHHHHHHhCCCC-----CC
Q 010837 364 ---G---LVDKGREIFESMERDYSMK---PKMEH------------YACMVDLLGRAGSLEQALKFVLEMPEK-----PN 417 (499)
Q Consensus 364 ---~---~~~~a~~~~~~~~~~~~~~---p~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 417 (499)
. ....|..-|+.+..++.-. ||... =-.+.+-|.+.|.+..|..-++++.+. -.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 1 2345555566666443211 12111 123445688999999999999998873 22
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
...+-.+..+|...|-.++|...-+-+...-|+
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 356777888999999999998776555444443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=7.5 Score=39.56 Aligned_cols=93 Identities=8% Similarity=-0.192 Sum_probs=56.1
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc---CCCCCCchhHHHHHHHHhcCChH
Q 010837 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL---NANDRPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 470 (499)
..+...|+...|...+..+....+......+.....+.|..+.++......... .... +..|...+..+.+.-.++
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF-PLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC-CcchHHHHHHHHHHcCCC
Confidence 445667888888887777666556566666666667778888777666543321 1111 334666666666665666
Q ss_pred HHHHHHHHHHhCCCccC
Q 010837 471 SVTELREKMKLRGVLKD 487 (499)
Q Consensus 471 ~A~~~~~~~~~~~~~~~ 487 (499)
.+.-.---..+.++.|+
T Consensus 494 ~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 494 QSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 55543333346666665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.31 Score=42.90 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh-----cCCCCCCchhHHH
Q 010837 387 EHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFK-----LNANDRPGAYVAL 459 (499)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 459 (499)
.++..++..+...|+++.+.+.+++... +-+...|..++.+|.+.|+...|+..|+++.+ .|++|.+.+...+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4566677777777777777777777665 34666777777777777777777777776654 4555533333333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.73 Score=41.52 Aligned_cols=193 Identities=13% Similarity=0.103 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH-------hcCCC--ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCC---CHHH
Q 010837 286 LGSALVDMYAKCGKIDDARRVFD-------HMQQK--NVFTWTSMIDGYGKNGNPNQALELFCMMQEC-CVQP---NYVT 352 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~-------~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p---~~~~ 352 (499)
++..+..+..+.|.+++++..-- +..+. -...|..+..++-+.-++.+++.+-+.-... |..| -...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 44445556666666666543211 11111 1123444445554444455555443332221 2222 1123
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCC--CC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----C-CC-----
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSM--KP--KMEHYACMVDLLGRAGSLEQALKFVLEMPE-----K-PN----- 417 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~-~~----- 417 (499)
..++..++...+.++++.+.|+...+-..- .| ...+|..|...|.+..++++|.-+..+..+ . .|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 334556666777777777777766622111 11 234677788888888888877766555433 0 11
Q ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc----CCCC-CCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 418 -SDVWAALLSSCRLHDDVEMANIAANEIFKL----NAND-RPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 418 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
......+.-++...|..-.|.+..++..+. |-.+ -......+...|...|+.+.|..-++.
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 112333445566777777777777766553 3222 022344677778888887777666654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.02 E-value=2.4 Score=34.85 Aligned_cols=89 Identities=15% Similarity=-0.012 Sum_probs=47.5
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcC
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKPKM----EHYACMVDLLGRAGSLEQALKFVLEMPEK-PNSDVWAALLSSCRLHD 432 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 432 (499)
..+...|++++|...++... +.+.|. ..--.|.+.....|.+|+|+.+++....+ -.......-.+.+...|
T Consensus 97 k~~ve~~~~d~A~aqL~~~l---~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQAL---AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHhhccHHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcC
Confidence 44556666666666666555 111121 11223344455666666666666665542 12222333445566666
Q ss_pred CHHHHHHHHHHHHhcCC
Q 010837 433 DVEMANIAANEIFKLNA 449 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~ 449 (499)
+-++|+.-|++..+.+.
T Consensus 174 ~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 174 DKQEARAAYEKALESDA 190 (207)
T ss_pred chHHHHHHHHHHHHccC
Confidence 66666666666666553
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.99 E-value=2.4 Score=33.33 Aligned_cols=125 Identities=12% Similarity=0.070 Sum_probs=62.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh
Q 010837 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398 (499)
Q Consensus 319 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 398 (499)
..++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....++. ..+.......+..+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 345555555666666666666666654 345556666666666542 2333333331 0111222335555556
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 010837 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH-DDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464 (499)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (499)
.+.++++.-++.++.. +...+..+... ++.+.|.+++++. . ++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~~-----~-~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVKQ-----N-NPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHhC-----C-CHHHHHHHHHHHH
Confidence 6666666666666543 11122222222 5666666655541 1 2445555555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=3.6 Score=38.97 Aligned_cols=140 Identities=13% Similarity=0.053 Sum_probs=95.8
Q ss_pred ChHHHHHHHHhcC---CCC---hhHHHHHHHHHHh---------CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 010837 299 KIDDARRVFDHMQ---QKN---VFTWTSMIDGYGK---------NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363 (499)
Q Consensus 299 ~~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 363 (499)
..+.|..+|.+.. +-| ...|..+..++.. ..+..+|.++-++..+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4567888999887 434 4455555444332 223556777777777765 56788887887777888
Q ss_pred CcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH---HHHHHHHHHHhhcCCHHHHH
Q 010837 364 GLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNS---DVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~---~~~~~l~~~~~~~~~~~~a~ 438 (499)
++.+.|...|++.. .+.|| ...|........-.|+.++|.+.+++... .|.. ......+..|+.. ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999998 66784 44555555556678999999999999665 4543 3344445566554 467777
Q ss_pred HHHHH
Q 010837 439 IAANE 443 (499)
Q Consensus 439 ~~~~~ 443 (499)
.++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 77654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.045 Score=43.51 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=68.8
Q ss_pred HHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChh
Q 010837 49 PSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE 128 (499)
Q Consensus 49 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 128 (499)
..+++.+.+.+.+.....+++.+...+...+...++.++..|++.++.++...+++.... .-...++..|-+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 346777888899999999999999887677899999999999999999999999885433 33345777778888888
Q ss_pred hHHHHHHHHHH
Q 010837 129 ESLSLVRKLVS 139 (499)
Q Consensus 129 ~a~~~~~~m~~ 139 (499)
++.-++.++-.
T Consensus 88 ~a~~Ly~~~~~ 98 (143)
T PF00637_consen 88 EAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHccc
Confidence 88888877543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.79 E-value=7.1 Score=38.07 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=123.0
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCV--QPNYVTFLGAL 357 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll 357 (499)
+..+|..-++.-.+.|+.+.+.-+|++..-| -...|--.+.-....|+.+-|..++....+--+ .|....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456777777788889999999999887754 223444444444455888888887776654322 33333333333
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCCChh-HHHHHHHHHHhcCCHHHHH---HHHHhCCC-CCCHHHHHHHHH-----H
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKPKME-HYACMVDLLGRAGSLEQAL---KFVLEMPE-KPNSDVWAALLS-----S 427 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~-~~~~~~~~~l~~-----~ 427 (499)
+...|+++.|..+++.+.++. |+.. .-..-+....+.|..+.+. .++..... +-+..+...+.- .
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 345689999999999998542 5432 2223344456778888877 55555444 223222222222 2
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCC---hHHHHHHHHHHHhCCCccC
Q 010837 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK---WDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~ 487 (499)
+.-.++.+.|..++.++.+..+.. ...|..++......+. .+--.-++..+....+.++
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~-k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~ 512 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDC-KVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFD 512 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCcc-HHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhcccc
Confidence 345678999999999999888877 7778888887776653 2223334444444444444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.65 E-value=5.8 Score=40.30 Aligned_cols=142 Identities=13% Similarity=0.022 Sum_probs=71.2
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHH
Q 010837 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370 (499)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 370 (499)
.+.+.+.|++++|...|-+-..--.. ..+|.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 33445566676666666554321111 12334444555555556666666666643 3333345666777777766665
Q ss_pred HHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010837 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444 (499)
Q Consensus 371 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (499)
++.+... +....-| ....+..+.+.+-.++|..+-.+... +......++ -..+++++|++.++.+
T Consensus 452 efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 452 EFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 5554433 2111112 23344555555666666655554443 223333332 3346777777666543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.52 E-value=3.5 Score=38.52 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---CCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND---RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 416 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
....+|..++..+.+.|.++.|...+.++.+.+... .+......+..+...|+.++|...++...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 455688999999999999999999999998865332 3577778889999999999999999988874333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.29 Score=27.25 Aligned_cols=30 Identities=17% Similarity=0.044 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (499)
+|..+...+...|++++|+..++++++..|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 455566666666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.17 E-value=1 Score=37.07 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 387 EHYACMVDLLGRAGSLEQALKFVLEMPEK-----PNSDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
..+..+.+.|.+.|+.+.|.+.|.++.+. .-...+..+++.....+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666666666666666666666552 1233455566666666666666666655554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.22 Score=28.30 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=18.9
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+|..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677888888888888888887744
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.38 Score=26.65 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
.|..+...+...|++++|++.++++++..|.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3445555666666666666666666655543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.92 E-value=6.8 Score=35.22 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHhcCC--CC-hhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 286 LGSALVDMYAKCGKID---DARRVFDHMQQ--KN-VFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~---~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
++..++.+|...+..+ +|.++++.+.. ++ +..+-.-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455666666666544 34444444432 22 344444555555567777777777777664
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.12 Score=29.37 Aligned_cols=27 Identities=19% Similarity=0.027 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
+|..|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466778888888888888888888554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.38 Score=39.40 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=71.5
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcC
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKPK---MEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHD 432 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~ 432 (499)
.-+.+.|++++|..-|.+......-.+. ...|..-..++.+.+.++.|++-..+..+ .|+ ......-..+|-+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3466889999999999998843221111 22455555677889999999988888776 332 233344455788888
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 010837 433 DVEMANIAANEIFKLNANDRPGAYVALSN 461 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 461 (499)
.+++|++-|+++.+..|.. ...-...++
T Consensus 183 k~eealeDyKki~E~dPs~-~ear~~i~r 210 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSR-REAREAIAR 210 (271)
T ss_pred hHHHHHHHHHHHHHhCcch-HHHHHHHHh
Confidence 9999999999999998877 344444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.46 E-value=4 Score=32.89 Aligned_cols=136 Identities=16% Similarity=0.125 Sum_probs=89.1
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChh-HHHH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV-TFLGALSACGHAGLVDKGREIFESMERDYSMKPKME-HYAC 391 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~ 391 (499)
....|..-+. +++.|..++|+.-|.++.+.|...=+. .-..........|+...|...|+++-.... .|-.. -...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHH
Confidence 3344544444 467788999999999999887543222 122233456788999999999999984422 23221 1111
Q ss_pred H--HHHHHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 392 M--VDLLGRAGSLEQALKFVLEMPEKPN---SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 392 l--~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
| .-.+...|.+++.....+.+....+ ...-..|.-+-.+.|++.+|.+.|..+..-...|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 2 2235678999998888887765322 2344567777789999999999999887743333
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.43 E-value=5.4 Score=32.92 Aligned_cols=90 Identities=13% Similarity=0.003 Sum_probs=66.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH-----HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA-----LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
+...+..++++++|..-++.....|....+.. |.+...+.|.+|+|+..++...+.+..+ .....-+.++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHc
Confidence 44567788888888888887776554444443 4455678888888888888776655544 4556677888888
Q ss_pred CChHHHHHHHHHHHhCC
Q 010837 467 GKWDSVTELREKMKLRG 483 (499)
Q Consensus 467 g~~~~A~~~~~~~~~~~ 483 (499)
|+-++|..-|+.....+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888887776
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.27 E-value=8.5 Score=34.81 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc--cC----cHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhcCCH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGH--AG----LVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~ 402 (499)
+++.+.+++.|.+.|+.-+..+|.+....... .. ...+|..+|+.|++++.+-. +-.++..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788999999998888877664433322 22 35678999999997655432 33344444432 44443
Q ss_pred H----HHHHHHHhCCC----CCCH-HHHHHHHHHHhhcCC--HHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 403 E----QALKFVLEMPE----KPNS-DVWAALLSSCRLHDD--VEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 403 ~----~a~~~~~~~~~----~~~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
+ .+...|+.+.. +.|. .....++..+-...+ ..++.++++.+.+.+.+.....|..++-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 3 44555555444 3333 344444433322222 45788889999999998844444444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.99 E-value=4.5 Score=30.98 Aligned_cols=136 Identities=20% Similarity=0.140 Sum_probs=72.7
Q ss_pred HHhCCCHHHHHHHHHhcCC-CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhH---HHHHHHHHhcCChHH
Q 010837 227 FMSQGFVEDAEEIFRKTVE-KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG---SALVDMYAKCGKIDD 302 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~ 302 (499)
+.-.|..++..++..+... .+..-+|.+|-.... .-...-+++.+..-|--.|.... ..++.+|++.|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiD----aa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~-- 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIID----AADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKL-- 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHH----H--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecch----hhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcch--
Confidence 3445666666666666552 334444444433321 11334455555555543443321 2334444444332
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCC
Q 010837 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382 (499)
Q Consensus 303 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 382 (499)
......-+..+...|+-++-.+++.++.+. -++++.....+..||.+.|+..++.+++.++-+ .|+
T Consensus 86 ------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~ 151 (161)
T PF09205_consen 86 ------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE-KGL 151 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred ------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence 233445567778888888888888888753 477888888888899999999999888888873 365
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.96 E-value=5.7 Score=32.15 Aligned_cols=120 Identities=18% Similarity=0.073 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210 (499)
Q Consensus 131 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 210 (499)
.+.++.+.+.|+.|+...+..++..+ ...+... .+..++..++-+|.......+-.+.. ....+.++--
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lL-----i~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~l 82 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLL-----IRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGL 82 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH-----HHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHH
Confidence 34555556667788888888888777 5555433 33444455555555544443322222 2333334333
Q ss_pred hccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcC
Q 010837 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261 (499)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 261 (499)
.|..+=...+..++..+...|++-+|+++.+....-+......++.+....
T Consensus 83 DMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~ 133 (167)
T PF07035_consen 83 DMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANS 133 (167)
T ss_pred HHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHc
Confidence 333332234566777888888888888888776544444445555555444
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=91.87 E-value=3.5 Score=29.66 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=65.2
Q ss_pred CChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 010837 59 DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV 138 (499)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (499)
..-++|..|-+.+...+- ....+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.+|.
T Consensus 19 HcHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 355788888888877662 234444445566788999999999999999999999987765 45677777777777787
Q ss_pred HcCCCCChhhHHH
Q 010837 139 SSGERPDGYTFSM 151 (499)
Q Consensus 139 ~~g~~p~~~~~~~ 151 (499)
.+| .|...+|..
T Consensus 96 ~sg-~p~lq~Faa 107 (115)
T TIGR02508 96 ASG-DPRLQTFVA 107 (115)
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555544
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.1 Score=39.57 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
.++..++..+...|+.+.+...++++. ...| +...|..+|.+|.+.|+...|+..|+.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li---~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLI---ELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHH---hcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345556666667777777777777776 3455 666777777777777777777777766554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.62 E-value=8.5 Score=33.47 Aligned_cols=239 Identities=15% Similarity=0.174 Sum_probs=129.9
Q ss_pred hCCChhHHHHHHHhccCC-------ChHhHHHHHHHHHhCCCHHHHHHHHHhcC---------CCChhhHHHHHHHHhcC
Q 010837 198 KGGKTSYARIVFDMMLEK-------NVICSTSMISGFMSQGFVEDAEEIFRKTV---------EKDIVVYNAMIEGYSIS 261 (499)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~ll~~~~~~ 261 (499)
+..++++|+.-|+++.+- +..+...++....+.|++++..+.|.++. .-+..+.|.++.-.+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 344677777777776442 23455667777888888888888777765 12334555665555443
Q ss_pred hhhHHHHHHHHHHHHHc----c-cCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---------------ChhHHHHH
Q 010837 262 IETARKALEVHCQLIKN----V-FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---------------NVFTWTSM 321 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~l 321 (499)
...+.-..+++.-.+. . -..-..|-..|...|...|.+.+..+++.++.+. -...|..=
T Consensus 119 -~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 119 -KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred -hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 3333333333332221 1 1111223456778888888888888888877531 12456667
Q ss_pred HHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----cccCcHHHHHHHHHHchHhcCC--CCC---hhHHH
Q 010837 322 IDGYGKNGNPNQALELFCMMQEC-CVQPNYVTFLGALSAC-----GHAGLVDKGREIFESMERDYSM--KPK---MEHYA 390 (499)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~--~p~---~~~~~ 390 (499)
|+.|....+-.+-..+|++...- ..-|.+.... .|+-| .+.|.+++|-.-|=++.+.+.- .|. .--|.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYL 276 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYL 276 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHH
Confidence 77787777767777777765432 2344444333 33333 4667888775433333322211 232 22355
Q ss_pred HHHHHHHhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010837 391 CMVDLLGRAGS----LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443 (499)
Q Consensus 391 ~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (499)
.|..++.+.|- ..+| +-.+..|.....+.|+.+|.. ++..+.++++..
T Consensus 277 VLANMLmkS~iNPFDsQEA----KPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 277 VLANMLMKSGINPFDSQEA----KPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHcCCCCCccccc----CCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 56666655441 1111 001113566677888888744 455555555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.54 E-value=5.3 Score=32.96 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV--TFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
+..+...|++.|+.++|.+.|.++.+....+... .+-.++......+++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445555555555555555555555543333322 23344445555555555555554444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.34 E-value=23 Score=37.87 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=21.3
Q ss_pred CCchhHHHHHHHHHHhCC--ChhHHHHHHHhcc
Q 010837 183 KADDVLYTALVDSYVKGG--KTSYARIVFDMML 213 (499)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 213 (499)
.|+ .....+|..|.+.+ .+++|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 454 45567888888887 6777777776665
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.32 E-value=5.5 Score=36.26 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=27.7
Q ss_pred HhCCChhHHHHHHHhccCC------ChHhHHHHHHHHHhCCCHHHHHHH
Q 010837 197 VKGGKTSYARIVFDMMLEK------NVICSTSMISGFMSQGFVEDAEEI 239 (499)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~ 239 (499)
....+.++|+..+.....+ -..++..+..+.++.|.+++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 3455666666666665443 134667777778888888877654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.97 E-value=20 Score=36.64 Aligned_cols=213 Identities=11% Similarity=0.013 Sum_probs=125.6
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHH----HhCC------------CCChHHHHHHHHHHHcCCChhHHHHHhccC
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHIT----KTGV------------KPNTNISIKLLILHLKCGALKYAGQMFDEL 106 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 106 (499)
.+....+.++.++...+.+-.-.-+++.+. ..+. .........-+..+.+...++-|..+-+.-
T Consensus 281 ~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~ 360 (933)
T KOG2114|consen 281 LSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ 360 (933)
T ss_pred cCccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 345556777777777776655444444433 3331 122334455677788888888888887764
Q ss_pred CCCChHH----HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCC
Q 010837 107 PQRTLSA----YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182 (499)
Q Consensus 107 ~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 182 (499)
.- +... .....+.+.+.|++++|..-|-+-... +.|. .++.-+ ........-..+++.+.+.|+
T Consensus 361 ~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf-----Ldaq~IknLt~YLe~L~~~gl 428 (933)
T KOG2114|consen 361 HL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF-----LDAQRIKNLTSYLEALHKKGL 428 (933)
T ss_pred CC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh-----cCHHHHHHHHHHHHHHHHccc
Confidence 43 2222 333344556789999998888776543 2332 234444 444445555566777777785
Q ss_pred CCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChH--hHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhc
Q 010837 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI--CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260 (499)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 260 (499)
. +...-..|+.+|.+.++.++-.++.+... .+.. -....+..+.+.+-.++|.-+-.+... .......++...
T Consensus 429 a-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ille~~-- 503 (933)
T KOG2114|consen 429 A-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILLEDL-- 503 (933)
T ss_pred c-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHHHHh--
Confidence 3 44456678999999999999888888776 3222 234455555566666666555544433 333333444333
Q ss_pred ChhhHHHHHHHHHH
Q 010837 261 SIETARKALEVHCQ 274 (499)
Q Consensus 261 ~~~~~~~a~~~~~~ 274 (499)
+++++|.+++..
T Consensus 504 --~ny~eAl~yi~s 515 (933)
T KOG2114|consen 504 --HNYEEALRYISS 515 (933)
T ss_pred --cCHHHHHHHHhc
Confidence 555566655543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.76 E-value=9.8 Score=33.13 Aligned_cols=177 Identities=10% Similarity=0.093 Sum_probs=93.6
Q ss_pred CChHHHHHHHHhcCC----CCh---hHHHHHHHHHHhCCChhHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHcccCc
Q 010837 298 GKIDDARRVFDHMQQ----KNV---FTWTSMIDGYGKNGNPNQALELFCMMQEC---CV--QPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 298 g~~~~a~~~~~~~~~----~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~ 365 (499)
...++|+.-|++..+ ... .....++....+.|++++.++.|.+|... .+ .-+..+.+.+++-...+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666665543 111 23344566677777777777777776432 11 1234455666665555555
Q ss_pred HHHHHHHHHHchHhc----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-------CCHHHHHHHHHH
Q 010837 366 VDKGREIFESMERDY----SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-------K-------PNSDVWAALLSS 427 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~-------~~~~~~~~l~~~ 427 (499)
.+.-..+|+.-.... +-..--.+-..|...|...+.+.+..++++++.. . .-...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 544444443322111 1111122335566777777777777777766543 0 113456666677
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH-----HhcCChHHHHH
Q 010837 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL-----AAAGKWDSVTE 474 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~ 474 (499)
|...++-+....++++.+.............+++-| .+.|+|++|..
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 777777777777777766533221122333333333 35677777653
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=12 Score=33.53 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=28.3
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCH----HHHHHHHHhc
Q 010837 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV----EDAEEIFRKT 243 (499)
Q Consensus 184 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~ 243 (499)
+|..+....+..+...|..+-...+...+...|...-...+.++.+.|+. +++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 44444444555555555433333333333334555555555555555542 3455555544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.50 E-value=3.1 Score=40.44 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=74.7
Q ss_pred HHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHH
Q 010837 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
....+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 645 elal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 3456778899888876654 4667899999999999999999999887665 4456666777777665555
Q ss_pred HHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 372 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
+-.... +.|. .|.-..+|...|+++++.+++.+-..
T Consensus 714 la~~~~-~~g~------~N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 714 LASLAK-KQGK------NNLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHHH-hhcc------cchHHHHHHHcCCHHHHHHHHHhcCc
Confidence 554444 3232 23344567788999999998876544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.61 E-value=2.5 Score=30.56 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-++.+.+-.- ..|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~--~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKK--EIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-T--THHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChH--HHHHHHHH
Confidence 4556666777777888888888899999999999999999988886655432 26666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.47 E-value=16 Score=33.06 Aligned_cols=48 Identities=10% Similarity=-0.023 Sum_probs=20.6
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHH
Q 010837 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375 (499)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 375 (499)
..|-+++|++.-++..+-+ +.|..........+...|+..++.+++.+
T Consensus 187 E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 3444444444444444322 22333334444444444444444444433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.44 E-value=0.77 Score=41.02 Aligned_cols=110 Identities=10% Similarity=0.035 Sum_probs=78.4
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCH
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDV 434 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 434 (499)
.-|.++|.+++|+..|.... .+.| +.+++..-..+|.+..++..|..-...... +.-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 56889999999999999887 6677 888888888899999998887776666554 22234555555555666788
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHH
Q 010837 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475 (499)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (499)
.+|.+-++..++..|.. +.|-..+.+.....++.-+
T Consensus 182 ~EAKkD~E~vL~LEP~~-----~ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN-----IELKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHhHHHHHhhCccc-----HHHHHHHHHhcchHhhhHH
Confidence 88888888888877764 4455555555555554433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.27 E-value=13 Score=31.67 Aligned_cols=183 Identities=20% Similarity=0.137 Sum_probs=132.1
Q ss_pred CChHHHHHHHHhcCCC-----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHcccCcHHHHHH
Q 010837 298 GKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQEC-CVQPNYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 298 g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
+....+...+...... ....+......+...+++..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555444432 2466777788888999999999988887752 234555667777777778888999999
Q ss_pred HHHHchHhcCCCCCh-hHHHHHHH-HHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010837 372 IFESMERDYSMKPKM-EHYACMVD-LLGRAGSLEQALKFVLEMPE-KP----NSDVWAALLSSCRLHDDVEMANIAANEI 444 (499)
Q Consensus 372 ~~~~~~~~~~~~p~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (499)
.+..... ..++. ........ .+...|+++.|...+.+... .| ....+......+...++.+.+...+...
T Consensus 117 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALA---LDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHc---CCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9998872 22322 22333333 78899999999999998754 22 2334444445567789999999999999
Q ss_pred HhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
....+......+..+...+...++++.|...+.......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 988877227889999999999999999999998877644
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.24 E-value=9 Score=30.13 Aligned_cols=48 Identities=13% Similarity=0.313 Sum_probs=24.5
Q ss_pred cCcHHHHHHHHHHchHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 010837 363 AGLVDKGREIFESMERDYSMKPK---MEHYACMVDLLGRAGSLEQALKFVLEMPEK 415 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (499)
.++++++..+++.+. -+.|+ ..++.. ..+...|+|++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALr---vLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALR---VLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHH---HhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 455666666665555 33442 222222 2244556666666666666653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.22 E-value=30 Score=35.85 Aligned_cols=193 Identities=12% Similarity=0.068 Sum_probs=102.6
Q ss_pred HHhcCChHHHHHHHHhcCC----CCh-------hHHHHHHH-HHHhCCChhHHHHHHHHHHHcC----CCCCHHHHHHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQ----KNV-------FTWTSMID-GYGKNGNPNQALELFCMMQECC----VQPNYVTFLGAL 357 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~----~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~ll 357 (499)
.....++++|..++.++.. ++. ..|+.+-. .....|++++|+++-+.....= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456788888888876542 221 23444432 2345688888888887766541 122344566666
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCCChhH---HHHHH--HHHHhcCC--HHHHHHHHHhCCC-----C----CCHHHH
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKPKMEH---YACMV--DLLGRAGS--LEQALKFVLEMPE-----K----PNSDVW 421 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~--~~~~~~~~--~~~a~~~~~~~~~-----~----~~~~~~ 421 (499)
.+..-.|++++|..+.+...+. .-.-+... +..+. ..+...|. +++....|..... + +-..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7777788899888877766532 11122222 22222 22445562 2223333332222 1 223445
Q ss_pred HHHHHHHhhc-CCHHHHHHHHHHHHhcCCCCCCc--hhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 422 AALLSSCRLH-DDVEMANIAANEIFKLNANDRPG--AYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 422 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
..++.++.+. +...++..-++-.....+.+-.. .+..|+..+...|+.++|...++++......+.
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 5555555441 22222222233222233333111 223677788888999999988888877665554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=7.5 Score=36.81 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=40.9
Q ss_pred cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHhhcCCHHHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK--PNSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
...|+++.+.+.+..... -+.....+..++++...+.|++++|..+-.-|... .+..............|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 344555555555554431 12223334455555555555555555555544431 22222222222333444555555
Q ss_pred HHHHHHHhcCCCC
Q 010837 439 IAANEIFKLNAND 451 (499)
Q Consensus 439 ~~~~~~~~~~~~~ 451 (499)
-.|++....+++.
T Consensus 412 ~~wk~~~~~~~~~ 424 (831)
T PRK15180 412 HYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccCChh
Confidence 5555555544443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.92 E-value=20 Score=33.43 Aligned_cols=65 Identities=15% Similarity=0.067 Sum_probs=42.7
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHcccCcHHHHHHHHHHchH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP---NYVTFLGALSACGHAGLVDKGREIFESMER 378 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (499)
...+|..+...+.+.|+++.|...+.++...+... .......-...+-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777788888888888888888877643211 223333344555566777888887777764
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.91 E-value=14 Score=36.14 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=33.3
Q ss_pred ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 441 (499)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+....+-
T Consensus 649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc------hhhhhhhhhhcCChhHHHHHH
Confidence 4455555555543332 123355555655566666666655555443 333444444444444333333
Q ss_pred HHH
Q 010837 442 NEI 444 (499)
Q Consensus 442 ~~~ 444 (499)
...
T Consensus 716 ~~~ 718 (794)
T KOG0276|consen 716 SLA 718 (794)
T ss_pred HHH
Confidence 333
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.82 E-value=3.2 Score=29.70 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
.-++.+-++.+....+.|++....+.++||-+.+++..|.++++-++.+.+. +...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3355666666666777888888888888888888888888888877755443 3345555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.32 E-value=25 Score=33.88 Aligned_cols=175 Identities=13% Similarity=0.110 Sum_probs=101.6
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 360 (499)
|.....+++..+...-...-++.+..+|.. .+-..|..++++|..+ ..+.-..+|+++.+..+ .|.+.-..|..-|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 444555666667666666666666666654 4556677777777777 44666777777777532 2333333444444
Q ss_pred cccCcHHHHHHHHHHchHhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHhh
Q 010837 361 GHAGLVDKGREIFESMERDYSMKPK------MEHYACMVDLLGRAGSLEQALKFVLEMPEK----PNSDVWAALLSSCRL 430 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~ 430 (499)
.+ ++.+.+..+|..+.. .+-|. ..+|..|... -..+.|....+..++..+ .-...+.-+-.-|..
T Consensus 143 Ek-ik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 143 EK-IKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-hchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 44 677777777777662 22231 1244444431 134555666655555442 223344445556667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 431 HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
..++++|++++..+++.+-.. ..+-..++..+..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~-~~ar~~~i~~lRd 251 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKD-VWARKEIIENLRD 251 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchh-hhHHHHHHHHHHH
Confidence 777888888888777766655 5555555555443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.10 E-value=4.6 Score=31.69 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=59.5
Q ss_pred ChhHHHHHHHHH---HhcCCHHHHHHHHHhCCC-CCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhH
Q 010837 385 KMEHYACMVDLL---GRAGSLEQALKFVLEMPE-KPN---SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457 (499)
Q Consensus 385 ~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (499)
+..+.+.|++.. ...++.+++..++..+.- +|+ ..++... .+...|++++|.++|++..+.++.. +..--
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kA 82 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAP-PYGKA 82 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCc-hHHHH
Confidence 334555666554 357888999888887765 343 3444433 4678899999999999998877654 33333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
.+..++...|+. .=...-+.+.+.|-.++
T Consensus 83 L~A~CL~al~Dp-~Wr~~A~~~le~~~~~~ 111 (153)
T TIGR02561 83 LLALCLNAKGDA-EWHVHADEVLARDADAD 111 (153)
T ss_pred HHHHHHHhcCCh-HHHHHHHHHHHhCCCHh
Confidence 344444455543 22233344445554444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.09 E-value=3 Score=37.45 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=54.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcC
Q 010837 322 IDGYGKNGNPNQALELFCMMQECCVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400 (499)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 400 (499)
..-|.+.|.+++|++.|..-.. +.| |.+++..-..+|.+.+.+..|+.--.... .+ -...+.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai---aL------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI---AL------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH---Hh------hHHHHHHHHHHH
Confidence 4568899999999999998776 456 88899888889999999888777665555 11 123455565554
Q ss_pred CHHHHHHHHHh
Q 010837 401 SLEQALKFVLE 411 (499)
Q Consensus 401 ~~~~a~~~~~~ 411 (499)
.-..++....+
T Consensus 173 ~AR~~Lg~~~E 183 (536)
T KOG4648|consen 173 QARESLGNNME 183 (536)
T ss_pred HHHHHHhhHHH
Confidence 44444433333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.3 Score=24.39 Aligned_cols=30 Identities=20% Similarity=0.070 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (499)
+|..+...|...|++++|.+.|++.++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555555555555555555443
|
... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.04 E-value=13 Score=30.17 Aligned_cols=120 Identities=14% Similarity=0.149 Sum_probs=79.9
Q ss_pred HHhcCChHHHHHHHHhcCCCChhHHHHHH-----HHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHcccCc
Q 010837 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMI-----DGYGKNGNPNQALELFCMMQECCVQPNYV-TFLGA--LSACGHAGL 365 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l--l~~~~~~~~ 365 (499)
+++.+..++|+.-|..+.+.+.-.|-.|. ......|+...|...|.+.-.....|-.. -...| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 56778888888888888876655555443 34567888888999998887654344332 12222 223567788
Q ss_pred HHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
++......+-+..+ +-+.....-..|.-+-.+.|++.+|.++|..+..
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88877777766522 3222344456677777788999999998888765
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.96 E-value=1.3 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQE 343 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (499)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555566666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=87.86 E-value=0.85 Score=23.56 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=14.5
Q ss_pred hhHHHHHHHHhcCChHHHHHHHH
Q 010837 455 AYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
....+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34556666666777776666654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.82 E-value=0.98 Score=24.88 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=24.8
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
..+..++.+|.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.68 E-value=1.2 Score=25.96 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=19.3
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.+++.|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777776653
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.61 E-value=2.8 Score=37.18 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=64.6
Q ss_pred ccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-CCh-----hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 010837 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-KNV-----FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352 (499)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 352 (499)
|......+...++..-....+++++...+-++.+ ++. .+-.+.++.+. .-+.++++.++..=...|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 4444455555555555556677777776666553 211 11112223222 3366788888888888888888888
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHh
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERD 379 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 379 (499)
++.+++.+.+.+++..|.++.-.|..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888877776643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.54 E-value=5.5 Score=31.83 Aligned_cols=100 Identities=17% Similarity=0.043 Sum_probs=61.8
Q ss_pred ChhHHHHHHHHH---HhcCCHHHHHHHHHhCCC-CCCHHHHH-HHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHH
Q 010837 385 KMEHYACMVDLL---GRAGSLEQALKFVLEMPE-KPNSDVWA-ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459 (499)
Q Consensus 385 ~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (499)
+..+.+.|+..+ .+.++.+++..++..+.- +|...... .-...+...|++.+|+.+|+++.+..+.. +. -..|
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~-~kAL 83 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PY-AKAL 83 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hH-HHHH
Confidence 334556666654 467899999999988766 45443322 22344778999999999999987776554 33 3344
Q ss_pred HHHHH-hcCChHHHHHHHHHHHhCCCccC
Q 010837 460 SNTLA-AAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 460 ~~~~~-~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
+..|. ..|+ ..=...-+++.+.+-.|+
T Consensus 84 lA~CL~~~~D-~~Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 84 LALCLYALGD-PSWRRYADEVLESGADPD 111 (160)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHhcCCChH
Confidence 44444 4444 333344455666665554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.20 E-value=1.2 Score=24.87 Aligned_cols=24 Identities=25% Similarity=0.086 Sum_probs=12.8
Q ss_pred CCChHHHHHHHHHHHcCCChhHHH
Q 010837 77 KPNTNISIKLLILHLKCGALKYAG 100 (499)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~A~ 100 (499)
+-+...|+.+..+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555555555555555555553
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.18 E-value=1.4 Score=23.92 Aligned_cols=24 Identities=13% Similarity=-0.085 Sum_probs=10.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
..++.+.|++++|.+.|+++++..
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHccCHHHHHHHHHHHHHHC
Confidence 333444444444444444444433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.91 E-value=1.8 Score=25.13 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 418 SDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
..+++.|...|...|++++|..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677788888888888888888887765
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.52 E-value=20 Score=30.74 Aligned_cols=52 Identities=10% Similarity=0.065 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhCCC-----CCCHHH---HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 400 GSLEQALKFVLEMPE-----KPNSDV---WAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 400 ~~~~~a~~~~~~~~~-----~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.++++|+..|+..-+ +.+... +.-+..--...+++.+|+.+|++.......+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455666666655443 112222 2222333456789999999999998877776
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.42 E-value=1.4 Score=26.31 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=20.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 458 ALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.|..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 56778888888888888888877544
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.34 E-value=13 Score=30.86 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=65.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHH
Q 010837 322 IDGYGKNGNPNQALELFCMMQECCVQPNY-----VTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDL 395 (499)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 395 (499)
..-+..+|++++|..-|.+..+. +++.. ..|..-..++.+.+.++.|+.--...+ .+.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHH
Confidence 44578899999999999999886 33322 234445567888899999988877777 44552 2223333557
Q ss_pred HHhcCCHHHHHHHHHhCCC-CCC
Q 010837 396 LGRAGSLEQALKFVLEMPE-KPN 417 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~-~~~ 417 (499)
|.+..++++|++-|+++.+ .|.
T Consensus 178 yek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcc
Confidence 8888999999999998887 344
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.28 E-value=24 Score=31.45 Aligned_cols=134 Identities=12% Similarity=0.099 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCC----hhHHHHHHHHHHhCCChhHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN----VFTWTSMIDGYGKNGNPNQALELF 338 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 338 (499)
++..++...+......... +...-..+..+|...|+.+.|..++..+.... ......-|..+.+.....+...+-
T Consensus 148 e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred cchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4444555555555444322 23344456677777777777777777766421 111122233444444444444443
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcC
Q 010837 339 CMMQECCVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400 (499)
Q Consensus 339 ~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 400 (499)
.+.-. .| |...-..+...+...|+.+.|.+.+=.+.++..-.-|...-..|+..+.-.|
T Consensus 227 ~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 227 RRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33332 23 4444444555566666666665554444433111123334444555444433
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.07 E-value=1.3 Score=26.51 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=19.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
.|..+|...|+.+.|.+++++++..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35677788888888888888777544
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=85.82 E-value=31 Score=32.35 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=40.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH-hcCChHHHHHHHHHHHh
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA-AAGKWDSVTELREKMKL 481 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 481 (499)
.+..+.+.|-+..|.++.+-+...+|..|+......|..|+ +.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34556777778888888888878777755666666777664 66777666666666544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.59 E-value=81 Score=36.94 Aligned_cols=161 Identities=8% Similarity=-0.050 Sum_probs=90.1
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCC--CCChHHHHHHHHHHHcCCChhHHHHHhcc-CCCCChHHHHHHHHHHHhCCC
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGV--KPNTNISIKLLILHLKCGALKYAGQMFDE-LPQRTLSAYNYMIAGYLKNGQ 126 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 126 (499)
.+..+--+.+.+..|...++.-..... .-....+-.+...|+.-++.|...-+... ...++.. .-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~---~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLY---QQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHH---HHHHHHHhhcc
Confidence 455566678888888888887311110 11223344444588888888888777763 3333332 23444566799
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhH-HHHHHHHHHhCCChhHH
Q 010837 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL-YTALVDSYVKGGKTSYA 205 (499)
Q Consensus 127 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A 205 (499)
++.|...|+.+.+.+ ++...+++-++... ...+.........+..... ..+.... ++.=+.+-.+.++++..
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sm-----l~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSM-----LAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhh-----hcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 999999999998863 22355666565554 3444444443332222211 1222222 22333444677788777
Q ss_pred HHHHHhccCCChHhHHHH
Q 010837 206 RIVFDMMLEKNVICSTSM 223 (499)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l 223 (499)
..... ..+..+|...
T Consensus 1538 e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1538 ESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred hhhhh---cccccchhHH
Confidence 76665 4445555444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.58 E-value=1.5 Score=34.69 Aligned_cols=80 Identities=13% Similarity=0.005 Sum_probs=56.5
Q ss_pred CCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHH
Q 010837 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
...+.......+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++.-++.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~ 94 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYS 94 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHH
Confidence 55666777777788877766667788889999999999888888888774332 334556677777777777777777
Q ss_pred hcC
Q 010837 242 KTV 244 (499)
Q Consensus 242 ~~~ 244 (499)
++.
T Consensus 95 ~~~ 97 (143)
T PF00637_consen 95 KLG 97 (143)
T ss_dssp CCT
T ss_pred Hcc
Confidence 653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.47 E-value=2.2 Score=23.46 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=25.2
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678899999999999999999998876
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.27 E-value=40 Score=33.18 Aligned_cols=340 Identities=12% Similarity=0.078 Sum_probs=169.0
Q ss_pred HHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHc-CCC-CchhHHHHHHHHHH
Q 010837 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC-DVK-ADDVLYTALVDSYV 197 (499)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~ 197 (499)
.=.+.|..+.+.++|++-.+ |++.+...|...+..+. ...++.+.....|+..... |.. .+...|...|..-.
T Consensus 88 ~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~----n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en 162 (577)
T KOG1258|consen 88 YEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLK----NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFEN 162 (577)
T ss_pred HHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHh
Confidence 33445555666666665554 24444444444443332 3444444455555544432 222 23345666676667
Q ss_pred hCCChhHHHHHHHhccCCChHhHHHHHHHHH---hC------CCHHHHHHHHHhcCC--------CChhhHHHHHHHHhc
Q 010837 198 KGGKTSYARIVFDMMLEKNVICSTSMISGFM---SQ------GFVEDAEEIFRKTVE--------KDIVVYNAMIEGYSI 260 (499)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~~------g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~ 260 (499)
.++++.....+++++.+-....++....-|. +. ...+++.++-..... +........+.....
T Consensus 163 ~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~ 242 (577)
T KOG1258|consen 163 GQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTD 242 (577)
T ss_pred ccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccC
Confidence 7888888888888887654444444333322 22 112222222111110 111122222222222
Q ss_pred ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----------CChhHHHHHHHHHHhCC
Q 010837 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----------KNVFTWTSMIDGYGKNG 329 (499)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g 329 (499)
..+..+.+.......... --.++-..-........|+.-.+ .+...|...+.--...|
T Consensus 243 ~s~~l~~~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g 311 (577)
T KOG1258|consen 243 PSKSLTEEKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLG 311 (577)
T ss_pred ccchhhHHHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcc
Confidence 222222222222211111 01112222333334444444332 25568888888889999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCC--CChhHHHHHHHHHHhcCCHHHHHH
Q 010837 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK--PKMEHYACMVDLLGRAGSLEQALK 407 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~ 407 (499)
+.+.+.-+|++...-- ..=...|-..+.-....|+.+-|..++.... +.-++ |......+.+ .-..|+++.|..
T Consensus 312 ~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~-~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~ 387 (577)
T KOG1258|consen 312 DFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARAC-KIHVKKTPIIHLLEARF--EESNGNFDDAKV 387 (577)
T ss_pred cHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhh-hhcCCCCcHHHHHHHHH--HHhhccHHHHHH
Confidence 9999999999876421 1111223333333344489998888887766 32332 2233333322 234689999999
Q ss_pred HHHhCCCC-CCHH-HHHHHHHHHhhcCCHHHHHH---HHHHHHhcCCCCCCchhHHHHHHH-----HhcCChHHHHHHHH
Q 010837 408 FVLEMPEK-PNSD-VWAALLSSCRLHDDVEMANI---AANEIFKLNANDRPGAYVALSNTL-----AAAGKWDSVTELRE 477 (499)
Q Consensus 408 ~~~~~~~~-~~~~-~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~ 477 (499)
+++.+.+. |+.. .-..-+....+.|+.+.+.. ++.... .+... ..+...+.--+ .-.++.+.|..++.
T Consensus 388 ~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~-~~~~~-~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~ 465 (577)
T KOG1258|consen 388 ILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIY-EGKEN-NGILEKLYVKFARLRYKIREDADLARIILL 465 (577)
T ss_pred HHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc-ccccC-cchhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999873 4332 22223344567788877773 332222 22222 23333322222 23567889999998
Q ss_pred HHHh
Q 010837 478 KMKL 481 (499)
Q Consensus 478 ~~~~ 481 (499)
.+.+
T Consensus 466 ~~~~ 469 (577)
T KOG1258|consen 466 EAND 469 (577)
T ss_pred Hhhh
Confidence 8765
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.08 E-value=1.3 Score=24.06 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.4
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
++..++.++.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998864
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.67 E-value=25 Score=31.27 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
++.....|..+|.+.+|..+-++....+ +.+...+-.++..+...|+--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444456666777777777776666542 4455566666677777776555555554443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.91 E-value=8.1 Score=32.21 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=48.6
Q ss_pred HHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC---CCCCCchhHHHHHHHHhcCChH
Q 010837 396 LGRAGSLEQALKFVLEMPEKP--NSDVWAALLSSCRLHDDVEMANIAANEIFKLN---ANDRPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~ 470 (499)
..+.|+ +.|.+.|-++...| +.......+..|....|.++++.++-++++.. ..+++..+..|+..|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 334444 56666666666532 22233333344455678888888888877632 2456788888888888888887
Q ss_pred HHH
Q 010837 471 SVT 473 (499)
Q Consensus 471 ~A~ 473 (499)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 763
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.50 E-value=28 Score=29.89 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=30.0
Q ss_pred HhcCCHHHHHHHHHhCCC---CCCHHHHHH---HHH--HH-hhcCCHHHHHHHHHHHHhcCCCC
Q 010837 397 GRAGSLEQALKFVLEMPE---KPNSDVWAA---LLS--SC-RLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~---~~~~~~~~~---l~~--~~-~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
...+++.+|+++|+++.. ..+..-|.. ++. .| .-..|.-.+...+++..+..|..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 456778888888877654 111111111 111 12 22356666777777777777766
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=83.22 E-value=21 Score=28.17 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=55.0
Q ss_pred HHHhCCCCCh--HHHHHHHHHHHcCCChhHHHHHhccCCC---------CChHHHHHHHHHHHhCCC-hhhHHHHHHHHH
Q 010837 71 ITKTGVKPNT--NISIKLLILHLKCGALKYAGQMFDELPQ---------RTLSAYNYMIAGYLKNGQ-VEESLSLVRKLV 138 (499)
Q Consensus 71 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 138 (499)
|.+.+..++. ...|.++......+++.....+++.+.. .+...|+.++.+.++... --.+..+|..|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 4444555544 3347777777777788877777777642 244467777777755544 344566777777
Q ss_pred HcCCCCChhhHHHHhhhc
Q 010837 139 SSGERPDGYTFSMILKAS 156 (499)
Q Consensus 139 ~~g~~p~~~~~~~ll~~~ 156 (499)
+.+.+++..-|..++.++
T Consensus 108 ~~~~~~t~~dy~~li~~~ 125 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAA 125 (145)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 666777777777777775
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.22 E-value=4.2 Score=29.11 Aligned_cols=60 Identities=8% Similarity=0.127 Sum_probs=43.4
Q ss_pred ChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHH
Q 010837 60 TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIA 119 (499)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~ 119 (499)
+.-++.+-++.+...++-|++.+..+.+++|.|.+++..|.++|+.++. .+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 5556677777777778888888888888888888888888888886652 12334555443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.66 E-value=4.8 Score=35.85 Aligned_cols=101 Identities=9% Similarity=0.028 Sum_probs=49.9
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHH
Q 010837 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS--MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSD 419 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~ 419 (499)
|......+...++..-....+++.++.++-.+..... ..|+...+ ..++ ++-.-+.++++.++..=.. =||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 4444555555555555555666666666655542100 01111111 1122 2223344555555544333 26666
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
+++.+++.+.+.+++.+|.++.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6666666666666666666665555543
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=82.37 E-value=35 Score=30.26 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=21.2
Q ss_pred ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCCh
Q 010837 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248 (499)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 248 (499)
+......+...|.+.|++.+|..-|-...+++.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~ 121 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSA 121 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhH
Confidence 566777778888888888888877755433333
|
; PDB: 3LKU_E 2WPV_G. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.12 E-value=38 Score=30.46 Aligned_cols=61 Identities=8% Similarity=0.014 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCCh----hhHHHHHHHH
Q 010837 77 KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV----EESLSLVRKL 137 (499)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m 137 (499)
.+|..+....+.++...|..+-...+.+-+..+|...-...+.++...|+. .++..++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 344445555555555555433322222222334444444455555555542 2344555444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.90 E-value=26 Score=28.45 Aligned_cols=134 Identities=10% Similarity=0.140 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhh
Q 010837 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250 (499)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 250 (499)
.++.+.+.+.+++|+...+..+++.+.+.|++.....++.--.-+|. ..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DS-------------------------------k~ 62 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDS-------------------------------KP 62 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCc-------------------------------HH
Confidence 44555556667777777777777777777776665555543322222 11
Q ss_pred HHHHHHHHh-cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCC
Q 010837 251 YNAMIEGYS-ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329 (499)
Q Consensus 251 ~~~ll~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 329 (499)
....+-.+. ....-..-+.+++.++.. .+..+++.+...|++-+|.++.+....-+......++++-.+.+
T Consensus 63 lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~ 134 (167)
T PF07035_consen 63 LACQLLSLGNQYPPAYQLGLDMLKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSN 134 (167)
T ss_pred HHHHHHHhHccChHHHHHHHHHHHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcC
Confidence 111111111 111111223333333221 13345666777788888887777654444444455566666666
Q ss_pred ChhHHHHHHHHHHH
Q 010837 330 NPNQALELFCMMQE 343 (499)
Q Consensus 330 ~~~~a~~~~~~m~~ 343 (499)
|...=..+++-..+
T Consensus 135 D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 135 DDQLFYAVFRFFEE 148 (167)
T ss_pred CHHHHHHHHHHHHH
Confidence 65555555554444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.82 E-value=61 Score=32.62 Aligned_cols=14 Identities=14% Similarity=-0.052 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHcc
Q 010837 266 RKALEVHCQLIKNV 279 (499)
Q Consensus 266 ~~a~~~~~~~~~~~ 279 (499)
..+..+++...+.|
T Consensus 229 ~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 229 SEAFKYYREAAKLG 242 (552)
T ss_pred hHHHHHHHHHHhhc
Confidence 34555555555544
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=81.75 E-value=37 Score=30.11 Aligned_cols=133 Identities=15% Similarity=0.119 Sum_probs=60.5
Q ss_pred cCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHH----HHHHHcCCCCChhhHHHHhhhccccccCCcCcc
Q 010837 92 KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV----RKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167 (499)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 167 (499)
+++++++|.+++-. =...+.+.|+...|.++- +-+.+.++++|......++..+...........
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665433 122344455554443333 223334555555544444443321111222223
Q ss_pred hhHHHHHHHHHHcCCC--CchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHH
Q 010837 168 NLGRMVHAQILKCDVK--ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236 (499)
Q Consensus 168 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 236 (499)
........+- +.|-. -++.....+...|.+.|++.+|..-|-.-..++...+..++......|...++
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~ 140 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA 140 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch
Confidence 3333344444 33322 36678888999999999999999877655544444443344444444444433
|
; PDB: 3LKU_E 2WPV_G. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.94 E-value=40 Score=30.00 Aligned_cols=60 Identities=13% Similarity=0.032 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+++.....|..+|.+.+|.++.++.+..++-. ...+..|++.|...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~-e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLS-EQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455577899999999999999999999877 8889999999999999777777666654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.71 E-value=21 Score=36.33 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=11.6
Q ss_pred HHhCCChhHHHHHHHHHH
Q 010837 325 YGKNGNPNQALELFCMMQ 342 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~ 342 (499)
+...|+++.|++.++++.
T Consensus 515 ~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 346788888877766654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.03 E-value=3.6 Score=29.78 Aligned_cols=46 Identities=9% Similarity=0.054 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC
Q 010837 62 FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107 (499)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 107 (499)
-+..+-++.+....+-|++.+..+.+++|.|.+++..|.++|+.++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555666666677777777777777777777777777777665
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.1 bits (149), Expect = 3e-10
Identities = 19/191 (9%), Positives = 63/191 (32%), Gaps = 7/191 (3%)
Query: 247 DIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
A + ++ + A L VH + + + +A++ +A+ G +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 305 RVFDHMQQK----NVFTWTSMIDGYGKNGNPNQALE-LFCMMQECCVQPNYVTFLGALSA 359
V ++ ++ ++ + + G+ +E M + ++ + LS
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245
Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
A ++ ++ + + P + + D+ + G + + + +
Sbjct: 246 EDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
Query: 420 VWAALLSSCRL 430
+ + R+
Sbjct: 306 KQLHMELASRV 316
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.8 bits (130), Expect = 4e-08
Identities = 29/312 (9%), Positives = 83/312 (26%), Gaps = 26/312 (8%)
Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-------NV 217
L ++ + Q + + A + + A + + + +
Sbjct: 106 LSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL 165
Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHC 273
+++ G+ QG ++ + + D++ Y A ++ + A
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225
Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM----QQKNVFTWTSMIDGYGKNG 329
Q+ + + L+ + + +V Q + ++
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
+L ++ + + + + K
Sbjct: 286 GRVSYPKLHLPLKTLQCLFEKQLHME----------LASRVCVVSVEKPTLPSKEVKHAR 335
Query: 390 ACMVDLLGR-AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
+ L + +L +AL+ E+ + +L L D+ E+ + + L
Sbjct: 336 KTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALP 395
Query: 449 ANDRPGAYVALS 460
A +A
Sbjct: 396 AQGESFTTLARE 407
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.1 bits (110), Expect = 1e-05
Identities = 28/255 (10%), Positives = 69/255 (27%), Gaps = 11/255 (4%)
Query: 24 PPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNIS 83
Q L LQ + ++ +
Sbjct: 71 LSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRL 130
Query: 84 IKLLILHLKCGALKYAGQMFDELPQR-------TLSAYNYMIAGYLKNGQVEESLSLVRK 136
+ L L A + + TL YN ++ G+ + G +E + ++
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
+ +G PD +++ L+ R + + R + Q+ + +K + L+
Sbjct: 191 VKDAGLTPDLLSYAAALQC--MGRQD-QDAGTIERCLE-QMSQEGLKLQALFTAVLLSEE 246
Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
+ V + S + + +D + K + +
Sbjct: 247 DRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
Query: 257 GYSISIETARKALEV 271
+ + + + V
Sbjct: 307 QLHMELASRVCVVSV 321
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 5e-10
Identities = 65/501 (12%), Positives = 136/501 (27%), Gaps = 170/501 (33%)
Query: 2 PNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTP 61
P++ + +R Y NQ F ++S L AL
Sbjct: 105 PSMMTRM---YIEQRDRLYN---DNQVFAK-----YNVSRLQPYLKLRQALLE------- 146
Query: 62 FYGLKIHAHITKTGVKPNTNISIKLLILH--LKCG--ALKYAGQMFDELPQRTLSAYNYM 117
++P N+ ++ L G + A + + ++
Sbjct: 147 --------------LRPAKNV-----LIDGVLGSGKTWV--ALDVCLS--YKVQCKMDFK 183
Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR----SNVPLPRN----- 168
I +L +++ L + + R SN+ L +
Sbjct: 184 IF-WLNLKNCNSPETVLEMLQ---------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 169 LGRMVHAQ-------ILKCDVKADDVLYTALVDSYVKGGK---TSYARIVFDMMLEKNVI 218
L R++ ++ +L +V +++ K T+ + V D +
Sbjct: 234 LRRLLKSKPYENCLLVL------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT- 286
Query: 219 CSTSMISGFMSQGFVED-AEEIFRKTVEKDI-------------VVYNAMIEGYSISIET 264
T + S D + + K ++ + ++I SI
Sbjct: 287 --THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SII-AESIRDGL 341
Query: 265 AR---------KALEVHCQLIKN------------------VFFEDVKLGSALVDMYAKC 297
A L +I++ VF + + L+ +
Sbjct: 342 ATWDNWKHVNCDKLT---TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN---PNQALELFCMMQE----------- 343
D V + + + S+++ K P+ LEL ++
Sbjct: 399 VIKSDVMVVVNKLHKY------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 344 ----CCVQP---------NYV-TFLGA-LSACGHAGLVDKGREIFESMERDYS-MKPKME 387
Y + +G L H + R +F D+ ++ K+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----LDFRFLEQKIR 508
Query: 388 HYACMVDLLGRAGSLEQALKF 408
H + + G + Q LKF
Sbjct: 509 HDSTAWNASGSILNTLQQLKF 529
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 50/364 (13%), Positives = 107/364 (29%), Gaps = 122/364 (33%)
Query: 187 VLYTALVDSYVK-GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED--------AE 237
+L +D + S +F +L K M+ F+ + +
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 238 EIFRKTVEKDIVVY--------NAMIEGYSIS----IETARKALEVHCQL--IKNVFFED 283
E + ++ + + N + Y++S R+AL +L KNV +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL---LELRPAKNVLID- 156
Query: 284 VKLGSALVDMYAKCGK----IDDARRVFDHMQQK----NVFTWTSMIDGYGKNGNPNQAL 335
G + GK +D + Q +F W ++ N N
Sbjct: 157 ---G-----V-LGSGKTWVALDVCL---SYKVQCKMDFKIF-WLNL-------KNCNSPE 196
Query: 336 ELFCMMQECCVQ--PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
+ M+Q+ Q PN+ + D+S K+
Sbjct: 197 TVLEMLQKLLYQIDPNWTS------------------------RSDHSSNIKL------- 225
Query: 394 DLLGRAGSLEQALKFVLEMPEKPNS-----DVW-----AALLSSCRL---HDDVEMAN-I 439
R S++ L+ +L+ N +V A SC++ ++ + +
Sbjct: 226 ----RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 440 AANEIFKLNANDRPGAYVALSNTLAAAGKW--DSVTELREKMKLRG---------VLKDT 488
+A ++ + + K+ +L ++ ++D
Sbjct: 282 SAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 489 GCSW 492
+W
Sbjct: 341 LATW 344
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 50/335 (14%), Positives = 97/335 (28%), Gaps = 88/335 (26%)
Query: 4 LSRIRS--SVFSSTHNRHYTLVPPNQTFPPK-----LQNY-----DSLS------NPLTA 45
+R + S+ H +L + T P L Y L NP
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 46 TSLPSALQHYINSDTPF--YGLKIHAHITKTGVK------------------PNTNISIK 85
+ + +++ + + + I ++ + P+ +I
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 86 LLILHLKCGALKY-AGQMFDELPQRTLSA-----YNYMIAG-YLK-NGQVEESLSLVRKL 137
LL L + +K + ++L + +L I YL+ ++E +L R +
Sbjct: 391 LLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 138 VSSGERP-------------DGYTFSMI---LKASTCCRSNVPLPR---NLGRMVHAQIL 178
V P D Y +S I LK + R + +I
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKIR 508
Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS-----TSMISGFMSQGFV 233
DS S + + K IC +++ + F+
Sbjct: 509 H--------------DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD--FL 552
Query: 234 EDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA 268
EE + D++ M E +I E ++
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 26/190 (13%), Positives = 59/190 (31%), Gaps = 12/190 (6%)
Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
+ + + +A ++ + I + +++ L A D K + +++ +
Sbjct: 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID 354
Query: 318 WTSMIDGYGK----NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
T + Y K +F +E ++V AL + +IF
Sbjct: 355 PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414
Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV------LEMPEKPNSDVWAALLSS 427
E + Y P+ +D L +P + + ++WA L+
Sbjct: 415 ELGLKKYGDIPEY--VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472
Query: 428 CRLHDDVEMA 437
D+
Sbjct: 473 ESNIGDLASI 482
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 3e-05
Identities = 26/213 (12%), Positives = 62/213 (29%), Gaps = 20/213 (9%)
Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALE 336
+ KL + DM D+A +++ KN+ + + D +
Sbjct: 61 EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 120
Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-------KMEHY 389
++ + + ++ + A + GR IF+ D + ME+Y
Sbjct: 121 IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180
Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI---AANEIFK 446
+ E LK ++P + A + ++ +
Sbjct: 181 CSKDKSVAFK-IFELGLKKYGDIP-----EYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234
Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
L + + G S+ ++ ++
Sbjct: 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 1e-04
Identities = 37/237 (15%), Positives = 82/237 (34%), Gaps = 18/237 (7%)
Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE----KDIVVYNAMIEGYSISIETAR 266
LE++ ++ F ++A I+ + + K++++Y A + Y S
Sbjct: 58 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD-YEESRMKYE 116
Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG-- 324
K ++ +L+ + + + + I R +F ++ +
Sbjct: 117 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 176
Query: 325 --YGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
Y + + + A ++F +++ P Y L + H + R +FE + S
Sbjct: 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEY--VLAYIDYLSHLNEDNNTRVLFERVLTSGS 234
Query: 382 MKPK--MEHYACMVDLLGRAGSLEQALK----FVLEMPEKPNSDVWAALLSSCRLHD 432
+ P+ E +A + G L LK E+ A L+ + D
Sbjct: 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMD 291
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.31 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.23 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.19 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.15 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.11 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.06 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.04 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.03 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.02 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.99 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.97 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.97 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.97 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.96 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.92 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.92 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.9 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.9 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.87 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.83 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.82 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.82 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.79 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.73 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.72 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.71 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.69 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.68 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.68 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.68 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.67 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.64 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.64 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.63 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.62 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.61 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.56 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.56 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.54 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.49 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.46 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.46 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.46 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.44 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.44 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.43 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.43 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.41 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.41 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.41 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.39 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.39 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.35 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.34 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.32 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.29 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.28 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.26 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.24 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.23 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.19 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.19 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.17 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.17 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.15 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.15 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.15 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.07 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.06 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.06 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.05 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.93 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.87 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.85 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.84 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.82 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.82 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.82 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.77 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.74 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.74 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.67 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.65 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.64 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.62 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.5 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.46 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.25 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.2 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.14 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.13 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.13 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.94 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.91 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.88 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.85 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.85 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.76 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.69 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.62 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.57 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.5 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.48 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.4 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.38 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.36 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.09 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.99 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.96 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.89 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.85 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.8 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.35 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.3 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 95.03 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.99 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.98 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 94.5 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.07 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.0 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.54 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.08 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.07 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.02 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 92.45 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.44 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.18 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.18 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 91.79 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.67 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.48 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.99 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.75 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.47 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.28 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.87 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.84 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.51 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.24 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.94 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.66 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 85.72 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.56 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.37 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.8 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.72 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 80.8 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 80.35 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=323.73 Aligned_cols=436 Identities=12% Similarity=0.014 Sum_probs=379.5
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC--CCChHHHHHHHHH
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP--QRTLSAYNYMIAG 120 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~ 120 (499)
++...|+.++..+.+.|++++|..+|+++.+. .|+..++..++.+|.+.|++++|..+|+.+. .+++.+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 56778999999999999999999999999965 4788899999999999999999999999984 6789999999999
Q ss_pred HHhCCChhhHHHHHHHHHHc---------------CCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCc
Q 010837 121 YLKNGQVEESLSLVRKLVSS---------------GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 185 (499)
|.+.|++++|+++|+++... |..++..+|+.+..++ ...|+.+.|..+|+.+.+.+ +.+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~-p~~ 233 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY-----TNLSNFDRAKECYKEALMVD-AKC 233 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC-chh
Confidence 99999999999999953222 2344578999999999 89999999999999998875 223
Q ss_pred hhHHH--------------------------------------HHHHHHHhCCChhHHHHHHHhccC--CChHhHHHHHH
Q 010837 186 DVLYT--------------------------------------ALVDSYVKGGKTSYARIVFDMMLE--KNVICSTSMIS 225 (499)
Q Consensus 186 ~~~~~--------------------------------------~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~ 225 (499)
...+. .++..|.+.|++++|.++|+++.+ ++..+|+.++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 313 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 33332 335566788999999999999987 68999999999
Q ss_pred HHHhCCCHHHHHHHHHhcC--C-CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHH
Q 010837 226 GFMSQGFVEDAEEIFRKTV--E-KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~--~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (499)
.|.+.|++++|.++|+++. . .+..++..++..+... |+.++|..+++.+.+.. +.+..+++.++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES-GEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999987 3 3667888888888766 88999999999998654 3467899999999999999999
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHh
Q 010837 303 ARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379 (499)
Q Consensus 303 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 379 (499)
|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998864 467899999999999999999999999998864 557889999999999999999999999999843
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-------KPN--SDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 380 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
. +.+..+|+.++.+|.+.|++++|.++|+++.+ .|+ ..+|..++.+|.+.|++++|.+.++++.+.+|.
T Consensus 471 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 471 F--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp C--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred C--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 1 33788999999999999999999999998854 466 789999999999999999999999999999987
Q ss_pred CCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccccc
Q 010837 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVG 494 (499)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 494 (499)
. ..+|..++.+|.+.|++++|.+.++++.+. .|+....|..
T Consensus 549 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~ 589 (597)
T 2xpi_A 549 D-ANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDL 589 (597)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred C-hHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHH
Confidence 6 899999999999999999999999999884 4554444443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=297.49 Aligned_cols=408 Identities=11% Similarity=-0.044 Sum_probs=356.6
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCC------------
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR------------ 109 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------ 109 (499)
.|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++.+|.+.|++++|.++|+++...
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 457788899999999999999999999988644 678999999999999999999999999965443
Q ss_pred -------ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC-hhhHH-------------------------------
Q 010837 110 -------TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD-GYTFS------------------------------- 150 (499)
Q Consensus 110 -------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~------------------------------- 150 (499)
++.+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+.
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 47899999999999999999999999999864 33 22222
Q ss_pred -------HHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccC---CChHhH
Q 010837 151 -------MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE---KNVICS 220 (499)
Q Consensus 151 -------~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 220 (499)
.++..+ ...++.+.|..+++.+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|
T Consensus 270 ~~~~~~~~~~~~~-----~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 342 (597)
T 2xpi_A 270 FLRSLYMLKLNKT-----SHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVY 342 (597)
T ss_dssp HHHHHHHTTSCTT-----TTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTH
T ss_pred HHHHHHHHHHHHH-----cCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHH
Confidence 224445 6778889999999988765 58899999999999999999999999999964 367899
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhc
Q 010837 221 TSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297 (499)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (499)
+.++.++.+.|++++|.++++++. ..+..++..+...+.+. |+.++|..+|+.+.+... .+..+|+.++.+|.+.
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 343 PLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV-NKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIE 420 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 999999999999999999999886 34677888888888777 899999999999988543 3577999999999999
Q ss_pred CChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHH
Q 010837 298 GKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 298 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+
T Consensus 421 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998864 477899999999999999999999999998864 5578999999999999999999999999
Q ss_pred HchHhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 375 SMERDY---SMKPK--MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 375 ~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
++.+.. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+ +.+..+|..++.+|.+.|++++|.+.++++.+.
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 998432 56776 78999999999999999999999999876 458899999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHH
Q 010837 448 NANDRPGAYVALSNTLA 464 (499)
Q Consensus 448 ~~~~~~~~~~~l~~~~~ 464 (499)
.|.. ...+..+..+|.
T Consensus 580 ~p~~-~~~~~~l~~~~~ 595 (597)
T 2xpi_A 580 SPNE-IMASDLLKRALE 595 (597)
T ss_dssp CTTC-HHHHHHHHHTTC
T ss_pred CCCC-hHHHHHHHHHHh
Confidence 9987 788888877664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-27 Score=220.80 Aligned_cols=371 Identities=13% Similarity=0.107 Sum_probs=275.5
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHHHHhCCChh
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAGYLKNGQVE 128 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 128 (499)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++... +.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 455667889999999998888875 4556677777888888899999988887655 346678888999999999999
Q ss_pred hHHHHHHHHHHcCCCCC-hhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHH
Q 010837 129 ESLSLVRKLVSSGERPD-GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207 (499)
Q Consensus 129 ~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 207 (499)
+|++.|+++.+. .|+ ..+|..+..++ ...++.+.|...+..+.+.. +.+...+..+...+...|++++|.+
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAAL-----VAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHH-----HHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999988764 343 33455555555 55555666666666555543 2233344555555555566666666
Q ss_pred HHHhccC--C-ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCc
Q 010837 208 VFDMMLE--K-NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284 (499)
Q Consensus 208 ~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 284 (499)
.|+++.+ | +..+|..+...+...|++++|.+.|+ ++.+..+ .+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~--------------------------------~al~~~p-~~~ 203 (388)
T 1w3b_A 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE--------------------------------KAVTLDP-NFL 203 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH--------------------------------HHHHHCT-TCH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------------------------------HHHhcCC-CcH
Confidence 5555533 1 34455555555555555555555554 4444322 234
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 361 (499)
..+..+...+...|++++|...|++..+ | +..++..+...+.+.|++++|.+.|+++.+.+ +.+..++..+..++.
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 5667778888889999999999887754 3 57788889999999999999999999998853 345678889999999
Q ss_pred ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANI 439 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 439 (499)
+.|++++|...|+++.+. .+.+..++..+...+.+.|++++|.+.++++.+ +.+..++..+..++.+.|++++|.+
T Consensus 283 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999843 234778899999999999999999999999887 4467889999999999999999999
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 440 AANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
.++++++..|.. ...|..++..+.+.|+
T Consensus 361 ~~~~a~~~~p~~-~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 361 HYKEAIRISPTF-ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTCTTC-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCCCC-HHHHHhHHHHHHHccC
Confidence 999999988877 8888888888877664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-27 Score=220.93 Aligned_cols=358 Identities=13% Similarity=0.086 Sum_probs=283.1
Q ss_pred HHHHhCCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010837 119 AGYLKNGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197 (499)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (499)
..+.+.|++++|++.++++.+. .|+.. .+..+...+ ...++.+.+...++...+.. +.+..+|..+...|.
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIH-----FQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH
Confidence 3445566666666666666554 33333 233333333 45556666666666655543 556677888888888
Q ss_pred hCCChhHHHHHHHhccC--C-ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHH
Q 010837 198 KGGKTSYARIVFDMMLE--K-NVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVH 272 (499)
Q Consensus 198 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 272 (499)
+.|++++|++.|+++.+ | +..+|..+..++.+.|++++|.+.|+++. .|+.......+..+....|+.++|...+
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 88888888888888754 3 45678888888888888888888888876 5666555555555555568888899888
Q ss_pred HHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010837 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349 (499)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 349 (499)
+.+.+..+ .+..++..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|...+++..+.. +.+
T Consensus 159 ~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 159 LKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 88887643 2467888999999999999999999999874 356788999999999999999999999998853 345
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 010837 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLS 426 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~ 426 (499)
..++..+..++...|++++|...|+++.+ ..| +..+|..+..++.+.|++++|++.|+++.+ +.+..++..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 78899999999999999999999999983 345 577899999999999999999999999876 567889999999
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccc
Q 010837 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW 492 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 492 (499)
.+...|++++|.+.++++.+..|.. ..++..++.+|.+.|++++|.+.++++.+ +.|+....|
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~ 376 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAY 376 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHH
Confidence 9999999999999999999988876 88999999999999999999999999987 455544433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=230.83 Aligned_cols=136 Identities=12% Similarity=0.150 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELF 338 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (499)
+..+.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 55668888999999999999999999999999999999999999999974 79999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhc
Q 010837 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399 (499)
Q Consensus 339 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 399 (499)
++|.+.|+.||..||+.+|.+|++.|++++|.+++++|. +.+..|+..+|+.++..|...
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998 559999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-28 Score=232.08 Aligned_cols=198 Identities=15% Similarity=0.201 Sum_probs=148.5
Q ss_pred HHHHHHHHHHcccCCCc-hhHHHHHHHHHhcCChHHHHHHHHhcCC----CChhHHHHHHHHHHhCC---------ChhH
Q 010837 268 ALEVHCQLIKNVFFEDV-KLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNG---------NPNQ 333 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g---------~~~~ 333 (499)
+..+.+.+.+.+....+ .+++.+|++|++.|++++|.++|++|.+ ||..+|++||.+|++.+ ..++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444444444443332 2345555666666666666666666542 55666666666665443 3678
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|. +.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998 55999999999999999999999999999999987
Q ss_pred C---CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 414 E---KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 414 ~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
+ .||..||+.||.+|++.|+.++|.+++++|.+.+..|+..||+.++..+...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 6 5999999999999999999999999999999999999889999998888753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-24 Score=211.34 Aligned_cols=424 Identities=12% Similarity=-0.006 Sum_probs=287.6
Q ss_pred cchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHHH
Q 010837 45 ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAGY 121 (499)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~ 121 (499)
...+......+...|++++|...|+++.+.. |+...+..+..++.+.|++++|...|+++. +.+..+|..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3456677888899999999999999999987 789999999999999999999999999876 34677899999999
Q ss_pred HhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHH---Hh
Q 010837 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY---VK 198 (499)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~ 198 (499)
.+.|++++|+..|+++...+ +++......++..+ ........+...+..+...+..|+...+..-.... ..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERN-----LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHH-----HHHHHHHHHTTC---------------------------C
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence 99999999999999999875 33444444444333 11111111111121111111111111000000000 00
Q ss_pred CCChhHHHHHHHhc---------cCC-ChHhHHHHHHHHHh---CCCHHHHHHHHHhcCC----------------CC-h
Q 010837 199 GGKTSYARIVFDMM---------LEK-NVICSTSMISGFMS---QGFVEDAEEIFRKTVE----------------KD-I 248 (499)
Q Consensus 199 ~g~~~~A~~~~~~~---------~~~-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~----------------~~-~ 248 (499)
......+...+... ..+ +...+......+.. .|++++|...|+++.+ |+ .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 01111111111111 111 23344444444444 6777777777766543 11 2
Q ss_pred hhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHH
Q 010837 249 VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGY 325 (499)
Q Consensus 249 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 325 (499)
..+..+...+... |++++|...++.+.+.... ...+..+..+|...|++++|...++++.+ .+...+..+...+
T Consensus 238 ~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLK-NDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHS-SCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 2344444444444 7777888888777776544 66777788888888888888888887764 3566788888888
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 405 (499)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHH
Confidence 88888888888888887753 3356677888888888888888888888887431 22566778888888888888888
Q ss_pred HHHHHhCCC----CCC----HHHHHHHHHHHhh---cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHH
Q 010837 406 LKFVLEMPE----KPN----SDVWAALLSSCRL---HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 406 ~~~~~~~~~----~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
.+.++++.. .++ ..++..+...+.. .|++++|...++++.+..+.. ..++..++.+|.+.|++++|.+
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS-EQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhcCHHHHHH
Confidence 888887765 122 3478888888888 888888888888888888776 7788888888888888888888
Q ss_pred HHHHHHhCC
Q 010837 475 LREKMKLRG 483 (499)
Q Consensus 475 ~~~~~~~~~ 483 (499)
.+++..+.+
T Consensus 471 ~~~~a~~~~ 479 (514)
T 2gw1_A 471 LFEESADLA 479 (514)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 888887644
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-21 Score=189.84 Aligned_cols=334 Identities=15% Similarity=0.111 Sum_probs=231.3
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhh
Q 010837 79 NTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155 (499)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 155 (499)
+...+..+...+.+.|++++|...|+.+. +.+..+|..+..++...|++++|++.|+++.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------- 89 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------
Confidence 44445555555555555555555555443 123445555555555555555555555555432
Q ss_pred ccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCC---h---HhHHHHHHHHHh
Q 010837 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN---V---ICSTSMISGFMS 229 (499)
Q Consensus 156 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~l~~~~~~ 229 (499)
+ +.+...+..+..+|.+.|++++|.+.|+++.+.+ . ..+..++..+..
T Consensus 90 -------------------------~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 90 -------------------------K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp -------------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 2 2334556667777777788888877777775532 2 455555444332
Q ss_pred CCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHh
Q 010837 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 309 (499)
.+.+..+...+ ..|++++|...++.+.+... .+...+..+..+|.+.|++++|...|++
T Consensus 144 ~~~~~~a~~~~--------------------~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 144 QRLRSQALNAF--------------------GSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKA 202 (450)
T ss_dssp HHHHHHHHHHH--------------------HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred HHHHHHHHHHH--------------------HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22222222211 12666677777777766543 3567788889999999999999999998
Q ss_pred cCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHcccCcHHHHHHHHH
Q 010837 310 MQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA------------LSACGHAGLVDKGREIFE 374 (499)
Q Consensus 310 ~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l------------l~~~~~~~~~~~a~~~~~ 374 (499)
+.+ .+..+|..++..|...|++++|...|+++.+.. +.+...+..+ ..+|.+.|++++|...|+
T Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281 (450)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 864 477889999999999999999999999998752 3334444444 788889999999999999
Q ss_pred HchHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 375 SMERDYSMKPK-----MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 375 ~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
.+.+. .|+ ...+..+..++.+.|++++|++.++++.. +.+..+|..+..+|...|++++|...++++++.
T Consensus 282 ~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 282 SVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99843 453 44788889999999999999999998775 457889999999999999999999999999998
Q ss_pred CCCCCCchhHHHHHH------------HHhcC-----ChHHHHHHHHHH
Q 010837 448 NANDRPGAYVALSNT------------LAAAG-----KWDSVTELREKM 479 (499)
Q Consensus 448 ~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~~ 479 (499)
.|.. ..++..+..+ |...| +.+++.+.++++
T Consensus 359 ~p~~-~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 359 NEND-QQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp SSSC-HHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred Ccch-HHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 8887 7777777743 44445 566777777763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-22 Score=198.36 Aligned_cols=422 Identities=10% Similarity=-0.012 Sum_probs=275.2
Q ss_pred CcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHH
Q 010837 44 TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAG 120 (499)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~ 120 (499)
....+..+...+.+.|++++|.+.|+++.+.. +.+...+..+..+|.+.|++++|++.|+++. +.+..+|..+...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 45667888889999999999999999999987 5688999999999999999999999999876 3467889999999
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcC--CCCchhHHHHHHHHHHh
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD--VKADDVLYTALVDSYVK 198 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 198 (499)
+...|++++|++.|+.+.. .|+.... .+..+ ...+....+...++.+.+.. ..+........+..+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~---~~~~~~~--~~~~~-----~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL---NGDFDGA--SIEPM-----LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CH-----HHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhc---CCCCChH--HHHHH-----HHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 9999999999999974422 3332211 12222 22333455666666664321 01111111223334555
Q ss_pred CCChhHHHHHHHhccCCChH---hHHHHHHHHHhC--------CCHHHHHHHHHhcCC--CCh-h-------hHHHHHHH
Q 010837 199 GGKTSYARIVFDMMLEKNVI---CSTSMISGFMSQ--------GFVEDAEEIFRKTVE--KDI-V-------VYNAMIEG 257 (499)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~a~~~~~~~~~--~~~-~-------~~~~ll~~ 257 (499)
..+.+.+...+......+.. ....+...+... |++++|..+|+++.+ |+. . .+..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 56666666555555443221 223333222222 367777777777653 321 1 22222233
Q ss_pred HhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHH
Q 010837 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQA 334 (499)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 334 (499)
+... ++.++|...++.+.+.. |+...+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|
T Consensus 253 ~~~~-~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 253 HFLK-NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhc-ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3333 66777777777777754 3356677777777777888888887777653 3566777777777778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 335 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
...+++..+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++..
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88887777653 3345667777777777788888888887777331 22456677777777788888888877777654
Q ss_pred ----C----CCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 415 ----K----PNSDVWAALLSSCRLH----------DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 415 ----~----~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
. .....+..+...+... |++++|...++++.+..|.. ..++..++.+|.+.|++++|.+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS-EQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 1122344445556666 77888888888887777766 677777888888888888888887
Q ss_pred HHHHhCC
Q 010837 477 EKMKLRG 483 (499)
Q Consensus 477 ~~~~~~~ 483 (499)
++..+..
T Consensus 486 ~~al~~~ 492 (537)
T 3fp2_A 486 EDSAILA 492 (537)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 7776644
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-22 Score=191.07 Aligned_cols=373 Identities=10% Similarity=0.036 Sum_probs=241.6
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYM 117 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 117 (499)
+|.+...+..+...+.+.|++++|..+|+.+.+.. +.+...+..+..++...|++++|...|+++.+ .+..+|..+
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 46678889999999999999999999999999875 56789999999999999999999999998763 467789999
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCCh----hhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHH
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDG----YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (499)
...|.+.|++++|.+.|+++.+. .|+. ..+..+...+ ....+..+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~----------------------------~~~~~~~~a 150 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSD----------------------------EMQRLRSQA 150 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHH----------------------------HHHHHHHHH
Confidence 99999999999999999999875 4543 3444443322 011233456
Q ss_pred HHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHhcChhhHHH
Q 010837 194 DSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETARK 267 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~ 267 (499)
..+...|++++|++.|+++.+ .+..++..++..|.+.|++++|.+.|+++. ..+..++..+...+... |+.++
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 229 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL-GDHEL 229 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHH
Confidence 667788888888888888754 356778888888888888888888887765 12334444444444333 44445
Q ss_pred HHHHHHHHHHcccCCCch-hHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 010837 268 ALEVHCQLIKNVFFEDVK-LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (499)
|...++.+.+.. |+.. .+..+.. . + ....+..+...+...|++++|...|+++.+.
T Consensus 230 A~~~~~~~~~~~--p~~~~~~~~~~~-~---~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-- 286 (450)
T 2y4t_A 230 SLSEVRECLKLD--QDHKRCFAHYKQ-V---K---------------KLNKLIESAEELIRDGRYTDATSKYESVMKT-- 286 (450)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHH-H---H---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhC--CChHHHHHHHHH-H---H---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 555555444332 2211 1111100 0 0 0001122256666667777777777776663
Q ss_pred CCC-----HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CH
Q 010837 347 QPN-----YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP-NS 418 (499)
Q Consensus 347 ~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~ 418 (499)
.|+ ...+..+..++.+.|++++|...++.+.+. .| +...|..+..+|...|++++|.+.|+++.+ .| +.
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence 333 235666666677777777777777776622 33 456667777777777777777777776655 23 34
Q ss_pred HHHHHHHHH------------HhhcC-----CHHHHHHHHHH-HHhcCCCCCC---------chhHHHHHHHHhcCChHH
Q 010837 419 DVWAALLSS------------CRLHD-----DVEMANIAANE-IFKLNANDRP---------GAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 419 ~~~~~l~~~------------~~~~~-----~~~~a~~~~~~-~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~ 471 (499)
..+..+..+ |...| +.+++.+.+++ ..+..|+..+ ..+..+..+|...|+.+.
T Consensus 364 ~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 364 QIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 444444422 33333 55677777776 5555554311 145556666666655443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=192.87 Aligned_cols=407 Identities=9% Similarity=-0.046 Sum_probs=292.1
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHH
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIA 119 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~ 119 (499)
|+...+..+..++...|++++|...++.+.+.+ +.+...+..+..++.+.|++++|...|+.+.. .+......++.
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 477889999999999999999999999999986 56778999999999999999999999998752 34444444444
Q ss_pred HHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCC---------CCchhHHH
Q 010837 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV---------KADDVLYT 190 (499)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~ 190 (499)
.+........+.+.+..+...+..|+...+..-.... ...........+...+..... +.+...+.
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK-----DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190 (514)
T ss_dssp HHHHHHHHHHHTTC--------------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH-----hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHH
Confidence 4444333333333333332222222221111111000 001111111111111111110 22244555
Q ss_pred HHHHHHHh---CCChhHHHHHHHhccC----------------C-ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCCh
Q 010837 191 ALVDSYVK---GGKTSYARIVFDMMLE----------------K-NVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDI 248 (499)
Q Consensus 191 ~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~ 248 (499)
.+...+.. .|++++|+..|+++.+ + +..++..+...+...|++++|...|+++. .|+.
T Consensus 191 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 270 (514)
T 2gw1_A 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV 270 (514)
T ss_dssp HHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccH
Confidence 55555554 8999999999988765 2 35678888999999999999999999886 4555
Q ss_pred hhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHH
Q 010837 249 VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGY 325 (499)
Q Consensus 249 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 325 (499)
..+..+...+... |+.++|...++.+.+... .+...+..+...|...|++++|...|+++.+ .+...+..+...+
T Consensus 271 ~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 271 NSYIYMALIMADR-NDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348 (514)
T ss_dssp HHHHHHHHHHHTS-SCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHH
Confidence 5555555666555 888899999999988653 3567888899999999999999999998764 3667889999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC----hhHHHHHHHHHHh---
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK----MEHYACMVDLLGR--- 398 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~--- 398 (499)
...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.....-.++ ...+..+...+..
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999998763 445678888999999999999999999998854222222 3488999999999
Q ss_pred cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHH
Q 010837 399 AGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459 (499)
Q Consensus 399 ~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (499)
.|++++|.+.++++.. +.+..++..+...+...|++++|.+.++++.+..+.. ...+..+
T Consensus 428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~ 489 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM-EEKLQAI 489 (514)
T ss_dssp TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc-HHHHHHH
Confidence 9999999999998876 4567889999999999999999999999999998876 5554443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=179.84 Aligned_cols=389 Identities=12% Similarity=0.043 Sum_probs=284.5
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhh
Q 010837 79 NTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155 (499)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 155 (499)
....+..+...+.+.|++++|...|+++. +.++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34567778888888899999888888765 3467788888888888899999999998888764 3345566666666
Q ss_pred ccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCC------hHhHHHHHHHHHh
Q 010837 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN------VICSTSMISGFMS 229 (499)
Q Consensus 156 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~ 229 (499)
+ ...++.+.|...++.+ . ..|+. ....+..+...+....|...++.+...+ .......+..+..
T Consensus 103 ~-----~~~g~~~~A~~~~~~~-~--~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 103 N-----ESLGNFTDAMFDLSVL-S--LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp H-----HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred H-----HHcCCHHHHHHHHHHH-h--cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 6 7777888888877532 2 22222 2223344555556677788887775531 1223445555666
Q ss_pred CCCHHHHHHHHHhcCCCChh---hHHHHHHHHhcCh-------hhHHHHHHHHHHHHHcccCCC------chhHHHHHHH
Q 010837 230 QGFVEDAEEIFRKTVEKDIV---VYNAMIEGYSISI-------ETARKALEVHCQLIKNVFFED------VKLGSALVDM 293 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~-------~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 293 (499)
..+.+.+...+......+.. ....+...+.... +.+++|..+++.+.+...... ...+..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 77777777766665543332 2333333322222 477888889988887654321 2246677788
Q ss_pred HHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
+...|++++|...|+++.+ |+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|..
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 8999999999999999874 667788889999999999999999999998864 4567889999999999999999999
Q ss_pred HHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 372 IFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 372 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
.++++.+. .| +...+..+...|...|++++|.+.++++.. +.+...+..+...+...|++++|.+.++++++..
T Consensus 332 ~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 332 DFQKAQSL---NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHH---CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999843 34 567889999999999999999999998876 4557789999999999999999999999999876
Q ss_pred CCCCCch------hHHHHHHHHhc----------CChHHHHHHHHHHHhCC
Q 010837 449 ANDRPGA------YVALSNTLAAA----------GKWDSVTELREKMKLRG 483 (499)
Q Consensus 449 ~~~~~~~------~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 483 (499)
+.. ... +..++.++.+. |++++|...+++..+..
T Consensus 409 ~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 409 EVQ-EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHC-SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred Ccc-hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 554 222 34556778888 99999999999998753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-18 Score=158.96 Aligned_cols=304 Identities=12% Similarity=0.083 Sum_probs=169.1
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHH
Q 010837 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189 (499)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (499)
++..+..+...+...|++++|++.|+++.+.. | .+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p---------------------------------------~~~~~~ 40 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--P---------------------------------------DNYIAY 40 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T---------------------------------------TCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--c---------------------------------------ccHHHH
Confidence 35567777888888888888888888877642 2 123344
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCCh-----hhHHHHHHHHhcC
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI-----VVYNAMIEGYSIS 261 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~ll~~~~~~ 261 (499)
..+...+...|++++|.+.|+++.+ .+...|..+...+...|++++|.+.|++..+.+. ......+..+
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 117 (359)
T 3ieg_A 41 YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA--- 117 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH---
Confidence 5555556666666666666666543 2445666666666666777777666666653211 1111111000
Q ss_pred hhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHH
Q 010837 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELF 338 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (499)
.. ...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...+
T Consensus 118 ----~~----------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 177 (359)
T 3ieg_A 118 ----DE----------------MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177 (359)
T ss_dssp ----HH----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HH----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 00 00112234445556666666666655542 24455555566666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHH------------HHHHHHHhcCCHHHH
Q 010837 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYA------------CMVDLLGRAGSLEQA 405 (499)
Q Consensus 339 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~------------~l~~~~~~~~~~~~a 405 (499)
+++.+.. +.+..++..+...+...|++++|...++...+. .| +...+. .+...+.+.|++++|
T Consensus 178 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 253 (359)
T 3ieg_A 178 KAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253 (359)
T ss_dssp HHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6655542 334555555566666666666666666665522 22 222221 224446666666666
Q ss_pred HHHHHhCCC-CCC-H----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 406 LKFVLEMPE-KPN-S----DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 406 ~~~~~~~~~-~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
.+.++++.. .|+ . ..+..+...+...|++++|.+.++++.+..|.. +.++..++.+|.+.|++++|.+.+++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 254 TSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN-VNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666665554 222 1 223345556666666666666666666665554 566666666666666666666666666
Q ss_pred HhC
Q 010837 480 KLR 482 (499)
Q Consensus 480 ~~~ 482 (499)
.+.
T Consensus 333 ~~~ 335 (359)
T 3ieg_A 333 QEH 335 (359)
T ss_dssp HTT
T ss_pred Hhc
Confidence 553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-18 Score=159.81 Aligned_cols=267 Identities=13% Similarity=0.048 Sum_probs=195.1
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcCh
Q 010837 186 DVLYTALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262 (499)
Q Consensus 186 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~ 262 (499)
...+..+...+...|++++|++.|+++.+ .+..++..+...+...|++++|...|+++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~------------------ 64 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI------------------ 64 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH------------------
Confidence 34555666666777777777777766643 245566666666666666666666665543
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C----ChhHHHHH------------HHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K----NVFTWTSM------------IDG 324 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~l------------~~~ 324 (499)
+... .+...+..+..+|...|++++|...|+++.+ | +...+..+ ...
T Consensus 65 --------------~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (359)
T 3ieg_A 65 --------------ALKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129 (359)
T ss_dssp --------------HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HhCC-CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 1334555666667777777777777776654 2 22233333 578
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHH
Q 010837 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 403 (499)
+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++.+.+ ..| +...+..+...+...|+++
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASK---LKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999998863 55778899999999999999999999999983 345 7788999999999999999
Q ss_pred HHHHHHHhCCC-CC-CHHHHH------------HHHHHHhhcCCHHHHHHHHHHHHhcCCCCCC----chhHHHHHHHHh
Q 010837 404 QALKFVLEMPE-KP-NSDVWA------------ALLSSCRLHDDVEMANIAANEIFKLNANDRP----GAYVALSNTLAA 465 (499)
Q Consensus 404 ~a~~~~~~~~~-~~-~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 465 (499)
+|.+.|+++.. .| +...+. .+...+...|++++|...++++.+..+.. . ..+..++.++.+
T Consensus 206 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV-AEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHH
Confidence 99999998876 23 334333 23667899999999999999999988775 3 235568899999
Q ss_pred cCChHHHHHHHHHHHhCCCccCccccc
Q 010837 466 AGKWDSVTELREKMKLRGVLKDTGCSW 492 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~~~~~~~~~~ 492 (499)
.|++++|.+.+++..+. .|+....|
T Consensus 285 ~~~~~~A~~~~~~~~~~--~~~~~~~~ 309 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQM--EPDNVNAL 309 (359)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred ccCHHHHHHHHHHHHHh--CcccHHHH
Confidence 99999999999999875 35444333
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-16 Score=157.93 Aligned_cols=211 Identities=9% Similarity=0.078 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHcccCCCchhHHHHHHHHHh-------cCChH-------HHHHHHHhcCC---C-ChhHHHHHHHHHHh
Q 010837 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAK-------CGKID-------DARRVFDHMQQ---K-NVFTWTSMIDGYGK 327 (499)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 327 (499)
+.+..++++.+...+ .+...|...+..+.+ .|+++ +|..+|++..+ | +...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 367778888887643 356788888887775 79987 89999999874 3 57789999999999
Q ss_pred CCChhHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHH-HHhcCCHH
Q 010837 328 NGNPNQALELFCMMQECCVQPN-Y-VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDL-LGRAGSLE 403 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~~~~~ 403 (499)
.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+. .| +...|...+.. +...|+.+
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChh
Confidence 99999999999999984 554 2 57888888888999999999999999832 34 33334333222 34689999
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---CCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 404 QALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND---RPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 404 ~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
+|..+|++..+ +.+...|..++..+.+.|+.++|..+|++++...+.+ ....|...+....+.|+.+.+.++.++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998876 3468899999999999999999999999999986544 123788888988999999999999998
Q ss_pred HHhC
Q 010837 479 MKLR 482 (499)
Q Consensus 479 ~~~~ 482 (499)
+.+.
T Consensus 489 ~~~~ 492 (530)
T 2ooe_A 489 RFTA 492 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-19 Score=161.66 Aligned_cols=282 Identities=11% Similarity=0.067 Sum_probs=79.4
Q ss_pred CChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHH
Q 010837 94 GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMV 173 (499)
Q Consensus 94 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~ 173 (499)
|++++|.+.++++..| .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++ ...|+++.+..+
T Consensus 17 ~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~a-----e~~g~~EeAi~y 83 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAA-----NTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHH-----HhCCCHHHHHHH
Confidence 4444444444444222 2444444444444444444444432 12333444444444 344444444443
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHH
Q 010837 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253 (499)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 253 (499)
++..++. .+++.+.+.++.+|.+.|+++++.++++. ++..+|+.+...|...|.+++|..+|..+ ..|..
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~ 153 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGR 153 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHH
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHH
Confidence 3333331 22234444444445555554444444432 33344444555555555555555555443 23444
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhH
Q 010837 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 254 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 333 (499)
+..++.+. |++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 154 LA~~L~~L-g~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 154 LASTLVHL-GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHTT-TCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHh-ccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 44444444 4444444444444 144555555555555555555555444433 222223345555555566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHccc--CcHHHHHHHHHHchHhcCCCC------ChhHHHHHHHHHHhcCCHHHH
Q 010837 334 ALELFCMMQECCVQPNYVTFLGALSACGHA--GLVDKGREIFESMERDYSMKP------KMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~a 405 (499)
|..+++...... +.....|+.+..+|++- +++.+..+.|. .+.+++| +...|..++-.|..-++++.|
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 655555554432 23333444443333332 22333333322 1223333 234455555556666666655
Q ss_pred HHHHH
Q 010837 406 LKFVL 410 (499)
Q Consensus 406 ~~~~~ 410 (499)
....-
T Consensus 302 ~~tm~ 306 (449)
T 1b89_A 302 IITMM 306 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-16 Score=155.18 Aligned_cols=370 Identities=12% Similarity=0.003 Sum_probs=268.8
Q ss_pred ChHHHHHHHHHHHc----CCChhHHHHHhccCCC-CChHHHHHHHHHHHh----CCChhhHHHHHHHHHHcCCCCChhhH
Q 010837 79 NTNISIKLLILHLK----CGALKYAGQMFDELPQ-RTLSAYNYMIAGYLK----NGQVEESLSLVRKLVSSGERPDGYTF 149 (499)
Q Consensus 79 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~ 149 (499)
+...+..+...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|.+.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55666666666666 6777888877776543 456677777777777 777888888888777654 34444
Q ss_pred HHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh----CCChhHHHHHHHhccCC-ChHhHHHHH
Q 010837 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK----GGKTSYARIVFDMMLEK-NVICSTSMI 224 (499)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~ 224 (499)
..+-..+. .+....++.+.|...++...+.| +...+..|...|.. .+++++|++.|++..+. +...+..+.
T Consensus 115 ~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 115 QNLGVMYH-EGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44444441 11123567777888887777765 45566677777776 67888888888877553 566777777
Q ss_pred HHHHh----CCCHHHHHHHHHhcCCC-ChhhHHHHHHHHhc---ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh
Q 010837 225 SGFMS----QGFVEDAEEIFRKTVEK-DIVVYNAMIEGYSI---SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296 (499)
Q Consensus 225 ~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (499)
..|.. .++.++|.++|++..+. +...+..+-..+.. ..++.++|..+++...+.| +...+..+...|..
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQ 267 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHC
Confidence 77777 78888888888877643 44444444444443 2467788888888887764 34556667777777
Q ss_pred ----cCChHHHHHHHHhcCC-CChhHHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC--
Q 010837 297 ----CGKIDDARRVFDHMQQ-KNVFTWTSMIDGYGKN-----GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG-- 364 (499)
Q Consensus 297 ----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-- 364 (499)
.++.++|...|++..+ .+...+..+...|... ++.++|...|++..+.| +...+..+...|...|
T Consensus 268 g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 268 GLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSE 344 (490)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCc
Confidence 8899999999998765 4667778888888887 89999999999998865 4556666776776655
Q ss_pred -cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHH
Q 010837 365 -LVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----AGSLEQALKFVLEMPEKPNSDVWAALLSSCRL----HDDVE 435 (499)
Q Consensus 365 -~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 435 (499)
+.++|.++|++..+. .+...+..|...|.. .+++++|.+.|++..+..+...+..|...|.. .++.+
T Consensus 345 ~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred ccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 889999999998843 356778888888888 89999999999998877788888999999887 89999
Q ss_pred HHHHHHHHHHhcCCCC--CCchhHHHHHHHHh
Q 010837 436 MANIAANEIFKLNAND--RPGAYVALSNTLAA 465 (499)
Q Consensus 436 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 465 (499)
+|...|+++.+.++.+ ++.....+...+.+
T Consensus 421 ~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 421 QAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999988541 14455555554443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-18 Score=155.87 Aligned_cols=285 Identities=12% Similarity=0.019 Sum_probs=198.0
Q ss_pred CCCchhHHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CC-ChhhHHHHH
Q 010837 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--EK-DIVVYNAMI 255 (499)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll 255 (499)
.+.+...+..+...+...|++++|.++|+++.+. +...+..++..+...|++++|...++++. .| +...+..+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3456667777888888889999999888887543 45566777788888888888888888776 33 344555555
Q ss_pred HHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChh
Q 010837 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPN 332 (499)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 332 (499)
..+...++..++|...++.+.+... .+...+..+...+...|++++|...|+++.+ .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 5555552277777777777776543 2455677777778888888888887777654 24456666777777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcC-------CCCChhHHHHHHHHHHhcCCHHHH
Q 010837 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS-------MKPKMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~~~~~~a 405 (499)
+|.+.+++..+.. +.+...+..+...+...|++++|...++++.+... .+....++..+..+|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888777653 44566777777777778888888887777764321 022345677777777778888888
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH-HhcCCh
Q 010837 406 LKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL-AAAGKW 469 (499)
Q Consensus 406 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 469 (499)
.+.++++.+ +.+...+..+...+...|++++|.+.++++.+..|.. ...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD-TFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC-HHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc-hHHHHHHHHHHHHHhCch
Confidence 877777665 3456677777777777788888888888777777765 66777777776 345543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-17 Score=154.24 Aligned_cols=269 Identities=13% Similarity=0.078 Sum_probs=226.0
Q ss_pred CChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHH
Q 010837 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTV--EK-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291 (499)
Q Consensus 215 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (499)
.+...+..++..+...|++++|.++|+++. .| +...+..+...+... ++.++|...++.+.+... .+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL-NKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHh-hhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 366678888999999999999999999987 34 334454455555444 889999999999998653 3677888899
Q ss_pred HHHHhcC-ChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHH
Q 010837 292 DMYAKCG-KIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367 (499)
Q Consensus 292 ~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 367 (499)
..+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999999875 356789999999999999999999999998864 334567777889999999999
Q ss_pred HHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHhhcCCHH
Q 010837 368 KGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-----------KPNSDVWAALLSSCRLHDDVE 435 (499)
Q Consensus 368 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~ 435 (499)
+|...++++. ...| +...+..+...+...|++++|...++++.. +....++..+...+...|+++
T Consensus 177 ~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999998 3345 678899999999999999999999987764 233578999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccc
Q 010837 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW 492 (499)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 492 (499)
+|...++++.+..+.. ..++..++.+|.+.|++++|.+.+++..+. .|+....|
T Consensus 254 ~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 307 (330)
T 3hym_B 254 EALDYHRQALVLIPQN-ASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSV 307 (330)
T ss_dssp HHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHH
T ss_pred HHHHHHHHHHhhCccc-hHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHH
Confidence 9999999999999887 899999999999999999999999988664 45544433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-15 Score=148.24 Aligned_cols=358 Identities=13% Similarity=0.016 Sum_probs=291.3
Q ss_pred CCChHHHHHHHHHHHh----CCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCC
Q 010837 108 QRTLSAYNYMIAGYLK----NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183 (499)
Q Consensus 108 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 183 (499)
..++.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. +....++.+.|...++...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~-g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMN-GEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHHHCC--
Confidence 4577788888888888 899999999999998865 45555555555521 1233788999999999998876
Q ss_pred CchhHHHHHHHHHHh----CCChhHHHHHHHhccCC-ChHhHHHHHHHHHh----CCCHHHHHHHHHhcCCC-ChhhHHH
Q 010837 184 ADDVLYTALVDSYVK----GGKTSYARIVFDMMLEK-NVICSTSMISGFMS----QGFVEDAEEIFRKTVEK-DIVVYNA 253 (499)
Q Consensus 184 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~ 253 (499)
+...+..|...|.. .+++++|.+.|++..+. +...+..+...|.. .+++++|.+.|++..+. +...+..
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66777788888888 88999999999998665 67788888888887 88999999999988744 5555555
Q ss_pred HHHHHhc---ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh----cCChHHHHHHHHhcCC-CChhHHHHHHHHH
Q 010837 254 MIEGYSI---SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK----CGKIDDARRVFDHMQQ-KNVFTWTSMIDGY 325 (499)
Q Consensus 254 ll~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~ 325 (499)
+-..+.. ..++.++|..+++...+.| +...+..+...|.. .+++++|..+|++..+ .+...+..+...|
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555544 1478899999999998875 45667778888886 7899999999998765 4677788888888
Q ss_pred Hh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc-----CcHHHHHHHHHHchHhcCCCCChhHHHHHHHHH
Q 010837 326 GK----NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA-----GLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396 (499)
Q Consensus 326 ~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 396 (499)
.. .++.++|.+.|++..+.| +...+..+...|... ++.++|...|++..+. + +...+..|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y 338 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIY 338 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHH
Confidence 87 899999999999998764 455666777777766 8999999999999843 3 445677788888
Q ss_pred HhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh----
Q 010837 397 GRAG---SLEQALKFVLEMPEKPNSDVWAALLSSCRL----HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA---- 465 (499)
Q Consensus 397 ~~~~---~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 465 (499)
...| ++++|+++|++..+..+...+..|...|.. .+++++|.+.++++.+.+. +..+..+..+|..
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~---~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL---SAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSS
T ss_pred HhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCC
Confidence 7766 889999999998887788999999999988 8999999999999998762 6789999999998
Q ss_pred cCChHHHHHHHHHHHhCCCc
Q 010837 466 AGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~~~ 485 (499)
.+++++|...+++..+.+..
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCC
Confidence 89999999999999987743
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-16 Score=140.38 Aligned_cols=270 Identities=10% Similarity=-0.001 Sum_probs=212.5
Q ss_pred HHHHhCCChhHHHHHHHhccCCC----hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHH
Q 010837 194 DSYVKGGKTSYARIVFDMMLEKN----VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 269 (499)
+-....|++..|+..++.....+ ......+.++|...|++++|+..++....|+..++..+...+... ++.++|.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~-~~~~~A~ 85 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASH-SRRDAIV 85 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCS-TTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCC-CcHHHHH
Confidence 34567899999999998876643 235566789999999999999988765444555566666555555 8889999
Q ss_pred HHHHHHHHcccCCC-chhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010837 270 EVHCQLIKNVFFED-VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348 (499)
Q Consensus 270 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 348 (499)
+.++.+...+..|+ ...+..+..++.+.|++++|.+.+++ ..+...+..++..+.+.|++++|.+.|+++.+.. |
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 99999998875554 55667778899999999999999998 5678899999999999999999999999998863 5
Q ss_pred CHHHH---HHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHH
Q 010837 349 NYVTF---LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAA 423 (499)
Q Consensus 349 ~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ 423 (499)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++.. +.+..++..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 53311 22334455669999999999999954 234788899999999999999999999999876 457789999
Q ss_pred HHHHHhhcCCHHH-HHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHH
Q 010837 424 LLSSCRLHDDVEM-ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475 (499)
Q Consensus 424 l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (499)
++..+...|+.++ +.++++++.+.+|.. +. +.....+.+.++++..-
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~-~~----~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSH-PF----IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTC-HH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCC-hH----HHHHHHHHHHHHHHHHH
Confidence 9999999999875 678999999999887 33 33445566666665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-17 Score=155.37 Aligned_cols=276 Identities=12% Similarity=0.013 Sum_probs=202.1
Q ss_pred hCCChhHHHH-HHHhccCC-------ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHhcChhhHH
Q 010837 198 KGGKTSYARI-VFDMMLEK-------NVICSTSMISGFMSQGFVEDAEEIFRKTV--EK-DIVVYNAMIEGYSISIETAR 266 (499)
Q Consensus 198 ~~g~~~~A~~-~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~ 266 (499)
-.|++++|.+ .|++..+. +...+..+...+.+.|++++|...|+++. .| +...+..+...+... |+.+
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN-EQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT-TCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-cCHH
Confidence 3466777776 66654331 23456677777777777777777777765 23 334455555555444 6777
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHH---------------HHHHHHhC
Q 010837 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTS---------------MIDGYGKN 328 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~---------------l~~~~~~~ 328 (499)
+|...++.+.+... .+..++..+..+|...|++++|...|+++.+. +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 77777777776643 35667777888888888888888888877642 1122211 13333488
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHH
Q 010837 329 GNPNQALELFCMMQECCVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQAL 406 (499)
Q Consensus 329 g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 406 (499)
|++++|...++++.+..... +..++..+...+...|++++|...++++... .| +...+..+...+...|++++|+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998863221 5788999999999999999999999999843 34 5788999999999999999999
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC----------CCchhHHHHHHHHhcCChHHHHH
Q 010837 407 KFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND----------RPGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 407 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
+.|+++.. +.+..++..+..++...|++++|...++++.+..+.. ...+|..++.+|.+.|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 99999876 4567899999999999999999999999999876654 25789999999999999999998
Q ss_pred HHHH
Q 010837 475 LREK 478 (499)
Q Consensus 475 ~~~~ 478 (499)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.8e-15 Score=150.49 Aligned_cols=384 Identities=9% Similarity=0.064 Sum_probs=284.0
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhC--CCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTG--VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 118 (499)
...+++-....+++|...|.+.+|.++++++.-.+ +.-+....+.++....+. +..+..+..+.+..-+ ...+.
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA 1056 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIA 1056 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHH
Confidence 34567777888999999999999999999998332 113445666666666655 4455555555554333 34477
Q ss_pred HHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010837 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198 (499)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (499)
..+...|.+++|..+|++.. -.....+.++ ...++++.|.++.++. -+..+|..+..++..
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi--------e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLI--------EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH--------HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 88888999999999999862 2223334444 2445677777777644 346788999999999
Q ss_pred CCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHH
Q 010837 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLI 276 (499)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 276 (499)
.|++++|++.|.+. .|...|..++..+.+.|++++|.++|.... .++......+..++++. +..++...+.
T Consensus 1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl-~rleele~fI---- 1190 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT-NRLAELEEFI---- 1190 (1630)
T ss_pred CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh-cCHHHHHHHH----
Confidence 99999999999764 678888999999999999999999997655 23333344577777776 6665433332
Q ss_pred HcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010837 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356 (499)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 356 (499)
+ .++...+..+...|...|++++|..+|..+ ..|..+...+.+.|++++|.+.+++. .+..+|..+
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 2 345566777999999999999999999985 58999999999999999999999876 456889989
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc--C
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLH--D 432 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~--~ 432 (499)
-.+|...|++..|....-.+ ..+...+..++..|.+.|.+++|+++++.... +.....|+-|...+.+. +
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 99999999999998866432 24556678999999999999999999998876 33445666666666554 4
Q ss_pred CHHHHHHHHHHHHhcCC----CCCCchhHHHHHHHHhcCChHHHHH
Q 010837 433 DVEMANIAANEIFKLNA----NDRPGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
+..++.+.|..-....+ -.+...|..++..|.+.|+++.|..
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 55555555543322211 0125779999999999999999984
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-15 Score=148.52 Aligned_cols=405 Identities=10% Similarity=0.021 Sum_probs=285.8
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC--CChHHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNYMI 118 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li 118 (499)
+|-+...|..++.. ...|+++.|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++... |++..|...+
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 46678889888884 77899999999999999874 66788999999999999999999999999774 7777887777
Q ss_pred HHH-HhCCChhhHHH----HHHHHHHc-CCCCC-hhhHHHHhhhcccccc----CCcCcchhHHHHHHHHHHcCCCCchh
Q 010837 119 AGY-LKNGQVEESLS----LVRKLVSS-GERPD-GYTFSMILKASTCCRS----NVPLPRNLGRMVHAQILKCDVKADDV 187 (499)
Q Consensus 119 ~~~-~~~g~~~~a~~----~~~~m~~~-g~~p~-~~~~~~ll~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~ 187 (499)
... ...|+.++|.+ +|+..... |..|+ ...|...+........ ...++.+.+..+++..++........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 45688887765 77766553 55554 4455555443310000 12567889999999988731111123
Q ss_pred HHHHHHHHH-------------HhCCChhHHHHHHHhc------cC-------CC--------hHhHHHHHHHHHhC---
Q 010837 188 LYTALVDSY-------------VKGGKTSYARIVFDMM------LE-------KN--------VICSTSMISGFMSQ--- 230 (499)
Q Consensus 188 ~~~~l~~~~-------------~~~g~~~~A~~~~~~~------~~-------~~--------~~~~~~l~~~~~~~--- 230 (499)
.|....... .+.++++.|..+++.+ .+ ++ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 443332211 1345677777766651 11 11 24555555433322
Q ss_pred -CCH----HHHHHHHHhcC--CC-ChhhHHHHHHHHhc------ChhhHH-------HHHHHHHHHHHcccCCCchhHHH
Q 010837 231 -GFV----EDAEEIFRKTV--EK-DIVVYNAMIEGYSI------SIETAR-------KALEVHCQLIKNVFFEDVKLGSA 289 (499)
Q Consensus 231 -g~~----~~a~~~~~~~~--~~-~~~~~~~ll~~~~~------~~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 289 (499)
++. +.+..+|++.. .| +...|......+.. ..|+.+ +|..+++...+.-.+.+...+..
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 36777888876 33 55566666665543 135554 88999999886323345778889
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--C-Ch-hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHcccC
Q 010837 290 LVDMYAKCGKIDDARRVFDHMQQ--K-NV-FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS-ACGHAG 364 (499)
Q Consensus 290 l~~~~~~~g~~~~a~~~~~~~~~--~-~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~ 364 (499)
++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..+.. +.+...|..... .+...|
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcC
Confidence 99999999999999999999874 3 33 478889999999999999999999998753 223333332222 233589
Q ss_pred cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C--CHHHHHHHHHHHhhcCCHHHHH
Q 010837 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK----P--NSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.... | ....|...+......|+.+.+.
T Consensus 406 ~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred ChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999998543 226788999999999999999999999998652 2 2448888888888999999999
Q ss_pred HHHHHHHhcCCC
Q 010837 439 IAANEIFKLNAN 450 (499)
Q Consensus 439 ~~~~~~~~~~~~ 450 (499)
.+.+++.+..|.
T Consensus 484 ~~~~r~~~~~p~ 495 (530)
T 2ooe_A 484 KVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHCch
Confidence 999999887763
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-17 Score=152.04 Aligned_cols=286 Identities=11% Similarity=0.061 Sum_probs=150.3
Q ss_pred cCCChhHHHH-HhccCCC--C-----ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCC
Q 010837 92 KCGALKYAGQ-MFDELPQ--R-----TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163 (499)
Q Consensus 92 ~~~~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 163 (499)
-.|++++|.. .|++... + +...+..+...+.+.|++++|+..|+++.+..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------- 94 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---------------------- 94 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence 3467777776 6664432 1 23456667777777777777777777776542
Q ss_pred cCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHH
Q 010837 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIF 240 (499)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 240 (499)
+.+...+..+..++...|++++|++.|+++.+ .+..++..+...+...|++++|.+.|
T Consensus 95 -------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 95 -------------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22334455566666777777777777766643 24566777777777777777777777
Q ss_pred HhcC--CCChh-hHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C--
Q 010837 241 RKTV--EKDIV-VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-- 313 (499)
Q Consensus 241 ~~~~--~~~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-- 313 (499)
+++. .|+.. .+..... .. +. ..+ ...+..+...+ ..|++++|...|+++.+ |
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~~---~~---------------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~ 214 (368)
T 1fch_A 156 RDWLRYTPAYAHLVTPAEE-GA---GG---------------AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS 214 (368)
T ss_dssp HHHHHTSTTTGGGCC-----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHhCcCcHHHHHHHHH-Hh---hh---------------hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc
Confidence 6665 22211 1110000 00 00 000 00001111222 55555555555555442 2
Q ss_pred -ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHH
Q 010837 314 -NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYAC 391 (499)
Q Consensus 314 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 391 (499)
+..++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+. .| +...+..
T Consensus 215 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~ 290 (368)
T 1fch_A 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYN 290 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHH
Confidence 24455555666666666666666666655532 334455566666666666666666666665522 23 4455666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCC-----------HHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPE--KPN-----------SDVWAALLSSCRLHDDVEMANIAANE 443 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~--~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (499)
+..+|.+.|++++|...|+++.. +.+ ..+|..+..++...|++++|..++++
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 66666666666666666655544 111 45666666666666666666666553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-17 Score=153.43 Aligned_cols=256 Identities=12% Similarity=-0.000 Sum_probs=188.7
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHH
Q 010837 218 ICSTSMISGFMSQGFVEDAEEIFRKTV--EK-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294 (499)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (499)
..|..+...+.+.|++++|.+.|+++. .| +...+..+...+... |+.++|...++.+.+... .+...+..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAEN-ENEQAAIVALQRCLELQP-NNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 345566666666666666666666654 22 334444444444444 566666666666666532 2466777888888
Q ss_pred HhcCChHHHHHHHHhcCCCC-------------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 010837 295 AKCGKIDDARRVFDHMQQKN-------------VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ-PNYVTFLGALSAC 360 (499)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~ 360 (499)
...|++++|...|+++.+.+ ...+..+...+...|++++|..+++++.+.... ++..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 88899999998888876421 223344578888999999999999999886422 1688899999999
Q ss_pred cccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMA 437 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 437 (499)
...|++++|...|+++.+. .| +..+|..+..+|...|++++|++.|+++.. +.+..++..+..+|...|++++|
T Consensus 224 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999843 34 678899999999999999999999998876 34588999999999999999999
Q ss_pred HHHHHHHHhcCCCC-----------CCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 438 NIAANEIFKLNAND-----------RPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 438 ~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
...++++++..+.. +..+|..+..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999876552 257899999999999999999887664
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-16 Score=147.74 Aligned_cols=225 Identities=12% Similarity=0.103 Sum_probs=129.5
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHH
Q 010837 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189 (499)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (499)
+...|..+...+.+.|++++|+++|+++.+.. +.+..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----------------------------------------p~~~~~~ 102 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-----------------------------------------PGDAEAW 102 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------------------------TTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------------------cCCHHHH
Confidence 45568888888889999999999999887642 2234456
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCC--CCh-hhH----------HH
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVE--KDI-VVY----------NA 253 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~----------~~ 253 (499)
..+..+|...|++++|++.|++..+ .+..+|..+...|...|++++|.+.|+++.+ |+. ..+ ..
T Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 182 (365)
T 4eqf_A 103 QFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR 182 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHH
Confidence 6677777777888888877777644 2466777777888888888888887777652 211 111 11
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcccCC-CchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCC
Q 010837 254 MIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNG 329 (499)
Q Consensus 254 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g 329 (499)
+...+ ...|+.++|...++.+.+..... +..++..+...|.+.|++++|...|+++.+ .+..+|..+..+|...|
T Consensus 183 l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 183 MSKSP-VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD 261 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHH-hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 12222 22255555555555555543221 344555555555555555555555555442 23445555555555555
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus 262 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555431 2234455555555555555555555555554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.5e-16 Score=138.66 Aligned_cols=244 Identities=9% Similarity=0.060 Sum_probs=157.4
Q ss_pred hCCCChhhHHHHHHHHHHhCCCCCh--HHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHH
Q 010837 56 INSDTPFYGLKIHAHITKTGVKPNT--NISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133 (499)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 133 (499)
-..|++..|+...+..... .|+. .....+.++|...|++++|+..++....|+..++..+...+...|+.++|++.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 3456666666655543322 2222 23344556666666666666666554444555566666666666666666666
Q ss_pred HHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcc
Q 010837 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213 (499)
Q Consensus 134 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (499)
++++...++.|+ +...+..+...+...|++++|++.+++
T Consensus 88 l~~ll~~~~~P~---------------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 88 LDREMSRSVDVT---------------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp HHHHHHSCCCCS---------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred HHHHHhcccCCC---------------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 666655443333 333445566778899999999999998
Q ss_pred CCChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHH---HHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHH
Q 010837 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNA---MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGS 288 (499)
Q Consensus 214 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~---ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (499)
..+...+..++..+.+.|++++|.+.|+++. .|+...... ++.. ....+..++|..+++++.+.. +.+...++
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l-~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~ 204 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL-AAGGEKLQDAYYIFQEMADKC-SPTLLLLN 204 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHS-CCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhCchHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 4578889999999999999999999999887 454322111 1121 223367777777777777763 34566777
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhH-HHHHHHHHHHc
Q 010837 289 ALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQ-ALELFCMMQEC 344 (499)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 344 (499)
.+..++.+.|++++|...|+++.+ .+..++..++..+...|+.++ +.++++++.+.
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 777777777777777777777653 255667777777777777755 45677776663
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-16 Score=142.60 Aligned_cols=279 Identities=11% Similarity=0.044 Sum_probs=86.9
Q ss_pred CCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHH
Q 010837 57 NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (499)
+.|++++|.++++++ +++.+|..+..++.+.|++++|++.|.+ .+|...|..++..+...|++++|++.++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445566666666655 2223666666666666666666666644 24555666666666666666666665555
Q ss_pred HHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCC
Q 010837 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216 (499)
Q Consensus 137 m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (499)
.++. .++..+.+.++.++ .+.|++..+.++++ .|+..+|+.+.+.|...|.+++|...|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y-----~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 87 ARKK--ARESYVETELIFAL-----AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHh--CccchhHHHHHHHH-----HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 5442 33455555666666 55555555555553 255556666666666666666666666655
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh
Q 010837 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296 (499)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (499)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|... |+++.|...... +...+.....++..|.+
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~-~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDG-KEFRLAQMCGLH-----IVVHADELEELINYYQD 219 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHT-TCHHHHHHTTTT-----TTTCHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHc-CcHHHHHHHHHH-----HHhCHhhHHHHHHHHHH
Confidence 35666666666666666666666666 2556666666666555 555555332222 11222223345666666
Q ss_pred cCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCC------CHHHHHHHHHHHcccCcH
Q 010837 297 CGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQEC-CVQP------NYVTFLGALSACGHAGLV 366 (499)
Q Consensus 297 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~ll~~~~~~~~~ 366 (499)
.|++++|..+++....- ....|+-+.-+|++- ++++.++.++...+. +++| +...|..+.-.|.+.+++
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 66666666666665432 334455554444443 233333333322211 1111 223455555556666666
Q ss_pred HHHHH
Q 010837 367 DKGRE 371 (499)
Q Consensus 367 ~~a~~ 371 (499)
+.|..
T Consensus 299 d~A~~ 303 (449)
T 1b89_A 299 DNAII 303 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.8e-16 Score=149.11 Aligned_cols=371 Identities=13% Similarity=0.070 Sum_probs=206.8
Q ss_pred CChHHHHHHHHHHHcCCChhHHHHHhccCC------------CCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC
Q 010837 78 PNTNISIKLLILHLKCGALKYAGQMFDELP------------QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145 (499)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 145 (499)
.....|+.|...+...|++++|++.|++.. .....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~---- 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC---- 124 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh----
Confidence 345678889999999999999999887642 1245688999999999999999999988876420
Q ss_pred hhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh--CCChhHHHHHHHhccC--C-ChHhH
Q 010837 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK--GGKTSYARIVFDMMLE--K-NVICS 220 (499)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~ 220 (499)
..+ ..... .....++..+..++.. .+++++|++.|++..+ | +...+
T Consensus 125 --------~~~-----~~~~~----------------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 125 --------EKF-----SSPYR----------------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175 (472)
T ss_dssp --------HHS-----CCSSC----------------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred --------Hhc-----ccccc----------------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence 000 00000 0111223323222322 3346666666666533 2 33333
Q ss_pred HHHHHH---HHhCCCHHHHHHHHHhcC--CC-ChhhHHHHHHHH---hcChhhHHHHHHHHHHHHHcccCCCchhHHHHH
Q 010837 221 TSMISG---FMSQGFVEDAEEIFRKTV--EK-DIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALV 291 (499)
Q Consensus 221 ~~l~~~---~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (499)
..+..+ +...++.++|++.+++.. .| +...+..+...+ ....+..++|...++...+... .+...+..+.
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg 254 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHH
Confidence 333332 334455566666665544 23 223333222222 2223455567777766665543 2445666677
Q ss_pred HHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHh-------------------CCChhHHHHHHHHHHHcCCCCC
Q 010837 292 DMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGK-------------------NGNPNQALELFCMMQECCVQPN 349 (499)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~-------------------~g~~~~a~~~~~~m~~~~~~p~ 349 (499)
..|.+.|++++|...|+++.+ | +..++..+...|.. .+..++|...+++..+.. +.+
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 333 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNL 333 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTT
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cch
Confidence 777777777777777777654 2 34455555444432 123567777787776653 334
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCCh--hHHHHHHH-HHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 010837 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM--EHYACMVD-LLGRAGSLEQALKFVLEMPE-KPNSDVWAALL 425 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~ 425 (499)
..++..+...+...|++++|...|++..+. ...+.. ..+..+.. .+...|++++|+..|++... .|+......
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~-- 410 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK-- 410 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH--
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH--
Confidence 456777888889999999999999988732 322211 12333332 23467899999999887765 444332222
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccccc
Q 010837 426 SSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVG 494 (499)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 494 (499)
....+..++++.++.+|.. +.+|..++.+|...|++++|.+.+++..+.|-....+.+|+.
T Consensus 411 -------~~~~l~~~~~~~l~~~p~~-~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 411 -------MKDKLQKIAKMRLSKNGAD-SEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -------HHHHHHHHHHHHHHHCC-C-TTHHHHHHHHHHHHHHCC------------------------
T ss_pred -------HHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2344566777788888887 899999999999999999999999999988766666677763
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-16 Score=145.07 Aligned_cols=258 Identities=9% Similarity=-0.071 Sum_probs=191.5
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcC
Q 010837 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261 (499)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 261 (499)
+...+..+...+...|++++|.++|+++.+ .+...+..+...+...|++++|.+.|+++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----------------- 82 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR----------------- 82 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------
Confidence 334556677777888888888888877744 255667777777777777777777776654
Q ss_pred hhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHH--------------HH-
Q 010837 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSM--------------ID- 323 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l--------------~~- 323 (499)
+.. +.+...+..+...|...|++++|...++++.+. +...+..+ ..
T Consensus 83 ---------------~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 83 ---------------MLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp ---------------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred ---------------hcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 211 112334444555566666666666666555431 11122221 22
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCH
Q 010837 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 402 (499)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..+...+...|++
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCH
Confidence 3667788999999999998763 446788889999999999999999999998843 34 577889999999999999
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----------CCchhHHHHHHHHhcCCh
Q 010837 403 EQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-----------RPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 403 ~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~ 469 (499)
++|.+.|+++.. +.+..++..+...+...|++++|.+.++++.+..+.. +..++..++.++.+.|++
T Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 999999998776 4567889999999999999999999999999988772 367899999999999999
Q ss_pred HHHHHHHHHH
Q 010837 470 DSVTELREKM 479 (499)
Q Consensus 470 ~~A~~~~~~~ 479 (499)
++|..++++.
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-15 Score=135.76 Aligned_cols=192 Identities=9% Similarity=-0.013 Sum_probs=146.8
Q ss_pred CcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHH
Q 010837 44 TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAG 120 (499)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~ 120 (499)
+...+......+...|++++|..+++++.+.. +.+...+..+...+.+.|++++|...|+++. +.+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 55667888889999999999999999999886 5578889999999999999999999999875 3467789999999
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCChh-hHHHH--------------hh-hccccccCCcCcchhHHHHHHHHHHcCCCC
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDGY-TFSMI--------------LK-ASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l--------------l~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 184 (499)
+...|++++|++.++++.+.. |+.. .+..+ .. .+ ...++.+.|...++.+.+.. +.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~-~~ 170 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFF-----AAPNEYRECRTLLHAALEMN-PN 170 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCT-----TSHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHH-----HHcccHHHHHHHHHHHHhhC-CC
Confidence 999999999999999998763 3332 22222 11 23 66677777777777777664 34
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
+...+..+...+...|++++|.+.+++..+ .+..+|..+...+...|++++|.+.|++..
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566777777778888888888887777643 245667777777777777777777776654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-17 Score=164.66 Aligned_cols=162 Identities=12% Similarity=0.138 Sum_probs=127.8
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcC-------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQ-------QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 355 (499)
-..+|++||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34689999999999999999999997764 48999999999999999999999999999999999999999999
Q ss_pred HHHHHcccCc-HHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHhh
Q 010837 356 ALSACGHAGL-VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK----PNSDVWAALLSSCRL 430 (499)
Q Consensus 356 ll~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~ 430 (499)
+|.++++.|+ .++|.++|++|. +.|+.||..+|++++....+.+-++.+.++...+.-+ |...+...|.+.|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 9999999998 478999999999 4599999999999998776654444444433322221 223444556666665
Q ss_pred cC---------CHHHHHHHHHHHH
Q 010837 431 HD---------DVEMANIAANEIF 445 (499)
Q Consensus 431 ~~---------~~~~a~~~~~~~~ 445 (499)
.+ ..++-.+.+++-+
T Consensus 285 d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 285 DGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp CSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred CCCCcCccccCCHHHHHHHHHHHH
Confidence 54 2455555555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-13 Score=137.15 Aligned_cols=349 Identities=11% Similarity=0.042 Sum_probs=244.5
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHhccCC-CC-----ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 010837 79 NTNISIKLLILHLKCGALKYAGQMFDELP-QR-----TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152 (499)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 152 (499)
++.--...+++|...|...+|+++++++. ++ +....+.++.+..+. +..+..+..++.... + ..-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 33344556677777777777777777765 22 224455566666555 445555555544311 1 1113
Q ss_pred hhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCC
Q 010837 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232 (499)
Q Consensus 153 l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 232 (499)
-..+ ...+..++|..+|+... -.....+.++ -..+++++|.++.+++. +..+|..+..++...|+
T Consensus 1056 A~Ia-----i~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1056 ANIA-----ISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHH-----HhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCC
Confidence 3333 66777777877777641 1111122222 26677888888887663 46678899999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC
Q 010837 233 VEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312 (499)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 312 (499)
+++|.+.|.+. .|...|..++..+.+. |+++++.+++...++.. +++...+.++.+|++.+++++..... ..
T Consensus 1121 ~kEAIdsYiKA--dD~say~eVa~~~~~l-GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~ 1192 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--DDPSSYMEVVQAANTS-GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NG 1192 (1630)
T ss_pred HHHHHHHHHhc--CChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hC
Confidence 99999999775 4555666677777666 88889999998877765 34334445888899998888655443 35
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHH
Q 010837 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392 (499)
Q Consensus 313 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 392 (499)
++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev 1256 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEV 1256 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHH
Confidence 56677778888999999999999999884 378889999999999999999888764 33678888
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc--CChH
Q 010837 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA--GKWD 470 (499)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~ 470 (499)
..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+..++.. ...|..+..+|++. ++..
T Consensus 1257 ~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH-~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH-hHHHHHHHHHHHhCCHHHHH
Confidence 888888999999988877644 356677788889999999999999999998887554 77887788887765 3444
Q ss_pred HHHHHHH
Q 010837 471 SVTELRE 477 (499)
Q Consensus 471 ~A~~~~~ 477 (499)
++.+.|.
T Consensus 1334 Ehlk~f~ 1340 (1630)
T 1xi4_A 1334 EHLELFW 1340 (1630)
T ss_pred HHHHHHH
Confidence 4444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.5e-15 Score=143.46 Aligned_cols=382 Identities=12% Similarity=-0.035 Sum_probs=226.5
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHh-----C---CCCChHHHHHHHHHHHcCCChhHHHHHhccCCC-----
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKT-----G---VKPNTNISIKLLILHLKCGALKYAGQMFDELPQ----- 108 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 108 (499)
......|+.+...+...|++++|++.|++.++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 445677899999999999999999999987653 1 123457889999999999999999998876531
Q ss_pred ------CChHHHHHHHHHHHh--CCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHHH
Q 010837 109 ------RTLSAYNYMIAGYLK--NGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179 (499)
Q Consensus 109 ------~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~ 179 (499)
....+|..+..++.. .+++++|++.|++..+. .|+.. .+..+..++.+ ....+..+.+...++..++
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~--l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYR--LDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH--HHHSCCCCCTHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH--hcCchHHHHHHHHHHHHhh
Confidence 234567666656555 45799999999999875 45543 33222222100 0344566778888888777
Q ss_pred cCCCCchhHHHHHHHHHHh----CCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCCh-h
Q 010837 180 CDVKADDVLYTALVDSYVK----GGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDI-V 249 (499)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~-~ 249 (499)
.. +.+...+..+...+.. .|++++|.+.+++... .+..++..+...|...|++++|.+.|++.. .|+. .
T Consensus 204 l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 282 (472)
T 4g1t_A 204 LN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY 282 (472)
T ss_dssp HC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred cC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH
Confidence 65 4455566666555544 4678899999988744 367788999999999999999999999887 4543 3
Q ss_pred hHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 010837 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYG 326 (499)
Q Consensus 250 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 326 (499)
.+..+-..+... ... ..... ...........+..+.|...|++..+ .+...+..+...+.
T Consensus 283 ~~~~lg~~y~~~-~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAK-VFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHH-HHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Confidence 333332222110 000 00000 00011111122335667777776553 35567788888888
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHH
Q 010837 327 KNGNPNQALELFCMMQECCVQPNYV--TFLGALS-ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 403 (499)
..|++++|++.|++..+....+... .+..+.. .....|+.++|+..|++.. .+.|+........ +
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~ 413 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------D 413 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------H
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------H
Confidence 9999999999998888754333221 1222222 2346788999999988887 3455433222222 2
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHH
Q 010837 404 QALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458 (499)
Q Consensus 404 ~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 458 (499)
.+.+++++... +.+..+|..+...|...|++++|++.|+++++.++.. +.+...
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~-p~a~~~ 469 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI-PSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcHhhc
Confidence 33334443332 3466788889999999999999999999999887765 444433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-17 Score=164.79 Aligned_cols=127 Identities=14% Similarity=0.145 Sum_probs=109.6
Q ss_pred CCChHHHHHHHHHHHcCCChhHHHHHhccCC-------CCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhH
Q 010837 77 KPNTNISIKLLILHLKCGALKYAGQMFDELP-------QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149 (499)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 149 (499)
..-..+|+++|.+||+.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445689999999999999999999997653 589999999999999999999999999999999999999999
Q ss_pred HHHhhhccccccCCcCcc-hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHH
Q 010837 150 SMILKASTCCRSNVPLPR-NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208 (499)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 208 (499)
+++|.++ ++.|.. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...++
T Consensus 204 ntLI~gl-----cK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCM-----GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHH-----HHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHH-----HhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999998 666664 78899999999999999999999998877775444443333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-15 Score=127.84 Aligned_cols=195 Identities=13% Similarity=0.039 Sum_probs=158.5
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010837 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357 (499)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 357 (499)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45677788889999999999999999998865 367789999999999999999999999998863 44667888889
Q ss_pred HHHccc-----------CcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHH
Q 010837 358 SACGHA-----------GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAAL 424 (499)
Q Consensus 358 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l 424 (499)
.++... |++++|...+++..+ +.| +...+..+..+|...|++++|+..|+++.+ ..+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 999999 999999999999983 356 677889999999999999999999998764 3678889999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
..++...|++++|+..++++++..|.. +..+..++.++.+.|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKD-LDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999988 8999999999999999999999988754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-14 Score=127.22 Aligned_cols=206 Identities=13% Similarity=0.073 Sum_probs=170.3
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-C-------hhHHHHHHHHHHhCCChh
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-N-------VFTWTSMIDGYGKNGNPN 332 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~-------~~~~~~l~~~~~~~g~~~ 332 (499)
|++++|...++.+.+.. .+...+..+..+|...|++++|...++++.+ | + ...|..+...+...|+++
T Consensus 19 ~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (258)
T 3uq3_A 19 RQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK 96 (258)
T ss_dssp TCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHH
Confidence 45555555555555555 5677788888889999999999999988764 2 1 578888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
+|...|++..+. .|+. ..+...|++++|...++.+.. ..| +...+..+...+...|++++|.+.|++
T Consensus 97 ~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 97 KTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999884 4553 345566889999999999883 345 567888899999999999999999998
Q ss_pred CCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 412 MPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 412 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+.. +.+..++..+...+...|++++|...++++++..+.. ...+..++.+|.+.|++++|.+.+++..+..
T Consensus 165 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 876 4567889999999999999999999999999998887 8899999999999999999999999887643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-13 Score=130.87 Aligned_cols=378 Identities=10% Similarity=0.022 Sum_probs=207.5
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCCh---hHHHHHhccCCCCChHHHHHHHHHHHhCC-
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGAL---KYAGQMFDELPQRTLSAYNYMIAGYLKNG- 125 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g- 125 (499)
.+...+.+.|++++|.++|++..+.|. ...+..|...|...|+. ++|...|++..+.++..+..|...+...|
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 355666788999999999999988873 33344556666667777 89999999888777777777777666655
Q ss_pred ----ChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCC
Q 010837 126 ----QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201 (499)
Q Consensus 126 ----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (499)
++++|++.|++..+.|... .+..+-..+...+ ..... ..+...+....+.| +......|...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~-~~~~~-~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYP-HSFPN-VNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCG-GGCTT-CCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCC-CCCCC-HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 6789999999988876333 4444444442111 11111 33444455444444 34455566666766664
Q ss_pred h----hHHHHHHHhccCCChHhHHHHHHHHHhCC---CHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHH
Q 010837 202 T----SYARIVFDMMLEKNVICSTSMISGFMSQG---FVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQ 274 (499)
Q Consensus 202 ~----~~A~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 274 (499)
+ +++..+++.....+...+..+...|...| +.++|++.|++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~-------------------------------- 204 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEA-------------------------------- 204 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------------
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH--------------------------------
Confidence 3 33444455555555556666666666666 55555555544
Q ss_pred HHHcccCCCchhHHHHHHHHHhc----CChHHHHHHHHhcCCCChhHHHHHHHH-H--HhCCChhHHHHHHHHHHHcCCC
Q 010837 275 LIKNVFFEDVKLGSALVDMYAKC----GKIDDARRVFDHMQQKNVFTWTSMIDG-Y--GKNGNPNQALELFCMMQECCVQ 347 (499)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~m~~~~~~ 347 (499)
..+.|. ++...+..|...|... +++++|...|++....++..+..+... + ...+++++|.+.|++..+.|
T Consensus 205 aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 205 GVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp HHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--
T ss_pred HHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--
Confidence 444332 1222223344444333 567777777776663355566666655 3 35677778888887777655
Q ss_pred CCHHHHHHHHHHHcccC-----cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCH
Q 010837 348 PNYVTFLGALSACGHAG-----LVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----AGSLEQALKFVLEMPEKPNS 418 (499)
Q Consensus 348 p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 418 (499)
+...+..+...|. .| ++++|...|++.. .-+...+..|...|.. ..++++|.++|++..+..+.
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 4555555555555 34 7788888877665 2244556666666655 34778888888777765555
Q ss_pred HHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 419 DVWAALLSSCRL----HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 419 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.....|...|.. ..|.++|..+++...+.|... .......+......++.++|.++.++..+
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~-a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE-ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH-HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 566666666653 457888888888887776543 22222222222223355666666665543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-13 Score=121.65 Aligned_cols=197 Identities=8% Similarity=-0.052 Sum_probs=171.4
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 360 (499)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45677788889999999999999998764 367788899999999999999999999998863 44677888899999
Q ss_pred cccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMA 437 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 437 (499)
...|++++|.++++++.. .+..| +...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999984 23455 567788899999999999999999998776 34678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
...++++.+..+.. ...+..++.++.+.|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQN-ARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999988876 7889999999999999999999999998754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-14 Score=124.36 Aligned_cols=223 Identities=11% Similarity=-0.018 Sum_probs=165.2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhccC--CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChh
Q 010837 186 DVLYTALVDSYVKGGKTSYARIVFDMMLE--KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIE 263 (499)
Q Consensus 186 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 263 (499)
...+..+...+...|++++|++.|++..+ .+...|..+...+...|++++|.+.+++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~------------------- 65 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAV------------------- 65 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHH-------------------
Confidence 34677778888888888888888877633 456677777778888888888877776543
Q ss_pred hHHHHHHHHHHHHHcccC--CC----chhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHH
Q 010837 264 TARKALEVHCQLIKNVFF--ED----VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337 (499)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 337 (499)
+.... ++ ..++..+...|.+.|++++|...|+++.+.+.. ...+...|++++|...
T Consensus 66 -------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 66 -------------EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKK 127 (258)
T ss_dssp -------------HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHH
T ss_pred -------------HhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHH
Confidence 11110 11 355667777888888888888888877642111 2345666788888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C
Q 010837 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--K 415 (499)
Q Consensus 338 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 415 (499)
++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..+|...|++++|++.|+++.. +
T Consensus 128 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 128 AEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 88887742 3345567778888888899999999999888431 23577888888889999999999999988776 4
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 416 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
.+..+|..+...+...|++++|.+.++++.+..
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 457888888899999999999999999988876
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-13 Score=117.69 Aligned_cols=198 Identities=10% Similarity=-0.023 Sum_probs=169.8
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 355677788889999999999999998764 357788889999999999999999999998763 4567788889999
Q ss_pred Hccc-CcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHH
Q 010837 360 CGHA-GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVE 435 (499)
Q Consensus 360 ~~~~-~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 435 (499)
+... |++++|...++.+.+ .+..| +...+..+..++...|++++|++.++++.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999984 33444 467888899999999999999999998876 345788999999999999999
Q ss_pred HHHHHHHHHHhcCC-CCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 436 MANIAANEIFKLNA-NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 436 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+|.+.++++.+..+ .. ...+..+...+...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQ-ADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999888 55 7888888899999999999999999987643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.1e-14 Score=122.44 Aligned_cols=198 Identities=11% Similarity=0.102 Sum_probs=152.6
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010837 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358 (499)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 358 (499)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455677778888999999999999998864 366788888999999999999999999988763 446778888889
Q ss_pred HHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHH
Q 010837 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999988432 23677888899999999999999999998776 4567888899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
|...++++.+..+.. ..++..++.+|.+.|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGH-ADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCccc-HHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999988876 7889999999999999999999999988743
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=122.49 Aligned_cols=238 Identities=11% Similarity=-0.033 Sum_probs=172.1
Q ss_pred HhCCChhHHHHHHHhccCC-------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHH
Q 010837 197 VKGGKTSYARIVFDMMLEK-------NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269 (499)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 269 (499)
...|++++|++.|+++.+. +..+|..+...+...|++++|.+.|++..
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al------------------------- 70 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL------------------------- 70 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------------
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-------------------------
Confidence 3456677777777766542 24456666666666666666666665443
Q ss_pred HHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 010837 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346 (499)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (499)
+... .+...+..+..+|...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.
T Consensus 71 -------~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-- 140 (275)
T 1xnf_A 71 -------AIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-- 140 (275)
T ss_dssp -------HHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred -------HcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 3221 2455667778888888999999999888764 36778888999999999999999999999885
Q ss_pred CCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-----CHHH
Q 010837 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK-P-----NSDV 420 (499)
Q Consensus 347 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----~~~~ 420 (499)
.|+.......+..+...|++++|...++...... +++...+ .++..+...++.++|.+.+++.... | +..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 141 DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 4544444444555567799999999998877442 3343444 4677788888999999999988873 2 2578
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
+..+...+...|++++|...++++++..|.. +.....++...|++++|.+.+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHN----FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT----CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCchh----HHHHHHHHHHHHHHHhhHHHH
Confidence 8889999999999999999999999887644 344567788889999988776
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-12 Score=114.44 Aligned_cols=223 Identities=12% Similarity=-0.009 Sum_probs=160.7
Q ss_pred ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHH
Q 010837 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295 (499)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (499)
+..++..+...+...|++++|.+.|++..+++ +...+..+...|.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~~~ 49 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----------------------------------ENSGCFNLGVLYY 49 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------------------------------CHHHHHHHHHHHH
Confidence 34455566666666666666666665543322 2234445556666
Q ss_pred h----cCChHHHHHHHHhcCC-CChhHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc----
Q 010837 296 K----CGKIDDARRVFDHMQQ-KNVFTWTSMIDGYGK----NGNPNQALELFCMMQECCVQPNYVTFLGALSACGH---- 362 (499)
Q Consensus 296 ~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---- 362 (499)
. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 50 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 50 QGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSS
T ss_pred cCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCc
Confidence 6 7777777777777654 356677777777777 888888888888877754 56677777777777
Q ss_pred cCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCH
Q 010837 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----AGSLEQALKFVLEMPEKPNSDVWAALLSSCRL----HDDV 434 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 434 (499)
.+++++|...|++..+. + +...+..+...|.. .+++++|++.|++..+..+...+..+...|.. .+++
T Consensus 127 ~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred ccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccH
Confidence 78888888888887732 3 44566677777777 78888888888877765667777788888888 8888
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 010837 435 EMANIAANEIFKLNANDRPGAYVALSNTLAA----AGKWDSVTELREKMKLRG 483 (499)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 483 (499)
++|.+.++++.+.++ ...+..+..+|.. .+++++|.+.+++..+.|
T Consensus 203 ~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888888887754 5677888888888 888888888888887765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-12 Score=115.76 Aligned_cols=225 Identities=12% Similarity=-0.011 Sum_probs=177.3
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhccCC-ChHhHHHHHHHHHh----CCCHHHHHHHHHhcCCCChhhHHHHHHHHh
Q 010837 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMS----QGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259 (499)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~ 259 (499)
+...+..+...+...|++++|++.|++..++ +..++..+...|.. .+++++|.+.|++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------------- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------------- 71 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-------------
Confidence 5667888999999999999999999998776 56778888888888 88888888877754321
Q ss_pred cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh----cCChHHHHHHHHhcCC-CChhHHHHHHHHHHh----CCC
Q 010837 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK----CGKIDDARRVFDHMQQ-KNVFTWTSMIDGYGK----NGN 330 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~ 330 (499)
+ +...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .++
T Consensus 72 -------------------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~ 129 (273)
T 1ouv_A 72 -------------------N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRD 129 (273)
T ss_dssp -------------------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCC
T ss_pred -------------------C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccC
Confidence 1 33445556666777 7888888888887664 366777888888888 889
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc----cCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----cCCH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGH----AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----AGSL 402 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 402 (499)
+++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+...|.. .+++
T Consensus 130 ~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 130 FKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred HHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccH
Confidence 999999999888865 55666777777776 88999999999988833 2 45667788888888 8999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCC
Q 010837 403 EQALKFVLEMPEKPNSDVWAALLSSCRL----HDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 403 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 451 (499)
++|++.|++..+..+...+..+...|.. .+++++|.+.++++.+.++..
T Consensus 203 ~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 203 KEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 9999999888765557788888888888 899999999999998887643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.1e-13 Score=118.67 Aligned_cols=193 Identities=8% Similarity=-0.075 Sum_probs=102.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC--CCh----hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQ--KNV----FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
.+..+..+|...|++++|...++++.+ ++. ..|..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 117 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSY 117 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHH
Confidence 444555555555666666555555443 111 225555556666666666666666655532 2234455556666
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC---
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD--- 433 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~--- 433 (499)
|...|++++|...+++.. ...| +...+..+...+...+++++|.+.|+++.+ +.+...+..+...+...|+
T Consensus 118 ~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 194 (272)
T 3u4t_A 118 FYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTK 194 (272)
T ss_dssp HHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchh
Confidence 666666666666666655 2233 344455555222333466666666665554 2234555555555555555
Q ss_pred HHHHHHHHHHHHhcC---CCCC----CchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 434 VEMANIAANEIFKLN---ANDR----PGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 434 ~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
+++|...++++.+.. +.++ ..+|..++..|.+.|++++|.+.+++..+.
T Consensus 195 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp SCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555666665555432 2110 135555666666666666666666666553
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=125.42 Aligned_cols=190 Identities=9% Similarity=-0.054 Sum_probs=149.8
Q ss_pred CchhHHHHHHHHHhcC---ChHHHHHHHHhcCCC---ChhHHHHHHHHHHhC----CChhHHHHHHHHHHHcCCCCCHHH
Q 010837 283 DVKLGSALVDMYAKCG---KIDDARRVFDHMQQK---NVFTWTSMIDGYGKN----GNPNQALELFCMMQECCVQPNYVT 352 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~ 352 (499)
++..+..|...|.+.| +.++|...|++..+. +...+..+...|... +++++|.+.|++.. .| +...
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a 250 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPAS 250 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHH
Confidence 4447778888899999 899999999987653 444446677777654 79999999999987 43 4445
Q ss_pred HHHHHHH-H--cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHHhCCCCCCHHHHHHH
Q 010837 353 FLGALSA-C--GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG-----SLEQALKFVLEMPEKPNSDVWAAL 424 (499)
Q Consensus 353 ~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~l 424 (499)
+..+... + ...++.++|...|++.. +.| +...+..|...|. .| ++++|+++|++.. +.+...+..|
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~L 324 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYL 324 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHH
Confidence 5555554 3 56899999999999998 434 5566777887777 55 9999999999999 7788888888
Q ss_pred HHHHhh----cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh----cCChHHHHHHHHHHHhCCCc
Q 010837 425 LSSCRL----HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA----AGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 425 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 485 (499)
...|.. ..++++|...|++..+.|. +.....|..+|.. ..+.++|...++...+.|..
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 888776 4499999999999988764 5688889998875 45899999999998887743
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-13 Score=120.02 Aligned_cols=241 Identities=13% Similarity=0.003 Sum_probs=151.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhh
Q 010837 188 LYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET 264 (499)
Q Consensus 188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 264 (499)
.+......+...|++++|++.|++..+. +...+..+...+...|++++|.+.+++..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-------------------- 64 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF-------------------- 64 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------------
Confidence 3444555666666666666666665432 34455666666666666666666655443
Q ss_pred HHHHHHHHHHHHHcccCCC--chhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 265 ARKALEVHCQLIKNVFFED--VKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
+....++ ...|..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++
T Consensus 65 ------------~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 65 ------------SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp ------------TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred ------------hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3111111 12356666777777777777777777653 355677777777777888888888777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC---HHHHHHHHHhCCC-
Q 010837 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS---LEQALKFVLEMPE- 414 (499)
Q Consensus 340 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~- 414 (499)
+..+. .+.+...+..+...+...+++++|.+.|+++.+. .| +...+..+..++...|+ +++|...++++.+
T Consensus 133 ~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 133 KQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 77664 2334555555552333345888888888877733 34 45666667777777676 6666666665544
Q ss_pred ---CCC------HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 415 ---KPN------SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 415 ---~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
.|+ ..+|..+...|...|++++|.+.++++++..|.. +.....+......
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN-KKAIDGLKMKLEH 267 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHC-----
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH-HHHHHHhhhhhcc
Confidence 133 2567778888888999999999999999988877 6666555554443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-13 Score=128.16 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=47.6
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHHHhccC--C-C----hHhHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLE--K-N----VICSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 184 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
.....+......+...|++++|+..|++..+ + + ..++..+...+...|++++|...+++..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4455666777888999999999999988754 2 2 3567888888999999999999887653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=130.04 Aligned_cols=268 Identities=11% Similarity=0.033 Sum_probs=177.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhccC--C-Ch----HhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhc
Q 010837 188 LYTALVDSYVKGGKTSYARIVFDMMLE--K-NV----ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260 (499)
Q Consensus 188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 260 (499)
.+..+...+...|++++|++.|++..+ + +. ..|..+...|...|++++|.+.|++...
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 114 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT--------------- 114 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------
Confidence 445567788889999999999988754 2 22 4677888888888898888888875431
Q ss_pred ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---------ChhHHHHHHHHHHhCCC-
Q 010837 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---------NVFTWTSMIDGYGKNGN- 330 (499)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~g~- 330 (499)
+.... .........+..+...|...|++++|...|+++.+. ...++..+...|...|+
T Consensus 115 ----------~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (411)
T 4a1s_A 115 ----------LAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKH 182 (411)
T ss_dssp ----------HHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHc--cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcc
Confidence 10000 000112334555666677777777777777665431 23456667777777777
Q ss_pred ----------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC----
Q 010837 331 ----------------PNQALELFCMMQEC----CVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK---- 385 (499)
Q Consensus 331 ----------------~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---- 385 (499)
+++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+...-.++
T Consensus 183 ~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (411)
T 4a1s_A 183 LGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262 (411)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence 77777777665432 1111 2235666777788888888888888777632111111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----C
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE----KP----NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-----R 452 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~ 452 (499)
...+..+...|...|++++|.+.+++... .. ...++..+...+...|++++|.+.++++++..... .
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 342 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHH
Confidence 23677778888888888888888877655 11 14567778888888888888888888887653322 1
Q ss_pred CchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 453 PGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
..++..++.+|.+.|++++|.+.+++..+.
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 347778888888888888888888876543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=7e-13 Score=123.36 Aligned_cols=241 Identities=10% Similarity=0.025 Sum_probs=172.3
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCC-HHHHHHHHHhcCCCChhhHHHHHHHHhcCh
Q 010837 187 VLYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGF-VEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262 (499)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~ 262 (499)
..|..+...+.+.|++++|++.+++..+. +..+|+.+...+...|+ +++|+..|++..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al------------------ 159 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII------------------ 159 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH------------------
Confidence 45666677777777777777777776442 45566666666666664 666666665443
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
+... -+...|..+..++.+.|++++|+..|+++.+ .+...|..+..++.+.|++++|+..++
T Consensus 160 --------------~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 160 --------------EEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD 224 (382)
T ss_dssp --------------HHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred --------------HHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3222 1445666677778888888888888888764 367788888888888899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHcc-cCcHHHH-----HHHHHHchHhcCCCC-ChhHHHHHHHHHHhcC--CHHHHHHHHH
Q 010837 340 MMQECCVQPNYVTFLGALSACGH-AGLVDKG-----REIFESMERDYSMKP-KMEHYACMVDLLGRAG--SLEQALKFVL 410 (499)
Q Consensus 340 ~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~ 410 (499)
++.+.. +-+...|+.+..++.. .|..++| +..+++..+ +.| +...|..+..++...| ++++|++.+.
T Consensus 225 ~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~ 300 (382)
T 2h6f_A 225 QLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLL 300 (382)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHH
Confidence 888863 3466778888888877 5554666 477777773 356 5677888888888877 5888888888
Q ss_pred hCCC-CCCHHHHHHHHHHHhhcC--------C-HHHHHHHHHHH-HhcCCCCCCchhHHHHHHHHh
Q 010837 411 EMPE-KPNSDVWAALLSSCRLHD--------D-VEMANIAANEI-FKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 411 ~~~~-~~~~~~~~~l~~~~~~~~--------~-~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 465 (499)
++.. ..+...+..++..|.+.| + .++|+++++++ .+.+|.. ...|..++..+..
T Consensus 301 ~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r-~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 301 DLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR-KEYWRYIGRSLQS 365 (382)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG-HHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHH
Confidence 7732 345677888888887763 2 58899999998 7887766 6677777766653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-12 Score=111.73 Aligned_cols=201 Identities=14% Similarity=0.035 Sum_probs=133.6
Q ss_pred CCchhHHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCCh-hhHHHHHH
Q 010837 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDI-VVYNAMIE 256 (499)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~-~~~~~ll~ 256 (499)
+++...+..+...+.+.|++++|+..|++..+. +...+..+...+.+.|++++|...|++.. .|+. ..+..+-.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 566777888888888999999999998887553 56788888888888888888888888765 3432 22222222
Q ss_pred HHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhH
Q 010837 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~ 333 (499)
.+.... ... .. .+...|++++|...|++..+ | +...|..+..++...|++++
T Consensus 82 ~~~~~~--------------~~~--~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 82 AYVALY--------------RQA--ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHH--------------HTC--SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhh--------------hhh--hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH
Confidence 211100 000 00 01223888888888887764 3 56778888888888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 010837 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEM 412 (499)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (499)
|+..|++..+.. .+...+..+..++...|++++|...|+++.+. .| +...+..+...+.+.|++++|++.|++.
T Consensus 137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999888876 67788888888888999999999999988843 45 6677888888888999999998888876
Q ss_pred C
Q 010837 413 P 413 (499)
Q Consensus 413 ~ 413 (499)
.
T Consensus 212 ~ 212 (217)
T 2pl2_A 212 H 212 (217)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.6e-13 Score=122.19 Aligned_cols=268 Identities=13% Similarity=0.042 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhccC--C-C----hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhc
Q 010837 188 LYTALVDSYVKGGKTSYARIVFDMMLE--K-N----VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260 (499)
Q Consensus 188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 260 (499)
.+......+...|++++|...|++..+ + + ...+..+...+...|++++|.+.+++...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------- 71 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT--------------- 71 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------
Confidence 344556678888999999998888744 2 2 35677788888888888888888775421
Q ss_pred ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhCCC-
Q 010837 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----KN----VFTWTSMIDGYGKNGN- 330 (499)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~- 330 (499)
+.... .........+..+...|...|++++|...+++..+ ++ ..++..+...+...|+
T Consensus 72 ----------~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 139 (338)
T 3ro2_A 72 ----------LARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 139 (338)
T ss_dssp ----------HHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------Hhhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcc
Confidence 11100 00001233556677778888888888888877653 12 3367777788888888
Q ss_pred -------------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC--
Q 010837 331 -------------------PNQALELFCMMQEC----CVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-- 384 (499)
Q Consensus 331 -------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-- 384 (499)
+++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+...-.+
T Consensus 140 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp SSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 88888888776432 1111 134677777888889999999999888773211111
Q ss_pred --ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---
Q 010837 385 --KMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND--- 451 (499)
Q Consensus 385 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 451 (499)
...++..+...+...|++++|.+.+++... .++ ..++..+...+...|++++|...++++.+..+..
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 233778888889999999999999988765 122 4577888889999999999999999988754332
Q ss_pred --CCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 452 --RPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 452 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
...++..++.+|.+.|++++|.+.+++..+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1347888999999999999999999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-12 Score=108.72 Aligned_cols=164 Identities=13% Similarity=0.055 Sum_probs=133.7
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACM 392 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 392 (499)
+...|..+...|...|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...+...... .| +...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 45677888888888888888888888887753 345677888888888888888888888888733 33 55667777
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChH
Q 010837 393 VDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 470 (499)
...+...++++.|.+.+.+... +.+...+..+...+.+.|++++|++.++++++.+|.. +.++..++.+|.+.|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHH
Confidence 7888888888888888887765 4567788888888999999999999999999988877 888999999999999999
Q ss_pred HHHHHHHHHHhC
Q 010837 471 SVTELREKMKLR 482 (499)
Q Consensus 471 ~A~~~~~~~~~~ 482 (499)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-12 Score=114.40 Aligned_cols=193 Identities=10% Similarity=-0.015 Sum_probs=144.9
Q ss_pred cchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHHH
Q 010837 45 ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAGY 121 (499)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~ 121 (499)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++. ..+...|..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 5677888889999999999999999999886 5577888999999999999999999998765 34677889999999
Q ss_pred HhCCChhhHHHHHHHHHHcCCCCC-hhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCC
Q 010837 122 LKNGQVEESLSLVRKLVSSGERPD-GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200 (499)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (499)
...|++++|++.++++.+.+..|+ ...+..+...+ ...++.+.|...+....+.. +.+...+..+...+...|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS-----LQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcC
Confidence 999999999999999887333443 34455555555 56667777777777766654 334556666777777777
Q ss_pred ChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 201 KTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 201 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
++++|.+.++...+. +...+..+...+...|++++|.+.++++.
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777766442 44556666666777777777777766654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=120.79 Aligned_cols=217 Identities=15% Similarity=0.003 Sum_probs=176.4
Q ss_pred hhhHHHHHHHHHHHHHcccC---CCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHH
Q 010837 262 IETARKALEVHCQLIKNVFF---EDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQAL 335 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 335 (499)
.+++++|...++.+.+.... .+...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 37888899999988886421 2456788899999999999999999999874 36789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 010837 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE- 414 (499)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 414 (499)
+.|++..+.. +.+...+..+..++...|++++|...++++.+. .|+.......+..+...|++++|...+++...
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998863 446788899999999999999999999999843 45444444455556778999999999977655
Q ss_pred -CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---CCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 415 -KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND---RPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 415 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+++...+ .++..+...++.++|.+.++++.+..+.. +...+..++.+|.+.|++++|...+++..+.+
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 174 SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 3333344 47777888899999999999988765532 14788999999999999999999999998754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-13 Score=130.13 Aligned_cols=209 Identities=12% Similarity=0.032 Sum_probs=180.3
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCCh-HHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI-DDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELF 338 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (499)
+..+++...++...... +.+...+..+...|...|++ ++|...|+++.+ .+...|..+...|...|++++|.+.|
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34556666666554432 24667888899999999999 999999998864 35789999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHccc---------CcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhc--------C
Q 010837 339 CMMQECCVQPNYVTFLGALSACGHA---------GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRA--------G 400 (499)
Q Consensus 339 ~~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------~ 400 (499)
++..+. .|+...+..+..++... |++++|...+++..+. .| +...|..+..+|... |
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 999985 57788899999999999 9999999999999843 45 678899999999998 9
Q ss_pred CHHHHHHHHHhCCC-CC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHH
Q 010837 401 SLEQALKFVLEMPE-KP----NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475 (499)
Q Consensus 401 ~~~~a~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (499)
++++|++.|++... .| +...|..+..+|...|++++|.+.|+++.+..|.. ...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887 45 78899999999999999999999999999999988 88999999999999999999875
Q ss_pred HHH
Q 010837 476 REK 478 (499)
Q Consensus 476 ~~~ 478 (499)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-13 Score=124.75 Aligned_cols=203 Identities=13% Similarity=0.085 Sum_probs=166.7
Q ss_pred CchhHHHHHHHHHhcCC-hHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGK-IDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 358 (499)
+...|+.+..++.+.|+ +++|+..|+++.+ .+...|..+..++...|++++|+..|+++.+.. +-+...|..+..
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~ 208 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQW 208 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHH
Confidence 44566777888889997 9999999999875 377899999999999999999999999999863 457788999999
Q ss_pred HHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHh-cCCHHHH-----HHHHHhCCC--CCCHHHHHHHHHHHh
Q 010837 359 ACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGR-AGSLEQA-----LKFVLEMPE--KPNSDVWAALLSSCR 429 (499)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~--~~~~~~~~~l~~~~~ 429 (499)
++...|++++|+..++++.+ +.| +...|+.+..++.+ .|..++| ++.|++... +.+...|..+...+.
T Consensus 209 ~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~ 285 (382)
T 2h6f_A 209 VIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999999994 356 67889999999998 6665777 477877765 446788999999998
Q ss_pred hcC--CHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC---------ChHHHHHHHHHH-HhCCCccCcccccc
Q 010837 430 LHD--DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG---------KWDSVTELREKM-KLRGVLKDTGCSWV 493 (499)
Q Consensus 430 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~~ 493 (499)
..| ++++|.+.++++ +..+.. ...+..++.+|.+.| .+++|.++++++ .+ +.|.-...|.
T Consensus 286 ~~g~~~~~~a~~~~~~~-~~~p~~-~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~ 357 (382)
T 2h6f_A 286 DRGLSKYPNLLNQLLDL-QPSHSS-PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWR 357 (382)
T ss_dssp TTCGGGCHHHHHHHHHH-TTTCCC-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHH
T ss_pred ccCccchHHHHHHHHHh-ccCCCC-HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHH
Confidence 888 689999999988 666665 788899999999874 358999999998 55 4555444454
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.3e-13 Score=116.33 Aligned_cols=177 Identities=11% Similarity=0.015 Sum_probs=142.2
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
+...+..+...|.+.|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTV 134 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345566677778888888888888887764 366788888888999999999999999988763 4567788888888
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHH
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMA 437 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 437 (499)
+...|++++|...++++.+.. +.+...+..+...+...|++++|++.|+++.. +.+..++..+...+...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999988431 23677888889999999999999999988766 35678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 438 NIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
.+.++++.+..+.. ...+..+....
T Consensus 213 ~~~~~~~~~~~p~~-~~~~~~~~~l~ 237 (243)
T 2q7f_A 213 LEMLDKAIDIQPDH-MLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHCTTC-HHHHHHHTC--
T ss_pred HHHHHHHHccCcch-HHHHHHHHHHH
Confidence 99999999988877 55655554443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=106.94 Aligned_cols=199 Identities=11% Similarity=0.018 Sum_probs=152.1
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh
Q 010837 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296 (499)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (499)
...|..+...+...|++++|.+.|++. .+... .+...+..+...|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~--------------------------------~~~~~-~~~~~~~~l~~~~~~ 54 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDA--------------------------------LKSDP-KNELAWLVRAEIYQY 54 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------------------HHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH--------------------------------HHhCc-cchHHHHHHHHHHHH
Confidence 445566666666666666666666544 33221 234456667777888
Q ss_pred cCChHHHHHHHHhcCC---CChhHHHHHHHHHHhC-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHcccCcHHHHHH
Q 010837 297 CGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKN-GNPNQALELFCMMQECCVQPN-YVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 297 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
.|++++|...++++.+ .+...+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|..
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 55 LKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887753 3667788888889999 999999999999887333343 5677888888999999999999
Q ss_pred HHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 372 IFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--K-PNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 372 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
.++++.+. .| +...+..+...+...|++++|.+.++++.. + .+...+..+...+...|+.+.|..+++.+.+.
T Consensus 135 ~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 135 YLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99998843 34 577888899999999999999999988776 4 56777888888888999999999999998888
Q ss_pred CCCC
Q 010837 448 NAND 451 (499)
Q Consensus 448 ~~~~ 451 (499)
.|..
T Consensus 212 ~p~~ 215 (225)
T 2vq2_A 212 FPYS 215 (225)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 7765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-11 Score=116.44 Aligned_cols=230 Identities=10% Similarity=-0.024 Sum_probs=147.2
Q ss_pred HHHHHHhCCChhHHHHHHHhccCC---------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcCh
Q 010837 192 LVDSYVKGGKTSYARIVFDMMLEK---------NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262 (499)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~ 262 (499)
....+...|++++|++.|++..+. ...++..+...|...|++++|.+.+.+..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al------------------ 170 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY------------------ 170 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------
Confidence 556677888999998888887542 23567788888888888888888776532
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhCCChhH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----KN----VFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~ 333 (499)
+++..... .......+++.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++
T Consensus 171 -------~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 171 -------EIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp -------HHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------HHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 11111000 0001123566677788888888888888877653 11 2367777788888888888
Q ss_pred HHHHHHHHHHc----CC-CCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCC--CC-ChhHHHHHHHHHHhcCC---H
Q 010837 334 ALELFCMMQEC----CV-QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM--KP-KMEHYACMVDLLGRAGS---L 402 (499)
Q Consensus 334 a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~~~---~ 402 (499)
|.+.+++..+. +. +....++..+..++.+.|++++|...+++..+-..- .| ....+..+...|...|+ +
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 88888777652 22 233456777777788888888888877776632110 11 12234556666667777 6
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 403 EQALKFVLEMPEKPN-SDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 403 ~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
++|+.++++....|+ ...+..+...|...|++++|.+.++++.+.
T Consensus 323 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 323 QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777777777654222 335556666677777777777777766653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-12 Score=122.15 Aligned_cols=296 Identities=12% Similarity=0.036 Sum_probs=191.2
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHH
Q 010837 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189 (499)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (499)
....+......+...|++++|+..|++..+.+ |+.... -...+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~-----------------------------------~~~~~ 50 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT-----------------------------------LSAIY 50 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH-----------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHH-----------------------------------HHHHH
Confidence 44456667777888888888888888887752 211000 02346
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccCC---------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhc
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLEK---------NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 260 (499)
..+...|...|++++|...+++..+. ...++..+...+...|++++|...+++..+-
T Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------- 116 (406)
T 3sf4_A 51 SQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI-------------- 116 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------
Confidence 66778888899999999888876331 2457788888899999999999888765410
Q ss_pred ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCC--------------------hHHHHHHHHhcCC-----C--
Q 010837 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK--------------------IDDARRVFDHMQQ-----K-- 313 (499)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~-----~-- 313 (499)
..... .......++..+...|...|+ +++|...+++..+ .
T Consensus 117 -----------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 183 (406)
T 3sf4_A 117 -----------SRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR 183 (406)
T ss_dssp -----------HHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------HHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 00000 000012234444555555555 5556555554432 1
Q ss_pred --ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC--
Q 010837 314 --NVFTWTSMIDGYGKNGNPNQALELFCMMQECCV-QPN----YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-- 384 (499)
Q Consensus 314 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-- 384 (499)
....+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-..
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 234566777777788888888888877654210 111 23667777788888888888888887763211111
Q ss_pred --ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---
Q 010837 385 --KMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND--- 451 (499)
Q Consensus 385 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 451 (499)
...++..+...|...|++++|.+.+++... .++ ..++..+...|...|++++|.+.++++.+.....
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 343 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK 343 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 145677788888888998888888887665 122 4577788888889999999999998887643221
Q ss_pred --CCchhHHHHHHHHhcCCh
Q 010837 452 --RPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 452 --~~~~~~~l~~~~~~~g~~ 469 (499)
...++..+..++...|+.
T Consensus 344 ~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 344 SGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHhhHh
Confidence 145677788888887765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-10 Score=113.28 Aligned_cols=423 Identities=10% Similarity=0.028 Sum_probs=285.1
Q ss_pred CChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCC---hhhHHH
Q 010837 59 DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQ---VEESLS 132 (499)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~a~~ 132 (499)
....+-...++..+... +-|...|..++..+.+.+.++.+..+|+.+.. .....|...+..-.+.|+ ++.+.+
T Consensus 46 ~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 44566666777777776 67999999999999999999999999998873 466778888888888888 999999
Q ss_pred HHHHHHHcC-CCCChhhHHHHhhhccccccCC---cCcchhHHHHHHHHHH-cCC-CCc-hhHHHHHHHHHHh-------
Q 010837 133 LVRKLVSSG-ERPDGYTFSMILKASTCCRSNV---PLPRNLGRMVHAQILK-CDV-KAD-DVLYTALVDSYVK------- 198 (499)
Q Consensus 133 ~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~---~~~~~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~------- 198 (499)
+|++..... ..|+...|..-+.-....++.. .+..+...++|+..+. .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998763 2478877776665432111111 1123445577776554 466 554 4678777776543
Q ss_pred --CCChhHHHHHHHhccCC---Ch-HhH---HHHHHHHH----------hCCCHHHHHHHHHhcC-------C-------
Q 010837 199 --GGKTSYARIVFDMMLEK---NV-ICS---TSMISGFM----------SQGFVEDAEEIFRKTV-------E------- 245 (499)
Q Consensus 199 --~g~~~~A~~~~~~~~~~---~~-~~~---~~l~~~~~----------~~g~~~~a~~~~~~~~-------~------- 245 (499)
.++++.+.++|+....- +. .+| ..+...+. ...+++.|...+.++. +
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 34567888999888652 11 222 22222210 0112334444444321 1
Q ss_pred -------C--C------hhhHHHHHHHHhcCh------hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHH
Q 010837 246 -------K--D------IVVYNAMIEGYSISI------ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304 (499)
Q Consensus 246 -------~--~------~~~~~~ll~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 304 (499)
| + ...|...+.---... ...+.+..+|++.+..-. -...+|-..+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 0 012333332221111 012345567777777533 36677777888888889999996
Q ss_pred -HHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHH
Q 010837 305 -RVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECC---------VQPN------------YVTFLGALSA 359 (499)
Q Consensus 305 -~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~ll~~ 359 (499)
.+|++... | +...|...+....+.|++++|.++|+++.+.. -.|+ ...|...+..
T Consensus 364 r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 364 TKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 99998764 3 55667788888889999999999999987641 0132 2357777777
Q ss_pred HcccCcHHHHHHHHHHchHh-cCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHH
Q 010837 360 CGHAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLGRA-GSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVE 435 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 435 (499)
..+.|+.+.|.++|..+.+. ... ...+|...+..-.+. ++.+.|.++|+...+ +.+...|...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~--~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLV--TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGS--CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 77889999999999999843 122 233444333333344 458999999998887 446667778888888899999
Q ss_pred HHHHHHHHHHhcCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 436 MANIAANEIFKLNAND--RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 436 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
.|..+|++++...+.+ ....|...+..-.+.|+.+.+.++.+++.+.-..
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999887732 2567888888889999999999999999876543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.8e-12 Score=104.60 Aligned_cols=164 Identities=12% Similarity=0.019 Sum_probs=143.6
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
+..+|..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 566788899999999999999999999874 367889999999999999999999999998763 4466777788888
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHH
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
+...++++.|...+...... .| +...+..+..+|.+.|++++|++.|++..+ +.+..+|..+..++.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 89999999999999998843 44 677889999999999999999999998876 4567899999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 010837 437 ANIAANEIFKLNAN 450 (499)
Q Consensus 437 a~~~~~~~~~~~~~ 450 (499)
|++.|+++++.+|.
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.2e-11 Score=108.22 Aligned_cols=177 Identities=9% Similarity=0.083 Sum_probs=102.0
Q ss_pred HHHHHHHHhcCC---C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHcccCcHHHHHHHHH
Q 010837 301 DDARRVFDHMQQ---K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN-YV-TFLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 301 ~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
++|..+|++..+ | +...|..++..+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666666543 2 3445666666666666666666666666652 332 22 56666666666666666666666
Q ss_pred HchHhcCCCC-ChhHHHHHHHHHH-hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC--
Q 010837 375 SMERDYSMKP-KMEHYACMVDLLG-RAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN-- 448 (499)
Q Consensus 375 ~~~~~~~~~p-~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 448 (499)
+..+ ..| +...|...+.... ..|++++|.++|+++.+ +.+...|..++..+.+.|++++|..+|+++++..
T Consensus 159 ~a~~---~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 159 KARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHh---cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 6662 222 3333433322211 24666666666666654 3345566666666666666666666666666642
Q ss_pred -CCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 449 -ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 449 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
|......|..++..+.+.|+.++|..+++++.+.
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2112445666666666666666666666666543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-12 Score=119.79 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHhccCCC--C-Ch----HHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhh
Q 010837 82 ISIKLLILHLKCGALKYAGQMFDELPQ--R-TL----SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154 (499)
Q Consensus 82 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 154 (499)
.+..+...+...|++++|...|++..+ | +. ..|..+...+...|++++|++.+++..+.. .
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------~ 117 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------K 117 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------H
Confidence 334455556666666666666665442 2 22 245566666666666666666666654320 0
Q ss_pred hccccccCCcCcchhHHHHHHHHHHcCC-CCchhHHHHHHHHHHhCCChhHHHHHHHhccCC---------ChHhHHHHH
Q 010837 155 ASTCCRSNVPLPRNLGRMVHAQILKCDV-KADDVLYTALVDSYVKGGKTSYARIVFDMMLEK---------NVICSTSMI 224 (499)
Q Consensus 155 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~ 224 (499)
+.+- +.....+..+...|...|++++|.+.+++..+. ...++..+.
T Consensus 118 ------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 118 ------------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp ------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ------------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 0000 112345666777777788888887777765431 123555566
Q ss_pred HHHHhCCC
Q 010837 225 SGFMSQGF 232 (499)
Q Consensus 225 ~~~~~~g~ 232 (499)
..|...|+
T Consensus 174 ~~~~~~g~ 181 (411)
T 4a1s_A 174 NVYHAKGK 181 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHcCc
Confidence 66666666
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-09 Score=108.91 Aligned_cols=407 Identities=9% Similarity=0.016 Sum_probs=271.1
Q ss_pred cCCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCC---hhHHHHHhccCCC-----CC
Q 010837 39 LSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGA---LKYAGQMFDELPQ-----RT 110 (499)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~-----~~ 110 (499)
..+|.+..+|..++..+...+.++.+..+|+.+... ++.....|...+..-.+.++ ++.+..+|++... |+
T Consensus 60 ~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~s 138 (679)
T 4e6h_A 60 EEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNND 138 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCC
T ss_pred HHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCC
Confidence 445789999999999999999999999999999987 47788899999999889898 9999999998653 78
Q ss_pred hHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHc-CC-CCCh-hhHHHHhhhcccccc----CCcCcchhHHHHHH
Q 010837 111 LSAYNYMIAGYLKNGQV--------EESLSLVRKLVSS-GE-RPDG-YTFSMILKASTCCRS----NVPLPRNLGRMVHA 175 (499)
Q Consensus 111 ~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~~-g~-~p~~-~~~~~ll~~~~~~~~----~~~~~~~~a~~~~~ 175 (499)
+..|...+....+.++. +.+.++|+..... |. .|+. ..|...+........ ...+..+.+..+|.
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 88888888766665543 3345788876553 76 5653 566655543311000 01234567788888
Q ss_pred HHHHcCCCCchhHHHHHHHHHHh-------------CCChhHHHHHHHhc-------cC--------------C--C---
Q 010837 176 QILKCDVKADDVLYTALVDSYVK-------------GGKTSYARIVFDMM-------LE--------------K--N--- 216 (499)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~-------~~--------------~--~--- 216 (499)
..+......-..+|......-.. ..+++.|...+.++ .. | +
T Consensus 219 raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 219 TLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred HHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 87753222122333222211111 11233444444432 10 0 0
Q ss_pred ---hHhHHHHHHHHHhCC-------CHHHHHHHHHhcCC--C-ChhhHHHHHHHHhcChhhHHHHH-HHHHHHHHcccCC
Q 010837 217 ---VICSTSMISGFMSQG-------FVEDAEEIFRKTVE--K-DIVVYNAMIEGYSISIETARKAL-EVHCQLIKNVFFE 282 (499)
Q Consensus 217 ---~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~~a~-~~~~~~~~~~~~~ 282 (499)
...|...+.---..+ ..+.+..+|++... | ....|.....-+... ++.++|. .+++..... .+.
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~-~~~~~a~r~il~rAi~~-~P~ 376 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEK-NTDSTVITKYLKLGQQC-IPN 376 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-SCCTTHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHh-CCC
Confidence 134555554333322 12334566766652 2 334444444433333 5556786 999988864 334
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC-------------CC------------hhHHHHHHHHHHhCCChhHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ-------------KN------------VFTWTSMIDGYGKNGNPNQALEL 337 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~g~~~~a~~~ 337 (499)
+...+-..+....+.|+++.|..+|+++.+ |+ ...|...+....+.|+.+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555677788888999999999999998764 21 23678888888889999999999
Q ss_pred HHHHHHc-C-CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 010837 338 FCMMQEC-C-VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415 (499)
Q Consensus 338 ~~~m~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (499)
|.+..+. + ..+......+.+.- ...++.+.|.++|+...+.++ -+...+...++.....|+.+.|..+|++....
T Consensus 457 f~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLENAYIEY-HISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999875 2 22223333333332 223569999999999996543 35566778888888899999999999998873
Q ss_pred -C----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 416 -P----NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 416 -~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
| ....|...+.--.+.|+.+.+..+.+++.+..|+.
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3 34678888888889999999999999999998875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=117.52 Aligned_cols=239 Identities=14% Similarity=0.085 Sum_probs=143.4
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh
Q 010837 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296 (499)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (499)
..++..+...+...|++++|..+|+++.+ +...............+..+...|..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-------------------------~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALE-------------------------DLEKTSGHDHPDVATMLNILALVYRD 81 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------HHHHHHCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------HHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45677777788888888888887765431 11111100111123455566677777
Q ss_pred cCChHHHHHHHHhcCC-----------CChhHHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHH
Q 010837 297 CGKIDDARRVFDHMQQ-----------KNVFTWTSMIDGYGKNGNPNQALELFCMMQEC------CVQP-NYVTFLGALS 358 (499)
Q Consensus 297 ~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~ 358 (499)
.|++++|...++++.+ .....+..+...+...|++++|...+++..+. +..| ....+..+..
T Consensus 82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 7777777777766542 12346667777777888888888888777653 2122 2345667777
Q ss_pred HHcccCcHHHHHHHHHHchHhc-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----------C------
Q 010837 359 ACGHAGLVDKGREIFESMERDY-----SMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPEK----------P------ 416 (499)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~------ 416 (499)
.+...|++++|..+++++.... +..| ...++..+..+|...|++++|.+.++++... +
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 7888888888888888776321 1123 3456777788888888888888888776541 0
Q ss_pred -CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 417 -NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 417 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
....+..+...+...+.+.++...++......+.. ..++..++.+|.+.|++++|.+.+++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV-TTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11122223333344455556666666666555554 67788888899999999999988888765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=102.95 Aligned_cols=160 Identities=16% Similarity=0.065 Sum_probs=89.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh
Q 010837 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398 (499)
Q Consensus 319 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 398 (499)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 333444444444444444444443321 223444444445555555555555555555422 11234445555555555
Q ss_pred cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 399 AGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 399 ~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
.|++++|.+.++++.. +.+...+..+...+...|++++|.+.++++.+..+.. ...+..++.++.+.|++++|.+.+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE-GKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666665555443 3345566666666777777777777777777666655 666777777777777777777777
Q ss_pred HHHHhC
Q 010837 477 EKMKLR 482 (499)
Q Consensus 477 ~~~~~~ 482 (499)
++..+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 776653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=124.66 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=133.1
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACM 392 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 392 (499)
+...|+.+...|.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|+..|++..+ +.| +...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 34567778888888888888888888887752 33467788888888888888888888888873 356 56788888
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChH
Q 010837 393 VDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 470 (499)
..+|...|++++|++.|++..+ +.+...|..+..++...|++++|++.|+++++..|.. ...+..++.+|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhcccHH
Confidence 8888888899988888888776 3457788889999999999999999999999998887 888999999999999999
Q ss_pred HHHHHHHHHHh
Q 010837 471 SVTELREKMKL 481 (499)
Q Consensus 471 ~A~~~~~~~~~ 481 (499)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.6e-12 Score=117.32 Aligned_cols=221 Identities=7% Similarity=-0.031 Sum_probs=166.1
Q ss_pred cChhhHHHHHHHHHHHHHccc----CC-CchhHHHHHHHHHhcCChHHHHHHHHhcCC-----C-----ChhHHHHHHHH
Q 010837 260 ISIETARKALEVHCQLIKNVF----FE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----K-----NVFTWTSMIDG 324 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~-----~~~~~~~l~~~ 324 (499)
...|++++|...++...+.-. .+ ...++..+...|...|++++|...+++..+ + ...+++.+...
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 344777888888888776411 11 245778889999999999999999888763 1 23478888999
Q ss_pred HHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHcccCcHHHHHHHHHHchHh---cCCCC-ChhHHHHHHHH
Q 010837 325 YGKNGNPNQALELFCMMQECCV-QPN----YVTFLGALSACGHAGLVDKGREIFESMERD---YSMKP-KMEHYACMVDL 395 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~ 395 (499)
|...|++++|.+.+++..+... .++ ..++..+..+|...|++++|...+++..+- .+..| ...++..+...
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 9999999999999998765311 112 247888899999999999999999988841 12213 46678899999
Q ss_pred HHhcCCHHHHHHHHHhCCC----CCC---HHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 396 LGRAGSLEQALKFVLEMPE----KPN---SDVWAALLSSCRLHDD---VEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~----~~~---~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
|.+.|++++|.+.+++... ..+ ...+..+...+...|+ +++|+.++++... .......+..++..|.+
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHH
Confidence 9999999999999998765 122 2235667788889999 7777777766511 11124578889999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 010837 466 AGKWDSVTELREKMKLR 482 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~~ 482 (499)
.|++++|.+.+++..+.
T Consensus 352 ~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQV 368 (383)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-11 Score=113.10 Aligned_cols=96 Identities=9% Similarity=0.025 Sum_probs=49.6
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHH
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSMKP----KMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPN----SDV 420 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~ 420 (499)
+..+...+...|++++|...+++......-.. ...++..+...|...|++++|.+.++++.. ..+ ..+
T Consensus 226 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 305 (338)
T 3ro2_A 226 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 305 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 33444444444555555444444432110000 133455555666666666666666655543 011 335
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
+..+...+...|++++|...++++.+..
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 306 CWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 5666667777777777777777776644
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-10 Score=107.37 Aligned_cols=229 Identities=9% Similarity=0.036 Sum_probs=142.1
Q ss_pred HHHHHHHhCCChhHHHHHHHhccCC---------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcC
Q 010837 191 ALVDSYVKGGKTSYARIVFDMMLEK---------NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 261 (499)
.....+...|++++|+..|++..+. ...++..+...|...|++++|...+++..
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al----------------- 168 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL----------------- 168 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-----------------
Confidence 3445567788888888888776432 13466777777788888887777766432
Q ss_pred hhhHHHHHHHHHHHHHcccC-CCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhCCCh
Q 010837 262 IETARKALEVHCQLIKNVFF-EDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----KN----VFTWTSMIDGYGKNGNP 331 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~ 331 (499)
+++.... +.. ....+++.+..+|...|++++|...|++..+ ++ ..++..+...|...|++
T Consensus 169 --------~~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 169 --------DIYQNHP--LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp --------HHHHTST--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred --------HHHHhCC--CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 1111000 000 0133556677778888888888888777653 11 23566777777888888
Q ss_pred hHHHHHHHHHHHc----CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCC--C-ChhHHHHHHHHHHhcCC---
Q 010837 332 NQALELFCMMQEC----CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK--P-KMEHYACMVDLLGRAGS--- 401 (499)
Q Consensus 332 ~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~~~--- 401 (499)
++|.+.+++..+. +.+....++..+..++.+.|++++|...+++..+-..-. + ....+..+...|...++
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 8888888777651 122235567777777788888888888887776432211 1 22344555555666666
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 402 LEQALKFVLEMPEKPN-SDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 402 ~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
+++|+..+++....++ ...+..+...|...|++++|...++++.+
T Consensus 319 ~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 IHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777776544222 23455666667777777777777766654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.2e-12 Score=115.54 Aligned_cols=240 Identities=12% Similarity=0.038 Sum_probs=157.6
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhccC--------C---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHH
Q 010837 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLE--------K---NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253 (499)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 253 (499)
+..++..+...+...|++++|..+|+++.+ . ...++..+...|...|++++|.+.+++..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------- 96 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL--------- 96 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------
Confidence 455788899999999999999999998865 2 24578888899999999999998887542
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC-----------ChhHHHHHH
Q 010837 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----------NVFTWTSMI 322 (499)
Q Consensus 254 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~ 322 (499)
.+...............+..+...|...|++++|...|+++.+. ....+..+.
T Consensus 97 ----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 97 ----------------AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp ----------------HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----------------HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 22221111111123445666777788888888888888776531 234677788
Q ss_pred HHHHhCCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhc------CCCCC-hh-
Q 010837 323 DGYGKNGNPNQALELFCMMQEC------CVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDY------SMKPK-ME- 387 (499)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~- 387 (499)
..+...|++++|.++++++.+. +..| ...++..+..+|...|++++|...++++.+.. ...+. ..
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 8888899999999998888664 2123 23467778888889999999999998887421 11121 11
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 010837 388 -----HYACMVDLLGRAGSLEQALKFVLEMPE-K-PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 388 -----~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (499)
.+..+...+...+.+.++...++.... . ....++..+..+|...|++++|.+.++++++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 122222333344555555556666554 2 3456788899999999999999999999887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=6e-10 Score=101.19 Aligned_cols=184 Identities=12% Similarity=0.104 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-Chh-HHHHHHHHHHhCCChhHHHHHHHH
Q 010837 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVF-TWTSMIDGYGKNGNPNQALELFCM 340 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 340 (499)
.++|..++++.++.-.+.+...|..++..+.+.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 367777777777632223455788888889999999999999998875 3 343 788899999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHH-cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----C
Q 010837 341 MQECCVQPNYVTFLGALSAC-GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE----K 415 (499)
Q Consensus 341 m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~ 415 (499)
..+.+ +++...|....... ...|+.++|..+|+...+.. +-+...|..++..+.+.|++++|..+|+++.. .
T Consensus 160 a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 98753 33444554433332 23699999999999998542 22677889999999999999999999998876 3
Q ss_pred C--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 416 P--NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 416 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
| ....|..++....+.|+.+.|..+++++.+..|+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 3 46688888999999999999999999999988875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.6e-11 Score=115.33 Aligned_cols=180 Identities=7% Similarity=-0.037 Sum_probs=157.7
Q ss_pred ChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHH
Q 010837 299 KIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNP-NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 299 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
.++++...+++... .+...+..+...+...|++ ++|++.|++..+.. +.+...+..+..+|...|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35666666665543 3678899999999999999 99999999998863 4457899999999999999999999999
Q ss_pred HchHhcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc--------CCHH
Q 010837 375 SMERDYSMKPKMEHYACMVDLLGRA---------GSLEQALKFVLEMPE--KPNSDVWAALLSSCRLH--------DDVE 435 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~--------~~~~ 435 (499)
+.. .+.|+...+..+...|... |++++|++.|+++.+ +.+...|..+..+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 4568888899999999999 999999999999876 45688999999999988 9999
Q ss_pred HHHHHHHHHHhcCC---CCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 436 MANIAANEIFKLNA---NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 436 ~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+|++.|+++++..| .. +..|..++.+|...|++++|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSN-PDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999988 55 8999999999999999999999999988743
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-10 Score=106.93 Aligned_cols=297 Identities=10% Similarity=0.048 Sum_probs=198.6
Q ss_pred CCchhHHHHHHHHH--HhCCChhHHHHHHHhccC------C--ChHhHHHHHHH--HHhCCCHHHHH---------HHHH
Q 010837 183 KADDVLYTALVDSY--VKGGKTSYARIVFDMMLE------K--NVICSTSMISG--FMSQGFVEDAE---------EIFR 241 (499)
Q Consensus 183 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~--~~~~g~~~~a~---------~~~~ 241 (499)
.|+..+-+.|-+-| .+.+++++|.++++++.+ . +...|..++.. ....+.++.+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34455555555555 788999999888887633 1 23334444332 11112222222 4444
Q ss_pred hcC---CCCh--h--hHHHHHHHHhcChhhHHHHHHHHHHHHHcccC-C----CchhHHHHHHHHHhcCChHHHHHHHHh
Q 010837 242 KTV---EKDI--V--VYNAMIEGYSISIETARKALEVHCQLIKNVFF-E----DVKLGSALVDMYAKCGKIDDARRVFDH 309 (499)
Q Consensus 242 ~~~---~~~~--~--~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 309 (499)
.+. .+.. . -|......+....|+.++|...++...+.... + ...++..+..+|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 332 2211 1 12223333334458888999999988765321 2 245778889999999999999998887
Q ss_pred cCC-----CC-----hhHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHcccCcHHHHHHHHH
Q 010837 310 MQQ-----KN-----VFTWTSMIDGYGKNGNPNQALELFCMMQEC----CVQP-NYVTFLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 310 ~~~-----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
..+ ++ ..+++.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 653 12 346788899999999999999999987653 1111 23467788899999999999999999
Q ss_pred HchHhcC--CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC------CCC-HHHHHHHHHHHhhcCC---HHHHHHHH
Q 010837 375 SMERDYS--MKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE------KPN-SDVWAALLSSCRLHDD---VEMANIAA 441 (499)
Q Consensus 375 ~~~~~~~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~---~~~a~~~~ 441 (499)
+...-.. ..| ...++..+...|.+.|++++|...+++... .+. ...+..+...+...++ +++|+..+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 9884110 123 466788899999999999999999987654 122 3456666667778888 77777777
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
++.. ........+..++..|.+.|++++|.+.+++..+
T Consensus 327 ~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6621 1111145677899999999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-10 Score=96.21 Aligned_cols=164 Identities=13% Similarity=-0.023 Sum_probs=142.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 361 (499)
..+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4566678889999999999999999875 367788899999999999999999999998863 456788888999999
Q ss_pred ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANI 439 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 439 (499)
..|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++.. +.+..++..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999843 233677888999999999999999999998876 4567899999999999999999999
Q ss_pred HHHHHHhcCCCC
Q 010837 440 AANEIFKLNAND 451 (499)
Q Consensus 440 ~~~~~~~~~~~~ 451 (499)
.++++.+..+..
T Consensus 166 ~~~~~~~~~~~~ 177 (186)
T 3as5_A 166 HFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHcCCCc
Confidence 999999887665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-11 Score=101.89 Aligned_cols=189 Identities=10% Similarity=-0.018 Sum_probs=137.2
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 358 (499)
++..+......+...|++++|...|++..+ ++...+..+..++...|++++|++.+++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 456777788888888999999988887763 566677778888888899999999988888752 234567778888
Q ss_pred HHcccCcHHHHHHHHHHchHhcCCCC-Ch-------hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC---HHHHHHHHH
Q 010837 359 ACGHAGLVDKGREIFESMERDYSMKP-KM-------EHYACMVDLLGRAGSLEQALKFVLEMPE-KPN---SDVWAALLS 426 (499)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~---~~~~~~l~~ 426 (499)
++...|++++|...+++..+. .| +. ..|..+...+...|++++|++.|+++.+ .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 888889999999988888843 34 33 4577777888888889999988888877 454 456777777
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
++... +...++++...+... ...|... .....+.+++|...+++..+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~-~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSN-KEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTC-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHhcccCC-HHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 77544 334456666655444 3333333 3445667899999999988754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-09 Score=97.98 Aligned_cols=260 Identities=11% Similarity=0.039 Sum_probs=120.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccC----CCh----HhHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChhhHHHHH
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLE----KNV----ICSTSMISGFMSQGFVEDAEEIFRKTVE-----KDIVVYNAMI 255 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ll 255 (499)
...+...+...|++++|...+++... .+. .+++.+...+...|++++|.+.+++... .+...
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 91 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY----- 91 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH-----
Confidence 34445566678888888888776532 122 2455566677777888888777766541 11110
Q ss_pred HHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC----------C-ChhHHHHHHHH
Q 010837 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----------K-NVFTWTSMIDG 324 (499)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~l~~~ 324 (499)
...++..+...+...|++++|...+++..+ + ....+..+...
T Consensus 92 ---------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 92 ---------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence 011123334444455555555555444331 0 01223334444
Q ss_pred HHhCCChhHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHH-----HHHHH
Q 010837 325 YGKNGNPNQALELFCMMQECCVQ--P--NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA-----CMVDL 395 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~ 395 (499)
+...|++++|...+++....... + ...++..+...+...|++++|...+++......-......+. ..+..
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 55555555555555554432111 0 123344444455555555555555555442111000000111 12222
Q ss_pred HHhcCCHHHHHHHHHhCCCC-CC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC----C-CchhHHHHHHHH
Q 010837 396 LGRAGSLEQALKFVLEMPEK-PN-----SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND----R-PGAYVALSNTLA 464 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~-~~~~~~l~~~~~ 464 (499)
+...|++++|...+++.... +. ...+..+...+...|++++|...++++....... . ...+..+..++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 44555555555555555431 10 1233444455555555555555555554322111 0 123444455555
Q ss_pred hcCChHHHHHHHHHHH
Q 010837 465 AAGKWDSVTELREKMK 480 (499)
Q Consensus 465 ~~g~~~~A~~~~~~~~ 480 (499)
..|+.++|...+++..
T Consensus 305 ~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 5555555555555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.6e-10 Score=97.67 Aligned_cols=203 Identities=13% Similarity=0.051 Sum_probs=152.9
Q ss_pred ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHH
Q 010837 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMID 323 (499)
Q Consensus 247 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~ 323 (499)
|...+...-..+... |++++|...|+...+....++...+..+..++.+.|++++|...|++..+ | +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNA-KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 444555555555555 89999999999999987656777777799999999999999999999875 3 5568889999
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC---hhHHHHHH
Q 010837 324 GYGKNGNPNQALELFCMMQECCVQPNY-------VTFLGALSACGHAGLVDKGREIFESMERDYSMKPK---MEHYACMV 393 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 393 (499)
.+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|+++. .+.|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 9999999999999999998853 3344 457778888899999999999999998 44665 56777888
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 394 DLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
.+|...|+. .++++.. ..+...|.... ....+.+++|...++++.+..|.. ..+...+..+
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNR-TEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHH
Confidence 888766543 2333222 23444444433 334567899999999999999887 5555544443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-11 Score=107.59 Aligned_cols=215 Identities=13% Similarity=0.080 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----------CChhHHHHHHHHHHhCCChhHHH
Q 010837 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----------KNVFTWTSMIDGYGKNGNPNQAL 335 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~ 335 (499)
+|++++..+.....+....++..+...|...|++++|...|+++.+ ....++..+...|...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 3444444443322223455777788888888888888888877652 13456777888888889999988
Q ss_pred HHHHHHHHc------CC-CCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhc-----CCCC-ChhHHHHHHHHHHhcCCH
Q 010837 336 ELFCMMQEC------CV-QPNYVTFLGALSACGHAGLVDKGREIFESMERDY-----SMKP-KMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 336 ~~~~~m~~~------~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~~~~ 402 (499)
+.+++..+. .. +....++..+...+...|++++|...++++.... +-.| ...++..+..+|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 888887654 11 2234567778888888899999988888887320 1133 456778888888889999
Q ss_pred HHHHHHHHhCCC----------C-CCHHHHHHHHHHHhhcCC------HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 403 EQALKFVLEMPE----------K-PNSDVWAALLSSCRLHDD------VEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 403 ~~a~~~~~~~~~----------~-~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
++|.+.++++.. . .....|..+...+...+. +..+...++......+.. ..++..++.+|.+
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~ 264 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV-NTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHH
Confidence 999888877654 1 112233333333332222 223322222222122222 4578889999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 010837 466 AGKWDSVTELREKMKLR 482 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~~ 482 (499)
.|++++|.+.+++..+.
T Consensus 265 ~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 265 QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999887653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-10 Score=115.60 Aligned_cols=161 Identities=9% Similarity=0.105 Sum_probs=141.8
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
+...++.|..+|.+.|++++|+..|++..+ .+...|..+..+|.+.|++++|++.|++..+.. +-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 356788899999999999999999999875 367889999999999999999999999998853 3457789999999
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHH
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
+...|++++|.+.|++..+ +.| +...|..+..+|.+.|++++|++.|++..+ +.+...+..+..++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999983 356 678899999999999999999999999877 3467899999999999999999
Q ss_pred HHHHHHHHHhc
Q 010837 437 ANIAANEIFKL 447 (499)
Q Consensus 437 a~~~~~~~~~~ 447 (499)
|.+.++++++.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999888764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.8e-09 Score=97.48 Aligned_cols=269 Identities=12% Similarity=0.037 Sum_probs=173.8
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHH
Q 010837 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194 (499)
Q Consensus 115 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 194 (499)
......+...|++++|...+++..... |+..... ....++.+..
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~----------------------------------~~~~~~~l~~ 61 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYS----------------------------------RIVATSVLGE 61 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHH----------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhH----------------------------------HHHHHHHHHH
Confidence 334455677888888888888877642 2111000 0123455667
Q ss_pred HHHhCCChhHHHHHHHhccCC-----C----hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhH
Q 010837 195 SYVKGGKTSYARIVFDMMLEK-----N----VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA 265 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 265 (499)
.+...|++++|.+.+++..+. + ..++..+...+...|++++|.+.+++..
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al--------------------- 120 (373)
T 1hz4_A 62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF--------------------- 120 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------------
Confidence 788889999999998887441 2 2345667778888999999988887542
Q ss_pred HHHHHHHHHHHHcccC--C-CchhHHHHHHHHHhcCChHHHHHHHHhcCC--C------ChhHHHHHHHHHHhCCChhHH
Q 010837 266 RKALEVHCQLIKNVFF--E-DVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K------NVFTWTSMIDGYGKNGNPNQA 334 (499)
Q Consensus 266 ~~a~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------~~~~~~~l~~~~~~~g~~~~a 334 (499)
.+.. +.+.. | ....+..+...+...|++++|...+++..+ + ....+..+...+...|++++|
T Consensus 121 ----~~~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 193 (373)
T 1hz4_A 121 ----QLIN---EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 193 (373)
T ss_dssp ----HHHH---HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred ----HHHH---HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1111 11111 1 123445566777888888888888877542 1 124566777888888999999
Q ss_pred HHHHHHHHHcCCCCC--HHHHH----HHHHHHcccCcHHHHHHHHHHchHhcCCCC---ChhHHHHHHHHHHhcCCHHHH
Q 010837 335 LELFCMMQECCVQPN--YVTFL----GALSACGHAGLVDKGREIFESMERDYSMKP---KMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 335 ~~~~~~m~~~~~~p~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a 405 (499)
...+++.......++ ..... ..+..+...|++++|...++..... ...+ ....+..+...+...|++++|
T Consensus 194 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A 272 (373)
T 1hz4_A 194 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPA 272 (373)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 999888765321111 11111 2334467889999999999888732 2111 122456777888899999999
Q ss_pred HHHHHhCCC----CC---CH-HHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 406 LKFVLEMPE----KP---NS-DVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 406 ~~~~~~~~~----~~---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
...+++... .+ +. ..+..+..++...|+.++|...+++.....
T Consensus 273 ~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 273 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 998887654 11 12 356667778888999999999998887643
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=7.1e-10 Score=99.78 Aligned_cols=203 Identities=12% Similarity=0.009 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---------ChhHHHHHHHHHHhCCChhH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---------NVFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~ 333 (499)
+++++|...+... ...|...|++++|...|++..+- ...+|+.+..+|...|++++
T Consensus 31 ~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 31 YKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3466666666555 33466778888888777766431 13567778888888888888
Q ss_pred HHHHHHHHHHcCC---CC--CHHHHHHHHHHHccc-CcHHHHHHHHHHchHhcCCCCC----hhHHHHHHHHHHhcCCHH
Q 010837 334 ALELFCMMQECCV---QP--NYVTFLGALSACGHA-GLVDKGREIFESMERDYSMKPK----MEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 334 a~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~ 403 (499)
|+..+++..+... .+ -..++..+..+|... |++++|...|++..+-..-..+ ..++..+...|.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 8888877654311 11 134677777788885 8888888888887732110001 346777888888888888
Q ss_pred HHHHHHHhCCC-CC---CH-----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc----hhHHHHHHHH--hcCC
Q 010837 404 QALKFVLEMPE-KP---NS-----DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG----AYVALSNTLA--AAGK 468 (499)
Q Consensus 404 ~a~~~~~~~~~-~~---~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~--~~g~ 468 (499)
+|+..|+++.. .| .. ..|..+..++...|++++|...+++.++..|..... .+..++.+|. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 88888887654 11 11 256677777888888888888888888776654111 2344555554 3456
Q ss_pred hHHHHHHHHHHH
Q 010837 469 WDSVTELREKMK 480 (499)
Q Consensus 469 ~~~A~~~~~~~~ 480 (499)
+++|.+.++++.
T Consensus 256 ~~~A~~~~~~~~ 267 (292)
T 1qqe_A 256 LSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHhccCC
Confidence 777777776543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-08 Score=89.89 Aligned_cols=238 Identities=11% Similarity=0.013 Sum_probs=160.6
Q ss_pred HHHhCCChhHHHHHHHhccCCC-hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHH
Q 010837 195 SYVKGGKTSYARIVFDMMLEKN-VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 273 (499)
-..-.|++..++.-...+...+ ...-.-+.++|...|+++... ...|....+..+ ..+... .+...++
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~l-a~~~~~-----~a~~~l~ 90 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD-----PTSKLGKVLDLY-VQFLDT-----KNIEELE 90 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC-----SSSTTHHHHHHH-HHHHTT-----TCCHHHH
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC-----CCCHHHHHHHHH-HHHhcc-----cHHHHHH
Confidence 3455788888887666654333 233334557888888876421 112332233333 333332 2667777
Q ss_pred HHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC-----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010837 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348 (499)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 348 (499)
+..+.+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 776655 344555567888899999999999999987442 4567778889999999999999999999874 56
Q ss_pred -----CHHHHHHHHHHH--cc--cCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----
Q 010837 349 -----NYVTFLGALSAC--GH--AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE----- 414 (499)
Q Consensus 349 -----~~~~~~~ll~~~--~~--~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----- 414 (499)
+..+...+..++ .. .++..+|..+|+++..+ .|+...-..++.++.+.|++++|.+.++.+.+
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 355666666552 22 34899999999998733 35433334445588899999999999886544
Q ss_pred -------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 415 -------KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 415 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+.+..++..+|......|+ +|.++++++.+..|..
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 2355666566666666676 7889999999988876
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-09 Score=96.24 Aligned_cols=225 Identities=15% Similarity=0.119 Sum_probs=134.7
Q ss_pred CCcCcchhHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCC-----------ChHhHHHH
Q 010837 162 NVPLPRNLGRMVHAQILKC-------DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-----------NVICSTSM 223 (499)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l 223 (499)
...++.+.|...+++.++. ..+....++..+...|...|++++|+..+++..+. ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4445555555555544431 21234557888889999999999999998887421 24577888
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHH
Q 010837 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303 (499)
Q Consensus 224 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 303 (499)
...|...|++++|.+.|++.. .++........+.....+..+...|...|++++|
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al-------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 146 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRAL-------------------------EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEV 146 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHH-------------------------HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH-------------------------HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence 888888899888888887542 1111111111112244566677778888888888
Q ss_pred HHHHHhcCCC-----------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc-------CCCCCH-HHHHHHHHHHcc--
Q 010837 304 RRVFDHMQQK-----------NVFTWTSMIDGYGKNGNPNQALELFCMMQEC-------CVQPNY-VTFLGALSACGH-- 362 (499)
Q Consensus 304 ~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~-~~~~~ll~~~~~-- 362 (499)
...|+++.+. ...++..+...+...|++++|...+++..+. ...+.. ..+..+...+..
T Consensus 147 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (283)
T 3edt_B 147 EYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKD 226 (283)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCC
Confidence 8887776531 2346777788888888888888888887653 112211 122222222222
Q ss_pred ----cCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 363 ----AGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 363 ----~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
...+..+...++... ...| ...++..+...|...|++++|.++|++..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 227 KRRDSAPYGEYGSWYKACK---VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCC------------CCC---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222344444444333 2223 456788889999999999999999887543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-09 Score=83.77 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=63.0
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD 433 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 433 (499)
+...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|.+.++++.. +.+...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 334444444444444444444421 1 11333444444444455555555555544433 2334455555555566666
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 434 VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+++|.+.++++.+..+.. ...+..++.++.+.|++++|.+.++++.+
T Consensus 85 ~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666555544 45555666666666666666666666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.6e-09 Score=93.44 Aligned_cols=182 Identities=13% Similarity=0.021 Sum_probs=116.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCC--C-C---hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC-HHHHHH
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-N---VFTWTSMIDGYGKNGNPNQALELFCMMQECCV-QPN-YVTFLG 355 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~~ 355 (499)
...+..+...+.+.|++++|...|+++.+ | + ...+..+..++.+.|++++|...|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34455566667777777777777777654 2 2 44566666777777777777777777766421 111 334555
Q ss_pred HHHHHcc--------cCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010837 356 ALSACGH--------AGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426 (499)
Q Consensus 356 ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 426 (499)
+..++.. .|++++|...|+++.+. .|+ ......+.......+.. ...+..+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 5566666 67777777777777643 232 22222221111110000 112456778
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCC--CchhHHHHHHHHhc----------CChHHHHHHHHHHHhCC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNANDR--PGAYVALSNTLAAA----------GKWDSVTELREKMKLRG 483 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 483 (499)
.|...|++++|+..++++++..|... ...+..++.+|... |++++|...++++.+..
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 89999999999999999999887752 35788889999876 89999999999988743
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=5e-09 Score=81.65 Aligned_cols=131 Identities=15% Similarity=0.217 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 396 (499)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++... . +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 45667777777888888888888877653 345666777777777888888888888887733 1 23556677788888
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 397 GRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
...|++++|.+.++++.. +.+..++..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888877765 345677788888888888888888888888876654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.1e-09 Score=91.57 Aligned_cols=202 Identities=10% Similarity=0.008 Sum_probs=136.9
Q ss_pred ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCC--chhHHHHHHHHHhcCChHHHHHHHHhcCC--C----ChhHH
Q 010837 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED--VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K----NVFTW 318 (499)
Q Consensus 247 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~~~~~ 318 (499)
+...+...-..+... |++++|...|+.+++..+... ...+..+..+|.+.|++++|...|+++.+ | ....+
T Consensus 14 ~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQ-GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHT-TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 344444444455555 889999999999988754321 45777889999999999999999999875 3 23467
Q ss_pred HHHHHHHHh--------CCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHH
Q 010837 319 TSMIDGYGK--------NGNPNQALELFCMMQECCVQPNY-VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389 (499)
Q Consensus 319 ~~l~~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 389 (499)
..+..++.. .|++++|...|+++.+.. |+. .....+ ..+..+... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHHH
Confidence 778888888 999999999999998853 332 222111 111111100 01225
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhc----------CCHHHHHHHHHHHHhcCCCCC--
Q 010837 390 ACMVDLLGRAGSLEQALKFVLEMPE-KPN----SDVWAALLSSCRLH----------DDVEMANIAANEIFKLNANDR-- 452 (499)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~-- 452 (499)
..+...|.+.|++++|+..|+++.. .|+ ...+..+..+|... |++++|...++++++..|...
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 5677788888999999998888765 233 45677777777755 888999999999999887761
Q ss_pred CchhHHHHHHHHhcCChH
Q 010837 453 PGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~ 470 (499)
..+...+..++.+.|+++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 123334444444444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-08 Score=86.64 Aligned_cols=183 Identities=10% Similarity=-0.029 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC--CC----hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCH-HHHHHH
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQ--KN----VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ-PNY-VTFLGA 356 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~-~~~~~l 356 (499)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|+++.+.... +.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3445566677888888888888888764 32 245677778888888888888888888775321 111 233344
Q ss_pred HHHHcc------------------cCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 010837 357 LSACGH------------------AGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417 (499)
Q Consensus 357 l~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 417 (499)
..++.. .|+.++|...|+++.+ ..|+ ...+....... ......
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~----~~~~~~----------- 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLV----FLKDRL----------- 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHH----HHHHHH-----------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHH----HHHHHH-----------
Confidence 444432 4566666666666662 2332 22222111100 000000
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC--CchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR--PGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
......+...+.+.|++++|+..++++++..|... ...+..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123456778899999999999999999888762 257889999999999999999999988876543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-08 Score=90.12 Aligned_cols=192 Identities=11% Similarity=0.064 Sum_probs=124.0
Q ss_pred HHHHHhCCChhHHHHHHHhccCC-----C----hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChh
Q 010837 193 VDSYVKGGKTSYARIVFDMMLEK-----N----VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIE 263 (499)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 263 (499)
...|...|++++|.+.|++..+- + ..+|+.+...|...|++++|+..|++..+ .+... +
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~-----------l~~~~-g 111 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ-----------IFTHR-G 111 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHHT-T
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------HHHHc-C
Confidence 45677889999998888776431 1 45778888888888888888888775431 00000 1
Q ss_pred hHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhc-CChHHHHHHHHhcCCC-----C----hhHHHHHHHHHHhCCChhH
Q 010837 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC-GKIDDARRVFDHMQQK-----N----VFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~ 333 (499)
+... ...+++.+..+|... |++++|...|++..+- + ..++..+...+.+.|++++
T Consensus 112 ~~~~---------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 112 QFRR---------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp CHHH---------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHH---------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 1111 123456677778885 8888888888877641 1 3457777888888888888
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChh------HHHHHHHHHH--hc
Q 010837 334 ALELFCMMQECCVQPNY------VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME------HYACMVDLLG--RA 399 (499)
Q Consensus 334 a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~ 399 (499)
|+..|++..+....... ..|..+..++...|++++|...|++.. .+.|+.. .+..++..+. ..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 88888888774322211 145666677778888888888888877 3444321 2334455553 45
Q ss_pred CCHHHHHHHHHhCCC
Q 010837 400 GSLEQALKFVLEMPE 414 (499)
Q Consensus 400 ~~~~~a~~~~~~~~~ 414 (499)
+++++|++.|+++..
T Consensus 254 ~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccCCc
Confidence 668888888877764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-08 Score=91.52 Aligned_cols=177 Identities=10% Similarity=-0.018 Sum_probs=139.3
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhc
Q 010837 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380 (499)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 380 (499)
+.....+......+...+..+...+...|++++|...|++..+.. +-+...+..+..++...|++++|...++.+..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 344455555554556677778888899999999999999998863 44667888889999999999999999999873
Q ss_pred CCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-CCchh
Q 010837 381 SMKPKMEHYAC-MVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-RPGAY 456 (499)
Q Consensus 381 ~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 456 (499)
..|+...... ....+...++.++|++.+++... +.+...+..+...+...|++++|+..++++++..|.. +...+
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 3455433322 23336677788888888888765 4567889999999999999999999999999988765 25689
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 457 VALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
..++.+|...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999988877543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.1e-09 Score=87.62 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=88.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHH-HHhc
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL-LGRA 399 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~ 399 (499)
+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++.+... .|+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 3344444555555555555444321 223344444555555555555555555555422 1222211111111 1111
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHhcCChHHHHHHH
Q 010837 400 GSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-RPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 400 ~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
+...+|+..+++... +.+...+..+...+...|++++|...++++++..|.+ +...+..++.++...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 122234555555544 2356777788888888888888888888888887764 2457888888888888888888888
Q ss_pred HHHHh
Q 010837 477 EKMKL 481 (499)
Q Consensus 477 ~~~~~ 481 (499)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-09 Score=108.24 Aligned_cols=168 Identities=12% Similarity=-0.026 Sum_probs=97.2
Q ss_pred HhcCChHHHHHHHHhcC--------C---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 010837 295 AKCGKIDDARRVFDHMQ--------Q---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363 (499)
Q Consensus 295 ~~~g~~~~a~~~~~~~~--------~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 363 (499)
...|++++|.+.+++.. + .+...+..+..++...|++++|.+.|++..+.+ +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45566666666666554 2 244555666666666666666666666665542 33445556666666666
Q ss_pred CcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHH
Q 010837 364 GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIA 440 (499)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 440 (499)
|++++|...|+++.+ +.| +...|..+..+|.+.|++++ ++.|+++.+ +.+...|..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666662 234 44555666666666666666 666666554 23455666666666666666666666
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 441 ANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
|+++++.+|.. ...+..++.++...|+
T Consensus 557 ~~~al~l~P~~-~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHF-TTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTH-HHHHHHHHHHTC----
T ss_pred HHhhcccCccc-HHHHHHHHHHHHccCC
Confidence 66666666554 5556666666554443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.5e-08 Score=81.86 Aligned_cols=172 Identities=9% Similarity=-0.046 Sum_probs=119.3
Q ss_pred HHHHHHhcCC-CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC----cHHHHHHHHHHch
Q 010837 303 ARRVFDHMQQ-KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG----LVDKGREIFESME 377 (499)
Q Consensus 303 a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 377 (499)
|.+.|++..+ .++..+..+...|...+++++|.+.|++..+.| +...+..+...|.. + +.++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444433 356666677777777777777777777777654 45566666666666 5 7888888888776
Q ss_pred HhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHhh----cCCHHHHHHHHHHHH
Q 010837 378 RDYSMKPKMEHYACMVDLLGR----AGSLEQALKFVLEMPEKPN----SDVWAALLSSCRL----HDDVEMANIAANEIF 445 (499)
Q Consensus 378 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 445 (499)
+.+ +...+..|...|.. .+++++|+++|++..+..+ ...+..|...|.. .+++++|...+++..
T Consensus 81 -~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 -EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp -HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred -HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 322 44566667777766 7788888888888777433 6777777777777 778888888888887
Q ss_pred hcCCCCCCchhHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 010837 446 KLNANDRPGAYVALSNTLAAA-G-----KWDSVTELREKMKLRGV 484 (499)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 484 (499)
+.+.. +..+..|..+|... | ++++|...+++..+.|.
T Consensus 157 ~~~~~--~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLSRT--GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTSCT--THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCC--HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77222 45777788877654 3 78888888888777664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.97 E-value=5.7e-08 Score=85.77 Aligned_cols=239 Identities=9% Similarity=0.010 Sum_probs=160.9
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChhh-HHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHH
Q 010837 224 ISGFMSQGFVEDAEEIFRKTVEKDIVV-YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302 (499)
Q Consensus 224 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (499)
++-..-.|++..++.-..++...+... -..+.+++... |..+. .....|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAl-g~~~~---------~~~~~~~~~a~~~la~-~~~~~---- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLAL-GQYQS---------QDPTSKLGKVLDLYVQ-FLDTK---- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHT-TCCCC---------CCSSSTTHHHHHHHHH-HHTTT----
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHc-CCCcc---------CCCCCHHHHHHHHHHH-Hhccc----
Confidence 344567788888888666554322222 11222333222 22110 0011222223333333 33322
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHcccCcHHHHHHHHHHchH
Q 010837 303 ARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV-QPNYVTFLGALSACGHAGLVDKGREIFESMER 378 (499)
Q Consensus 303 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (499)
|...|++..+ ++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777776653 4556667888999999999999999999877653 23566788889999999999999999999983
Q ss_pred hcCCCC-----ChhHHHHHHHHH--HhcC--CHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 379 DYSMKP-----KMEHYACMVDLL--GRAG--SLEQALKFVLEMPEK-PNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 379 ~~~~~p-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
..| +..+...|+.++ ...| ++.+|..+|+++.++ |+..+-..++.++.+.|++++|.+.++.+.+..
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 356 355566666663 3334 899999999999874 554444555558999999999999999877752
Q ss_pred ----------CCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 449 ----------ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 449 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+.. +.++..++......|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~-~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYK-PTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSH-HHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCC-HHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 444 7788777777777887 8899999988744
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-10 Score=90.22 Aligned_cols=137 Identities=9% Similarity=-0.001 Sum_probs=72.0
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHH
Q 010837 326 GKNGNPNQALELFCMMQECCVQPN-YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 403 (499)
...|++++|+..++..... .|+ ...+..+...|.+.|++++|.+.|++..+ +.| +...|..+..+|.+.|+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchH
Confidence 3344555555555554331 221 22333445555555555555555555552 233 4455555556666666666
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHH-HHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 404 QALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIA-ANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 404 ~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
+|+..|++..+ +.+..+|..+...|.+.|++++|.+. ++++++..|.. +.+|......+.+.|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~-~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS-PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhCc
Confidence 66666655554 22445566666666666665544433 46666666655 5556655555555553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=7.3e-09 Score=102.69 Aligned_cols=159 Identities=9% Similarity=-0.011 Sum_probs=121.6
Q ss_pred cCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHH
Q 010837 297 CGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373 (499)
Q Consensus 297 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 373 (499)
.|++++|...|+++.+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 356788899999999999999999999998853 445778888999999999999999999
Q ss_pred HHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc---CCHHHHHHHHHHHHhc
Q 010837 374 ESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLH---DDVEMANIAANEIFKL 447 (499)
Q Consensus 374 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 447 (499)
++..+. .| +...+..+..+|.+.|++++|.+.|++..+ +.+...+..+...+... |++++|.+.++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999843 45 577889999999999999999999998876 34678888899999999 9999999999999999
Q ss_pred CCCCCCchhHHHH
Q 010837 448 NANDRPGAYVALS 460 (499)
Q Consensus 448 ~~~~~~~~~~~l~ 460 (499)
++.. ...+..+.
T Consensus 158 ~p~~-~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGA-VEPFAFLS 169 (568)
T ss_dssp TCCC-SCHHHHTT
T ss_pred CCcc-cChHHHhC
Confidence 9887 66666555
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-08 Score=86.33 Aligned_cols=156 Identities=10% Similarity=0.028 Sum_probs=111.9
Q ss_pred HHHHHhcCChHHHHHHHHhcCCC---ChhHHHH----------------HHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 010837 291 VDMYAKCGKIDDARRVFDHMQQK---NVFTWTS----------------MIDGYGKNGNPNQALELFCMMQECCVQPNYV 351 (499)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 351 (499)
...+...|++++|...|++..+. +...|.. +..++.+.|++++|...|++..+.. +-+..
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 89 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVD 89 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHH
Confidence 34466677777777777776542 2334444 8888889999999999999988853 44677
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCH--HHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS--LEQALKFVLEMPEKPNS--DVWAALLS 426 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~--~~~~~l~~ 426 (499)
.+..+..++...|++++|...|+++.+ +.| +...+..+..+|...|+ .+.+...++.... |+. ..+..+..
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~g~ 165 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-PTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-CCchhHHHHHHHH
Confidence 888888889999999999999999883 356 67778888888766554 4456667766664 333 34444566
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
++...|++++|+..|+++++..|..
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6777889999999999998887754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.6e-09 Score=87.47 Aligned_cols=160 Identities=11% Similarity=0.054 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHcccCcHHHHHHHHHHchHh
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPN-YVTFLG----------------ALSACGHAGLVDKGREIFESMERD 379 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~ 379 (499)
.+......+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|...|++..+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444566778899999999999999885 443 445666 888999999999999999999943
Q ss_pred cCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC--HHHHHHHHHHHHhcCCCCCCc
Q 010837 380 YSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD--VEMANIAANEIFKLNANDRPG 454 (499)
Q Consensus 380 ~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 454 (499)
.| +...+..+..+|...|++++|+..|+++.+ +.+..++..+...|...|+ .+.+...++.... +.+...
T Consensus 84 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 84 ---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 56 678899999999999999999999999887 4567889988888866654 3445555555532 223223
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.+...+.++...|++++|...|++..+..
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 55667788888999999999999988754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.4e-09 Score=84.32 Aligned_cols=102 Identities=15% Similarity=0.018 Sum_probs=87.4
Q ss_pred CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhH
Q 010837 381 SMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457 (499)
Q Consensus 381 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (499)
.+.| +...+..+...+.+.|++++|+..|+++.. +.+...|..+..+|...|++++|+..|+++++..|.. +..|.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~~~~~ 108 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-YTPVF 108 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-CHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-cHHHH
Confidence 5566 566778888888899999999999988876 4567888889999999999999999999999999887 88999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 458 ALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.++.+|.+.|++++|.+.|++..+..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999888754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.7e-08 Score=86.74 Aligned_cols=221 Identities=10% Similarity=-0.011 Sum_probs=154.3
Q ss_pred CCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHh
Q 010837 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 309 (499)
.|++++|.+++++..+..... +....++++.|...+... ...|...|++++|...|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~-------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS-------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc-------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 466777777776654211000 112135666666666554 4568889999999999887
Q ss_pred cCCC-----C----hhHHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHcccCcHHHHHHHHHH
Q 010837 310 MQQK-----N----VFTWTSMIDGYGKNGNPNQALELFCMMQECC---VQPN--YVTFLGALSACGHAGLVDKGREIFES 375 (499)
Q Consensus 310 ~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~ 375 (499)
..+- + ..+|+.+...|...|++++|+..|++..+.- -.+. ..++..+..+|.. |++++|...|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7531 1 3478888999999999999999999875531 1122 3567788888988 999999999998
Q ss_pred chHhc---CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010837 376 MERDY---SMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPN----SDVWAALLSSCRLHDDVEMANIAANE 443 (499)
Q Consensus 376 ~~~~~---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (499)
...-. +... ...++..+...|.+.|++++|++.|++... .++ ...+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87422 1111 145788899999999999999999998875 122 23667777788888999999999999
Q ss_pred HHhcCCCCCCc----hhHHHHHHHHhcCChHHHHHH
Q 010837 444 IFKLNANDRPG----AYVALSNTLAAAGKWDSVTEL 475 (499)
Q Consensus 444 ~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~ 475 (499)
.+ ..|..... ....++.++ ..|+.+.+.++
T Consensus 221 al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 221 SY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred Hh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99 76654211 234455555 56777766663
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-09 Score=85.12 Aligned_cols=123 Identities=12% Similarity=0.028 Sum_probs=103.8
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcC
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHD 432 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 432 (499)
|...+...|++++|+..++... ...| +...+..+...|.+.|++++|++.|++..+ +.+..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456677889999999998877 4455 455677899999999999999999999877 457889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHH-HHHHHhC
Q 010837 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL-REKMKLR 482 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 482 (499)
++++|+..|+++++.+|.. +.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999988 89999999999999999887665 5777663
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.7e-08 Score=98.67 Aligned_cols=147 Identities=11% Similarity=-0.033 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
++.++|...+++..+... .+...+..+...|.+.|++++|...|++..+ .+...+..+...|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677888999988877643 2466788888999999999999999998765 356788889999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhc---CCHHHHHHHHHhCCC
Q 010837 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRA---GSLEQALKFVLEMPE 414 (499)
Q Consensus 340 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 414 (499)
+..+.. +.+...+..+..++...|++++|.+.+++..+. .| +...+..+..++... |++++|.+.+++..+
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 988863 445778888899999999999999999998843 44 567888889999999 999999999988776
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-07 Score=80.25 Aligned_cols=174 Identities=9% Similarity=-0.108 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC-ChhHHHHHHHHHHhCC----ChhHHHHHHHHH
Q 010837 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNG----NPNQALELFCMM 341 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g----~~~~a~~~~~~m 341 (499)
+|...|+...+.| ++..+..|...|...+++++|...|++..+. ++..+..+...|.. + ++++|.+.|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4666777777664 5677778888899999999999999998764 67788888888887 6 899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHcc----cCcHHHHHHHHHHchHhcCCCCC---hhHHHHHHHHHHh----cCCHHHHHHHHH
Q 010837 342 QECCVQPNYVTFLGALSACGH----AGLVDKGREIFESMERDYSMKPK---MEHYACMVDLLGR----AGSLEQALKFVL 410 (499)
Q Consensus 342 ~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~ 410 (499)
.+.| +...+..+...|.. .+++++|..+|++.. + ..++ ...+..|...|.. .+++++|+++|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~--~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA-R--DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-S--STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-H--cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8765 56777788888877 889999999999988 3 3342 6778888898988 889999999999
Q ss_pred hCCCC-CCHHHHHHHHHHHhhc-C-----CHHHHHHHHHHHHhcCCC
Q 010837 411 EMPEK-PNSDVWAALLSSCRLH-D-----DVEMANIAANEIFKLNAN 450 (499)
Q Consensus 411 ~~~~~-~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~~ 450 (499)
+..+. .+...+..|...|... | +.++|...+++..+.|..
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 98764 6677888888887653 3 899999999999988754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-07 Score=96.30 Aligned_cols=168 Identities=12% Similarity=0.061 Sum_probs=137.1
Q ss_pred cChhhHHHHHHHHHHHH--------HcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhC
Q 010837 260 ISIETARKALEVHCQLI--------KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKN 328 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 328 (499)
...++.++|.+.+++.. +.. +.+...+..+..+|.+.|++++|...|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 34488889999999988 322 33566788889999999999999999999875 3678899999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHH
Q 010837 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALK 407 (499)
Q Consensus 329 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 407 (499)
|++++|.+.|++..+.. +-+...+..+..++.+.|++++ .+.|+++.+ +.| +...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998863 3356788889999999999999 999999983 345 67789999999999999999999
Q ss_pred HHHhCCC-CCC-HHHHHHHHHHHhhcCC
Q 010837 408 FVLEMPE-KPN-SDVWAALLSSCRLHDD 433 (499)
Q Consensus 408 ~~~~~~~-~~~-~~~~~~l~~~~~~~~~ 433 (499)
.|+++.+ .|+ ...+..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999987 455 5678788888776555
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=81.81 Aligned_cols=174 Identities=14% Similarity=0.042 Sum_probs=123.1
Q ss_pred HHHhcChhhHHHHHHHHHHHHHcccCCC--chhHHHHHHHHHhcCChHHHHHHHHhcCC--CC-h---hHHHHHHHHHHh
Q 010837 256 EGYSISIETARKALEVHCQLIKNVFFED--VKLGSALVDMYAKCGKIDDARRVFDHMQQ--KN-V---FTWTSMIDGYGK 327 (499)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~ 327 (499)
..+... |++++|...|+.+.+..+... ...+..+..+|.+.|++++|...|+++.+ |+ . ..+..+..++..
T Consensus 12 ~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 12 QQKLQD-GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 334444 889999999999998654322 34677789999999999999999999874 32 2 245555555554
Q ss_pred ------------------CCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhH
Q 010837 328 ------------------NGNPNQALELFCMMQECCVQPNY-VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388 (499)
Q Consensus 328 ------------------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 388 (499)
.|++++|...|+++.+. .|+. ........ ...+...+. ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---------~~ 149 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---------KY 149 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---------HH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---------HH
Confidence 57899999999999885 3433 22221110 001111111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE-KPNS----DVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
...+...|.+.|++++|+..|+++.+ .|+. ..+..+..++.+.|+.++|.+.++.+...+|..
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 23567788899999999999998876 3442 568888999999999999999999998888765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-08 Score=81.59 Aligned_cols=156 Identities=10% Similarity=-0.019 Sum_probs=119.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hc
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA-CG 361 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~ 361 (499)
.+..+...+.+.|++++|...|+++.+ .+...+..+...+...|++++|...+++..... |+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344566778899999999999999885 367788899999999999999999999887643 344433322211 11
Q ss_pred ccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC---HHHHHHHHHHHhhcCCHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN---SDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~ 436 (499)
..+....|...+++..+ ..| +...+..+..++...|++++|...|+++.. .|+ ...+..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22223346788888873 356 578888999999999999999999998876 343 5688899999999999999
Q ss_pred HHHHHHHHHh
Q 010837 437 ANIAANEIFK 446 (499)
Q Consensus 437 a~~~~~~~~~ 446 (499)
|...+++.+.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.3e-08 Score=81.31 Aligned_cols=120 Identities=8% Similarity=-0.023 Sum_probs=63.8
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCH
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDV 434 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 434 (499)
...+...|++++|...|++.. .|+...+..+...|...|++++|++.|++... +.+...+..+..++...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 334445555555555554442 23444555555555555555555555555443 23444555555555555556
Q ss_pred HHHHHHHHHHHhcCCCCCC----------------chhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 435 EMANIAANEIFKLNANDRP----------------GAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
++|.+.++++.+..+.. . ..+..++.+|.+.|++++|.+.+++..+.
T Consensus 88 ~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGN-QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHTTTTC-SEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCc-cHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66655555555544443 2 45555566666666666666666655543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.82 E-value=7.6e-06 Score=78.85 Aligned_cols=338 Identities=11% Similarity=-0.005 Sum_probs=181.7
Q ss_pred CChhHHHHHhccCCC--CChHHHHHHHHHHHhCCC-hhhHHHHHHHHHHc-CCCC-ChhhHHHHhhhccccccCCcCcch
Q 010837 94 GALKYAGQMFDELPQ--RTLSAYNYMIAGYLKNGQ-VEESLSLVRKLVSS-GERP-DGYTFSMILKASTCCRSNVPLPRN 168 (499)
Q Consensus 94 ~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~~~~~~~~~~~~~~~ 168 (499)
|+++.+..+|++... |++..|...+.-..+.++ .+....+|+..... |..| +...|...+..+... ....+..+
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~-~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKI-EDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSC-SSHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhc-hhhhHHHH
Confidence 566666666666543 566666666655555442 34555666665543 3322 445555555443100 01234455
Q ss_pred hHHHHHHHHHHcCCCCchhHHHHHHHHHH-------------hCCChhHHHHHHHhccC----CChHhHHHHHHHHHhCC
Q 010837 169 LGRMVHAQILKCDVKADDVLYTALVDSYV-------------KGGKTSYARIVFDMMLE----KNVICSTSMISGFMSQG 231 (499)
Q Consensus 169 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g 231 (499)
.+..+++..+......-...|......-. ..+.+..|..+++.+.. .+...|...+.--...+
T Consensus 107 ~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~ 186 (493)
T 2uy1_A 107 KIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG 186 (493)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC
Confidence 66666666665221111112222111110 01122233333333221 13335555444432221
Q ss_pred --C-----HHHHHHHHHhcCC--C-ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChH
Q 010837 232 --F-----VEDAEEIFRKTVE--K-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301 (499)
Q Consensus 232 --~-----~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 301 (499)
- .+.+..+|+++.. | ....|...+.-+... ++.+.|..+++..... +.+...+. .|+...+.+
T Consensus 187 ~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~-~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~ 259 (493)
T 2uy1_A 187 MKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI-GQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEE 259 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCT
T ss_pred ccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchh
Confidence 1 2345667777662 3 344455555444443 7788999999988887 23332222 233222212
Q ss_pred HH-HHHHHhcC------------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHcccCcH
Q 010837 302 DA-RRVFDHMQ------------QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG--ALSACGHAGLV 366 (499)
Q Consensus 302 ~a-~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~~~~ 366 (499)
+. ..+.+... ......|...+....+.++.+.|..+|++. .. ...+...|.. .+... ..++.
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~-~~~d~ 336 (493)
T 2uy1_A 260 AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYY-ATGSR 336 (493)
T ss_dssp HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHH-HHCCS
T ss_pred HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHH-HCCCh
Confidence 21 11222110 012245666677776778899999999988 32 1234444432 22222 23368
Q ss_pred HHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 367 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
+.|..+|+...+..+- +...+...++.....|+.+.|..+|+++.. ....|...+.--...|+.+.+..+++++.+
T Consensus 337 ~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 337 ATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999998865432 334566677777888999999999999853 567788888777788999999888888775
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=6.8e-07 Score=80.24 Aligned_cols=163 Identities=7% Similarity=-0.026 Sum_probs=123.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC----hhHH
Q 010837 319 TSMIDGYGKNGNPNQALELFCMMQECCV-QPNYV----TFLGALSACGHAGLVDKGREIFESMERDYSMKPK----MEHY 389 (499)
Q Consensus 319 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~ 389 (499)
...+..+...|++++|.+++++..+... .|+.. .+..+...+...|++++|...++.+.....-.++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346778899999999999999877432 22221 3335667778888999999999999842211223 3368
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----CCch
Q 010837 390 ACMVDLLGRAGSLEQALKFVLEMPE--------KP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-----RPGA 455 (499)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~ 455 (499)
+.+...|...|++++|+..|+++.+ .+ ...++..+...|...|++++|...++++++..... ...+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999988773 11 23478889999999999999999999988743222 1467
Q ss_pred hHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 010837 456 YVALSNTLAAAGK-WDSVTELREKMKL 481 (499)
Q Consensus 456 ~~~l~~~~~~~g~-~~~A~~~~~~~~~ 481 (499)
|..++.+|.+.|+ +++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999995 6999998887654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.4e-08 Score=79.41 Aligned_cols=95 Identities=11% Similarity=0.007 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
...+..+...+.+.|++++|+..|+++.. +.+...|..+..+|...|++++|+..++++++.+|.. +..+..++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE-PRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chHHHHHHHHH
Confidence 34445555555555666666665555543 2345555555555556666666666666666555554 55555566666
Q ss_pred HhcCChHHHHHHHHHHHh
Q 010837 464 AAAGKWDSVTELREKMKL 481 (499)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~ 481 (499)
...|++++|.+.+++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666665555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-07 Score=82.77 Aligned_cols=165 Identities=6% Similarity=-0.076 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHcccCcHHHHHHHHHHchHhcC--CCCC--h
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY-----VTFLGALSACGHAGLVDKGREIFESMERDYS--MKPK--M 386 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~ 386 (499)
..+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...++....... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788899999999999888775322111 2234455667788899999999988873211 1111 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----C
Q 010837 387 EHYACMVDLLGRAGSLEQALKFVLEMPE----KPN-----SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-----R 452 (499)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~ 452 (499)
.+|+.+...|...|++++|+..|+++.. .|+ ..++..+...|...|++++|...++++++..... .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788899999999999999999988763 222 2588889999999999999999999988643221 1
Q ss_pred CchhHHHHHHHHhcCChHHH-HHHHHHHH
Q 010837 453 PGAYVALSNTLAAAGKWDSV-TELREKMK 480 (499)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 480 (499)
..+|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45788899999999999999 77677654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=6e-08 Score=74.64 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
.+......|.+.|++++|++.|++..+ +.+..+|..+..++...|++++|++.++++++.++.. ...|..++.+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHH
Confidence 444455555555555555555555443 2344555555555555555555555555555555554 5555555555555
Q ss_pred cCChHHHHHHHHHHHh
Q 010837 466 AGKWDSVTELREKMKL 481 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~ 481 (499)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.6e-08 Score=74.04 Aligned_cols=108 Identities=9% Similarity=-0.002 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSS 427 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~ 427 (499)
..+......|.+.|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.|++..+ +.+...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 35666677788888888888888887732 44 667788888888888888888888887766 4567788888888
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
+...|++++|++.|+++++..|.. ..++..+..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~-~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSN-EEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCC-HHHHHHHHHh
Confidence 888888888988888888888877 6665555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-07 Score=79.46 Aligned_cols=127 Identities=10% Similarity=-0.100 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcH
Q 010837 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366 (499)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 366 (499)
+..+...+...|++++|...|++...++...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566677788888888888888877777888888888888888888888888877753 44566777777888888888
Q ss_pred HHHHHHHHHchHhcCC-------------CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 367 DKGREIFESMERDYSM-------------KP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 367 ~~a~~~~~~~~~~~~~-------------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
++|...|+...+...- .| ....+..+..+|...|++++|.+.|+++..
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888887742111 11 124455555556666666666666655544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=76.37 Aligned_cols=126 Identities=12% Similarity=0.013 Sum_probs=90.1
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSC 428 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 428 (499)
.+..+...+...|++++|...|+...+. .| +...+..+..++...|++++|++.+++... +.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3555566666777777777777777632 23 566677777777778888888887777665 34567788888888
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCchhHHHH--HHHHhcCChHHHHHHHHHHHh
Q 010837 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALS--NTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 481 (499)
...|++++|.+.++++.+..+.. ...+..+. ..+.+.|++++|.+.++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888888887766 55554433 347778888888888876543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.6e-06 Score=73.36 Aligned_cols=156 Identities=10% Similarity=0.004 Sum_probs=104.9
Q ss_pred CChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc------H
Q 010837 298 GKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPN--QALELFCMMQECCVQPNYVTFLGALSACGHAGL------V 366 (499)
Q Consensus 298 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~ 366 (499)
+++++++.+++++.+ .+..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 667788888887764 46667777777777777777 8888888888764 3466666655555555555 7
Q ss_pred HHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHH-HHHHHHhCCC-----CCCHHHHHHHHHHHhhcCCHHHHHH
Q 010837 367 DKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQ-ALKFVLEMPE-----KPNSDVWAALLSSCRLHDDVEMANI 439 (499)
Q Consensus 367 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 439 (499)
+++.+.++.+... .| |...|+-+...+.+.|+... +..+..++.+ ..+...+..++.++.+.|+.++|.+
T Consensus 203 ~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 7788888777732 45 66777777777777776433 4455555543 2466777777777777788888888
Q ss_pred HHHHHHh-cCCCCCCchhHH
Q 010837 440 AANEIFK-LNANDRPGAYVA 458 (499)
Q Consensus 440 ~~~~~~~-~~~~~~~~~~~~ 458 (499)
+++.+.+ .+|.. ...|..
T Consensus 280 ~~~~l~~~~Dpir-~~yW~~ 298 (306)
T 3dra_A 280 VYDLLKSKYNPIR-SNFWDY 298 (306)
T ss_dssp HHHHHHHTTCGGG-HHHHHH
T ss_pred HHHHHHhccChHH-HHHHHH
Confidence 8887765 45544 344443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-06 Score=77.92 Aligned_cols=124 Identities=8% Similarity=-0.001 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC--CChhHHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTS-MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 362 (499)
.+..+...+.+.|++++|...++++.. |+...... ....+...++.++|...+++..... +.+...+..+..++..
T Consensus 153 a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 153 IGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHH
Confidence 334444455555555555555555443 22221111 1122334444444555555544431 2334444445555555
Q ss_pred cCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 010837 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 410 (499)
.|++++|...|.++.+...-..+...+..++..|...|+.++|...++
T Consensus 232 ~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 232 VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 555555555555555221000113344445555555555544444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.1e-07 Score=72.10 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 010837 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLS 426 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~ 426 (499)
...+..+...+...|++++|...|++.. ...| +...+..+..+|...|++++|++.++++.. +.+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3445555555555666666666666555 2233 445555556666666666666666655544 234556666666
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 467 (499)
++...|++++|.+.++++.+..+.. ...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSC-KEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGG-THHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhc
Confidence 6777777777777777777666655 556666666665554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-07 Score=84.60 Aligned_cols=197 Identities=9% Similarity=-0.008 Sum_probs=148.7
Q ss_pred hhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 010837 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (499)
.+..++|.+++++..+.... . . +...++++.|...|.++ ...|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~--~-------~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S--F-------MKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C--S-------SSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c--c-------cCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 37778899999888765331 1 0 11157889998887764 56788899999999999887
Q ss_pred HHcCC---CC--CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCC--CC--ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 010837 342 QECCV---QP--NYVTFLGALSACGHAGLVDKGREIFESMERDYSM--KP--KMEHYACMVDLLGRAGSLEQALKFVLEM 412 (499)
Q Consensus 342 ~~~~~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (499)
.+... .+ -..+|..+..+|...|++++|...|++..+-..- .+ ...++..+...|.. |++++|++.|++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 65311 11 1347888889999999999999999887632111 12 24577888889988 9999999999887
Q ss_pred CC----CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC-----CchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 413 PE----KPN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR-----PGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 413 ~~----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
.. ..+ ..++..+...+...|++++|++.++++++..+... ...+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 65 111 46788899999999999999999999998654431 236677788888999999999999998
Q ss_pred H
Q 010837 480 K 480 (499)
Q Consensus 480 ~ 480 (499)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-06 Score=78.20 Aligned_cols=213 Identities=13% Similarity=0.098 Sum_probs=157.5
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcC--ChHHHHHHHHhcCC---CChhHHHHHHHHH----HhC---CC
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG--KIDDARRVFDHMQQ---KNVFTWTSMIDGY----GKN---GN 330 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~---g~ 330 (499)
...++|+...+.++..++. +...|+.--.++...| ++++++..++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 4445677777777665432 3345565566666777 88889888888775 3455666554444 444 78
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHH--HHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC------
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD--KGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS------ 401 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~------ 401 (499)
+++++++++++.+.. +-|..+|+.-.-++.+.|.++ ++.+.++.+.+. .| |...|+.-...+...++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhh
Confidence 999999999999864 557777777666667777777 999999999943 44 66677766666666666
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHhcC---CCCCCchhHHHHHHHHhcCChHHHHHH
Q 010837 402 LEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDV-EMANIAANEIFKLN---ANDRPGAYVALSNTLAAAGKWDSVTEL 475 (499)
Q Consensus 402 ~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (499)
++++++.++++.. +-|...|+.+...+.+.|+. +.+..+.+++.+.+ +.. +..+..++.+|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS-SFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHccCCHHHHHHH
Confidence 8899999988775 46788898888888888774 44556777777655 444 77889999999999999999999
Q ss_pred HHHHHh
Q 010837 476 REKMKL 481 (499)
Q Consensus 476 ~~~~~~ 481 (499)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999864
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-07 Score=73.98 Aligned_cols=95 Identities=13% Similarity=-0.004 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
...+..+...+.+.|++++|+..|+++.. +.+...|..+..++...|++++|+..++++++.+|.. +..+..++.+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-PRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-cHHHHHHHHHH
Confidence 34445555556666666666666666544 2345566666666666666666666666666666655 56666666666
Q ss_pred HhcCChHHHHHHHHHHHh
Q 010837 464 AAAGKWDSVTELREKMKL 481 (499)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~ 481 (499)
...|++++|.+.+++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.64 E-value=5.9e-06 Score=79.62 Aligned_cols=339 Identities=9% Similarity=-0.019 Sum_probs=187.1
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHc-CCC-CchhHHHHHHHHHHh
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC-DVK-ADDVLYTALVDSYVK 198 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~ 198 (499)
..-.|+++.+..+|++.... .|+...|...+.-..+.+ ...+....+|+..+.. |.. .+...|...+..+..
T Consensus 24 ~~P~~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~----~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~ 97 (493)
T 2uy1_A 24 LYMSKDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVS----QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGK 97 (493)
T ss_dssp HHHTTCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC--------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSS
T ss_pred HCCCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhC----chHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHh
Confidence 46678999999999998874 578888887777653221 1235667777776654 533 366677777765542
Q ss_pred ----CCChhHHHHHHHhccCC---Ch-HhHHHHHHHHHh-------------CCCHHHHHHHHHhcC----CCChhhHHH
Q 010837 199 ----GGKTSYARIVFDMMLEK---NV-ICSTSMISGFMS-------------QGFVEDAEEIFRKTV----EKDIVVYNA 253 (499)
Q Consensus 199 ----~g~~~~A~~~~~~~~~~---~~-~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~----~~~~~~~~~ 253 (499)
.|+.+.+.++|++.... +. ..|......-.. .+.+..|..+++.+. ..+...|..
T Consensus 98 ~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~ 177 (493)
T 2uy1_A 98 IEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAAR 177 (493)
T ss_dssp CSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 35678888888888552 11 223222211100 011222333333222 112223433
Q ss_pred HHHHHhcCh-h-----hHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-CCh-hHHHHHHHHH
Q 010837 254 MIEGYSISI-E-----TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-KNV-FTWTSMIDGY 325 (499)
Q Consensus 254 ll~~~~~~~-~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-~~~~~l~~~~ 325 (499)
.+.--.... + ..+.+..++++++...+ .+...|...+..+.+.|+.+.|..+|++... |.. ..|. .|
T Consensus 178 y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y 252 (493)
T 2uy1_A 178 LIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YY 252 (493)
T ss_dssp HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HH
T ss_pred HHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HH
Confidence 333321110 0 12345567777766543 3456666667777777888888888876543 221 1222 22
Q ss_pred HhCCChhHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHH
Q 010837 326 GKNGNPNQALELFCMMQECC---------VQP---NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~---------~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 393 (499)
....+.++. ++.+.+.- ..+ ....|...+..+.+.++++.|..+|+++ +..+ .+..+|...+
T Consensus 253 ~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A 326 (493)
T 2uy1_A 253 GLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCA 326 (493)
T ss_dssp HHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHH
T ss_pred HhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHH
Confidence 222222222 22222210 001 1133555555555667788888888887 2322 2334443323
Q ss_pred HHHHh-cCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChH
Q 010837 394 DLLGR-AGSLEQALKFVLEMPE-KP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 394 ~~~~~-~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 470 (499)
..-.. .++.+.|.++|+...+ -| +...+...+.-....|+.+.|..+|+++. . ....|...+..-...|+.+
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k-~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----K-TSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----C-BHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----H-HHHHHHHHHHHHHHCCCHH
Confidence 22222 2368888888887665 12 34455556666677888888888888862 2 2566777777777888888
Q ss_pred HHHHHHHHHHh
Q 010837 471 SVTELREKMKL 481 (499)
Q Consensus 471 ~A~~~~~~~~~ 481 (499)
.+.+++++..+
T Consensus 402 ~~r~v~~~~~~ 412 (493)
T 2uy1_A 402 LFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877663
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=7e-08 Score=86.03 Aligned_cols=188 Identities=10% Similarity=-0.040 Sum_probs=125.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 360 (499)
...+..+...+.+.|++++|...|++..+ | +...|..+..++.+.|++++|...+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34566677788889999999999988764 3 67788888899999999999999999888753 44567788888889
Q ss_pred cccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHH---HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDL---LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
...|++++|...|+...+. .|+ ...+...+.. ..+...+.. ......+.+......+.. + ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 9999999999999887732 231 1111111111 222222222 122222333333333322 2 3688899
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 010837 437 ANIAANEIFKLNANDRPGAYVALSNTLAAA-GKWDSVTELREKMKLR 482 (499)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 482 (499)
|.+.++++.+..+.. ......+...+.+. +++++|.++|++..+.
T Consensus 154 A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDD-GHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccch-hhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999888888877755 55556666666665 6788899999887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-07 Score=86.02 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=104.3
Q ss_pred CChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHH
Q 010837 298 GKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 298 g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
+++++|...|+...+ | +...+..+...+.+.|++++|...|++..+.. |+...+ ..+.+..+-
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~- 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ- 192 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-
Confidence 344444444444332 1 34456666666777777777777777666542 221000 001111000
Q ss_pred HchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC
Q 010837 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (499)
. .....|..+..+|.+.|++++|+..++++.. +.+...|..+..+|...|++++|+..|+++++..|..
T Consensus 193 ~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~- 263 (336)
T 1p5q_A 193 A--------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN- 263 (336)
T ss_dssp H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-
T ss_pred H--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-
Confidence 0 0135677788888888888888888887766 4567788888888888899999999999998888877
Q ss_pred CchhHHHHHHHHhcCChHHH-HHHHHHHH
Q 010837 453 PGAYVALSNTLAAAGKWDSV-TELREKMK 480 (499)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 480 (499)
..++..+..++.+.|++++| ...++.|.
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888 34555553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-07 Score=70.14 Aligned_cols=113 Identities=16% Similarity=0.174 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSC 428 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 428 (499)
..+..+...+...|++++|.+.++++.... +.+...+..+...+.+.|++++|...++++.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 445555555666666666666666665321 12445556666666666666666666666544 33555666666777
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
...|++++|...++++.+..|.. ...+..+..++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhc
Confidence 77777777777777777766655 55566665555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.6e-07 Score=71.27 Aligned_cols=117 Identities=5% Similarity=-0.091 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 010837 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSS 427 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~ 427 (499)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++... +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3445556666666777777777777766321 12455666677777777777777777776654 3346677777778
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCCh
Q 010837 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 469 (499)
+...|++++|...++++.+..+.. ...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDN-ETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHhcC
Confidence 888888888888888888877766 67777777777777764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.6e-07 Score=78.41 Aligned_cols=184 Identities=10% Similarity=-0.030 Sum_probs=128.4
Q ss_pred hcCChHHHHHHHHhcCCC---ChhHHHHH-------HHHHHhCCChhHHHHHHHHHHHcCCCCC----------------
Q 010837 296 KCGKIDDARRVFDHMQQK---NVFTWTSM-------IDGYGKNGNPNQALELFCMMQECCVQPN---------------- 349 (499)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~---~~~~~~~l-------~~~~~~~g~~~~a~~~~~~m~~~~~~p~---------------- 349 (499)
..++.+.|.+.|.++.+- ....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 467888888888887652 44566666 3455555555555555544333 2221
Q ss_pred ------HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 010837 350 ------YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS----D 419 (499)
Q Consensus 350 ------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~ 419 (499)
......+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12233455667788999999999988872 3464336666677888999999999999877654433 3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNAND--RPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 484 (499)
.+..+..++...|++++|+..|++.......| ........+.++.+.|+.++|..+|+++...+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67778888999999999999999887533213 234677888889999999999999999887543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=9.7e-08 Score=75.83 Aligned_cols=97 Identities=6% Similarity=-0.050 Sum_probs=62.8
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSC 428 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 428 (499)
.+..+...+.+.|++++|...|+.+.. +.| +...|..+..+|...|++++|++.|+++.. +.+...|..+..+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455555666666777777777766662 234 556666666677777777777777766655 33456666677777
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCC
Q 010837 429 RLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
...|++++|+..|+++++..+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 77777777777777777666544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=77.96 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=89.9
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHH-HHhcCCH
Q 010837 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDL-LGRAGSL 402 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~~~~ 402 (499)
+...|++++|...+++..+.. +.+...+..+..+|...|++++|...|+++.+. .| +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 345678888888888877753 446677888888888888888888888888743 23 56667777777 6678887
Q ss_pred --HHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 403 --EQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 403 --~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
++|...++++.. +.+...+..+...+...|++++|...++++++..+..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 888888887765 3456777788888888888888888888888877765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-06 Score=73.85 Aligned_cols=150 Identities=11% Similarity=-0.068 Sum_probs=67.0
Q ss_pred hcCChHHHHH---HHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHcccCcHH
Q 010837 296 KCGKIDDARR---VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC----CVQP-NYVTFLGALSACGHAGLVD 367 (499)
Q Consensus 296 ~~g~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~ 367 (499)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+. +..+ ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 433322223445555556666666666666666555431 1111 1233444555555555555
Q ss_pred HHHHHHHHchHh---cCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCH----HHHHHHHHHHhhcCCH
Q 010837 368 KGREIFESMERD---YSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPNS----DVWAALLSSCRLHDDV 434 (499)
Q Consensus 368 ~a~~~~~~~~~~---~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~ 434 (499)
+|...+++..+. .+-.+ ....+..+...+...|++++|.+.+++... ..+. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 555555554422 11011 122344444555555555555555544432 1111 1233444444445555
Q ss_pred HHHHHHHHHHH
Q 010837 435 EMANIAANEIF 445 (499)
Q Consensus 435 ~~a~~~~~~~~ 445 (499)
++|.+.+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55544444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.1e-07 Score=75.42 Aligned_cols=153 Identities=10% Similarity=0.007 Sum_probs=70.0
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchH---hcCCCC-ChhHHHHHHHHHHhcCCH
Q 010837 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER---DYSMKP-KMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~p-~~~~~~~l~~~~~~~~~~ 402 (499)
..|++++|.++++.+.. ........+..+...+...|++++|...+++... ..+..+ ...++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 1112334455555555555555555555555442 111222 334455555555555555
Q ss_pred HHHHHHHHhCCC----CC-C----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----CCchhHHHHHHHHhcCC
Q 010837 403 EQALKFVLEMPE----KP-N----SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-----RPGAYVALSNTLAAAGK 468 (499)
Q Consensus 403 ~~a~~~~~~~~~----~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~ 468 (499)
++|.+.+++... .+ + ...+..+...+...|++++|...+++..+..... ...++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 555555554433 11 1 1234445555555555555555555554321110 01224455555555555
Q ss_pred hHHHHHHHHHHH
Q 010837 469 WDSVTELREKMK 480 (499)
Q Consensus 469 ~~~A~~~~~~~~ 480 (499)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.9e-07 Score=68.05 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=74.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC--CCCchhHHHH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN--DRPGAYVALS 460 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 460 (499)
+...+..+...+...|++++|...|+++.. +.+...+..+...+...|++++|.+.++++++..+. . ...+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHHHHHH
Confidence 345566677777778888888888777655 345667777778888888888888888888887776 5 67778888
Q ss_pred HHHHhc-CChHHHHHHHHHHHhCC
Q 010837 461 NTLAAA-GKWDSVTELREKMKLRG 483 (499)
Q Consensus 461 ~~~~~~-g~~~~A~~~~~~~~~~~ 483 (499)
.++.+. |++++|.+.+++..+.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 888888 88888888888877654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-06 Score=76.80 Aligned_cols=157 Identities=11% Similarity=-0.027 Sum_probs=120.9
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCC-----C----hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CC----HHHHHH
Q 010837 290 LVDMYAKCGKIDDARRVFDHMQQK-----N----VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ-PN----YVTFLG 355 (499)
Q Consensus 290 l~~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 355 (499)
.+..+...|++++|..++++..+. + ...+..+...+...|++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356788899999999999887642 1 113345667777788999999999999874322 22 236888
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhc----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCC-HHHHH
Q 010837 356 ALSACGHAGLVDKGREIFESMERDY----SMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-------KPN-SDVWA 422 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~-~~~~~ 422 (499)
+..+|...|++++|...|+++.+.. +..+ ...++..+...|.+.|++++|++.+++..+ .+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999888421 2222 234788899999999999999999988765 122 57889
Q ss_pred HHHHHHhhcC-CHHHHHHHHHHHHh
Q 010837 423 ALLSSCRLHD-DVEMANIAANEIFK 446 (499)
Q Consensus 423 ~l~~~~~~~~-~~~~a~~~~~~~~~ 446 (499)
.+..++...| ++++|.+.+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 57999999998876
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-06 Score=78.00 Aligned_cols=159 Identities=11% Similarity=-0.038 Sum_probs=114.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC--C-C------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HHHH
Q 010837 288 SALVDMYAKCGKIDDARRVFDHMQQ--K-N------VFTWTSMIDGYGKNGNPNQALELFCMMQECCV---QPN--YVTF 353 (499)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~--~-~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~~~~ 353 (499)
...+..+...|++++|.+.+.+..+ + . ...+..+...+...|++++|...+++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3355667788888888888876543 1 1 12234456667778899999999988875321 112 3478
Q ss_pred HHHHHHHcccCcHHHHHHHHHHchH---hcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C------C-CHHH
Q 010837 354 LGALSACGHAGLVDKGREIFESMER---DYSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPE-K------P-NSDV 420 (499)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~------~-~~~~ 420 (499)
+.+...|...|++++|...++++.. ..+..+ ...++..+...|...|++++|++.+++... . . -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 8888889999999999999988872 222222 125788888999999999999999887664 1 1 1567
Q ss_pred HHHHHHHHhhcCCHHHH-HHHHHHHHh
Q 010837 421 WAALLSSCRLHDDVEMA-NIAANEIFK 446 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a-~~~~~~~~~ 446 (499)
|..+...|...|++++| ...++++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88888999999999999 777887765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=7e-07 Score=68.59 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
.+..+...+.+.|++++|+..|++... +.+...|..+..++...|++++|+..++++++.+|.. ...+..++.+|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHH
Confidence 344444455555555555555555443 2344555555555555555555555555555555554 5555555555555
Q ss_pred cCChHHHHHHHHHHHh
Q 010837 466 AGKWDSVTELREKMKL 481 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~ 481 (499)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=70.56 Aligned_cols=127 Identities=10% Similarity=-0.045 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHH
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVD 394 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 394 (499)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .| +...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 345666667777777777777777776642 335666777777777778888888888777732 23 5666777777
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCHHHHHH--HHHHHhhcCCHHHHHHHHHHHHh
Q 010837 395 LLGRAGSLEQALKFVLEMPE--KPNSDVWAA--LLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
++...|++++|.+.|+++.. +.+...+.. ++..+...|++++|.+.++....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 78888888888888877665 234444433 33336677888888887776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.2e-07 Score=69.43 Aligned_cols=94 Identities=7% Similarity=-0.031 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCC------chhHHH
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP------GAYVAL 459 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 459 (499)
.+..+...+.+.|++++|++.|++..+ +.+..+|..+..+|...|++++|++.++++++..+.... .+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344555556666666666666665544 334555666666666666666666666666655443311 245555
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 010837 460 SNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+.++...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5666666666666666666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.3e-07 Score=72.17 Aligned_cols=104 Identities=13% Similarity=-0.019 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 010837 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALL 425 (499)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~ 425 (499)
+...+..+...+...|++++|...|++..+. .| +...|..+..+|.+.|++++|+..|++... +.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4567788888899999999999999999843 45 677888999999999999999999998876 45678899999
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCCCchh
Q 010837 426 SSCRLHDDVEMANIAANEIFKLNANDRPGAY 456 (499)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (499)
.++...|++++|.+.|+++++..+.. ...+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 116 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNG-GSDA 116 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSS-CCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCc-hHHH
Confidence 99999999999999999999988877 5544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.1e-07 Score=72.88 Aligned_cols=99 Identities=8% Similarity=-0.037 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 010837 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLS 426 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~ 426 (499)
...+..+...+...|++++|...|+.+... .| +...|..+..+|...|++++|++.|+++.. +.+...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 345566667777888888888888887732 34 666777788888888888888888887765 345677777888
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
++...|++++|...|+++++..+..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 8888888888888888888877654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.4e-07 Score=74.56 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=49.2
Q ss_pred cCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH-HhhcCCH--HH
Q 010837 363 AGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSS-CRLHDDV--EM 436 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~-~~~~~~~--~~ 436 (499)
.|++++|...++..... .| +...+..+...|...|++++|+..|+++.. +.+...+..+..+ +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34444444444444421 12 334444444444444444444444444433 2233344444444 3344444 44
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
|...++++++..|.. ...+..++.+|...|++++|...+++..+
T Consensus 100 A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444444444443 44444444444444444444444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=8e-07 Score=74.53 Aligned_cols=169 Identities=9% Similarity=0.015 Sum_probs=97.4
Q ss_pred HHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 370 (499)
....|+++++.+.++.-.+. ....+..+...+...|++++|...|++..+.. |+...+... ....-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~~~ 83 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLDKK 83 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHHHH
Confidence 34445555555555543321 33455566666677777777777777766642 211100000 000000
Q ss_pred HHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 371 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
.. .....+..+..+|...|++++|+..+++... +.+...+..+..++...|++++|...|+++++..
T Consensus 84 ---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 84 ---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 00 0125677778888888888888888887765 4567788888888999999999999999999888
Q ss_pred CCCCCchhHHHHHHHHhcCChHHHH-HHHHHHHhCCC
Q 010837 449 ANDRPGAYVALSNTLAAAGKWDSVT-ELREKMKLRGV 484 (499)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~ 484 (499)
|.. ..++..+..++...|+.+++. ..+..|...+.
T Consensus 153 p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 153 PNN-LDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp TTC-HHHHHHHHHHHHHHHHHHC--------------
T ss_pred CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 877 788888888888888877776 56666655543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=6.9e-07 Score=68.05 Aligned_cols=94 Identities=14% Similarity=0.034 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
.+..+...+.+.|++++|+..|+++.. +.+...|..+..++...|++++|+..++++++.+|.. ...+..++.+|.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 355667778899999999999998876 4477888889999999999999999999999999987 8899999999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 010837 466 AGKWDSVTELREKMKLR 482 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~~ 482 (499)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-06 Score=67.25 Aligned_cols=100 Identities=11% Similarity=-0.051 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 010837 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAAL 424 (499)
Q Consensus 348 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l 424 (499)
.+...+..+...+...|++++|...|+..... .| +...+..+..++...|++++|+..+++... +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34556666666666667777777776666632 23 455666666666666666666666666554 3345566666
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
..++...|++++|...++++++..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 66666666666666666666665544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=67.61 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
+...+..+...+...|++++|.+.|++... +.+...+..+...+...|++++|...++++++..+.. ...+..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHHHHH
Confidence 567788899999999999999999998776 3478899999999999999999999999999998876 8899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 010837 463 LAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~ 483 (499)
|.+.|++++|.+.+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999988754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=66.11 Aligned_cols=97 Identities=19% Similarity=0.271 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
...+..+...+...|++++|.+.++++.. +.+..++..+...+...|++++|...++++.+..+.. ..++..++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHH
Confidence 56788889999999999999999998875 4567889999999999999999999999999998876 78899999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 010837 464 AAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~ 483 (499)
...|++++|.+.++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999988754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=67.46 Aligned_cols=94 Identities=9% Similarity=-0.060 Sum_probs=58.6
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSC 428 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 428 (499)
.+......+.+.|++++|...|++..+. .| +...|..+..+|.+.|++++|+..+++... +.+...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444555556666666666666666522 23 455666666666666666666666666554 33455666666677
Q ss_pred hhcCCHHHHHHHHHHHHhcC
Q 010837 429 RLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~ 448 (499)
...|++++|...++++++..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 77777777777777776665
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.7e-06 Score=72.06 Aligned_cols=126 Identities=10% Similarity=-0.050 Sum_probs=62.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC--hhHHHHHHHHHHh
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK--MEHYACMVDLLGR 398 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 398 (499)
+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+... ... .|. ...+..+..++..
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHHHH
Confidence 344455555555555555555442 2332233333334555566666666655443 111 111 2244555555666
Q ss_pred cCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 399 AGSLEQALKFVLEMPEK---PN--SDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 399 ~~~~~~a~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
.|++++|++.|++.... |. .........++.+.|+.++|...|+++...+|.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66666666666655432 21 224444555556666666666666666665554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-06 Score=64.34 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
+..+...+...|++++|.+.|++... +.+...+..+...+...|++++|...++++.+..+.. ...+..++.++...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHH
Confidence 33444444444444444444444433 2234444444444445555555555555555444443 44444555555555
Q ss_pred CChHHHHHHHHHHHh
Q 010837 467 GKWDSVTELREKMKL 481 (499)
Q Consensus 467 g~~~~A~~~~~~~~~ 481 (499)
|++++|.+.+++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.1e-06 Score=66.06 Aligned_cols=98 Identities=5% Similarity=-0.085 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPK----MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAAL 424 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l 424 (499)
..+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|++.+++... +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 334444444444455555555544444 22332 33444444445555555555555544433 2234444555
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..++...|++++|...++++++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 555555555555555555555554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-06 Score=64.37 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=59.8
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSC 428 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 428 (499)
.+..+...+...|++++|...++..... .| +...+..+..++...|++++|...+++... +.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444455555556666666666655522 22 445555556666666666666666655544 23455666666666
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 010837 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALS 460 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 460 (499)
...|++++|.+.++++.+.++.. ...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANN-PQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHH
Confidence 66677777777777666666554 44444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=69.01 Aligned_cols=97 Identities=14% Similarity=-0.021 Sum_probs=65.4
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSC 428 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 428 (499)
.+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|+..|++... +.+...+..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3444555666677777777777776632 34 556666677777777777777777776655 34456666777777
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCC
Q 010837 429 RLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
...|++++|...++++++..|..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Confidence 77777777777777777776654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.4e-06 Score=69.08 Aligned_cols=97 Identities=12% Similarity=-0.015 Sum_probs=75.3
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACM 392 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 392 (499)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..+|...|++++|...+++..+. .| +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 45567777888888888888888888887753 346677788888888888888888888888732 44 56778888
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC
Q 010837 393 VDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
..+|...|++++|++.|++...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 8888888888888888887765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-06 Score=78.29 Aligned_cols=119 Identities=13% Similarity=-0.018 Sum_probs=80.2
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC--CC----------------hhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KN----------------VFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788899999999999999999998764 32 356666666666677777777777766664
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 010837 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 405 (499)
. +.+...+..+..+|...|++++|...|+++.+ +.| +...+..+..++.+.|++++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 33455666666666666666666666666662 234 445556666666666666655
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=2.5e-06 Score=65.50 Aligned_cols=112 Identities=16% Similarity=0.016 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDL 395 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 395 (499)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++..... .| +...+..+...
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHHHH
Confidence 34444455555555555555555554431 223444555555555555555555555555522 22 34445555555
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcC
Q 010837 396 LGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHD 432 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 432 (499)
+...|++++|.+.|++... +.+...+..+..++...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 5555555555555555443 223444444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-06 Score=66.65 Aligned_cols=96 Identities=8% Similarity=-0.072 Sum_probs=54.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
+...+..+...+...|++++|+..|++... +.+...|..+..++...|++++|...++++++.++.. ...+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHHHHHH
Confidence 344555555555666666666666655443 2334555555555666666666666666666655554 5555566666
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 010837 463 LAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~ 481 (499)
|...|++++|...+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666665555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=6e-06 Score=65.11 Aligned_cols=98 Identities=14% Similarity=0.065 Sum_probs=88.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (499)
+...+..+...+...|++++|.+.|++... .|+ ...+..+...+...|++++|+..++++++..+.. ...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HHHHHHH
Confidence 567788899999999999999999999876 466 6788889999999999999999999999998877 8899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 010837 460 SNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+.+|...|++++|.+.+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999988754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00028 Score=63.65 Aligned_cols=177 Identities=11% Similarity=0.012 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhc-C-ChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChh------
Q 010837 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC-G-KIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPN------ 332 (499)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~------ 332 (499)
..++++.+++.++...++ +..+|+.-..++.+. + ++++++.+++++.+. |..+|+.-.-.+.+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp CHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhh
Confidence 345555555555554332 333444444444444 5 677888888887763 5556665555555545555
Q ss_pred --HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc-------HHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCH
Q 010837 333 --QALELFCMMQECCVQPNYVTFLGALSACGHAGL-------VDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 333 --~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 402 (499)
++++.++++.+.. .-|...|+.....+.+.+. ++++.+.++++.. ..| |...|+-+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 183 WGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCC
Confidence 7888888887764 4466677776666666664 6777777777773 345 566666655555555442
Q ss_pred --------------------HHHHHHHHhCCC--------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010837 403 --------------------EQALKFVLEMPE--------KPNSDVWAALLSSCRLHDDVEMANIAANEIF 445 (499)
Q Consensus 403 --------------------~~a~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (499)
....+...++.. .++...+..|+..|...|+.++|.++++.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 233333333332 1445566666666666666666666666654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=9.3e-07 Score=74.12 Aligned_cols=139 Identities=9% Similarity=-0.019 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CCh----------------hHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNV----------------FTWTSMID 323 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~----------------~~~~~l~~ 323 (499)
+.++.+.+.++...+... .....+..+...+.+.|++++|...|++..+ .+. ..|..+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp ----CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 444455544443222111 1344567788889999999999999998764 222 56666666
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCH
Q 010837 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 402 (499)
++...|++++|+..+++..+.. +.+...+..+..+|...|++++|...|+...+. .| +...+..+..++...++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776642 335556666666677777777777777766622 33 445555566655555555
Q ss_pred HHHH
Q 010837 403 EQAL 406 (499)
Q Consensus 403 ~~a~ 406 (499)
+++.
T Consensus 173 ~~~~ 176 (198)
T 2fbn_A 173 RKKD 176 (198)
T ss_dssp HC--
T ss_pred HHHH
Confidence 5544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.29 E-value=9e-06 Score=72.25 Aligned_cols=188 Identities=9% Similarity=-0.030 Sum_probs=123.2
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHH
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIA 119 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~ 119 (499)
.+...+..+...+...|++++|...++..++.. +.+...+..+...|.+.|++++|...+++..+ .+...|..+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 355677888889999999999999999999886 45788999999999999999999999998764 46678999999
Q ss_pred HHHhCCChhhHHHHHHHHHHcCCCCCh-hhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010837 120 GYLKNGQVEESLSLVRKLVSSGERPDG-YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198 (499)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (499)
++...|++++|++.|++..+.+ |+. ..+...+... . ..... ..+........+.+......+... .
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~-----~---~~~~~-~~~~~~~~~~~~~~~~i~~~l~~l--~ 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSA-----L---RIAKK-KRWNSIEERRIHQESELHSYLTRL--I 147 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHH-----H---HHHHH-HHHHHHHHTCCCCCCHHHHHHHHH--H
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHH-----H---HHHHH-HHHHHHHHHHHhhhHHHHHHHHHH--H
Confidence 9999999999999999987642 211 0111111110 0 00011 112222333344444444444332 2
Q ss_pred CCChhHHHHHHHhccCCC---hHhHHHHHHHHHhC-CCHHHHHHHHHhcC
Q 010837 199 GGKTSYARIVFDMMLEKN---VICSTSMISGFMSQ-GFVEDAEEIFRKTV 244 (499)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~-g~~~~a~~~~~~~~ 244 (499)
.|++++|++.++...+.+ ......+...+.+. +.+++|.++|.+..
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 577788877777765532 22333333334443 55677777776665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.2e-06 Score=78.50 Aligned_cols=188 Identities=9% Similarity=-0.060 Sum_probs=117.0
Q ss_pred HHHhcCChHHHHHHHHhcCCC-----C---------------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCH-
Q 010837 293 MYAKCGKIDDARRVFDHMQQK-----N---------------VFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNY- 350 (499)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~~-----~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~- 350 (499)
.+.+.|++++|.+.|.++.+. + ...+..++..|...|++++|.+++.++...- ..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345566666666666655421 0 1135667777888888888888877765421 11111
Q ss_pred ---HHHHHHHHHHcccCcHHHHHHHHHHchHh---cCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC
Q 010837 351 ---VTFLGALSACGHAGLVDKGREIFESMERD---YSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-------KP 416 (499)
Q Consensus 351 ---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~ 416 (499)
.+.+.+-..+...|+.+.|..+++..... .+..+ ...++..|...|...|++++|..++++... ++
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 12233334455667788888777766531 12222 245677788888888888888888776543 11
Q ss_pred -CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC---CC---CCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 417 -NSDVWAALLSSCRLHDDVEMANIAANEIFKLNA---ND---RPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 417 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
...++..++..|...|++++|..+++++....+ .+ ....+..++..+...|++++|...+.+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 245677788888888888888888887765321 11 12345666677778888888877766654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.5e-06 Score=63.58 Aligned_cols=59 Identities=8% Similarity=-0.094 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
+..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|++.++...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444455555555554444431 2233344444444444444444444444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.8e-05 Score=70.06 Aligned_cols=213 Identities=14% Similarity=0.105 Sum_probs=146.6
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcC-ChHHHHHHHHhcCC---CChhHHHHHHHHHHhC-C-ChhHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG-KIDDARRVFDHMQQ---KNVFTWTSMIDGYGKN-G-NPNQALE 336 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-g-~~~~a~~ 336 (499)
...++|+++++.++..++. +..+|+.--..+...| .+++++.+++.+.. .+..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4555777777777776543 3445666566666777 59999999999875 3667788777777666 6 8999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHcccCcHH--------HHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC------
Q 010837 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVD--------KGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS------ 401 (499)
Q Consensus 337 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~------ 401 (499)
+++++.+.. +-|...|+.-.-++.+.|..+ ++.+.++++.+. .| |...|+.....+.+.++
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchH
Confidence 999998864 446667665544444444444 889999998843 44 67778777777777776
Q ss_pred -HHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCH--------------------HHHHHHHHHHHhcCC-----CCCC
Q 010837 402 -LEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDV--------------------EMANIAANEIFKLNA-----NDRP 453 (499)
Q Consensus 402 -~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~~-----~~~~ 453 (499)
++++++.++++.. +-|...|+.+-..+.+.|.. ....+...++..... ..++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 7888888887765 45777887766666665543 333333333333320 1235
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
.....++.+|...|+.++|.++++.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 677889999999999999999999985
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-05 Score=77.14 Aligned_cols=160 Identities=11% Similarity=0.042 Sum_probs=101.4
Q ss_pred CChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHH
Q 010837 298 GKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 298 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
+++++|...|+...+ .....|..+...+.+.|++++|...|++..+.. |+... .. -+...
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~----------~~-~~~~~---- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYG----------LS-EKESK---- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCS----------CC-HHHHH----
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--ccccc----------CC-hHHHH----
Confidence 344445544443332 134466667777777777777777777776531 11100 00 00000
Q ss_pred HchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC
Q 010837 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (499)
+.. ......|..+..+|.+.|++++|+..++++.. +.+...|..+..+|...|++++|+..|+++++..|..
T Consensus 311 ~~~-----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~- 384 (457)
T 1kt0_A 311 ASE-----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN- 384 (457)
T ss_dssp HHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Confidence 000 01135677788888888888888888888766 4567788888888888888999988888888888877
Q ss_pred CchhHHHHHHHHhcCChHHHHH-HHHHHH
Q 010837 453 PGAYVALSNTLAAAGKWDSVTE-LREKMK 480 (499)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 480 (499)
..++..+..++.+.|+++++.+ .++.|.
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888887764 444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-06 Score=83.24 Aligned_cols=116 Identities=12% Similarity=0.012 Sum_probs=89.0
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCH
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDV 434 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 434 (499)
..+.+.|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++..+ +.+..+|..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456778888888888888733 44 577788888888888888888888887765 34677888888889999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHH--HHhcCChHHHHHHHH
Q 010837 435 EMANIAANEIFKLNANDRPGAYVALSNT--LAAAGKWDSVTELRE 477 (499)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 477 (499)
++|++.++++++..+.. ...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTC-TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999888876 6777777777 788899999988887
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-05 Score=64.74 Aligned_cols=129 Identities=16% Similarity=0.000 Sum_probs=76.2
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHH
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPK----MEHYACMVDLLGRAGSLEQALKFVLEMPE----KPN----SDV 420 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~ 420 (499)
+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++... .++ ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444555555555555555554421100011 13455566666667777777666665543 111 345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----CCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLNAND-----RPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+..+...+...|++++|.+.+++.++..... ....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666777777788888887777776542111 134567788888888888888888877654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00015 Score=68.71 Aligned_cols=186 Identities=12% Similarity=0.041 Sum_probs=135.3
Q ss_pred HHHHHhCCChhHHHHHHHhccCCC--------------------hHhHHHHHHHHHhCCCHHHHHHHHHhcCC-----CC
Q 010837 193 VDSYVKGGKTSYARIVFDMMLEKN--------------------VICSTSMISGFMSQGFVEDAEEIFRKTVE-----KD 247 (499)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~ 247 (499)
...+.+.|++++|++.|..+.+.+ ..++..+...|...|++++|.+.+.+..+ ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 345677889999999888874320 12467788899999999999999987752 11
Q ss_pred ---hhhHHHHHHHHhcChhhHHHHHHHHHHHHHcc----cCCC-chhHHHHHHHHHhcCChHHHHHHHHhcCC-------
Q 010837 248 ---IVVYNAMIEGYSISIETARKALEVHCQLIKNV----FFED-VKLGSALVDMYAKCGKIDDARRVFDHMQQ------- 312 (499)
Q Consensus 248 ---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------- 312 (499)
.......+..+....+..+.+..++....... ..+. ..++..+...|...|++++|..+++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 12344456666667788889999888776532 2222 34677889999999999999999987652
Q ss_pred -C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc--CC-CC-C--HHHHHHHHHHHcccCcHHHHHHHHHHchH
Q 010837 313 -K-NVFTWTSMIDGYGKNGNPNQALELFCMMQEC--CV-QP-N--YVTFLGALSACGHAGLVDKGREIFESMER 378 (499)
Q Consensus 313 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~-~p-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (499)
+ ....+..++..|...|++++|..++++.... .. .| . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2457888899999999999999999887542 11 12 1 24566777788899999999988877763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.19 E-value=9.1e-06 Score=63.82 Aligned_cols=90 Identities=13% Similarity=0.027 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CCC-------------HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-------CC
Q 010837 391 CMVDLLGRAGSLEQALKFVLEMPE-KPN-------------SDVWAALLSSCRLHDDVEMANIAANEIFKL-------NA 449 (499)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~ 449 (499)
.....+.+.|++++|++.|++... .|+ ...|..+..++...|++++|+..++++++. +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 334444555555555555555444 122 237777788888888888888888888887 77
Q ss_pred CCCCchh----HHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 450 NDRPGAY----VALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 450 ~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.. ...| ...+.++...|++++|+..|++..+
T Consensus 96 d~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66 7777 8888888888888888888888765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.19 E-value=7.5e-06 Score=75.81 Aligned_cols=136 Identities=10% Similarity=0.002 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHH
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVD 394 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 394 (499)
..+..+...+.+.|++++|++.|++..+. .++.. .... .+... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 45666777777778888888877777652 01000 0000 11111 1223 4567888999
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHH
Q 010837 395 LLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 472 (499)
+|.+.|++++|++.++++.+ +.+...|..+..+|...|++++|++.|+++++..|.. ...+..+..++.+.++.+++
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876 3467889999999999999999999999999999886 78888899999888888877
Q ss_pred HH
Q 010837 473 TE 474 (499)
Q Consensus 473 ~~ 474 (499)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.3e-06 Score=66.01 Aligned_cols=130 Identities=9% Similarity=-0.006 Sum_probs=70.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHcccCcHHHHHHHHHHchHhc---CCCC-ChhH
Q 010837 318 WTSMIDGYGKNGNPNQALELFCMMQECCV-QPN----YVTFLGALSACGHAGLVDKGREIFESMERDY---SMKP-KMEH 388 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~ 388 (499)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..... +..+ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444445555555555555554433210 011 1244455555556666666666665554211 1001 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE----KPN----SDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
+..+...+...|++++|.+.+++... ..+ ..++..+...+...|++++|.+.+++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55666666677777777776665543 111 345666777778888888888888877654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-05 Score=58.92 Aligned_cols=99 Identities=3% Similarity=-0.124 Sum_probs=85.9
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CC--ChHHHHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QR--TLSAYNY 116 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~--~~~~~~~ 116 (499)
|.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...|++.. .. +...|..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 4567778888889999999999999999999886 4577888889999999999999999998765 34 5778999
Q ss_pred HHHHHHhC-CChhhHHHHHHHHHHcC
Q 010837 117 MIAGYLKN-GQVEESLSLVRKLVSSG 141 (499)
Q Consensus 117 li~~~~~~-g~~~~a~~~~~~m~~~g 141 (499)
+...+.+. |++++|++.+++....+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999999 99999999999998763
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00029 Score=63.19 Aligned_cols=181 Identities=11% Similarity=0.043 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcC--ChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCC-hhHHHHHH
Q 010837 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG--KIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGN-PNQALELF 338 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~-~~~a~~~~ 338 (499)
.++++.+++.+....++ +..+|+.-.-++.+.| .+++++.+++++.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 45666666666665432 4455555555555666 36777777777764 355666666666666676 47777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHccc--------------CcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhc----
Q 010837 339 CMMQECCVQPNYVTFLGALSACGHA--------------GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRA---- 399 (499)
Q Consensus 339 ~~m~~~~~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---- 399 (499)
+++.+.. +-|...|+.....+.+. +.++++.+.+..... ..| |...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCcc
Confidence 7777754 33555555443333222 346666666666662 244 455554433333333
Q ss_pred -------CCHHHHHHHHHhCCC-CCCHHHHHHHHH-----HHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 400 -------GSLEQALKFVLEMPE-KPNSDVWAALLS-----SCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 400 -------~~~~~a~~~~~~~~~-~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+.++++++.++++.+ .|+. .|..+.. +....|..+++...+.++++.+|.-
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 234455555555444 2332 1221111 1112344555555555555555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-05 Score=61.82 Aligned_cols=94 Identities=11% Similarity=-0.003 Sum_probs=59.5
Q ss_pred HHHHHHcccCcHHHHHHHHHHchHhcCCCC-Ch---hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHH
Q 010837 355 GALSACGHAGLVDKGREIFESMERDYSMKP-KM---EHYACMVDLLGRAGSLEQALKFVLEMPE-KPN----SDVWAALL 425 (499)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----~~~~~~l~ 425 (499)
.+...+...|++++|...|+.+.+. .| +. ..+..+..++.+.|++++|...|+++.. .|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3445566677777777777777633 23 22 3556666667777777777777766654 232 45566666
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 426 SSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.++...|++++|...++++++..|..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 67777777777777777777666544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=5.1e-06 Score=63.15 Aligned_cols=91 Identities=12% Similarity=0.008 Sum_probs=46.6
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD 433 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 433 (499)
...+.+.|++++|...|+...+. .| +...|..+..++...|++++|+..|++... +.+...+..+..++...|+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33444555555555555555522 23 444555555555555555555555555544 2234455555555555566
Q ss_pred HHHHHHHHHHHHhcCCC
Q 010837 434 VEMANIAANEIFKLNAN 450 (499)
Q Consensus 434 ~~~a~~~~~~~~~~~~~ 450 (499)
+++|+..++++++..|.
T Consensus 101 ~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCcC
Confidence 66666666655554443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.2e-06 Score=77.43 Aligned_cols=148 Identities=8% Similarity=-0.061 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 315 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777788888899999999999988774 454431 233344444433221 135777788
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH-HhcCChHH
Q 010837 395 LLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL-AAAGKWDS 471 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 471 (499)
+|.+.|++++|+..+++... +.+...|..+..+|...|++++|+..|+++++..|.. ..++..+..+. ...+..+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887765 3467788888888888888888888888888877766 66676666663 34556677
Q ss_pred HHHHHHHHHhCC
Q 010837 472 VTELREKMKLRG 483 (499)
Q Consensus 472 A~~~~~~~~~~~ 483 (499)
+.+.+++|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 777777776543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=7.9e-06 Score=62.69 Aligned_cols=109 Identities=8% Similarity=-0.001 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C---CC----HHHH
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--K---PN----SDVW 421 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~----~~~~ 421 (499)
..+..+...+...|++++|...++...... +.+...+..+...|...|++++|...++++.. + ++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456667777778888888888888877331 23566777777888888888888888877665 1 12 5677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
..+..++...|++++|.+.++++.+..+. ......+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 77777788888888888888888777653 34444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=7.6e-06 Score=62.78 Aligned_cols=109 Identities=15% Similarity=0.074 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCC-CCC----hhHHH
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM-KPK----MEHYA 390 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~----~~~~~ 390 (499)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++.+.....- .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455666667777777777777777776653 345566666677777777777777777776632110 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 010837 391 CMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALL 425 (499)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~ 425 (499)
.+..+|...|++++|.+.|+++.. .|+......+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 677777777777777777776655 34544444433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.6e-05 Score=59.73 Aligned_cols=90 Identities=12% Similarity=-0.002 Sum_probs=43.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-C---hhHHHHHH
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPNY---VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-K---MEHYACMV 393 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~---~~~~~~l~ 393 (499)
+...+...|++++|...|++..+.. +.+. ..+..+..++...|++++|...|+.+... .| + ...+..+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHH
Confidence 3444455555555555555555432 1111 24444445555555555555555555522 12 1 33444455
Q ss_pred HHHHhcCCHHHHHHHHHhCCC
Q 010837 394 DLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~ 414 (499)
.++...|++++|...|+++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00033 Score=62.85 Aligned_cols=178 Identities=11% Similarity=0.031 Sum_probs=129.6
Q ss_pred hHHHHHHHHhcCC---CChhHHHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc-HHHHHHHH
Q 010837 300 IDDARRVFDHMQQ---KNVFTWTSMIDGYGKNG--NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL-VDKGREIF 373 (499)
Q Consensus 300 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 373 (499)
+++++.+++.+.. .+..+|+.-...+.+.| .+++++.+++++.+.. +-|...|+.-.-++...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677778877764 47778888777777777 4899999999999874 4577777766666666777 68999999
Q ss_pred HHchHhcCCCC-ChhHHHHHHHHHHhc--------------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc-----
Q 010837 374 ESMERDYSMKP-KMEHYACMVDLLGRA--------------GSLEQALKFVLEMPE--KPNSDVWAALLSSCRLH----- 431 (499)
Q Consensus 374 ~~~~~~~~~~p-~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~----- 431 (499)
+.+.+. .| |...|+.....+.+. +.++++++.+.+... +.|...|+-+-..+.+.
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 999843 44 666676665555544 457889998888775 55777787555555444
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH---HhcCChHHHHHHHHHHHhC
Q 010837 432 ------DDVEMANIAANEIFKLNANDRPGAYVALSNTL---AAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 432 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~ 482 (499)
+.++++++.++++++..|+. ...+..++... ...|..+++...++++++.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45889999999999999976 44444443322 2467788899999998874
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.06 E-value=4e-06 Score=63.30 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=46.9
Q ss_pred cCcHHHHHHHHHHchHhcCC-CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHH
Q 010837 363 AGLVDKGREIFESMERDYSM-KP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
.|++++|+..|++..+ .+. .| +...+..+..+|...|++++|++.|+++.+ +.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555555666655551 110 13 344555566666666666666666665554 234555566666666666666666
Q ss_pred HHHHHHHhcCCCC
Q 010837 439 IAANEIFKLNAND 451 (499)
Q Consensus 439 ~~~~~~~~~~~~~ 451 (499)
..++++++..+..
T Consensus 82 ~~~~~al~~~p~~ 94 (117)
T 3k9i_A 82 ELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCc
Confidence 6666666655544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=73.45 Aligned_cols=150 Identities=9% Similarity=-0.037 Sum_probs=80.1
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 363 (499)
...+..+...+.+.|++++|...|++..+.+.... .+...|+.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34566788888999999999999998764222111 1222333333332221 13677778888888
Q ss_pred CcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH-HhhcCCHHHHHH
Q 010837 364 GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP-NSDVWAALLSS-CRLHDDVEMANI 439 (499)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~-~~~~~~~~~a~~ 439 (499)
|++++|...++...+. .| +...|..+..+|...|++++|+..|+++.. .| +...+..+... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888832 45 677888888889999999999999988876 34 34455555444 234566777888
Q ss_pred HHHHHHhcCCCC
Q 010837 440 AANEIFKLNAND 451 (499)
Q Consensus 440 ~~~~~~~~~~~~ 451 (499)
.|+.+.+..|..
T Consensus 321 ~~~~~l~~~p~~ 332 (338)
T 2if4_A 321 MYKGIFKGKDEG 332 (338)
T ss_dssp ------------
T ss_pred HHHHhhCCCCCC
Confidence 888888776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.05 E-value=8.6e-06 Score=65.57 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+...|..+..+|.+.|++++|+..++++.. +.+...|..+..++...|++++|...|+++++..|..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 345677778888888888888888887765 4467788888888888888888888888888887765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=63.18 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--------------------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE--------------------KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
+......+.+.|++++|+..|++... +.+...|..+..+|.+.|++++|+..++++++.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 44444455555555555555544432 1234678889999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
|.. ...|..++.+|...|++++|...+++..+..
T Consensus 94 p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Ccc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 987 8999999999999999999999999988753
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=6.2e-06 Score=62.22 Aligned_cols=84 Identities=18% Similarity=0.117 Sum_probs=71.2
Q ss_pred hcCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHH
Q 010837 398 RAGSLEQALKFVLEMPEK----P-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472 (499)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 472 (499)
..|++++|+..|++..+. | +...+..+..++...|++++|+..++++++..|.. +.++..++.+|.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHH
Confidence 468889999999988763 3 34678889999999999999999999999999988 89999999999999999999
Q ss_pred HHHHHHHHhC
Q 010837 473 TELREKMKLR 482 (499)
Q Consensus 473 ~~~~~~~~~~ 482 (499)
...+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.93 E-value=7.6e-05 Score=71.71 Aligned_cols=116 Identities=12% Similarity=0.072 Sum_probs=83.0
Q ss_pred HHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHH
Q 010837 291 VDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367 (499)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 367 (499)
...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3446677888888888887754 356778888888888888888888888888753 345677888888888888888
Q ss_pred HHHHHHHHchHhcCCCC-ChhHHHHHHHH--HHhcCCHHHHHHHHH
Q 010837 368 KGREIFESMERDYSMKP-KMEHYACMVDL--LGRAGSLEQALKFVL 410 (499)
Q Consensus 368 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~~~~~~a~~~~~ 410 (499)
+|.+.|+++.+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888743 33 34445555555 777888888888888
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.87 E-value=7.3e-05 Score=71.47 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=94.3
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCC--C-C---------------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-N---------------VFTWTSMIDGYGKNGNPNQALELFCMMQECC 345 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (499)
...+..+...|.+.|++++|...|+++.+ | + ...|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45677888999999999999999998864 3 2 4677778888888888888888888887753
Q ss_pred CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHH-HHHhCCC
Q 010837 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALK-FVLEMPE 414 (499)
Q Consensus 346 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~ 414 (499)
+.+...|..+..+|...|++++|...|+++. .+.| +...+..+..++.+.++.+++.+ .++.|..
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777778888888888888888888887 4455 55677777777777777776653 4555554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.85 E-value=8.3e-05 Score=68.76 Aligned_cols=117 Identities=8% Similarity=-0.042 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC----------------C---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQ----------------K---NVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (499)
..+..+...+.+.|++++|...|++..+ . +...|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4577788899999999999999988764 1 22344555555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 010837 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 346 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 405 (499)
+.+...+..+..+|...|++++|...|+++.+. .| +...+..+..++...++.+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 223444555555555555555555555555421 23 334444444444444444444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00011 Score=53.31 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+...+..+...+...|++++|+..|+++++.+|.. ..+|..++.+|.+.|++++|.+.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDY-VGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555554 4555555555555555555555555544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.82 E-value=4.7e-05 Score=72.75 Aligned_cols=124 Identities=8% Similarity=0.021 Sum_probs=85.0
Q ss_pred HHcccCcHHHHHHHHHHchHhcC--C---CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHH
Q 010837 359 ACGHAGLVDKGREIFESMERDYS--M---KP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE---------KPN-SDVWA 422 (499)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~--~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~-~~~~~ 422 (499)
.+..+|++++|+.++++..+... + .| ...+++.|..+|...|++++|..++++..+ .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566777777777766653211 1 12 245677788888888888888887776554 133 34677
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHh-----cCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFK-----LNAND--RPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
.|...|...|++++|+.+++++++ .|++. ...+...+..++...|++++|+.++.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887765 45543 1334556777788888888888888888764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.82 E-value=8.8e-05 Score=52.53 Aligned_cols=81 Identities=19% Similarity=0.264 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
...+..+...+...|++++|+..|++... +.+...+..+...+...|++++|...++++.+..|.. ...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 44566667777777777777777776654 3456677777777778888888888888887777765 66677777666
Q ss_pred HhcC
Q 010837 464 AAAG 467 (499)
Q Consensus 464 ~~~g 467 (499)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 5543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00064 Score=66.57 Aligned_cols=168 Identities=10% Similarity=0.017 Sum_probs=127.6
Q ss_pred ChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC-
Q 010837 299 KIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGN----------PNQALELFCMMQECCVQPNYVTFLGALSACGHAG- 364 (499)
Q Consensus 299 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~- 364 (499)
..++|.+.++++.+ .+..+|+.--.++...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567788877764 245567666666666666 888999999988763 446667777667777778
Q ss_pred -cHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcC-CHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc--------
Q 010837 365 -LVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAG-SLEQALKFVLEMPE--KPNSDVWAALLSSCRLH-------- 431 (499)
Q Consensus 365 -~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~-------- 431 (499)
+++++.+.++++.+. .| +...|+.-..++.+.| .++++++.++++.+ .-|...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999843 45 6677777777777788 88999999998887 35677887777666542
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHH
Q 010837 432 ------DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 432 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (499)
+.++++++.+++++...|.. ..+|..+...+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~-~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPND-QSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSC-SHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCC-ccHHHHHHHHHhcCCCccc
Confidence 56799999999999999998 8999999999988887554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00027 Score=54.84 Aligned_cols=89 Identities=12% Similarity=0.006 Sum_probs=44.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh--
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL----HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA-- 465 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 465 (499)
|...|...+.+++|+++|++..+..+...+..|...|.. .+|+++|.+.|++..+.+. +..+..|...|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQYAGK 107 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCC---HHHHHHHHHHHHCCC
Confidence 444444444444455555544444444445555544444 4555555555555554432 3455555555555
Q ss_pred --cCChHHHHHHHHHHHhCC
Q 010837 466 --AGKWDSVTELREKMKLRG 483 (499)
Q Consensus 466 --~g~~~~A~~~~~~~~~~~ 483 (499)
.+++++|.+.+++..+.|
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 455555555555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00013 Score=54.59 Aligned_cols=80 Identities=15% Similarity=0.039 Sum_probs=58.4
Q ss_pred HHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010837 368 KGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEI 444 (499)
Q Consensus 368 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (499)
.|...|++.. ...| +...+..+...|...|++++|+..|++... +.+...|..+..++...|++++|...|+++
T Consensus 3 ~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566677666 3344 566777788888888888888888877765 345667777888888888888888888887
Q ss_pred HhcCCC
Q 010837 445 FKLNAN 450 (499)
Q Consensus 445 ~~~~~~ 450 (499)
++..+.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 776543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.74 E-value=6.4e-05 Score=71.83 Aligned_cols=123 Identities=10% Similarity=-0.124 Sum_probs=74.8
Q ss_pred HHhCCChhHHHHHHHhccC-------C----ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhh
Q 010837 196 YVKGGKTSYARIVFDMMLE-------K----NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET 264 (499)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 264 (499)
+...|++++|+.++++..+ + ...+++.+...|..+|++++|..++++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~---------------------- 376 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR---------------------- 376 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------------------
Confidence 4567888888887776632 1 134677888888888888888887763
Q ss_pred HHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-------CC----hhHHHHHHHHHHhCCChhH
Q 010837 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-------KN----VFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~g~~~~ 333 (499)
++++++...-..-+-...+++.|...|...|++++|+.++++..+ ++ ..+.+.+..++...+.+++
T Consensus 377 ---aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 377 ---MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp ---HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 233333222222212234677788888888888888888776542 11 1233444455555555666
Q ss_pred HHHHHHHHHH
Q 010837 334 ALELFCMMQE 343 (499)
Q Consensus 334 a~~~~~~m~~ 343 (499)
|+.+|.++++
T Consensus 454 ae~~~~~~~~ 463 (490)
T 3n71_A 454 NEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.74 E-value=8e-05 Score=58.47 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHH----HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE--------KP-NSDVW----AALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (499)
.|..+..++.+.|++++|+..+++..+ .| +...| .....++...|++++|+..|+++++..|.. ..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d-~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER-KG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-CS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HH
Confidence 566666666667776666666555442 34 34577 888889999999999999999999887766 44
Q ss_pred hhH
Q 010837 455 AYV 457 (499)
Q Consensus 455 ~~~ 457 (499)
.+.
T Consensus 138 ~~~ 140 (159)
T 2hr2_A 138 ETP 140 (159)
T ss_dssp CCT
T ss_pred HHH
Confidence 433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00099 Score=51.60 Aligned_cols=112 Identities=9% Similarity=-0.061 Sum_probs=92.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 010837 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----AGSLEQ 404 (499)
Q Consensus 329 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~ 404 (499)
+++++|.+.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 44444 667777878888999999998832 355677788888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCC
Q 010837 405 ALKFVLEMPEKPNSDVWAALLSSCRL----HDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 449 (499)
|+++|++..+..+...+..|...|.. .+|.++|.+.+++..+.|.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998877788888889988888 8999999999999988764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.65 E-value=6.5e-05 Score=55.62 Aligned_cols=92 Identities=10% Similarity=-0.024 Sum_probs=61.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC-----CchhH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR-----PGAYV 457 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~ 457 (499)
+...+..+...+...|++++|++.|++... +.+...+..+..++...|++++|++.++++++..|... ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 345566677777777888888877777665 34567777777788888888888888888877766541 23455
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 010837 458 ALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~ 476 (499)
.+..++...|++++|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 5555666666555554433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.64 E-value=6e-05 Score=55.79 Aligned_cols=94 Identities=13% Similarity=0.003 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-------hh
Q 010837 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-------ME 387 (499)
Q Consensus 315 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------~~ 387 (499)
...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++.. .+.|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHHHH
Confidence 3455566666777777777777777766642 3355666666777777777777777777766 33453 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEM 412 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (499)
.+..+..++...|+.+.|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4444555555555555444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00018 Score=53.75 Aligned_cols=78 Identities=10% Similarity=-0.075 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
+|+..|++..+.. +.+...+..+..++...|++++|...|++..+. .| +...|..+..+|...|++++|...|++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4666677766642 345566677777777777777777777777632 33 455667777777777777777777776
Q ss_pred CCC
Q 010837 412 MPE 414 (499)
Q Consensus 412 ~~~ 414 (499)
...
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=6.3e-05 Score=58.94 Aligned_cols=85 Identities=12% Similarity=0.025 Sum_probs=63.2
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC----------HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 398 RAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD----------VEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 398 ~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
+.+.+++|++.+++..+ +.+...|..+..++...++ +++|+..|+++++.+|.. ..+|..++.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHH
Confidence 34455566666655554 3355556555555555544 569999999999999998 8999999999998
Q ss_pred cC-----------ChHHHHHHHHHHHhCC
Q 010837 466 AG-----------KWDSVTELREKMKLRG 483 (499)
Q Consensus 466 ~g-----------~~~~A~~~~~~~~~~~ 483 (499)
.| ++++|.+.|++..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999988743
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0015 Score=64.00 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=122.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHcccCc----------HHHHHHHHHHchHhcCCCC-ChhHHHHHHHH
Q 010837 328 NGNPNQALELFCMMQECCVQPN-YVTFLGALSACGHAGL----------VDKGREIFESMERDYSMKP-KMEHYACMVDL 395 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 395 (499)
....++|++.++++.+. .|+ ...|+.--.++...|+ ++++.+.++.+.+. .| +..+|..-.-+
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 34456789999999885 454 4456554444444555 89999999999943 45 67778777777
Q ss_pred HHhcC--CHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc----
Q 010837 396 LGRAG--SLEQALKFVLEMPE--KPNSDVWAALLSSCRLHD-DVEMANIAANEIFKLNANDRPGAYVALSNTLAAA---- 466 (499)
Q Consensus 396 ~~~~~--~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 466 (499)
+.+.+ +++++++.++++.+ .-+..+|+.-...+.+.| .++++++.++++++.+|.. ..+|+....++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-HHHHHHHHHHHHHHSCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHhhcccc
Confidence 88888 77999999999987 467889998888888888 8999999999999999998 89999988888774
Q ss_pred ----------CChHHHHHHHHHHHhCCCccCccccc
Q 010837 467 ----------GKWDSVTELREKMKLRGVLKDTGCSW 492 (499)
Q Consensus 467 ----------g~~~~A~~~~~~~~~~~~~~~~~~~~ 492 (499)
+.++++.+.+++.... .|+....|
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW 229 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAW 229 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHhh--CCCCccHH
Confidence 5678999999888774 45544444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00024 Score=55.67 Aligned_cols=49 Identities=6% Similarity=0.034 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHhhc-----------CCHHHHHHHHHHHHhcCCCC
Q 010837 403 EQALKFVLEMPE--KPNSDVWAALLSSCRLH-----------DDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 403 ~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 451 (499)
++|+..|++..+ +.+..+|..+..+|... |++++|++.|+++++.+|..
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 455555555554 23445555666666544 47888888888888888765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0012 Score=46.50 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+...+..+...+...|++++|+..++++++..+.. ..++..++.+|.+.|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34678888889999999999999999999998877 8899999999999999999999999988753
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0025 Score=45.23 Aligned_cols=69 Identities=7% Similarity=0.024 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 416 PNSDVWAALLSSCRLHDD---VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 416 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
.+...+..+..++...++ .++|..+++++++.+|.. +.....++..+.+.|++++|...|+++.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 344555555555543333 466666666666666666 666666666666666666666666666654433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00043 Score=49.88 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=47.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchh
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPE--KPNSD-VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (499)
....+.+.|++++|++.|+++.+ +.+.. .+..+..++...|++++|.+.|+++++.+|.. ...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS-PALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-THHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHH
Confidence 44566777888888888887765 33556 77778888888888888888888888887776 4444
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.17 Score=49.68 Aligned_cols=233 Identities=8% Similarity=-0.055 Sum_probs=120.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHhcChhh-
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIET- 264 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~- 264 (499)
-+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+- ......+..++..+.+.+..
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCC
Confidence 34455667778888888887766 33455555566777788888777766555543 22334455555555432111
Q ss_pred HHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC---------------------------CCChh-
Q 010837 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ---------------------------QKNVF- 316 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------------------------~~~~~- 316 (499)
.+....-++. ....|+...|..+...+. .++..
T Consensus 154 ~~~~~~R~~~-------------------al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~ 214 (618)
T 1qsa_A 154 PLAYLERIRL-------------------AMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFT 214 (618)
T ss_dssp HHHHHHHHHH-------------------HHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHH-------------------HHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhh
Confidence 1112222222 222233333333322221 11111
Q ss_pred --HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH----HHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHH
Q 010837 317 --TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT----FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390 (499)
Q Consensus 317 --~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 390 (499)
.+..-+.-+.+ .+.+.|...|....+.. ..+... ...+.......+...++...+...... ..+.....
T Consensus 215 ~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e 289 (618)
T 1qsa_A 215 RQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIE 289 (618)
T ss_dssp HHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHH
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHH
Confidence 11111222223 36778888887775543 223222 223333344445345555555554421 23333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 391 CMVDLLGRAGSLEQALKFVLEMPEKP--NSDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
-.+....+.|+++.|...|+.|...+ .....--+.+++...|+.++|..+|+.+.+
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34444456788888888888887632 334445566677778888888888888764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0017 Score=46.96 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
.+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444444331 1123334444444444444444444444433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00071 Score=63.50 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=42.0
Q ss_pred ccCcHHHHHHHHHHchHhc--CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHHHHH
Q 010837 362 HAGLVDKGREIFESMERDY--SMKP----KMEHYACMVDLLGRAGSLEQALKFVLEMPE---------KPN-SDVWAALL 425 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~-~~~~~~l~ 425 (499)
..|++++|+.++++..... -+.| ...+++.|..+|...|++++|+.++++... .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4455666666655544221 1111 133455555555555666555555554433 122 13455555
Q ss_pred HHHhhcCCHHHHHHHHHHHHh
Q 010837 426 SSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~ 446 (499)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 555555555555555555554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0012 Score=62.04 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=59.6
Q ss_pred HHHHcccCcHHHHHHHHHHchHhc--CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHH
Q 010837 357 LSACGHAGLVDKGREIFESMERDY--SMKP----KMEHYACMVDLLGRAGSLEQALKFVLEMPE---------KPN-SDV 420 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~-~~~ 420 (499)
+..+.+.|++++|..++++..... -+.| ...+++.|+.+|...|++++|+.+++++.. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445556778888888777766321 1122 244677777777778888887777776554 122 246
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
++.|...|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777788888777777777
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.047 Score=49.23 Aligned_cols=67 Identities=10% Similarity=-0.066 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+..+|..+...+...|++++|...++++.. .|+...|..+...+.-.|++++|.+.++++...+|.+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 556666666666666777777777776665 5666666666666777777777777777777776655
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.048 Score=56.21 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=71.6
Q ss_pred HHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHH
Q 010837 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
......|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 3456779999999988766 3567899999999999999999999998754 3344445555677766665
Q ss_pred HHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 372 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
+-+... ..|. ++.-..+|.+.|++++|++++.++.
T Consensus 729 ~~~~a~-~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 729 LAKDAE-TTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHH-HTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHH-HcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 555544 2121 3444455666777777777776655
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0024 Score=45.84 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=53.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc-hhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPG-AYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
....+...|++++|++.++++++..+.. .. .+..++.+|...|++++|.+.+++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4566788999999999999999999887 77 99999999999999999999999998754
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0059 Score=55.05 Aligned_cols=76 Identities=13% Similarity=0.024 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCcccccc
Q 010837 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493 (499)
Q Consensus 415 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 493 (499)
+.+..+|..+...+...|++++|...+++++..+ |+...|..++..+.-.|++++|.+.+++....+..+. .+.|+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHH
Confidence 5678888888888888899999999999999998 4456778889999999999999999999887654443 34443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0045 Score=58.09 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHh-----cCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFK-----LNAND--RPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
+++.|..+|...|++++|+.+++++++ .|+.. ...+++.|+..|..+|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 444444555555555555555444443 12211 1223444555555555555555444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.19 Score=39.93 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=87.7
Q ss_pred HHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHH
Q 010837 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
....+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456789999999888776 5677899999999999999999999988654 3444445556677776665
Q ss_pred HHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010837 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444 (499)
Q Consensus 372 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (499)
+-+....+ | -++.-...+.-.|+++++.++|.+...-|... ......|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 55544422 2 14555666777899999999998776522111 1122356677777776655
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.57 E-value=6.7e-05 Score=68.96 Aligned_cols=236 Identities=12% Similarity=0.079 Sum_probs=135.6
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccc
Q 010837 79 NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158 (499)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 158 (499)
.+.+|..|..+..+.+++.+|+..|-+ ..|+..|..+|.+..+.|++++-++.+...++..-.| ..=+.++-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ay-- 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFAL-- 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHH--
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHH--
Confidence 445677788888888888877765543 4566677788888888888888888887776653333 3334566666
Q ss_pred cccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccC------------------------
Q 010837 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE------------------------ 214 (499)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------ 214 (499)
++.++....+++.. .||..-...+.+-|...|.++.|.-+|..+..
T Consensus 127 ---Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 127 ---AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp ---HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred ---HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444433333221 36666666677777777888777777766521
Q ss_pred CChHhHHHHHHHHHhCCCHHHHHHHHHhcC-CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHH
Q 010837 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTV-EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293 (499)
Q Consensus 215 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (499)
.++.+|-.+-.+|...+++.-|.-.--.++ .+|.- ..++..| ...|.+++-+.+++.-... -.....+|+-|.-.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL--~elv~~Y-E~~G~f~ELIsLlEaglgl-ErAHmGmFTELaIL 272 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL--EELINYY-QDRGYFEELITMLEAALGL-ERAHMGMFTELAIL 272 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCC--SGGGSSS-STTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHH--HHHHHHH-HhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHH
Confidence 266789888889888888877754432222 22210 0111111 2225555555555444321 11234455555555
Q ss_pred HHhcCChHHHHHHHHhcCC-----------CChhHHHHHHHHHHhCCChhHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQ-----------KNVFTWTSMIDGYGKNGNPNQAL 335 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~ 335 (499)
|+|- +.++..+.++.... .....|..++-.|.+..++|.|.
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5544 33444433332221 24456666666676666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0061 Score=57.26 Aligned_cols=94 Identities=10% Similarity=0.005 Sum_probs=57.6
Q ss_pred HHHHHhCCChhHHHHHHHhccCC--------C---hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcC
Q 010837 193 VDSYVKGGKTSYARIVFDMMLEK--------N---VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261 (499)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~--------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 261 (499)
+.-+.+.|++++|+.++++..+. + ..+++.+...|...|++++|+.++++.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~------------------ 355 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT------------------ 355 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH------------------
Confidence 34455677888888777766431 1 346777777777788888877776633
Q ss_pred hhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC
Q 010837 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (499)
+.+++...-...+....+++.|...|...|++++|..++++..
T Consensus 356 -------L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 356 -------MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp -------HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2222222211111123466777777888888888887777654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.16 Score=40.24 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=70.5
Q ss_pred HHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHH
Q 010837 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 273 (499)
+.....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+..+-+...+...+ . |+.++...+-+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~---t---g~~e~L~kla~ 84 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLV---T---GDVNKLSKMQN 84 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHH---H---TCHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHH---h---CCHHHHHHHHH
Confidence 4467899999999998877 46789999999999999999999999987643332222222 1 44444443333
Q ss_pred HHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC
Q 010837 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312 (499)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 312 (499)
.....|- ++.....+.-.|+++++.++|.+..+
T Consensus 85 iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 85 IAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 3333332 34445556667788887777766544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.056 Score=55.68 Aligned_cols=46 Identities=15% Similarity=0.009 Sum_probs=22.3
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
...|++++|.++.+. -.+...|..+...+.+.++++.|++.|..+.
T Consensus 663 l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 334555555554322 1234455555555555555555555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.093 Score=39.07 Aligned_cols=140 Identities=11% Similarity=0.078 Sum_probs=90.1
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 405 (499)
.-.|..++..++..+.... .+..-|+-++.-....-+-+-..++++.+-.-+.+. .+|+....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3457777777777777653 344555555554445555666666666655333322 23333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
..-+-.+- .+.......+......|.-+.-.+++..+.... .+++.....+..+|.+.|+..+|.+++.+..+.|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33333332 244556666778888888888888888865533 333688888999999999999999999999888875
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.023 Score=40.09 Aligned_cols=67 Identities=7% Similarity=-0.076 Sum_probs=49.6
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 384 PKMEHYACMVDLLGRAGS---LEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 384 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
.+...+..+..++...++ .++|..++++... +.+......+...+.+.|++++|+..|+++.+..+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 356667777777654444 6788888887776 455677777778888888888888888888887766
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.027 Score=48.67 Aligned_cols=82 Identities=11% Similarity=0.160 Sum_probs=54.6
Q ss_pred HHHHHHHHHHchHhcCCCCC---hhHHHHHHHHHHhc-----CCHHHHHHHHHhCCC-CC--CHHHHHHHHHHHhhc-CC
Q 010837 366 VDKGREIFESMERDYSMKPK---MEHYACMVDLLGRA-----GSLEQALKFVLEMPE-KP--NSDVWAALLSSCRLH-DD 433 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~-~~--~~~~~~~l~~~~~~~-~~ 433 (499)
...|...+++.. .+.|+ ...|..|...|... |+.++|.+.|++... .| +..++......++.. |+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 455666666665 34554 45677777777763 777777777777766 44 356666666766663 77
Q ss_pred HHHHHHHHHHHHhcCCC
Q 010837 434 VEMANIAANEIFKLNAN 450 (499)
Q Consensus 434 ~~~a~~~~~~~~~~~~~ 450 (499)
.+++.+.+++.+...+.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77777777777777666
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.062 Score=49.89 Aligned_cols=199 Identities=11% Similarity=0.007 Sum_probs=112.8
Q ss_pred CCCCcccccccCCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC
Q 010837 29 FPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ 108 (499)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 108 (499)
.+..++.+- ...|+..|..++.++.+.|.+++-...+....+..-.| .+=+.|+-+|++.+++.+.++++..
T Consensus 70 v~eAIdsyI---kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~rL~elEefl~~--- 141 (624)
T 3lvg_A 70 VKEAIDSYI---KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFING--- 141 (624)
T ss_dssp CTTTTTSSC---CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSCSSSTTTSTTSC---
T ss_pred hHHHHHHHH---hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhCcHHHHHHHHcC---
Confidence 444444443 45677889999999999999999999998877664334 4445788899998887765544332
Q ss_pred CChHHHHHHHHHHHhCCChhhHHHHHHHHHHcC--------------------CCCChhhHHHHhhhcccccc-------
Q 010837 109 RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG--------------------ERPDGYTFSMILKASTCCRS------- 161 (499)
Q Consensus 109 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------------------~~p~~~~~~~ll~~~~~~~~------- 161 (499)
||+.--..+.+-|...|.++.|.-+|..+.... -.-+..||..+-.+|...+.
T Consensus 142 ~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 142 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHh
Confidence 222222333333333333333333332211100 01233344444444411110
Q ss_pred ------------------CCcCcchhHHHHHHHHHHcCC-CCchhHHHHHHHHHHhCCChhHHHHHHHhccCC-------
Q 010837 162 ------------------NVPLPRNLGRMVHAQILKCDV-KADDVLYTALVDSYVKGGKTSYARIVFDMMLEK------- 215 (499)
Q Consensus 162 ------------------~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 215 (499)
...|-+++...+++.-. |+ ......|+.|.-.|++- +.++..+-++....+
T Consensus 222 GLniIvhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvi 298 (624)
T 3lvg_A 222 GLHIVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVL 298 (624)
T ss_dssp HHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTH
T ss_pred cchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHH
Confidence 45555555555555433 22 24556788888777775 455555555544332
Q ss_pred ----ChHhHHHHHHHHHhCCCHHHHHH
Q 010837 216 ----NVICSTSMISGFMSQGFVEDAEE 238 (499)
Q Consensus 216 ----~~~~~~~l~~~~~~~g~~~~a~~ 238 (499)
....|..++-.|.+-.+++.|..
T Consensus 299 racE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 299 RAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 34578888888888888876644
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.012 Score=45.48 Aligned_cols=87 Identities=11% Similarity=-0.005 Sum_probs=66.7
Q ss_pred cCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCCC-C-C--CHHHHHHHHHHHhhcCCHH
Q 010837 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG---SLEQALKFVLEMPE-K-P--NSDVWAALLSSCRLHDDVE 435 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~-~--~~~~~~~l~~~~~~~~~~~ 435 (499)
...+..+.+.|.+.... + .++..+...+.-++++.+ +.++++.+|++..+ . | +...+-.|.-+|.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 34566777777777632 3 367777788888888888 66789998888776 2 4 3456667777889999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 010837 436 MANIAANEIFKLNAND 451 (499)
Q Consensus 436 ~a~~~~~~~~~~~~~~ 451 (499)
+|.+.++.+++..|..
T Consensus 89 ~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9999999999999876
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.037 Score=40.03 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 387 EHYACMVDLLGRAGSLEQALKFVLEMPE---------KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.-+..|...+.+.|+++.|..+|+.+.. .+....+..|..++.+.|+++.|...++++.+..|..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 3445566666666666666666655443 1234567777777777777777777777777777665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.039 Score=47.70 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=73.7
Q ss_pred cCChHHHHHHHHhcCCCCh--hHHHHHHHH-HHhC--CC------hhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHcc
Q 010837 297 CGKIDDARRVFDHMQQKNV--FTWTSMIDG-YGKN--GN------PNQALELFCMMQECCVQPN---YVTFLGALSACGH 362 (499)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~--~~~~~l~~~-~~~~--g~------~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~ 362 (499)
.++..+....+.++...++ ..|..++.+ +... |+ ...|...+++..+ +.|+ ...|..+...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444555555666654444 345555543 2332 32 4566677777776 4565 4567777777777
Q ss_pred c-----CcHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhc-CCHHHHHHHHHhCCC
Q 010837 363 A-----GLVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRA-GSLEQALKFVLEMPE 414 (499)
Q Consensus 363 ~-----~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 414 (499)
. |+.++|.+.|++.. .+.| +..++....+.+++. |+.+++.+.+++...
T Consensus 212 vPp~~gGd~ekA~~~ferAL---~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLT---RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHH---HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 3 88888888888888 3456 366777777878774 888888888888765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.044 Score=39.60 Aligned_cols=66 Identities=14% Similarity=0.050 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC------CCCCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNA------NDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
+..-+..+...+...|+++.|...++.+.+... .....++..++.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 445566788999999999999999999987421 123678999999999999999999999998763
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.062 Score=41.50 Aligned_cols=85 Identities=14% Similarity=0.046 Sum_probs=61.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC---cHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhcCCHHH
Q 010837 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAG---LVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRAGSLEQ 404 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~ 404 (499)
....+.+-|.+..+.|. ++..+...+..++++++ ++++++.+++...+. . .| +...+-.|.-+|.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 34566677777666653 67777777777788877 667899999988854 2 24 35556667777889999999
Q ss_pred HHHHHHhCCC-CCC
Q 010837 405 ALKFVLEMPE-KPN 417 (499)
Q Consensus 405 a~~~~~~~~~-~~~ 417 (499)
|++.++.+.+ +|+
T Consensus 90 A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCC
Confidence 9999988877 553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.063 Score=40.91 Aligned_cols=112 Identities=10% Similarity=0.006 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHcccCcH------HHHHHHHHHchHhcCCCCChh-HHHHHHHH------HHhcCCHHHHHHHHHhCC
Q 010837 347 QPNYVTFLGALSACGHAGLV------DKGREIFESMERDYSMKPKME-HYACMVDL------LGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 347 ~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~ 413 (499)
+-|..+|-..+....+.|+. ++..++|++... .++|+.. .|...|.. +...++.++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34666777777777777887 788888888774 4555321 12222211 123467777777777664
Q ss_pred C--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 010837 414 E--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461 (499)
Q Consensus 414 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 461 (499)
+ +.-...|.....--.+.|+.+.|.+++.+.+..++.| .......++
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 3 2235566666666677788888888888888877777 444444433
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=95.03 E-value=1.8 Score=38.44 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHH----HHHHHcCCCCChhhHHHHhhhc
Q 010837 81 NISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV----RKLVSSGERPDGYTFSMILKAS 156 (499)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~ 156 (499)
.+|..+..-|.+.+++++|++++-. -...+.+.|+...+.++- +.+.+.++++|.....-++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556677778888999999887643 334466677776655544 5566678899988887777776
Q ss_pred cccccCCcCcchhHHHHHHHHHHcC--CCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCC
Q 010837 157 TCCRSNVPLPRNLGRMVHAQILKCD--VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232 (499)
Q Consensus 157 ~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 232 (499)
...............+...+-.+.| -.-|+.....+...|.+.+++.+|..-|=.-..++...+..++.-+...+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 3332222222233334444445544 234667778888889999999999888743222233566555555555444
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=3 Score=40.90 Aligned_cols=378 Identities=10% Similarity=-0.011 Sum_probs=188.2
Q ss_pred HHHHHHHHh-CCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCC
Q 010837 66 KIHAHITKT-GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP 144 (499)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 144 (499)
++-.-+.+. |.+.....-+..+..+.+.+++......+.. ...+...-.....+....|+..+|....+.+-..| ..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~ 134 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KS 134 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CC
Confidence 344444443 2223335556677888889999999998887 44455555567777888899888888777776655 22
Q ss_pred ChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcc-----------
Q 010837 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML----------- 213 (499)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------- 213 (499)
....+..++..+ .+.|.-.+..++. -+......|+...|..+...+.
T Consensus 135 ~p~~c~~l~~~~---------------------~~~g~lt~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~ 192 (618)
T 1qsa_A 135 QPNACDKLFSVW---------------------RASGKQDPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAII 192 (618)
T ss_dssp CCTHHHHHHHHH---------------------HHTTCSCHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred CcHHHHHHHHHH---------------------HHCCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334445555544 2222111111111 1122233333333333333321
Q ss_pred ----------------CCCh---HhHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHH----HHhcChhhHHH
Q 010837 214 ----------------EKNV---ICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIE----GYSISIETARK 267 (499)
Q Consensus 214 ----------------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~----~~~~~~~~~~~ 267 (499)
.++. ..+..-+.-+.+ .+.+.|...+.... ..+......+-. ..... +...+
T Consensus 193 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~-~~~~~ 270 (618)
T 1qsa_A 193 SLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGN-DVTDE 270 (618)
T ss_dssp HHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCST-TCCHH
T ss_pred HHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHc-CCChH
Confidence 1111 111111222333 36677777776653 112222222211 22222 31225
Q ss_pred HHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
+...+....... .+.....-.+....+.|+++.|...|+.|... .....--+..++...|+.++|..+|..+...
T Consensus 271 ~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 271 QAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp HHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 555555543322 22222333444455678888888888888653 2223334556677788888888888887642
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC---h---hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 010837 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK---M---EHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 418 (499)
.+ |-.++.+ .+.|..-. .. .....+. . ..-..-+..+...|....|...+..+....+.
T Consensus 349 ---~~---fYg~lAa-~~Lg~~~~-------~~-~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~ 413 (618)
T 1qsa_A 349 ---RG---FYPMVAA-QRIGEEYE-------LK-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSK 413 (618)
T ss_dssp ---CS---HHHHHHH-HHTTCCCC-------CC-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH
T ss_pred ---CC---hHHHHHH-HHcCCCCC-------CC-CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCH
Confidence 22 2222211 12221000 00 0000110 0 01112344567788888888888777655555
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC---CCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNA---NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
.....+.......|..+.++.........+. .. +..|...+..+.+.-.++..+-.---..+.+..|.
T Consensus 414 ~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~-P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 414 TEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERF-PLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHS-CCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhC-CcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 5455555556677888777655443222110 11 23466666666665555554433223345555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.073 Score=40.59 Aligned_cols=53 Identities=11% Similarity=-0.011 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
+|.++|.++|+.+++.+... ...|...++.-.+.|+.+.|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555555543333 444555555555555555555555555544433
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=94.50 E-value=2.4 Score=37.57 Aligned_cols=178 Identities=12% Similarity=0.079 Sum_probs=105.7
Q ss_pred HHHcCCCh---hHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcC
Q 010837 89 LHLKCGAL---KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165 (499)
Q Consensus 89 ~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 165 (499)
.-...|++ =+|.+. |.++..-|.+.+++++|++++-.--.. +++.= ...-
T Consensus 21 ~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~GA~~-----------ll~~~-----Q~~s 73 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILASVSQT-----------LLRSG-----QGGS 73 (336)
T ss_dssp HHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHTT-----CHHH
T ss_pred HHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHHHHHH-----------HHHCC-----Ccch
Confidence 34456777 667664 455777799999999999987653211 11110 1111
Q ss_pred cchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChh-HHHHHHHhc----------cCCChHhHHHHHHHHHhCCCHH
Q 010837 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS-YARIVFDMM----------LEKNVICSTSMISGFMSQGFVE 234 (499)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~ 234 (499)
-.+.+..+.+...+.++++|......|+..+.....-+ .=.++.+++ ..-+......+...|.+.+++.
T Consensus 74 g~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 74 GGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 13455566677778889999888888888877665422 112222222 1226677788889999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHh
Q 010837 235 DAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309 (499)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 309 (499)
+|..-|-...++....|..++..+....+.. .++...-.++ --|...+++..|..+|+.
T Consensus 154 ~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~---------------e~dlfiaRaV-L~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 154 AAEKHLVLGTKESPEVLARMEYEWYKQDESH---------------TAPLYCARAV-LPYLLVANVRAANTAYRI 212 (336)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG---------------GHHHHHHHHH-HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhcCCc---------------cHHHHHHHHH-HHHHHhCCHHHHHHHHHH
Confidence 9998884322333356655555554432211 1122222222 236667777777776554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.07 E-value=2.9 Score=36.79 Aligned_cols=165 Identities=11% Similarity=0.032 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHHhCCCC-ChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHH----HH
Q 010837 61 PFYGLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL----VR 135 (499)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~ 135 (499)
.+..+.-++.-++.|--- -...|..+..-|.+.+++++|++++.. -...+.+.|+...|-++ ++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 344444444444444111 224566677778888889888887654 33446667887666554 55
Q ss_pred HHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCC--CCchhHHHHHHHHHHhCCChhHHHHHHHhcc
Q 010837 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV--KADDVLYTALVDSYVKGGKTSYARIVFDMML 213 (499)
Q Consensus 136 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (499)
.+.+.+++++......++..+...................+..+.|- .-++.....+...|.+.|++.+|..-|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 56667889998888877776633222222233444445555555542 2467788888999999999999988776333
Q ss_pred CCChHhHHHHHHHHHhC---CCHHHH
Q 010837 214 EKNVICSTSMISGFMSQ---GFVEDA 236 (499)
Q Consensus 214 ~~~~~~~~~l~~~~~~~---g~~~~a 236 (499)
..+...+..++.-+... |...++
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~ 187 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTV 187 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchH
Confidence 23455666655555444 554443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.18 Score=50.42 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=47.0
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
.+-|...|+++.|+++.+++...-|.. ..+|..|+.+|...|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344667889999999999999988887 8899999999999999999998888874
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.54 E-value=0.18 Score=37.40 Aligned_cols=92 Identities=12% Similarity=-0.034 Sum_probs=63.8
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHhh
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ---ALKFVLEMPEK--P--NSDVWAALLSSCRL 430 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~--~--~~~~~~~l~~~~~~ 430 (499)
..-.....+..+.+.|.+.... |. ++..+--.+..++.+...... ++.++++.... | .....-.|.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3333444566667777666533 32 666666677778888776665 88888887763 3 23455566678889
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 010837 431 HDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.|++++|.+.++.+++..|.+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHHhCCCC
Confidence 999999999999999888876
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.08 E-value=2.1 Score=32.04 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=99.8
Q ss_pred HHHHHH--HHhcCChHHHHHHHHhcCCC-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC
Q 010837 288 SALVDM--YAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364 (499)
Q Consensus 288 ~~l~~~--~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 364 (499)
..||++ ..-.|.+++..++..+...+ +..-||-+|.-....-+-+-..++++..-+. .| ....|
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~ 75 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQ 75 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhh
Confidence 344444 45568899999988887653 5556666666555555555555555554331 11 13445
Q ss_pred cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010837 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM-PE-KPNSDVWAALLSSCRLHDDVEMANIAAN 442 (499)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (499)
++.....-+-.+- .+......-+..+..+|+-|+-.+++..+ .. +|++.....+..+|.+.|+..+|.+++.
T Consensus 76 NlKrVi~C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 76 NLKSVVECGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CTHHHHHHHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 6666666554432 23345566778888999999999999994 43 6889999999999999999999999999
Q ss_pred HHHhcCCC
Q 010837 443 EIFKLNAN 450 (499)
Q Consensus 443 ~~~~~~~~ 450 (499)
++-+.|..
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99988864
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.07 E-value=1.1 Score=33.80 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=43.7
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhCCC-CC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 383 KPKMEHYACMVDLLGRAGSLE---QALKFVLEMPE-KP--NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 383 ~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.|+..+--.+.-++.+....+ +++.+++++.. .| .....-.|.-++.+.|++++|.+..+.+++..|.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 455555555666666665443 56666666553 23 23344455667778888888888888888777766
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.02 E-value=4.4 Score=35.63 Aligned_cols=182 Identities=18% Similarity=0.148 Sum_probs=105.9
Q ss_pred HHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCc
Q 010837 87 LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166 (499)
Q Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 166 (499)
+..-...|++=+|.+. |.++..-|.+++++++|++++..-... +++.= ...--
T Consensus 20 l~~~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~ga~~-----------ll~~~-----Q~~sa 72 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQGALS-----------FLKAK-----QGGSG 72 (312)
T ss_dssp HHHHHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHTT-----CHHHH
T ss_pred HHHHhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHHHHH-----------HHHCC-----CcchH
Confidence 3344556777777764 456788899999999999998653221 11100 11111
Q ss_pred chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChh-HHHHHHHhc-------cC---CChHhHHHHHHHHHhCCCHHH
Q 010837 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS-YARIVFDMM-------LE---KNVICSTSMISGFMSQGFVED 235 (499)
Q Consensus 167 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~-------~~---~~~~~~~~l~~~~~~~g~~~~ 235 (499)
.+.+..+.+...+.+++++......++..+.....-+ .-.++++++ .. .+......+...|.+.|++.+
T Consensus 73 ~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~ 152 (312)
T 2wpv_A 73 TDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYE 152 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHH
Confidence 2445556677777888888888888888776643221 112233333 11 267788889999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHhcCh--hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhc
Q 010837 236 AEEIFRKTVEKDIVVYNAMIEGYSISI--ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310 (499)
Q Consensus 236 a~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 310 (499)
|...|-.....+...+..++..+.... +...++ +...-.+ +--|.-.|+...|..+|+..
T Consensus 153 A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~Ra-VL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 153 AERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRL-VFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHH-HHHHHHTTBHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHH-HHHHHHhcCHHHHHHHHHHH
Confidence 998876332223445555554443221 111111 1111122 22355677888887777643
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.45 E-value=1.6 Score=30.39 Aligned_cols=90 Identities=13% Similarity=0.037 Sum_probs=68.4
Q ss_pred CCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHH
Q 010837 57 NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (499)
-...-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 34567899999999988874 44444445566788999999999999999999999987765 567888888887878
Q ss_pred HHHcCCCCChhhHHH
Q 010837 137 LVSSGERPDGYTFSM 151 (499)
Q Consensus 137 m~~~g~~p~~~~~~~ 151 (499)
+..+| .|....|..
T Consensus 94 la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 94 LGGSS-DPALADFAA 107 (115)
T ss_dssp HHTCS-SHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 87776 555555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.44 E-value=1.1 Score=33.27 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=61.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHH---HHHHHHHchHhcCCCC--ChhHHHHHHHHH
Q 010837 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK---GREIFESMERDYSMKP--KMEHYACMVDLL 396 (499)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~ 396 (499)
+...........+.+-|.+....|. ++..+--.+..++.++++... ++.+++.+.+. + .| .....-.|.-++
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHH
Confidence 3333444455666667776666553 666666666677777776555 88888887732 2 24 344455667778
Q ss_pred HhcCCHHHHHHHHHhCCC-CCC
Q 010837 397 GRAGSLEQALKFVLEMPE-KPN 417 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~-~~~ 417 (499)
.+.|++++|.+.++.+.+ .|+
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhhHHHHHHHHHHHHHhCCC
Confidence 899999999998888776 453
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.4 Score=44.24 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh-----cCCCC
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFK-----LNAND 451 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~ 451 (499)
....++..+...|++++|+..+..+.. +-+...|..++.++.+.|+..+|++.|+++.+ .|.+|
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345566666677777777776666554 34566777777777777777777777766543 56666
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.99 Score=35.20 Aligned_cols=113 Identities=9% Similarity=0.023 Sum_probs=59.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC-----CCh-------hHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCH-HHHH
Q 010837 289 ALVDMYAKCGKIDDARRVFDHMQQ-----KNV-------FTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNY-VTFL 354 (499)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-~~~~ 354 (499)
.-++.+...|.++.|+-+.+.+.. +++ .++..+.+++...|++..|...|++..+.. .-+.. .+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 346666777777777766665431 221 244556677777777777777777753321 11111 1111
Q ss_pred HHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 010837 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415 (499)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (499)
.+- ....... ......+..+--.+..+|.+.+++++|+.+++.+..+
T Consensus 105 ~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 105 STG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 000 0000000 0112234455556778888888888888888888763
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=91.79 E-value=1.7 Score=30.26 Aligned_cols=90 Identities=17% Similarity=0.057 Sum_probs=66.9
Q ss_pred CCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHH
Q 010837 57 NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (499)
-...-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|-.+++..-+.+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 44567899999999988874 444444455667889999999999999999999999887654 56777777777777
Q ss_pred HHHcCCCCChhhHHH
Q 010837 137 LVSSGERPDGYTFSM 151 (499)
Q Consensus 137 m~~~g~~p~~~~~~~ 151 (499)
+..+| .|....|..
T Consensus 95 la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 95 LARSQ-DPRIQTFVN 108 (116)
T ss_dssp HTTCC-CHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 77665 455545443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.67 E-value=7.9 Score=35.43 Aligned_cols=89 Identities=9% Similarity=-0.069 Sum_probs=48.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC----CC-----hhHHHHHHHHHHhCCChhHHHHHHHHHHHc--CCCCCHHHHHH--
Q 010837 289 ALVDMYAKCGKIDDARRVFDHMQQ----KN-----VFTWTSMIDGYGKNGNPNQALELFCMMQEC--CVQPNYVTFLG-- 355 (499)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~~----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~-- 355 (499)
.++..|...|++.+|..++.++.+ .| ...+..-+..|...+++.++...+...... .+.+++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466677777777777666666543 11 223445556666777777777777665432 12233322211
Q ss_pred --HHHHHc-ccCcHHHHHHHHHHch
Q 010837 356 --ALSACG-HAGLVDKGREIFESME 377 (499)
Q Consensus 356 --ll~~~~-~~~~~~~a~~~~~~~~ 377 (499)
-...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 122344 5677777766665554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.48 E-value=0.66 Score=34.60 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=33.8
Q ss_pred CChhHHHHHHHHHHhcCCH---HHHHHHHHhCCC-CC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 384 PKMEHYACMVDLLGRAGSL---EQALKFVLEMPE-KP--NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 384 p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
|+..+--.+.-++.+.... .+++.+++++.. .| ....+-.|.-++.+.|++++|.+..+.+++..|.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3434444444444444433 345555544443 22 23344445555666666666666666666665554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.99 E-value=6.6 Score=42.02 Aligned_cols=159 Identities=9% Similarity=-0.014 Sum_probs=97.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHhcChhhHH
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK---DIVVYNAMIEGYSISIETAR 266 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~ 266 (499)
..++..+...+..+.+.++...... +......+..++...|++++|.+.|++.... +.... ....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~-----------~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-----------SSHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-----------hhhc
Confidence 3466667778888888776665544 4445567788899999999999999887521 11000 0000
Q ss_pred HHHHHHHHHHHccc--CCCchhHHHHHHHHHhcCChHHHHHHHHhcCC----CC----hhHHHHHHHHHHhCCChhHHHH
Q 010837 267 KALEVHCQLIKNVF--FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KN----VFTWTSMIDGYGKNGNPNQALE 336 (499)
Q Consensus 267 ~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~----~~~~~~l~~~~~~~g~~~~a~~ 336 (499)
. +..+..... ..-..-|..++..+.+.|.++.+.++-....+ .+ ...|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 011111111 11223566777778888888877766554331 22 1257888888889999999988
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHcccCcH
Q 010837 337 LFCMMQECCVQPNYVTFLGALSACGHAGLV 366 (499)
Q Consensus 337 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 366 (499)
.+..+.....+ ...+..|+..+|..|..
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCCh
Confidence 88877664333 44556666666655543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.75 E-value=1.3 Score=34.47 Aligned_cols=28 Identities=4% Similarity=-0.016 Sum_probs=22.1
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
..-..+..+|.+.|++++|+.+++.+..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3455688889999999999999887543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.47 E-value=10 Score=35.50 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHcccCcHHHHHHHHHHchHhc---CCCCC--hhH
Q 010837 319 TSMIDGYGKNGNPNQALELFCMMQEC--CVQPN---YVTFLGALSACGHAGLVDKGREIFESMERDY---SMKPK--MEH 388 (499)
Q Consensus 319 ~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~ 388 (499)
..|...+...|++.+|.+++.++... |.... ...+..-+..|...+++.+|..++.++..+. ...|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666665432 11111 1234444555666666666666666553211 11111 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
|...+..+...+++.+|.+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555555666666655554433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.28 E-value=2.7 Score=42.12 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=35.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHc
Q 010837 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376 (499)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 376 (499)
..+...|+++.|+++-++.... .+-+-.+|..|..+|...|+++.|.-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455677777777777777664 2334557777777777777777777766665
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.87 E-value=4.4 Score=38.01 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHcc-----cCCCchhHHHHHHHHHhcCChHHHHHHHHhcC
Q 010837 263 ETARKALEVHCQLIKNV-----FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (499)
++.++|.+.+..+.+.. ..........++..|...|+++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 66777777766665532 22334456667778888888877766655443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.84 E-value=1.7 Score=30.44 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
+.-++.+-++.+....+.|++......+.+|-+.+++..|.++++-++.+.|-. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 344566677777777788888888888999999999999999988888665543 445666664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.51 E-value=5.3 Score=42.73 Aligned_cols=191 Identities=9% Similarity=0.044 Sum_probs=114.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--------------------
Q 010837 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ-------------------- 347 (499)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-------------------- 347 (499)
..++..+.+.+..+.+.++..-. ..+....-.+..++...|++++|.+.|++... |+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccc
Confidence 34566677778877777655444 34454455667788889999999999876421 110
Q ss_pred ---CCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-C--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHH
Q 010837 348 ---PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-K--MEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDV 420 (499)
Q Consensus 348 ---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~ 420 (499)
.-..-|..++..+.+.|.++.+.++-+...+..+-.+ + ...|..+.+.+...|++++|...+-.+.. .--...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 0112356677778888888888887777664322222 1 23678888888999999998888766544 223456
Q ss_pred HHHHHHHHhhcCCH------------HHHHHHHHHH-Hhc-CCCCCCchhHHHHHHHHhcCChHHHHH-HHHHHH
Q 010837 421 WAALLSSCRLHDDV------------EMANIAANEI-FKL-NANDRPGAYVALSNTLAAAGKWDSVTE-LREKMK 480 (499)
Q Consensus 421 ~~~l~~~~~~~~~~------------~~a~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 480 (499)
+..|+...+..|.. ++..+++..- ... .+...+..|..|=..+...|++..|-. +|+...
T Consensus 974 Lr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 66666666655544 3444444322 222 233323344444455567777766544 444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.24 E-value=2.7 Score=38.66 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=49.2
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
....++.++...|+.+++...+..+... .| +...|..+|.+|.+.|+..+|++.|++...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455667778899999999998888733 45 777899999999999999999999987654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.94 E-value=14 Score=33.86 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=10.4
Q ss_pred HHHHHHhcCChHHHHHHHHhc
Q 010837 290 LVDMYAKCGKIDDARRVFDHM 310 (499)
Q Consensus 290 l~~~~~~~g~~~~a~~~~~~~ 310 (499)
|...|.+.|+.++...++...
T Consensus 25 l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 25 QGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 444455555555555554443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.66 E-value=28 Score=35.90 Aligned_cols=247 Identities=11% Similarity=0.023 Sum_probs=132.6
Q ss_pred HHHHhCCChhHHHHHHHhccCC----Ch--HhHHHHHHHHHhCCCHHHHHHHHHhcC-CCC--------h-h-hHHHHHH
Q 010837 194 DSYVKGGKTSYARIVFDMMLEK----NV--ICSTSMISGFMSQGFVEDAEEIFRKTV-EKD--------I-V-VYNAMIE 256 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~--------~-~-~~~~ll~ 256 (499)
-+....|+.++++.+++..... +. ..-..+.-+....|..+++..++.... .++ . . .-.++--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3466788888999988887652 22 233445556777777777877776654 222 1 1 1111111
Q ss_pred HHhcChhhHHHHHHHHHHHHHcccCCCchhHH--HHHHHHHhcCChHHHHHHHHhcCC-CChhH--HHHHHHHHHhCCCh
Q 010837 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGS--ALVDMYAKCGKIDDARRVFDHMQQ-KNVFT--WTSMIDGYGKNGNP 331 (499)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~--~~~l~~~~~~~g~~ 331 (499)
+++..+..-+++.+.+..+....-. ...... +|...+.-.|+-+....++..+.+ .+... ...+.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 1221211223555555555543211 111112 233334556777777777766543 22222 33344455578999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHH---HHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010837 332 NQALELFCMMQECCVQPNYVTFL---GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408 (499)
Q Consensus 332 ~~a~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 408 (499)
+.+..+++.+... ..|. .-|. .+.-+|+..|+.....+++..+..+ ...++.-...+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 9999998888763 1222 2232 3445788899988888899888742 223343333444445556776667777
Q ss_pred HHhCCCCCCHHH--HHHHHHHHhhcCCH-HHHHHHHHHHH
Q 010837 409 VLEMPEKPNSDV--WAALLSSCRLHDDV-EMANIAANEIF 445 (499)
Q Consensus 409 ~~~~~~~~~~~~--~~~l~~~~~~~~~~-~~a~~~~~~~~ 445 (499)
++.+.+..|..+ -..+.-+....|+. .++..++..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 765555334333 22333333333332 56677777765
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.72 E-value=9.3 Score=30.87 Aligned_cols=50 Identities=8% Similarity=-0.140 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 402 LEQALKFVLEMPE----KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 402 ~~~a~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..++.++|..|.. .--+..|......+...|++++|.++|+..++.+-+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444444444433 2334445555555555555555555555555555444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.56 E-value=2.3 Score=29.84 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=43.8
Q ss_pred hhCCC-ChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHH
Q 010837 55 YINSD-TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIA 119 (499)
Q Consensus 55 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~ 119 (499)
+.+.. +.-+.++-++.+....+-|++.+..+.+++|.|.+++..|.++|+.++. .....|..++.
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33444 5556667777777777788888888888888888888888888877652 22334555543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.37 E-value=2.2 Score=31.71 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=42.6
Q ss_pred hhhCCC-ChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHH
Q 010837 54 HYINSD-TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMI 118 (499)
Q Consensus 54 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li 118 (499)
.+.+.. +.-+..+-++.+...++-|++.+..+.++++.+.+++..|.++|+.++. +.-..|..++
T Consensus 61 ~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 61 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 334444 5556666666666677778888888888888888888888887776652 2333455444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.80 E-value=7.9 Score=28.82 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
.-+..+-++.+....+.|++......+.+|-+.+++..|.++|+-++.+.|-. ..+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~--~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc--hhhHHHHHH
Confidence 33566677777777889999999999999999999999999999988665543 456776665
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.72 E-value=9.2 Score=32.58 Aligned_cols=117 Identities=18% Similarity=0.107 Sum_probs=61.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChh----HHHHHHHHHHhc
Q 010837 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME----HYACMVDLLGRA 399 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 399 (499)
...+.|.++++++....-++.. +-|...-..+++.+|-.|++++|.+-++... .+.|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a---~l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCchhhHHHHHHHHHHHH----
Confidence 3456677777777776666642 4455555666777777777777777777666 2344322 33333332
Q ss_pred CCHHHHHHHHHhCCCC-----CCHHHHHHHHHHH--hhcCCHHHHHHHHHHHHhcCCCC
Q 010837 400 GSLEQALKFVLEMPEK-----PNSDVWAALLSSC--RLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 400 ~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+...+-+-.-... ....-...++.+. ...|+.++|.++-.++.+.-+..
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1122111111111 1222333444443 34577777777777776654433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=80.80 E-value=55 Score=33.77 Aligned_cols=259 Identities=11% Similarity=0.096 Sum_probs=132.2
Q ss_pred HHcCCChhHHHHHhccCCC----CChH--HHHHHHHHHHhCCChhhHHHHHHHHHHcCC--CCC----hhhHHHHhhhcc
Q 010837 90 HLKCGALKYAGQMFDELPQ----RTLS--AYNYMIAGYLKNGQVEESLSLVRKLVSSGE--RPD----GYTFSMILKAST 157 (499)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~~ll~~~~ 157 (499)
....|+.++++.+++.... .+.. .=..+.-+.+..|..+++++++.......- .-+ .......+ ++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL-GL- 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL-GI- 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH-HH-
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH-HH-
Confidence 5567888999999988764 1222 223344456667776778888877665321 011 11111111 11
Q ss_pred cccc--CCcCcchhHHHHHHHHHHcCCCCchhHHH--HHHHHHHhCCChhHHHHHHHhccCC-C--hHhHHHHHHHHHhC
Q 010837 158 CCRS--NVPLPRNLGRMVHAQILKCDVKADDVLYT--ALVDSYVKGGKTSYARIVFDMMLEK-N--VICSTSMISGFMSQ 230 (499)
Q Consensus 158 ~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~l~~~~~~~ 230 (499)
|- ...++ +.+...+..+....- +...... +|...+.-.|+-+....++..+.+. + +.-...+.-++...
T Consensus 462 --Gla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 --GLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp --HHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred --HHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 10 22222 333444444433221 1111122 3344455677777767777665332 2 22233444556678
Q ss_pred CCHHHHHHHHHhcC-CCCh-hhHHH-HHH--HHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHH
Q 010837 231 GFVEDAEEIFRKTV-EKDI-VVYNA-MIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305 (499)
Q Consensus 231 g~~~~a~~~~~~~~-~~~~-~~~~~-ll~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 305 (499)
|+.+.+..+.+.+. ..+. .-|.. +.- +|+.. |+.....++++.+.+.. ..++.....+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGT-Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGT-GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888877765 2332 22332 222 23333 66655566887777642 2233333333334555677777888
Q ss_pred HHHhcCC-CChhHHHH--HHHHHHhCCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 306 VFDHMQQ-KNVFTWTS--MIDGYGKNGNP-NQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 306 ~~~~~~~-~~~~~~~~--l~~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
+++.+.+ .|..+-.. +..+....|+. .++.+++..+.. .+|..+-...+.+
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIA 670 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHH
Confidence 8876653 34443332 33334444443 578888888864 4455543333333
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=80.35 E-value=18 Score=27.78 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=43.7
Q ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 405 ALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR-PGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 405 a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
+.+.|..... +.|..-...-+.-.-...+ +.++|..|...++... +..|...+..+...|++.+|.++++.-++.
T Consensus 54 c~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 54 LMKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3444433333 4455444444333322233 5666776666554432 344666666777777777777777776666
Q ss_pred CCccC
Q 010837 483 GVLKD 487 (499)
Q Consensus 483 ~~~~~ 487 (499)
+-.|-
T Consensus 131 ~A~P~ 135 (152)
T 4a1g_A 131 QAEPR 135 (152)
T ss_dssp TCBSH
T ss_pred CCccH
Confidence 65553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.18 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.0 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.62 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.6 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.54 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.41 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.28 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.22 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.16 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.12 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.12 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.08 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.08 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.0 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.98 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.93 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.87 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.84 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.79 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.68 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.62 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.53 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.52 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.51 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.51 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.34 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.12 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.08 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.93 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.88 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.86 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.6 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.91 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.96 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.04 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.58 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.31 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.4e-20 Score=175.36 Aligned_cols=373 Identities=13% Similarity=0.087 Sum_probs=266.7
Q ss_pred HHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCCh
Q 010837 51 ALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQV 127 (499)
Q Consensus 51 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 127 (499)
+...+.+.|++++|.+.++++.+.. +-+...+..+..+|.+.|++++|...|++..+ .+..+|..+...+.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 4455667899999999999998875 45678888889999999999999999988753 4567888999999999999
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHH
Q 010837 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207 (499)
Q Consensus 128 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 207 (499)
++|++.++...+.... +........... .................... .................+....+..
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAAL-----VAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHH-----HHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred cccccccccccccccc-cccccccccccc-----cccccccccccccccccccc-cccccccccccccccccchhhhhHH
Confidence 9999999998876422 222222222222 22222333333333332222 2233333334444455555555555
Q ss_pred HHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCc
Q 010837 208 VFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284 (499)
Q Consensus 208 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 284 (499)
.+..... .+...+..+...+...|++++|...+ ....+..+ -+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~--------------------------------~~al~~~p-~~~ 203 (388)
T d1w3ba_ 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF--------------------------------EKAVTLDP-NFL 203 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH--------------------------------HHHHHHCT-TCH
T ss_pred HHHHhhccCcchhHHHHhhcccccccCcHHHHHHHH--------------------------------HHHHHhCc-ccH
Confidence 5444422 13344444455555555555554444 44443321 234
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 361 (499)
..+..+...+...|++++|...+++..+ .+...+..+...+.+.|++++|...|++..+.. +-+..++..+..++.
T Consensus 204 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4667778888889999999998887664 466678888889999999999999999988753 345678888899999
Q ss_pred ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANI 439 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 439 (499)
..|++++|.+.++..... .+.+...+..+...+...|++++|++.|++..+ +.+..++..+..++...|++++|++
T Consensus 283 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999988743 234677888899999999999999999998876 3457788899999999999999999
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 440 AANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
.|+++++..|.. +.+|..++.+|.+.||
T Consensus 361 ~~~~al~l~P~~-~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 361 HYKEAIRISPTF-ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTCTTC-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Confidence 999999998887 8899999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=5.6e-20 Score=171.21 Aligned_cols=348 Identities=10% Similarity=0.063 Sum_probs=249.5
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYM 117 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 117 (499)
.|.+...+..+...+...|++++|...+++.++.. +-+..++..+..+|.+.|++++|...++...+ .+...+...
T Consensus 29 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 107 (388)
T d1w3ba_ 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccccccccccccccccccc
Confidence 45677888899999999999999999999999886 55778999999999999999999999988763 345555566
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (499)
.......+....+....................... .. ........+........... +.+...+..+...+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 180 (388)
T d1w3ba_ 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN-LL-----KALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFN 180 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH-HH-----HTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccc-cc-----cccchhhhhHHHHHHhhccC-cchhHHHHhhccccc
Confidence 666666777777777777766654444433333333 33 55556666666666665543 445678888899999
Q ss_pred hCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHH
Q 010837 198 KGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQ 274 (499)
Q Consensus 198 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 274 (499)
..|++++|...+++..+ .+..+|..+...+...|++++|...+++....+
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------- 233 (388)
T d1w3ba_ 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--------------------------- 233 (388)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---------------------------
T ss_pred ccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh---------------------------
Confidence 99999999999988754 356788888899999999999988887653110
Q ss_pred HHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 010837 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351 (499)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 351 (499)
..+...+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|.+.++..... .+.+..
T Consensus 234 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~ 306 (388)
T d1w3ba_ 234 ------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHAD 306 (388)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHH
T ss_pred ------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccch
Confidence 11233344455666677777777777766543 24566777777777777777777777776665 355666
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP-NSDVWAALLSSC 428 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~ 428 (499)
.+..+...+...|++++|...|++.. .+.| +..++..+..+|.+.|++++|++.|+++.+ .| +..+|..+..++
T Consensus 307 ~~~~l~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 307 SLNNLANIKREQGNIEEAVRLYRKAL---EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHT---TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 67777777777777777777777776 3345 456677777777777788888777777655 33 456777777777
Q ss_pred hhcCC
Q 010837 429 RLHDD 433 (499)
Q Consensus 429 ~~~~~ 433 (499)
.+.||
T Consensus 384 ~~~~D 388 (388)
T d1w3ba_ 384 KEMQD 388 (388)
T ss_dssp HHTCC
T ss_pred HHcCC
Confidence 66654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.9e-13 Score=123.17 Aligned_cols=193 Identities=13% Similarity=0.028 Sum_probs=105.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH------------
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY------------ 350 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~------------ 350 (499)
.|..+..+|...|++++|...|++..+ .+...|..+...|...|++++|.+.+++..... |+.
T Consensus 55 a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~ 132 (323)
T d1fcha_ 55 AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG 132 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-------
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhh
Confidence 344444444455555555554444332 133444444445555555555555555444321 110
Q ss_pred ----HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 010837 351 ----VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAAL 424 (499)
Q Consensus 351 ----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l 424 (499)
......+..+...+...+|...+....+...-..+..++..+...+...|++++|+..|++... +.+..+|..+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (323)
T d1fcha_ 133 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 212 (323)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhh
Confidence 0000111122233455566666666553322223455566666667777777777777766554 2345666667
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
...+...|++++|.+.++++++..|.. +.++..++.+|.+.|++++|.+.|++..+
T Consensus 213 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 213 GATLANGNQSEEAVAAYRRALELQPGY-IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcccccccchhHHHHHHHHHHHhhcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777777777766665 66677777777777777777777766654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4.6e-13 Score=120.68 Aligned_cols=263 Identities=13% Similarity=0.036 Sum_probs=172.7
Q ss_pred HHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCC-hhhHHHHHHHHhcChhh
Q 010837 191 ALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--EKD-IVVYNAMIEGYSISIET 264 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~-~~~~~~ll~~~~~~~~~ 264 (499)
.....+.+.|++++|++.|+++.+. +..+|..+..++...|++++|...|.+.. .|+ ...+..+...+... +.
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE-SL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccc-cc
Confidence 3566678888888888888887553 46678888888888888888888887765 332 23333333333333 44
Q ss_pred HHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
.++|...+..+........ ..+....... . ..+.......+..+...+.+.+|.+.+.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYA-HLVTPAEEGA-G---------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchH-HHHHhhhhhh-h---------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5555555555444321100 0000000000 0 000011111222334456677888888887664
Q ss_pred C-CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHH
Q 010837 345 C-VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDV 420 (499)
Q Consensus 345 ~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~ 420 (499)
. -..+...+..+...+...|++++|...++..... .| +...|..+..+|...|++++|++.|+++.+ +.+..+
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 3 2345677888888999999999999999998833 45 577888999999999999999999998876 346778
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC----------CchhHHHHHHHHhcCChHHHHH
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDR----------PGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
|..+..+|.+.|++++|++.|+++++..|... ...|..+..++...|+.+.+..
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999998655431 1234566777777777765543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=4.2e-09 Score=95.29 Aligned_cols=297 Identities=11% Similarity=0.025 Sum_probs=186.7
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 010837 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196 (499)
Q Consensus 117 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (499)
....+...|++++|++++++..+. .|+..... ....+..+..+|
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~----------------------------------~~~a~~~lg~~~ 61 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEE--LPPGWFYS----------------------------------RIVATSVLGEVL 61 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHH----------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHH----------------------------------HHHHHHHHHHHH
Confidence 345567788888888888887764 23221110 012345567788
Q ss_pred HhCCChhHHHHHHHhccCC-----C----hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHH
Q 010837 197 VKGGKTSYARIVFDMMLEK-----N----VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARK 267 (499)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 267 (499)
...|++++|.+.|++..+. + ...+..+...+...|++..+...+.+..
T Consensus 62 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al----------------------- 118 (366)
T d1hz4a_ 62 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF----------------------- 118 (366)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 8889999999988877441 1 2355666677788888888877766432
Q ss_pred HHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--------CChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--------KNVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
.+...............+..+...+...|+++.+...+..... .....+..+...+...++...+...+.
T Consensus 119 --~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 196 (366)
T d1hz4a_ 119 --QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLN 196 (366)
T ss_dssp --HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --HHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1110000000000112344456667788888888887776542 123345556666777888888888777
Q ss_pred HHHHcC--CCCC----HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 340 MMQECC--VQPN----YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 340 ~m~~~~--~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
+..... .... ...+..+...+...|+.++|...++.......-.+ ....+..+...+...|++++|.+.+++
T Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 276 (366)
T d1hz4a_ 197 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 276 (366)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 654321 1111 22345566677888999999999988773211111 234556678889999999999999887
Q ss_pred CCC-------CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--------CCchhHHHHHHHHhcCChHHHHH
Q 010837 412 MPE-------KP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND--------RPGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 412 ~~~-------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
+.. .| ...++..+...|...|++++|.+.++++++..... ....+..++..+...++.+++.+
T Consensus 277 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 277 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 653 12 24567788888999999999999999887643221 11234456666777777777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.2e-08 Score=92.15 Aligned_cols=266 Identities=11% Similarity=0.030 Sum_probs=179.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccC--C-C-----hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhc
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLE--K-N-----VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 260 (499)
.......+...|++++|++++++..+ + + ..++..+...+...|++++|.+.|++..+-. ..
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~-----------~~ 83 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-----------RQ 83 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------HH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------Hh
Confidence 33445667778888888888877633 1 1 2356666777777788888877776543100 00
Q ss_pred ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhCC
Q 010837 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-------K----NVFTWTSMIDGYGKNG 329 (499)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~g 329 (499)
. +.. ......+..+...+...|++..+...+.+... + ....+..+...+...|
T Consensus 84 ~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 84 H-DVW---------------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp T-TCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred h-cch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc
Confidence 0 000 00112334455667788888888887776542 1 1235566778888999
Q ss_pred ChhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCC---C--ChhHHHHHHHHHHhcC
Q 010837 330 NPNQALELFCMMQECCV----QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK---P--KMEHYACMVDLLGRAG 400 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~~ 400 (499)
+++.+...+........ .....++......+...++...+...+.......... + ....+..+...+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 99999999998876422 2234456666677778888888888877665322211 1 1334566677788999
Q ss_pred CHHHHHHHHHhCCCC------CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc----CCCC-CCchhHHHHHHHHhcCCh
Q 010837 401 SLEQALKFVLEMPEK------PNSDVWAALLSSCRLHDDVEMANIAANEIFKL----NAND-RPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 401 ~~~~a~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 469 (499)
++++|...+++.... .....+..+..++...|++++|...+++++.. +..+ ...++..++.+|.+.|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 999999999988761 22456677888999999999999999988753 2111 245788899999999999
Q ss_pred HHHHHHHHHHHh
Q 010837 470 DSVTELREKMKL 481 (499)
Q Consensus 470 ~~A~~~~~~~~~ 481 (499)
++|.+.+++..+
T Consensus 308 ~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 308 SDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.3e-09 Score=96.75 Aligned_cols=220 Identities=13% Similarity=0.109 Sum_probs=161.0
Q ss_pred HHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcC-ChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCh
Q 010837 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG-KIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNP 331 (499)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 331 (499)
..+....+..++|+..++.+++..+. +...|+....++...| ++++|...++++.+ .+..+|..+...+.+.|++
T Consensus 50 ~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~ 128 (315)
T d2h6fa1 50 RAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 128 (315)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccH
Confidence 33334447788999999999887542 4557777777777776 48999999988764 4677888888899999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC------HHH
Q 010837 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS------LEQ 404 (499)
Q Consensus 332 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~------~~~ 404 (499)
++|++.++++.+.. +-+...|..+...+.+.|++++|.+.++.+.+ +.| +...|+.+..++.+.+. +++
T Consensus 129 ~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ 204 (315)
T d2h6fa1 129 SQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLER 204 (315)
T ss_dssp TTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHH
T ss_pred HHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHH
Confidence 99999999998853 44678888888889999999999999999883 355 56677777666666554 577
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHhc--CChHHHHHHHHHH
Q 010837 405 ALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR-PGAYVALSNTLAAA--GKWDSVTELREKM 479 (499)
Q Consensus 405 a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--g~~~~A~~~~~~~ 479 (499)
|++.+.++.. +.+...|..+...+... ..+++.+.++...+..+.+. ...+..++..|... +..+.+...+++.
T Consensus 205 ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka 283 (315)
T d2h6fa1 205 EVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283 (315)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888877665 34667777776665444 45778888888888777652 33455666666543 5667777777765
Q ss_pred Hh
Q 010837 480 KL 481 (499)
Q Consensus 480 ~~ 481 (499)
.+
T Consensus 284 ~~ 285 (315)
T d2h6fa1 284 LE 285 (315)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=3.2e-08 Score=87.46 Aligned_cols=180 Identities=9% Similarity=0.076 Sum_probs=120.8
Q ss_pred ChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHH
Q 010837 299 KIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 299 ~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
..++|..+|++..+ .+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44667777776543 24556777777777788888888888887764322234467777777777788888888888
Q ss_pred HchHhcCCCC-ChhHHHHHHHH-HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 375 SMERDYSMKP-KMEHYACMVDL-LGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 375 ~~~~~~~~~p-~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
.+.+. .| +...|...... +...|+.+.|..+|+.+.. +.+...|...+..+...|+.+.|..+|+++++..+.
T Consensus 159 ~al~~---~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTS---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHh---CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 77732 23 33344333333 2345777888888877776 345677777777778888888888888888776543
Q ss_pred C---CCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 451 D---RPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 451 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+ ....|...+..-...|+.+.+.++.+++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 123577777777777888888888877654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=5.2e-10 Score=96.64 Aligned_cols=193 Identities=14% Similarity=0.014 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 361 (499)
.++..+..+|.+.|++++|...|++..+ .++.+|+.+..++.+.|++++|++.|++..+.. +-+..++..+..++.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 3555667778888888888888887663 366777788888888888888888888877753 234556777777777
Q ss_pred ccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhh----cCCHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLSSCRL----HDDVE 435 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~ 435 (499)
..|++++|...|+...+. .| +......+..++.+.+..+.+..+...... .+....+. ++..+.. .+..+
T Consensus 117 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHHH
Confidence 888888888888877733 33 333333344444455544444333322221 11111111 1222211 12233
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.+...+.......+.. ..+|..++..|...|++++|.+.+++....+
T Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHL-SETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHCCSHHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhcCccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3333333333333333 4566777888888888888888888777644
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.4e-08 Score=89.92 Aligned_cols=160 Identities=8% Similarity=0.038 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHH
Q 010837 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCM 340 (499)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (499)
+.++|+..++.+++..+. +..+|..+...+.+.|++++|+..++++.+ .+...|..+...+...|++++|++.+++
T Consensus 93 ~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~ 171 (315)
T d2h6fa1 93 DLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 171 (315)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344555555555444332 455666667777777888888888877764 3567777788888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHccc------CcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 341 MQECCVQPNYVTFLGALSACGHA------GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 341 m~~~~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
+.+.+ +-+...|+.+..++.+. +.+++|...+..+.+ +.| +...|..+...+... ..+++.+.++...
T Consensus 172 al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~---~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 172 LLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDR-GLSKYPNLLNQLL 246 (315)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHH
T ss_pred HHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHH---hCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence 87753 33455565554443333 335677777777763 245 555666555554433 3345555444433
Q ss_pred C----CCCHHHHHHHHHHHh
Q 010837 414 E----KPNSDVWAALLSSCR 429 (499)
Q Consensus 414 ~----~~~~~~~~~l~~~~~ 429 (499)
+ ..+...+..++..|.
T Consensus 247 ~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 247 DLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHTTTCCCHHHHHHHHHHHH
T ss_pred HhCCCcCCHHHHHHHHHHHH
Confidence 2 234555555555553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=2.5e-08 Score=85.75 Aligned_cols=164 Identities=11% Similarity=-0.022 Sum_probs=98.3
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
++.+|..+..+|.+.|++++|...|+++.+ | +..++..+..++...|++++|.+.|++..+.. +.+......+..+
T Consensus 70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 148 (259)
T d1xnfa_ 70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLA 148 (259)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHH
Confidence 344566677777777888888877777664 2 45567777888888888888888888887753 3344444444444
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH-HhCCC----CC-CHHHHHHHHHHHhhcCC
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV-LEMPE----KP-NSDVWAALLSSCRLHDD 433 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~----~~-~~~~~~~l~~~~~~~~~ 433 (499)
+.+.+..+.+..+..... . ..+....++ ++..+............. ..... .| ...+|..+...+...|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 224 (259)
T d1xnfa_ 149 EQKLDEKQAKEVLKQHFE-K--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 224 (259)
T ss_dssp HHHHCHHHHHHHHHHHHH-H--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhhHHHHHHHHHHhh-c--cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCC
Confidence 455555555555555444 2 122222222 222222222222222222 22221 12 23467778889999999
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 010837 434 VEMANIAANEIFKLNAND 451 (499)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~ 451 (499)
+++|.+.|+++++.+|..
T Consensus 225 ~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 225 LDSATALFKLAVANNVHN 242 (259)
T ss_dssp HHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 999999999999888765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=1.1e-07 Score=83.85 Aligned_cols=186 Identities=12% Similarity=0.104 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-C-hhHHHHHHHHHHhCCChhHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-N-VFTWTSMIDGYGKNGNPNQALELF 338 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~-~~~~~~l~~~~~~~g~~~~a~~~~ 338 (499)
+..+++..+++..++...+.+...+...+..+.+.|+++.|..+|+++.+ | + ...|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45567888888888765555666788888889999999999999999765 2 2 347889999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---
Q 010837 339 CMMQECCVQPNYVTFLGALS-ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--- 414 (499)
Q Consensus 339 ~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 414 (499)
+++.+.+. .+...|..... -+...|+.+.|..+|+.+.... +.+...|...+..+.+.|+.+.|+.+|++...
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99988643 33344433332 3445689999999999999542 33577899999999999999999999998754
Q ss_pred -CC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 415 -KP--NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 415 -~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.| ....|...+.--...|+.+.+..+.+++.+.-+..
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 22 34678888888888999999999999998876554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.84 E-value=7.3e-09 Score=92.98 Aligned_cols=268 Identities=7% Similarity=-0.118 Sum_probs=179.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccC--C-ChHhHHHHHHH----------HHhCCCHHHHHHHHHhcC--CC-ChhhHHH
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLE--K-NVICSTSMISG----------FMSQGFVEDAEEIFRKTV--EK-DIVVYNA 253 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~----------~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ 253 (499)
..++....+.+..++|+++++...+ | +...|+..-.. +...|++++|+.+++... .| +...|..
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~ 112 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 112 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3344434444445888888888754 3 23345433222 233445778888888876 34 3344444
Q ss_pred HHHHHhcC-hhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCC
Q 010837 254 MIEGYSIS-IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNG 329 (499)
Q Consensus 254 ll~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g 329 (499)
....+... .++.+++...+..+.+.........+......+...|..++|...++.+.+. +...|+.+...+.+.|
T Consensus 113 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 44444333 2457788889988888654332233345557778889999999999998863 6678888999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010837 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV 409 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 409 (499)
++++|...+.+..+. .|+.. .+...+...+..+++...+...... -.++...+..++..+...++.++|...+
T Consensus 193 ~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 265 (334)
T d1dcea1 193 PQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKEL 265 (334)
T ss_dssp CCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 988887666544332 12211 1222334445566677777776632 2234555667777888889999999999
Q ss_pred HhCCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 410 LEMPE-KP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 410 ~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
.+... .| +..++..+..++...|++++|.+.++++++.+|.. ...|..|...+.-
T Consensus 266 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~-~~y~~~L~~~~~~ 322 (334)
T d1dcea1 266 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAYLDDLRSKFLL 322 (334)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHH
T ss_pred HHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc-HHHHHHHHHHHhH
Confidence 88876 33 45678888999999999999999999999998865 6677777666653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=1.6e-08 Score=90.76 Aligned_cols=227 Identities=7% Similarity=-0.082 Sum_probs=144.5
Q ss_pred HhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCC--CHHHHHHHHHhcC--CC-ChhhHHHHHHHHhcChhhHHHH
Q 010837 197 VKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQG--FVEDAEEIFRKTV--EK-DIVVYNAMIEGYSISIETARKA 268 (499)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~~a 268 (499)
...|++++|+.+++...+ ++...|..+..++...+ ++++|...+.++. .| +...+...+..+....+..+.|
T Consensus 84 ~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence 344456666666666643 24555666665555554 3667777777665 22 3344444444444444666777
Q ss_pred HHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010837 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348 (499)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 348 (499)
...++.+++..+ -+...|+.+..++.+.|++++|...+....+-...... ....+...+..+++...+....... ++
T Consensus 164 l~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~a~~~~~~~l~~~-~~ 240 (334)
T d1dcea1 164 LAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE-LVQNAFFTDPNDQSAWFYHRWLLGR-AE 240 (334)
T ss_dssp HHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH-HHHHHHHHCSSCSHHHHHHHHHHSC-CC
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHH-HHHHHHHhcchhHHHHHHHHHHHhC-cc
Confidence 777777666554 25567777888888888888776666554432222222 2333455677778888888777653 33
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHH
Q 010837 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALL 425 (499)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~ 425 (499)
+...+..+...+...|+.++|...+.... ...| +...+..+..+|...|++++|++.++++.+ .|+ ...|..|.
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 241 PLFRCELSVEKSTVLQSELESCKELQELE---PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317 (334)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHH---hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 44455556666677788888888888777 3455 566778888889999999999999998876 453 45566565
Q ss_pred HHHh
Q 010837 426 SSCR 429 (499)
Q Consensus 426 ~~~~ 429 (499)
..+.
T Consensus 318 ~~~~ 321 (334)
T d1dcea1 318 SKFL 321 (334)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=2.9e-07 Score=80.35 Aligned_cols=190 Identities=11% Similarity=-0.011 Sum_probs=120.0
Q ss_pred HHHHHhcCChHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CC--CHHHHHHH
Q 010837 291 VDMYAKCGKIDDARRVFDHMQQ-----KN----VFTWTSMIDGYGKNGNPNQALELFCMMQECCV---QP--NYVTFLGA 356 (499)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~p--~~~~~~~l 356 (499)
...|...|++++|...|.++.+ .+ ..+|..+..+|.+.|++++|.+.+++..+... .+ ...++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 4567788888888888877653 12 24677788888888888888888887644211 11 12345556
Q ss_pred HHHHc-ccCcHHHHHHHHHHchHh---cCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C---C----CH-HHHH
Q 010837 357 LSACG-HAGLVDKGREIFESMERD---YSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-K---P----NS-DVWA 422 (499)
Q Consensus 357 l~~~~-~~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~---~----~~-~~~~ 422 (499)
...|. ..|++++|...+++..+- .+..+ ...++..+...|...|++++|++.|+++.. . + .. ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 66663 468888888888876532 12112 234577788888888999999988887544 1 1 11 2344
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCCC----chhHHHHHHHHh--cCChHHHHHHHHHHH
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRP----GAYVALSNTLAA--AGKWDSVTELREKMK 480 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 480 (499)
..+..+...|+++.|.+.+++..+..+.... .....++.++.. .+.+++|...|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4555667788899998888888877665311 233455566554 345777777776544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=5e-06 Score=72.20 Aligned_cols=196 Identities=11% Similarity=0.069 Sum_probs=116.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccCC-----C----hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHh
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLEK-----N----VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~ 259 (499)
|......|...|++++|.+.|.+..+- + ..+|..+..+|.+.|++++|.+.+++..+ .+.
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~-----------~~~ 108 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ-----------IFT 108 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH-----------Hhh
Confidence 444567788999999999998887431 2 34778888888888888888887765421 111
Q ss_pred cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHH-hcCChHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhCC
Q 010837 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA-KCGKIDDARRVFDHMQQ-----K----NVFTWTSMIDGYGKNG 329 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~g 329 (499)
.. +....+ ..++..+...|. ..|++++|...|++..+ . -..++..+...+...|
T Consensus 109 ~~-~~~~~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g 172 (290)
T d1qqea_ 109 HR-GQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172 (290)
T ss_dssp HT-TCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hc-ccchhH---------------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC
Confidence 11 111111 122333444453 35777777777776542 1 1234666777888888
Q ss_pred ChhHHHHHHHHHHHcCCCC-----CH-HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC------hhHHHHHHHHHH
Q 010837 330 NPNQALELFCMMQECCVQP-----NY-VTFLGALSACGHAGLVDKGREIFESMERDYSMKPK------MEHYACMVDLLG 397 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p-----~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~ 397 (499)
++++|.+.|++........ .. ..+...+.++...|+++.|...+++.. .+.|. ......++.++.
T Consensus 173 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~---~~~~~~~~sre~~~l~~l~~a~~ 249 (290)
T d1qqea_ 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSLIDAVN 249 (290)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HhCCCccchHHHHHHHHHHHHHH
Confidence 8888888888876642111 11 122334445566788888888888776 33331 223445555554
Q ss_pred h--cCCHHHHHHHHHhCCC
Q 010837 398 R--AGSLEQALKFVLEMPE 414 (499)
Q Consensus 398 ~--~~~~~~a~~~~~~~~~ 414 (499)
. .+.+++|+..|+++..
T Consensus 250 ~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 250 EGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp TTCTTTHHHHHHHHTTSSC
T ss_pred hcCHHHHHHHHHHHHHHhh
Confidence 4 3457777777776664
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=3.4e-07 Score=74.16 Aligned_cols=123 Identities=10% Similarity=-0.030 Sum_probs=97.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcC
Q 010837 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAG 400 (499)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 400 (499)
...+...|++++|++.|.++ .+|+..++..+..+|...|++++|.+.|++..+ +.| +...|..+..+|.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH---HhhhhhhhHHHHHHHHHhhc
Confidence 55667889999999888764 356778888888899999999999999999883 355 6778888888999999
Q ss_pred CHHHHHHHHHhCCC--CC----------------CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 401 SLEQALKFVLEMPE--KP----------------NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 401 ~~~~a~~~~~~~~~--~~----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
++++|++.|++... +. ...++..+..++.+.|++++|.+.++.+++..+.+
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999988887643 11 13556677778888899999999888888877765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.62 E-value=9.7e-08 Score=78.36 Aligned_cols=94 Identities=4% Similarity=-0.159 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHH
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVD 394 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 394 (499)
..+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...|+.+. .+.| +...|..+..
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFLGQ 80 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHHHHH
Confidence 334444455555555555555555554432 3344445555555555555555555555554 3344 3444555555
Q ss_pred HHHhcCCHHHHHHHHHhCC
Q 010837 395 LLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~ 413 (499)
+|.+.|++++|+..|+++.
T Consensus 81 ~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=7.5e-07 Score=72.04 Aligned_cols=123 Identities=10% Similarity=-0.061 Sum_probs=102.7
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHH
Q 010837 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370 (499)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 370 (499)
...+...|+++.|.+.|+++..++..+|..+..+|...|++++|++.|++..+.+ +-+...|..+..+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3457889999999999999998999999999999999999999999999999864 456778999999999999999999
Q ss_pred HHHHHchHhcC-----------CC--C-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 371 EIFESMERDYS-----------MK--P-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 371 ~~~~~~~~~~~-----------~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
+.|++...... .. . ...++..+..++.+.|++++|.+.+.....
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99998763211 11 1 124566788889999999999999988765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.57 E-value=1.8e-07 Score=76.63 Aligned_cols=121 Identities=10% Similarity=-0.073 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHH
Q 010837 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP-NSDVWAA 423 (499)
Q Consensus 347 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~ 423 (499)
.|+...+......+.+.|++++|+..|+++... .| +...|..+..+|.+.|++++|+..|+++.+ .| +..+|..
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~ 77 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 77 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHH
Confidence 377778888889999999999999999998833 45 778899999999999999999999999987 34 6788999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHH
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (499)
+..+|...|++++|+..|+++++..|.. ...+...+..+...+....
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~l~~~~~~~ 124 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYSLAKEQ-RLNFGDDIPSALRIAKKKR 124 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999877765 4445455555554443333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2.7e-07 Score=67.97 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=39.0
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHH
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
+.+.|++++|+..|++..+. .| +...|..+..+|...|++++|+..+++... +.+...|..+..++...|++++
T Consensus 13 ~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 33444444444444444421 22 333444444444444444444444444433 2334444444444444444444
Q ss_pred HHHHHHHHHhcCCCC
Q 010837 437 ANIAANEIFKLNAND 451 (499)
Q Consensus 437 a~~~~~~~~~~~~~~ 451 (499)
|+..++++++..|..
T Consensus 90 A~~~~~~a~~~~p~~ 104 (117)
T d1elwa_ 90 AKRTYEEGLKHEANN 104 (117)
T ss_dssp HHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 444444444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=2.7e-07 Score=67.92 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=83.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCCh
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 469 (499)
-...+.+.|++++|+..|+++.. +.+...|..+..++...|++++|+..++++++.+|.. +..|..++.++...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch-hhHHHHHHHHHHHccCH
Confidence 45678899999999999999876 5677889999999999999999999999999999988 89999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 010837 470 DSVTELREKMKLRG 483 (499)
Q Consensus 470 ~~A~~~~~~~~~~~ 483 (499)
++|...+++..+..
T Consensus 88 ~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998743
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=4.1e-07 Score=71.27 Aligned_cols=115 Identities=11% Similarity=-0.018 Sum_probs=88.8
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD 433 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 433 (499)
...|.+.|++++|...|+++.+. .| +...|..+..+|...|++++|++.|+++.+ +.+..+|..++.++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 45677888999999999888833 45 677888888889999999999999988876 4566788888999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHH--HhcCChHHHHHH
Q 010837 434 VEMANIAANEIFKLNANDRPGAYVALSNTL--AAAGKWDSVTEL 475 (499)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~ 475 (499)
+++|...++++++..|.. ...+..+..+. .+.+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999988876 66666655543 334445555543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.48 E-value=3.2e-07 Score=66.85 Aligned_cols=90 Identities=13% Similarity=0.028 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC
Q 010837 390 ACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467 (499)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 467 (499)
-.+...+.+.|++++|+..|++... +.+..+|..+..++.+.|++++|+..++++++.+|.. ..++..++.+|...|
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc-ccchHHHHHHHHHCC
Confidence 3456778899999999999999876 3468899999999999999999999999999999988 899999999999999
Q ss_pred ChHHHHHHHHHHH
Q 010837 468 KWDSVTELREKMK 480 (499)
Q Consensus 468 ~~~~A~~~~~~~~ 480 (499)
++++|.+.+++..
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=9.3e-07 Score=69.15 Aligned_cols=92 Identities=16% Similarity=0.057 Sum_probs=84.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 391 CMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
.....|.+.|++++|+..|+++.+ +.+...|..+..+|...|++++|.+.|+++++.+|.. ..+|..++.+|...|+
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc-hHHHHHHHHHHHHcCC
Confidence 345678899999999999999887 5678899999999999999999999999999999988 8999999999999999
Q ss_pred hHHHHHHHHHHHhCC
Q 010837 469 WDSVTELREKMKLRG 483 (499)
Q Consensus 469 ~~~A~~~~~~~~~~~ 483 (499)
+++|...+++.....
T Consensus 94 ~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 94 FRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=8.1e-06 Score=64.28 Aligned_cols=133 Identities=12% Similarity=0.039 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 396 (499)
.+......+.+.|++++|+..|++..+..... .+....-......+. ..+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~--------------~~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYE--------------SSFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC--------------CCCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--------------cccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 34455566777777888877777766531000 000000001111111 23577788899
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHH
Q 010837 397 GRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 472 (499)
.+.|++++|+..+++... +.+..+|..+..+|...|++++|+..|+++++.+|.. +.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877 4478899999999999999999999999999999876 77777777776665554443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=2.5e-06 Score=62.80 Aligned_cols=94 Identities=12% Similarity=-0.007 Sum_probs=67.8
Q ss_pred HHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC---HHHHHHHHHhCCC-CCCH---HHHHHHHH
Q 010837 355 GALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS---LEQALKFVLEMPE-KPNS---DVWAALLS 426 (499)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-~~~~---~~~~~l~~ 426 (499)
.++..+...+++++|++.|+.... ..| +..++..+..++.+.++ +++|+.+|+++.. .|+. .+|..+..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 456667777788888888888773 234 66777777777776444 4468888888765 2322 36677788
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+|.+.|++++|++.|+++++..|..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~ 105 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQN 105 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCC
Confidence 8888888888888888888888776
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.16 E-value=0.00036 Score=59.05 Aligned_cols=182 Identities=12% Similarity=-0.015 Sum_probs=112.0
Q ss_pred CChHHHHHHHHhcCCC-ChhHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHcccCcHHHHHH
Q 010837 298 GKIDDARRVFDHMQQK-NVFTWTSMIDGYGK----NGNPNQALELFCMMQECCVQPNYVTFL-GALSACGHAGLVDKGRE 371 (499)
Q Consensus 298 g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~ 371 (499)
.+...|...+....+. +......+...+.. .++.+.|...++...+.|.......+. ..............+..
T Consensus 52 ~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~ 131 (265)
T d1ouva_ 52 KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVE 131 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred hhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHH
Confidence 3555566555555433 33344444433332 456677777777777655322211111 11111223455666777
Q ss_pred HHHHchHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHH
Q 010837 372 IFESMERDYSMKPKMEHYACMVDLLGR----AGSLEQALKFVLEMPEKPNSDVWAALLSSCRL----HDDVEMANIAANE 443 (499)
Q Consensus 372 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 443 (499)
.+.... . ..+...+..|...|.. ..+...+..+++...+..+......+...+.. ..++++|+..|++
T Consensus 132 ~~~~~~-~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~ 207 (265)
T d1ouva_ 132 YFTKAC-D---LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSK 207 (265)
T ss_dssp HHHHHH-H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred Hhhhhh-c---ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhh
Confidence 766655 2 2344556666666664 45677777777777666677777777666654 5689999999999
Q ss_pred HHhcCCCCCCchhHHHHHHHHh----cCChHHHHHHHHHHHhCCCcc
Q 010837 444 IFKLNANDRPGAYVALSNTLAA----AGKWDSVTELREKMKLRGVLK 486 (499)
Q Consensus 444 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 486 (499)
..+.|. +..+..|+.+|.+ ..+.++|.+.|++..+.|..+
T Consensus 208 aa~~g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 208 ACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred hhcccC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 888763 5677888888875 347888999998888877543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=4.5e-06 Score=62.25 Aligned_cols=90 Identities=10% Similarity=0.027 Sum_probs=42.3
Q ss_pred HHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-----HHHHHHH
Q 010837 355 GALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPN-----SDVWAAL 424 (499)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-----~~~~~~l 424 (499)
.+...+...|++++|+..|.+..+. .| +...+..+..+|.+.|++++|++.++++.+ .+. ..+|..+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444455555555555555555521 23 344455555555555555555555554443 011 1234444
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhc
Q 010837 425 LSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
...+...+++++|++.+++.+..
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 44444555555555555554443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=3e-06 Score=62.38 Aligned_cols=94 Identities=6% Similarity=-0.035 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHHhcCCCCC-CchhHHHHHHH
Q 010837 390 ACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHD---DVEMANIAANEIFKLNANDR-PGAYVALSNTL 463 (499)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 463 (499)
..++..+...+++++|.+.|++... +.+..++..+..++.+.+ ++++|+++++++++.++.++ ..++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4577888899999999999999887 567889999999998755 45679999999998877663 34788999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 010837 464 AAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~ 483 (499)
.+.|++++|.+.++++.+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999998844
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=0.00097 Score=57.81 Aligned_cols=132 Identities=14% Similarity=0.054 Sum_probs=63.8
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcC
Q 010837 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261 (499)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 261 (499)
+......++..|-..|.+++...+++.... .+...++.++..|++.+ .++..+.++... +......++..|-.
T Consensus 98 ~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s--~~y~~~k~~~~c~~- 173 (336)
T d1b89a_ 98 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFW--SRVNIPKVLRAAEQ- 173 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS--TTSCHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhcc--ccCCHHHHHHHHHH-
Confidence 333444566666777777777777765432 24556666777666654 334444443321 11111222222211
Q ss_pred hhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 010837 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (499)
...|.-++-.|.+.|.++.|..+.-.-. ++..-....+..+.+.++.+...++....
T Consensus 174 ----------------------~~l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~y 230 (336)
T d1b89a_ 174 ----------------------AHLWAELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFY 230 (336)
T ss_dssp ----------------------TTCHHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred ----------------------cCChHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHH
Confidence 1123335555666777776665543321 12222333445555555555555555444
Q ss_pred HH
Q 010837 342 QE 343 (499)
Q Consensus 342 ~~ 343 (499)
.+
T Consensus 231 L~ 232 (336)
T d1b89a_ 231 LE 232 (336)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.08 E-value=3.1e-05 Score=60.68 Aligned_cols=93 Identities=10% Similarity=0.017 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 010837 387 EHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464 (499)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (499)
.+|..+..+|.+.|++++|+..++++.. +.+..+|..+..++...|++++|...|+++++.+|.. ..+...+..+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~ 143 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 3567788889999999999999998876 5678899999999999999999999999999999877 777777777766
Q ss_pred hcCChHH-HHHHHHHHH
Q 010837 465 AAGKWDS-VTELREKMK 480 (499)
Q Consensus 465 ~~g~~~~-A~~~~~~~~ 480 (499)
+.+...+ ..+++..|.
T Consensus 144 ~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 6655443 444555543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.08 E-value=1e-05 Score=58.56 Aligned_cols=86 Identities=9% Similarity=-0.105 Sum_probs=43.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcC
Q 010837 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAG 400 (499)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 400 (499)
...+.+.|++++|...|++..+.. +-+...|..+..++.+.|++++|+..|+...+ +.| +...+..+..+|...|
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHHCC
Confidence 344455555555555555555432 22344555555555555555555555555552 233 3445555555555555
Q ss_pred CHHHHHHHHHh
Q 010837 401 SLEQALKFVLE 411 (499)
Q Consensus 401 ~~~~a~~~~~~ 411 (499)
++++|++.+++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=2.2e-05 Score=61.64 Aligned_cols=132 Identities=10% Similarity=0.038 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDL 395 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 395 (499)
.+......+...|++++|++.|.+..+. ............ ...+.| ....|..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~----------~~~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDAD----------GAKLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHH----------HGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHH----------HHHhChhhHHHHHHHHHH
Confidence 3445566677788888888888776531 000000000000 001123 45567788889
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHH
Q 010837 396 LGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (499)
|.+.|++++|+..++++.+ +.+..+|..+..++...|++++|++.|+++++..|.. ..+...+..+..+.....+
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n-~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877 5677899999999999999999999999999998876 6677777666654444333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.4e-06 Score=81.98 Aligned_cols=208 Identities=8% Similarity=-0.060 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHH-HHHHHHHhCCChhHHHHHHHHHHHcC
Q 010837 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT-SMIDGYGKNGNPNQALELFCMMQECC 345 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (499)
+|.+.+++..+.... ....+..+..+|...|++++| |+++...|+.... .-+....-...+..+.+.++...+..
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~ 79 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNR 79 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 556666666553321 122333355556666666655 4444332221100 00111111112344556666555443
Q ss_pred CCCCHHHHHHHHHH--HcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 010837 346 VQPNYVTFLGALSA--CGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422 (499)
Q Consensus 346 ~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 422 (499)
..++..-....+.. ....+.++.+...+.... ++.| +...+..+...+.+.|+.++|...++.........++.
T Consensus 80 ~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 156 (497)
T d1ya0a1 80 ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLV 156 (497)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------CCHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHH
Confidence 33332222111111 112334445544444333 4444 45556666777777777777776655443311234666
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
.+...+...|++++|+..++++.+..|.. ..+|+.|+.++...|+..+|...|.+....
T Consensus 157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~-~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 157 HLGDIARYRNQTSQAESYYRHAAQLVPSN-GQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTB-SHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 67777788888888888888888888777 778888888888888888888777776653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=2.3e-05 Score=61.62 Aligned_cols=64 Identities=11% Similarity=0.006 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.+|+.+..+|.+.|++++|+..++.+++.+|.. +.++..++.+|...|++++|...|++..+.+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccc-hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 467778889999999999999999999999988 9999999999999999999999999998754
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.98 E-value=6e-05 Score=57.91 Aligned_cols=75 Identities=12% Similarity=0.014 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 387 EHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
.+|..+..+|.+.|++++|++.++++.+ +.+..+|..++.++...|++++|+..|+++++.+|.. ..+...+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n-~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 4566777788888888888888887766 4467788888888888888888888888888888776 5555544443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.93 E-value=0.0023 Score=53.77 Aligned_cols=227 Identities=11% Similarity=-0.020 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhccCC-ChHhHHHHHHHHHh----CCCHHHHHHHHHhcCCCCh-hhHHHHHHHHh
Q 010837 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMS----QGFVEDAEEIFRKTVEKDI-VVYNAMIEGYS 259 (499)
Q Consensus 186 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~-~~~~~ll~~~~ 259 (499)
+..+..|...+.+.+|+++|++.|++..+. +..++..|...|.. ..+...|...+....+++. .....+...+.
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~ 81 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY 81 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccc
Confidence 445556666666777777777777776443 45555555555554 3455555555555443221 11111111111
Q ss_pred cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC-ChhHHHHHHHHHHh----CCChhHH
Q 010837 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGK----NGNPNQA 334 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a 334 (499)
.. .....+.+.|...++...+. .......+...+.. ......+
T Consensus 82 ~~--------------------------------~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a 129 (265)
T d1ouva_ 82 SG--------------------------------QGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKA 129 (265)
T ss_dssp HT--------------------------------SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cc--------------------------------cccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHH
Confidence 00 00122334444444443322 22222222222221 2334445
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHcc----cCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----cCCHHHHH
Q 010837 335 LELFCMMQECCVQPNYVTFLGALSACGH----AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----AGSLEQAL 406 (499)
Q Consensus 335 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~ 406 (499)
...+...... .+...+..+...+.. ..+...+...++... +.| +......|...|.. ..++++|+
T Consensus 130 ~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~-~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~ 202 (265)
T d1ouva_ 130 VEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKAC-DLK---DSPGCFNAGNMYHHGEGATKNFKEAL 202 (265)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred HHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccc-ccc---ccccccchhhhcccCcccccchhhhh
Confidence 5555554442 234444444444442 445666666666665 212 33444445555544 46788888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCC
Q 010837 407 KFVLEMPEKPNSDVWAALLSSCRL----HDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 407 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.+|++..+.-++..+..|...|.. ..+.++|.+.|+++.+.|..+
T Consensus 203 ~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 203 ARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred hhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 888777665666777777776654 347778888888887777543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.87 E-value=4.9e-05 Score=59.99 Aligned_cols=119 Identities=9% Similarity=-0.042 Sum_probs=79.6
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL-EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 435 (499)
.......|++++|.+.|..... +.+.... ..+ ..+.+ .....-++ ......+..+..++...|+++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~---l~rG~~l-----~~~-~~~~w~~~~r~~l~----~~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALR---EWRGPVL-----DDL-RDFQFVEPFATALV----EDKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT---TCCSSTT-----GGG-TTSTTHHHHHHHHH----HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh---hCccccc-----ccC-cchHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCch
Confidence 3456778888888888888873 2221110 000 00110 00000011 112356677888888899999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccCcc
Q 010837 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK-----LRGVLKDTG 489 (499)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 489 (499)
+|+..++++++.+|.. ...|..++.+|.+.|+.++|++.|+++. +.|+.|.+.
T Consensus 85 ~Al~~~~~al~~~P~~-e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 85 AVIAELEALTFEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHhCCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 9999999999998887 8889999999999999999999888874 368888754
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.84 E-value=7e-05 Score=57.48 Aligned_cols=64 Identities=17% Similarity=0.062 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.+|..+..+|.+.|++++|++.++++++.+|.. ..+|..++.+|...|++++|...|++..+.+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~-~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN-VKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchh-hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 467788899999999999999999999999988 8999999999999999999999999988754
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.00011 Score=54.38 Aligned_cols=96 Identities=15% Similarity=0.057 Sum_probs=61.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-----hhHHHHH
Q 010837 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-----MEHYACM 392 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l 392 (499)
+..+...+.+.|++++|+..|++..+.+ +.+...+..+..+|.+.|++++|...++++.+-..-.+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3445666777777777777777777653 345666777777777777777777777776621100111 2355566
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC
Q 010837 393 VDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
...+...+++++|++.|++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 6666777777777777766543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=4.4e-05 Score=59.91 Aligned_cols=66 Identities=9% Similarity=-0.027 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
....|..+..++.+.|++++|+..++++++..|.. +.+|..++.+|.+.|++++|.+.|++..+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~-~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh-hhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 44567788889999999999999999999999987 9999999999999999999999999998753
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.68 E-value=9.5e-05 Score=57.78 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.+|..+..+|.+.|++++|+..++++++.+|.. ..+|..++.+|...|++++|...|++..+.+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~-~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 456678888999999999999999999999988 8999999999999999999999999998743
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.62 E-value=0.016 Score=49.95 Aligned_cols=271 Identities=9% Similarity=0.029 Sum_probs=121.3
Q ss_pred CChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhH
Q 010837 109 RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188 (499)
Q Consensus 109 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 188 (499)
+|..--..+...|.+.|.++.|..+|..+.. |.-++..+ ...++.+.|..+.... -+..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~-----v~l~~~~~avd~~~k~------~~~~~ 71 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTL-----VHLGEYQAAVDGARKA------NSTRT 71 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHH-----HTTTCHHHHHHHHHHH------TCHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHH-----HhhccHHHHHHHHHHc------CCHHH
Confidence 4444444556666677777777777765532 34444444 4444455544444322 24446
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHhcChhhH
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETA 265 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~ 265 (499)
|..+...+.+..+..-|.- .......+......++..|-..|.+++...+++... ..+...++.++..+++. +
T Consensus 72 ~k~~~~~l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~-~-- 147 (336)
T d1b89a_ 72 WKEVCFACVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-K-- 147 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-C--
T ss_pred HHHHHHHHHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh-C--
Confidence 6666666666555443321 111111233344556666666666666666666543 23334455555555443 1
Q ss_pred HHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 010837 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345 (499)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (499)
..++.+.+.... +..-...++..|-+.+- |..++-.|.+.|+++.|..++- +
T Consensus 148 --~~kl~e~l~~~s---~~y~~~k~~~~c~~~~l------------------~~elv~Ly~~~~~~~~A~~~~i---~-- 199 (336)
T d1b89a_ 148 --PQKMREHLELFW---SRVNIPKVLRAAEQAHL------------------WAELVFLYDKYEEYDNAIITMM---N-- 199 (336)
T ss_dssp --HHHHHHHHHHHS---TTSCHHHHHHHHHTTTC------------------HHHHHHHHHHTTCHHHHHHHHH---H--
T ss_pred --hHHHHHHHHhcc---ccCCHHHHHHHHHHcCC------------------hHHHHHHHHhcCCHHHHHHHHH---H--
Confidence 112222222211 01111122333333333 3444455556666666655432 2
Q ss_pred CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----------
Q 010837 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE----------- 414 (499)
Q Consensus 346 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------- 414 (499)
..++......++..+.+..+.+...++.....+. .| ...+.|+......-+..+..+.+++-..
T Consensus 200 ~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v 274 (336)
T d1b89a_ 200 HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSV 274 (336)
T ss_dssp STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHH
T ss_pred cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 1233323334455556666666666655555521 23 2335555555555555565555554332
Q ss_pred --CCCHHHHHHHHHHHhhcCCHHH
Q 010837 415 --KPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 415 --~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
..+....+++...|...+|++.
T Consensus 275 ~~~n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 275 QNHNNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcChHHHHHHHHHHHhCcchhHH
Confidence 2344555566666666666543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=1.4e-05 Score=75.02 Aligned_cols=223 Identities=9% Similarity=-0.074 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHH-HHHHHHHhCCCHHHHHHHHHhcCC-
Q 010837 169 LGRMVHAQILKCDVKAD-DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST-SMISGFMSQGFVEDAEEIFRKTVE- 245 (499)
Q Consensus 169 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~- 245 (499)
+|.+.+++..+. .|+ ...+..+..++...|++++| |+++...|..... .-+....-...+..+.+.++...+
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccc
Confidence 566777777653 333 23455566677777777765 5555433322110 001111101123455566655442
Q ss_pred ---CChhhHHH-HHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCCh-hHHHH
Q 010837 246 ---KDIVVYNA-MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV-FTWTS 320 (499)
Q Consensus 246 ---~~~~~~~~-ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~ 320 (499)
++...... +...+....+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+....+++. .++..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 157 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVH 157 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHH
Confidence 22222222 22222222233334433333332221 23455667777888888999998888777665433 46777
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcC
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 400 (499)
+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+.. . -..|-...+..|...+.+..
T Consensus 158 LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral-~-~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 158 LGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSI-A-VKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH-S-SSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH-h-CCCCCHHHHHHHHHHHHHhh
Confidence 8888999999999999999998852 4456789999999999999999999999888 2 22456777888887776543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.53 E-value=0.00084 Score=52.60 Aligned_cols=73 Identities=8% Similarity=0.031 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchH----hcCCCCChhH
Q 010837 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER----DYSMKPKMEH 388 (499)
Q Consensus 315 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 388 (499)
...+..+...+...|++++|+..++++.+.. +-+...|..++.+|...|+.++|.+.|+++.+ ..|+.|...+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3456777888888888888888888888753 55777888888888888888888888887642 3588887654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.52 E-value=8.9e-05 Score=62.50 Aligned_cols=123 Identities=13% Similarity=0.045 Sum_probs=79.4
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHH
Q 010837 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 403 (499)
..+.|++++|+..+++..+.. +-|...+..+...++..|++++|.+.++...+ +.|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 346788888888888888753 45667888888888888888888888888873 3563 444444444444444444
Q ss_pred HHHHHHHhCC--CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 404 QALKFVLEMP--EKPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 404 ~a~~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
++..-..... ..|+ ...+......+...|+.++|.+.++++.+..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 4332221111 1232 2334444556777888888888888888877665
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.51 E-value=0.00021 Score=54.91 Aligned_cols=90 Identities=14% Similarity=0.015 Sum_probs=63.6
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC----CC----------CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-----C--
Q 010837 393 VDLLGRAGSLEQALKFVLEMPE----KP----------NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN-----D-- 451 (499)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~-- 451 (499)
...+...|++++|++.|++..+ -| ...+|+.+..+|...|++++|.+.+++.++..+. +
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3345566777777777766654 11 1356778888888889988888888888764221 1
Q ss_pred ---CCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 452 ---RPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 452 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
...++..++.+|.+.|++++|.+.|++..+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0225777899999999999999999887653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.51 E-value=8.4e-05 Score=56.37 Aligned_cols=44 Identities=11% Similarity=0.168 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 010837 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 484 (499)
++++|.+.|+++++..|.. ...+..|... ..|.+++.+..+.|+
T Consensus 101 ~~~~A~~~~~kal~l~P~~-~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDN-THYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTC-HHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred hHHHhhhhhhcccccCCCH-HHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 4678888999999888876 4333333333 355666666666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.45 E-value=2.7e-05 Score=65.73 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=82.0
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCCHHH
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~ 436 (499)
..+.|++++|...+++..+ ..| +...+..+...|+..|++++|.+.|+...+ .|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 4567999999999999983 356 788999999999999999999999999876 454 4455444444433333332
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+..........+..+....+...+..+.+.|+.++|.+.+++..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 22111111111111112334455677889999999999999987643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00035 Score=48.31 Aligned_cols=72 Identities=10% Similarity=0.050 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHH
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE--------KPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 458 (499)
.+-.+...+.+.|++++|+..|++... .++ ..++..+..++.+.|++++|+..++++++.+|.. +.+++.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~-~~a~~N 85 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH-QRANGN 85 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC-HHHHHH
Confidence 344567777778888888777776643 122 4577888888888888888888888888888877 556555
Q ss_pred HH
Q 010837 459 LS 460 (499)
Q Consensus 459 l~ 460 (499)
+.
T Consensus 86 l~ 87 (95)
T d1tjca_ 86 LK 87 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.12 E-value=0.0022 Score=48.95 Aligned_cols=90 Identities=11% Similarity=-0.062 Sum_probs=55.7
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCCC----------hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC----
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKPK----------MEHYACMVDLLGRAGSLEQALKFVLEMPE--------KPN---- 417 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~---- 417 (499)
+...|++++|+..|++..+-..-.|+ ...|+.+..+|...|++++|.+.+++... .++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 34445555555555555532111111 24566677777777777777766665442 111
Q ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 010837 418 -SDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 418 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (499)
...+..+..+|...|++++|++.|+++++..+
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 23567778889999999999999999887544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.08 E-value=0.00022 Score=53.90 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCC-----------hHHHHHHHHHHHhCC
Q 010837 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK-----------WDSVTELREKMKLRG 483 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~ 483 (499)
+.+++|+..++++++.+|.. ..+|..++.+|...|+ +++|.+.|++..+..
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~-~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKK-DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcchh-hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 45678999999999999988 8899999999987653 688888888887643
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.13 Score=46.37 Aligned_cols=357 Identities=12% Similarity=0.039 Sum_probs=209.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhcccccc
Q 010837 82 ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161 (499)
Q Consensus 82 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 161 (499)
.....+..+.+.++++.....+..-+ .+...-.....+....|+..+|.+.+..+-..|.
T Consensus 74 lr~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~------------------- 133 (450)
T d1qsaa1 74 LQSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK------------------- 133 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-------------------
T ss_pred HHHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-------------------
Confidence 34455677888899988887775432 3555555677888889999999888887765431
Q ss_pred CCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHH
Q 010837 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
...+....++..+.+.| ..+...+-.-+......|++..|..+...+...........+..... ...+.....
T Consensus 134 ---~~p~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~ 206 (450)
T d1qsaa1 134 ---SQPNACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR 206 (450)
T ss_dssp ---CCCTHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH
T ss_pred ---CCchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHh
Confidence 12233444555555555 45555555666677788999999999988876655555555555433 233333332
Q ss_pred hcCCCChhhHHHHHHHHhc-ChhhHHHHHHHHHHHHHcccCCCchhH---HHHHHHHHhcCChHHHHHHHHhcCC--CCh
Q 010837 242 KTVEKDIVVYNAMIEGYSI-SIETARKALEVHCQLIKNVFFEDVKLG---SALVDMYAKCGKIDDARRVFDHMQQ--KNV 315 (499)
Q Consensus 242 ~~~~~~~~~~~~ll~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~--~~~ 315 (499)
.. ..+......+..++.+ ...+.+.+..++............... ..+...+...+..+.+...+..... .+.
T Consensus 207 ~~-~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 285 (450)
T d1qsaa1 207 TT-GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST 285 (450)
T ss_dssp HS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH
T ss_pred cC-CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccch
Confidence 22 2233222222233222 124556777777776654332222111 1122222344666777766655442 344
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHH
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 395 (499)
....-.+......+++..+...+..|-.. ......-.--+..++...|+.+.|...|..+. . .++ .|.-|...
T Consensus 286 ~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a-~---~~~--fYG~LAa~ 358 (450)
T d1qsaa1 286 SLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLM-Q---QRG--FYPMVAAQ 358 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T---SCS--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHh-c---CCC--hHHHHHHH
Confidence 44444555566778999999988887532 22233444456678889999999999999887 2 233 34444332
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC-HH---HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHH
Q 010837 396 LGRAGSLEQALKFVLEMPEKPN-SD---VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (499)
+.|..-. .. .......+. .. .-..-+..+...|....|...|..+.... +......++....+.|.++.
T Consensus 359 --~Lg~~~~-~~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~---~~~~~~~la~lA~~~g~~~~ 431 (450)
T d1qsaa1 359 --RIGEEYE-LK-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDL 431 (450)
T ss_dssp --HTTCCCC-CC-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHH
T ss_pred --HcCCCCC-CC-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCChhH
Confidence 2222100 00 000011111 11 11123456778899999999998887542 25677788888999999999
Q ss_pred HHHHHHHHH
Q 010837 472 VTELREKMK 480 (499)
Q Consensus 472 A~~~~~~~~ 480 (499)
|+....+..
T Consensus 432 aI~a~~~~~ 440 (450)
T d1qsaa1 432 SVQATIAGK 440 (450)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 998876653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.15 Score=46.10 Aligned_cols=107 Identities=7% Similarity=-0.083 Sum_probs=56.3
Q ss_pred HHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHH
Q 010837 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE 270 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 270 (499)
..+..+.+.++++..++.+...+ .+...-.....+....|+.++|.+.+..+-.. .....+.+..
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~--------------~~~~p~~c~~ 141 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT--------------GKSQPNACDK 141 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC--------------SSCCCTHHHH
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------------CCCCchHHHH
Confidence 34556677788877666554322 24444556677788888888888777655311 0011112233
Q ss_pred HHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 010837 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313 (499)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 313 (499)
++..+.+.|. .+...+-.-+......|+...|..+...+...
T Consensus 142 l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~ 183 (450)
T d1qsaa1 142 LFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD 183 (450)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChh
Confidence 3333333332 22222223344455556666666666655443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.0027 Score=43.55 Aligned_cols=66 Identities=12% Similarity=0.032 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC------CCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND------RPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
...+-.+...+.+.|++++|+..++++++..+.. ...++..++.+|.+.|++++|...+++..+.+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3445568889999999999999999998754332 13468899999999999999999999998754
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.60 E-value=0.029 Score=39.25 Aligned_cols=140 Identities=11% Similarity=0.054 Sum_probs=90.3
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 405 (499)
.-.|..++..+++.+.... .+..-|+-++.-....-+-+-..++++.+-.-+.+.|-. ....++.++...+
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n----- 83 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINN----- 83 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTT-----
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhc-----
Confidence 4457777777777776652 344555555555555556666666666665433333311 1122333333322
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
.+...+...+....++|+-+.-.++++.+.+.+..+ +.....++.+|.+.|...++.+++.+..+.|++
T Consensus 84 ----------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~-~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 84 ----------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVS-ASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ----------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ----------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 234455666777888888888888888877755444 788889999999999999999999999888875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.91 E-value=0.077 Score=38.50 Aligned_cols=48 Identities=19% Similarity=0.067 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 010837 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAA----AGKWDSVTELREKMKLRG 483 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 483 (499)
|.++|.++|++..+.+. +.....|...|.. ..+.++|.+.+++..+.|
T Consensus 74 d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 44555555555544432 2344444444443 234555555555554444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.84 E-value=0.059 Score=39.16 Aligned_cols=113 Identities=10% Similarity=-0.004 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 010837 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----AGSLEQ 404 (499)
Q Consensus 329 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~ 404 (499)
.|+++|.+.|++..+.|. + .....+ +.....+.++|.+++++.. +.| +...+..|...|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g~-~--~a~~~l--~~~~~~~~~~a~~~~~~aa-~~g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE-M--FGCLSL--VSNSQINKQKLFQYLSKAC-ELN---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC-T--THHHHH--HTCTTSCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCC-h--hhhhhh--ccccccCHHHHHHHHhhhh-ccc---chhhhhhHHHhhhhccccchhhHH
Confidence 368899999999988773 2 223333 3456678999999999987 434 34455556666654 567899
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCC
Q 010837 405 ALKFVLEMPEKPNSDVWAALLSSCRL----HDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 450 (499)
|.++|++..+.-+......|...|.. ..|.++|.+++++..+.|..
T Consensus 78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 99999998877777777778777765 56899999999999888754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.96 E-value=0.1 Score=36.74 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=38.8
Q ss_pred ChhHHHHHHHHHHhc---CCHHHHHHHHHhCCC-CC-C-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 385 KMEHYACMVDLLGRA---GSLEQALKFVLEMPE-KP-N-SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~-~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+..+--...-++.+. .+.++++.+|+++.. .| + ...+-.|.-+|.+.|++++|.+.++.+++..|..
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 333444444444443 344566666666554 22 2 2455556666777777777777777777777665
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.04 E-value=0.92 Score=31.60 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=95.1
Q ss_pred HHhcCChHHHHHHHHhcCC-CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQ-KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 372 (499)
+.-.|.+++..+++.+... .+..-||-+|.-....-+-+-..++++..-+. + | ....+++.....-
T Consensus 12 ~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--D----------ls~C~Nlk~vv~C 78 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSVVEC 78 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh-c--C----------chhhhcHHHHHHH
Confidence 4566889999998888765 45566777776666666666666666655331 1 1 1233444444444
Q ss_pred HHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 373 FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 373 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
+-.+- .+......-++.+..+|+-++-.++++.+.+ ++++.....+..+|.+.|+..++-+++.++-+.|..
T Consensus 79 ~~~~n------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 79 GVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 43332 2224456667778889999999999888554 688899999999999999999999999999888764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.58 E-value=1.3 Score=30.90 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHchHhcCCCC-C-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 365 LVDKGREIFESMERDYSMKP-K-MEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
+.++|+.+++++.+. .| + ...+..|.-+|.+.|++++|.+.++.+.+
T Consensus 53 d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 53 DERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 445556666555522 22 2 23344455555566666666666655554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.31 E-value=1.6 Score=28.69 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
+.-++.+-++.+......|++....+.+.||-+.+++..|.++++.++.+.|- +...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~--~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 34456666777777778888888888888888888888888888888766543 3445655554
|