Citrus Sinensis ID: 010853
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LSK8 | 688 | Pentatricopeptide repeat- | yes | no | 0.947 | 0.687 | 0.619 | 1e-177 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.905 | 0.605 | 0.293 | 2e-54 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.883 | 0.788 | 0.273 | 5e-53 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.945 | 0.749 | 0.274 | 5e-53 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.883 | 0.695 | 0.269 | 3e-52 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.887 | 0.715 | 0.290 | 5e-52 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.835 | 0.692 | 0.278 | 6e-52 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.779 | 0.650 | 0.296 | 2e-51 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.865 | 0.683 | 0.265 | 2e-51 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.899 | 0.615 | 0.290 | 2e-51 |
| >sp|Q9LSK8|PP240_ARATH Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana GN=At3g18020 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 622 bits (1603), Expect = e-177, Method: Compositional matrix adjust.
Identities = 295/476 (61%), Positives = 364/476 (76%), Gaps = 3/476 (0%)
Query: 16 FPPVASLTSALA---ITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 72
P V + T+ + E++VA+KVFDEMR CG+ PNSLT SVL+ G L+ RDVE
Sbjct: 194 LPDVVTFTTLIGGYCEIRELEVAHKVFDEMRVCGIRPNSLTLSVLIGGFLKMRDVETGRK 253
Query: 73 LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 132
LM +LWE MK E D S+ AAFANLVDS+CREGY N++F IAE+M +SVN EFA GHM
Sbjct: 254 LMKELWEYMKNETDTSMKAAAFANLVDSMCREGYFNDIFEIAENMSLCESVNVEFAYGHM 313
Query: 133 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 192
IDSLCR RNHGA+R+VY+M+ +GL P SYN+I+HGLCK GGCMRAYQLLEEG +F +
Sbjct: 314 IDSLCRYRRNHGAARIVYIMKSKGLKPRRTSYNAIIHGLCKDGGCMRAYQLLEEGSEFEF 373
Query: 193 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 252
PSE+TYK+L+E LC E D KAR VL+ ML K+ DRTRI NIYLR LC++ NPTE+LN
Sbjct: 374 FPSEYTYKLLMESLCKELDTGKARNVLELMLRKEGADRTRIYNIYLRGLCVMDNPTEILN 433
Query: 253 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312
VLV MLQ C+PD TLNTVING CKMGR+++A+KVL+DM+ GKFCAPDAVT T++ GL
Sbjct: 434 VLVSMLQGDCRPDEYTLNTVINGLCKMGRVDDAMKVLDDMMTGKFCAPDAVTLNTVMCGL 493
Query: 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 372
L GR +EAL++L +VMP+ PG+V YNAV+RGLF+L + +EA VF + V AD
Sbjct: 494 LAQGRAEEALDVLNRVMPENKIKPGVVAYNAVIRGLFKLHKGDEAMSVFGQLEKASVTAD 553
Query: 373 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 432
STTYAI+IDGLC +N++D AK+FWDD++WPS HD +VYAA +KGLC+SG + +A HFLY
Sbjct: 554 STTYAIIIDGLCVTNKVDMAKKFWDDVIWPSGRHDAFVYAAFLKGLCQSGYLSDACHFLY 613
Query: 433 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 488
+L DSG PN+VCYN VI + +KREAYQIL EMRKNG PDAVTWRILDKLH
Sbjct: 614 DLADSGAIPNVVCYNTVIAECSRSGLKREAYQILEEMRKNGQAPDAVTWRILDKLH 669
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/474 (29%), Positives = 236/474 (49%), Gaps = 22/474 (4%)
Query: 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 81
L G +DVA +FD+M G LPN +TY+ L+ G + R ++ FKL M
Sbjct: 211 LIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG----FKLLRSM 266
Query: 82 KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 141
+ L N ++ +++ LCREG + EV + +M + +E +I C+ G
Sbjct: 267 ALK-GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGN 325
Query: 142 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 201
H A + M + GLTPS+++Y S++H +CK G RA + L++ G P+E TY
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Query: 202 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 261
LV+G + + +A +VL+ M N + C+ + + VL M +
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 262 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 321
PDV++ +TV++GFC+ ++EAL+V +MV K PD +T++++I G R +EA
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE-KGIKPDTITYSSLIQGFCEQRRTKEA 504
Query: 322 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 381
+L Y+ M + G P TY A++ +E+A ++ N M+ GV+ D TY+++I+
Sbjct: 505 CDL-YEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLIN 563
Query: 382 GLCESNQLDEAKRFWDDIVWPSNIHDNYVY---------------AAMIKGLCRSGKIHE 426
GL + ++ EAKR + + ++ + Y ++IKG C G + E
Sbjct: 564 GLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTE 623
Query: 427 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 480
A ++ P+ YN++I G C+ R+AY + +EM K+G VT
Sbjct: 624 ADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVT 677
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 209 bits (532), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 132/483 (27%), Positives = 235/483 (48%), Gaps = 42/483 (8%)
Query: 11 GFYSPFPPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 70
G+ ++SL + + A + D+M G P+++T++ L+ G+ A
Sbjct: 75 GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEA 134
Query: 71 NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 130
L+ ++ +R + N + +V+ LC+ G ++ F + M K +
Sbjct: 135 VALVDRMVQRGCQP-----NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 189
Query: 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 190
+IDSLC+ A + M +G+ P++V+Y+S++ LC +G A QLL + I+
Sbjct: 190 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 249
Query: 191 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 250
P+ T+ L++ E +A K+ M+ K+ +D
Sbjct: 250 KINPNLVTFNALIDAFVKEGKFVEAEKLHDDMI-KRSID--------------------- 287
Query: 251 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 310
PD+ T N++INGFC R+++A ++ MV+ K C PD T+ T+I
Sbjct: 288 -------------PDIFTYNSLINGFCMHDRLDKAKQMFEFMVS-KDCFPDLDTYNTLIK 333
Query: 311 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 370
G R+++ L ++ M RG VTY +++GLF + A++VF M+ GV
Sbjct: 334 GFCKSKRVEDGTEL-FREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 392
Query: 371 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 430
D TY+I++DGLC + +L++A +D + D Y+Y MI+G+C++GK+ +
Sbjct: 393 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 452
Query: 431 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 490
L GV PN+V YN +I G C + +EAY +L++M+++G PD+ T+ L + H
Sbjct: 453 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLR 512
Query: 491 RGN 493
G+
Sbjct: 513 DGD 515
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 142/517 (27%), Positives = 246/517 (47%), Gaps = 45/517 (8%)
Query: 15 PFPPV---ASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 71
PFP + + L SA+A + D+ + ++M++ G+ N TYS+L+ R + A
Sbjct: 77 PFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLAL 136
Query: 72 VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 131
++ K+ + E + +++N+ L++ C +++ + M + + F
Sbjct: 137 AVLAKMMKLGYEPDIVTLNS-----LLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNT 191
Query: 132 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 191
+I L R R A +V M +G P LV+Y +V+GLCK G A LL++ Q
Sbjct: 192 LIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGK 251
Query: 192 YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---LIKNPT 248
P Y +++ LC ++ A + M +K N +R LC + +
Sbjct: 252 IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 311
Query: 249 ELL----------NVLVF----------------------MLQTQCQPDVITLNTVINGF 276
LL NV+ F M++ PD+ T +++INGF
Sbjct: 312 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 371
Query: 277 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 336
C R++EA K + +++ K C P+ VT+ T+I G R+ E + L ++ M QRG
Sbjct: 372 CMHDRLDEA-KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL-FREMSQRGLVG 429
Query: 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 396
VTY ++ G F+ R + A+ VF M+ GV+ D TY+I++DGLC + +++ A +
Sbjct: 430 NTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVF 489
Query: 397 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 456
+ + D Y Y MI+G+C++GK+ + L GV PN+V Y ++ G C+
Sbjct: 490 EYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 549
Query: 457 SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 493
+K EA + REM++ G PD+ T+ L + H G+
Sbjct: 550 GLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGD 586
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/483 (26%), Positives = 234/483 (48%), Gaps = 42/483 (8%)
Query: 11 GFYSPFPPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 70
G+ ++SL + + A + D+M G P+++T++ L+ G+ A
Sbjct: 150 GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEA 209
Query: 71 NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 130
L+ ++ +R + N + +V+ LC+ G + + M K +
Sbjct: 210 VALVDRMVQRGCQP-----NLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFN 264
Query: 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 190
+IDSLC+ A + M +G+ P++V+Y+S++ LC +G A QLL + I+
Sbjct: 265 TIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 324
Query: 191 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 250
P+ T+ L++ E +A K+ M+ K+ +D
Sbjct: 325 KINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI-KRSID--------------------- 362
Query: 251 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 310
PD+ T N+++NGFC R+++A ++ MV+ K C PD VT+ T+I
Sbjct: 363 -------------PDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS-KDCFPDVVTYNTLIK 408
Query: 311 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 370
G R+++ L ++ M RG VTY +++GLF + A++VF M+ GV
Sbjct: 409 GFCKSKRVEDGTEL-FREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 467
Query: 371 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 430
D TY+I++DGLC + +L++A +D + D Y+Y MI+G+C++GK+ +
Sbjct: 468 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 527
Query: 431 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 490
L GV PN+V YN +I G C + +EAY +L++M+++G P++ T+ L + H
Sbjct: 528 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLR 587
Query: 491 RGN 493
G+
Sbjct: 588 DGD 590
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (523), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 231/458 (50%), Gaps = 15/458 (3%)
Query: 35 AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 94
A+ V G P+++T+S LV G V A L+ ++ E MK+ DL
Sbjct: 124 AFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE-MKQRPDL----VTV 178
Query: 95 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 154
+ L++ LC +G V+E + + M + +E G +++ LC+SG + A + M +
Sbjct: 179 STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE 238
Query: 155 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 214
R + S+V Y+ ++ LCK G A L E G TY L+ GLC + +
Sbjct: 239 RNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDD 298
Query: 215 ARKVLQFMLSKKD----VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 270
K+L+ M+ + V + + +++++ L++ EL N M+ PD IT N
Sbjct: 299 GAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLE-AKELYNE---MITRGIAPDTITYN 354
Query: 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 330
++I+GFCK + EA ++ D++ K C PD VT++ +I R+ + + L ++
Sbjct: 355 SLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI-S 412
Query: 331 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390
+G P +TYN ++ G + ++ AKE+F M+ GV TY I++DGLC++ +L+
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472
Query: 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 450
+A ++ + +Y +I G+C + K+ +A L D GV P++V YNV+I
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 532
Query: 451 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 488
G CK EA + R+M+++G PD T+ IL + H
Sbjct: 533 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 570
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 128/459 (27%), Positives = 236/459 (51%), Gaps = 42/459 (9%)
Query: 35 AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 94
AY V ++ G P++ T++ L++G+ V A VL+ ++ E + + ++ N+
Sbjct: 142 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNS--- 198
Query: 95 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 154
+V+ +CR G + + M + + F +IDSLCR G A + M
Sbjct: 199 --IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMET 256
Query: 155 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 214
+G+ S+V+YNS+V GLCK G LL++ + +P+ T+ VL++ E L++
Sbjct: 257 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQE 316
Query: 215 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 274
A ++ + M+++ P++IT NT+++
Sbjct: 317 ANELYKEMITR-----------------------------------GISPNIITYNTLMD 341
Query: 275 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 334
G+C R+ EA +L+ MV K C+PD VTFT++I G V R+ + + + ++ + +RG
Sbjct: 342 GYCMQNRLSEANNMLDLMVRNK-CSPDIVTFTSLIKGYCMVKRVDDGMKV-FRNISKRGL 399
Query: 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 394
VTY+ +++G + +++ A+E+F M+ GV+ D TY I++DGLC++ +L++A
Sbjct: 400 VANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALE 459
Query: 395 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 454
++D+ +Y +I+G+C+ GK+ +A + L GV PN++ Y V+I G C
Sbjct: 460 IFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLC 519
Query: 455 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 493
K EA +LR+M ++G P+ T+ L + H G+
Sbjct: 520 KKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGD 558
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/401 (29%), Positives = 201/401 (50%), Gaps = 12/401 (2%)
Query: 91 NAAFA-------NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 143
N++FA N + + R G + E F+ E+M +V + C +I CR G+
Sbjct: 95 NSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTR 154
Query: 144 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 203
A++++ ++ G P +++YN ++ G CK G A +L+ + P TY ++
Sbjct: 155 KAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLD---RMSVSPDVVTYNTIL 211
Query: 204 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 263
LC L++A +VL ML + I + A C + +L M C
Sbjct: 212 RSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCT 271
Query: 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 323
PDV+T N ++NG CK GR++EA+K LNDM + C P+ +T I+ + + GR +A
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG-CQPNVITHNIILRSMCSTGRWMDAEK 330
Query: 324 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 383
LL ++ ++G+SP +VT+N ++ L R + A ++ M G +S +Y ++ G
Sbjct: 331 LLADML-RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGF 389
Query: 384 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 443
C+ ++D A + + +V D Y M+ LC+ GK+ +AV L +L G +P +
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449
Query: 444 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484
+ YN VIDG K +A ++L EMR L PD +T+ L
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSL 490
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/474 (26%), Positives = 235/474 (49%), Gaps = 42/474 (8%)
Query: 11 GFYSPFPPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERA 70
G+ ++SL + + + A + D+M G P++ T++ L+ G+ A
Sbjct: 148 GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEA 207
Query: 71 NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 130
L+ ++ +R + DL + +V+ LC+ G ++ + + M +GK +
Sbjct: 208 VALVDQMVQR-GCQPDL----VTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 262
Query: 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 190
+ID LC+ A + M +G+ P + +Y+S++ LC +G A +LL + I+
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322
Query: 191 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 250
P+ T+ L++ E L +A K+ M+ K+ +D
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI-KRSID--------------------- 360
Query: 251 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 310
PD+ T +++INGFC R++EA K + +++ K C P+ VT++T+I
Sbjct: 361 -------------PDIFTYSSLINGFCMHDRLDEA-KHMFELMISKDCFPNVVTYSTLIK 406
Query: 311 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 370
G R++E + L ++ M QRG VTY ++ G F+ R + A+ VF M+ +GV
Sbjct: 407 GFCKAKRVEEGMEL-FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVH 465
Query: 371 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 430
+ TY I++DGLC++ +L +A ++ + + D Y Y MI+G+C++GK+ +
Sbjct: 466 PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWEL 525
Query: 431 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484
L GV+PN++ YN +I G C+ K EA +L++M+++G P++ T+ L
Sbjct: 526 FCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTL 579
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 226/461 (49%), Gaps = 12/461 (2%)
Query: 25 ALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 84
A E+D A + +M G +PNS+ Y L+ + + V A +L E M
Sbjct: 226 AFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEA----LQLLEEMFLM 281
Query: 85 EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 144
+ + F +++ LC+ +NE ++ M ++ G++++ LC+ GR
Sbjct: 282 GCVP-DAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDA 340
Query: 145 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI-QFGYLPSEHTYKVLV 203
A + Y + K P +V +N+++HG HG A +L + + +G +P TY L+
Sbjct: 341 AKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 396
Query: 204 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 263
G E + A +VL M +K I + C + E NVL M +
Sbjct: 397 YGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLK 456
Query: 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 323
P+ + N +I+ FCK RI EA+++ +M K C PD TF ++I GL V I+ AL
Sbjct: 457 PNTVGFNCLISAFCKEHRIPEAVEIFREM-PRKGCKPDVYTFNSLISGLCEVDEIKHALW 515
Query: 324 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 383
LL ++ + G VTYN ++ R ++EA+++ N M+ G D TY +I GL
Sbjct: 516 LLRDMISE-GVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGL 574
Query: 384 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 443
C + ++D+A+ ++ ++ + N +I GLCRSG + EAV F E+V G TP+I
Sbjct: 575 CRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDI 634
Query: 444 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484
V +N +I+G C+ + + R+++ G+ PD VT+ L
Sbjct: 635 VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTL 675
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | ||||||
| 255577348 | 678 | pentatricopeptide repeat-containing prot | 0.949 | 0.699 | 0.705 | 0.0 | |
| 297742922 | 912 | unnamed protein product [Vitis vinifera] | 0.853 | 0.467 | 0.723 | 0.0 | |
| 225441965 | 680 | PREDICTED: pentatricopeptide repeat-cont | 0.873 | 0.641 | 0.710 | 0.0 | |
| 224135537 | 668 | predicted protein [Populus trichocarpa] | 0.947 | 0.708 | 0.704 | 0.0 | |
| 147855454 | 959 | hypothetical protein VITISV_027500 [Viti | 0.905 | 0.471 | 0.710 | 0.0 | |
| 449497581 | 681 | PREDICTED: pentatricopeptide repeat-cont | 0.827 | 0.606 | 0.679 | 0.0 | |
| 449439559 | 646 | PREDICTED: pentatricopeptide repeat-cont | 0.829 | 0.640 | 0.678 | 0.0 | |
| 356566730 | 650 | PREDICTED: pentatricopeptide repeat-cont | 0.957 | 0.735 | 0.634 | 0.0 | |
| 297830438 | 689 | pentatricopeptide repeat-containing prot | 0.799 | 0.579 | 0.650 | 0.0 | |
| 357506233 | 737 | Pentatricopeptide repeat-containing prot | 0.947 | 0.641 | 0.630 | 1e-177 |
| >gi|255577348|ref|XP_002529554.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223530966|gb|EEF32823.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/478 (70%), Positives = 397/478 (83%), Gaps = 4/478 (0%)
Query: 17 PPVASLTSALA---ITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 73
P V + TS L GE+ AYK+FDEMR C V+PNSLTYSVL+RG+LR D E L
Sbjct: 198 PNVVTFTSLLTGYCRVGEVGNAYKLFDEMRECSVVPNSLTYSVLIRGLLRQGDFEHGREL 257
Query: 74 MFKLWERMKEEE-DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 132
M LWE MK+EE + SVN AAF N++DSLCREG++N+VF+IAEDMPQGKSVN+EFA HM
Sbjct: 258 MCNLWETMKDEEKNQSVNAAAFVNVIDSLCREGFLNDVFKIAEDMPQGKSVNQEFAYAHM 317
Query: 133 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY 192
IDSLCR+G+NHGASR+VY+M+K+GLTPSLVSYNSI+HGLCK GCMRAYQL EEGI+FGY
Sbjct: 318 IDSLCRAGKNHGASRIVYMMKKKGLTPSLVSYNSIIHGLCKERGCMRAYQLFEEGIEFGY 377
Query: 193 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 252
LPSE+TYKVLVE LC E DL+KAR++++ ML+K VDRTRI NIYLRALCL + TELLN
Sbjct: 378 LPSEYTYKVLVEALCQEMDLDKARRIVEAMLNKDGVDRTRIYNIYLRALCLTNSATELLN 437
Query: 253 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312
VLV MLQT+CQPDVITLNTV+NGFCKM RIEEAL +L DM GKFCAPDAVTFTTII GL
Sbjct: 438 VLVSMLQTECQPDVITLNTVVNGFCKMHRIEEALTILTDMTMGKFCAPDAVTFTTIIAGL 497
Query: 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 372
LN GR QEALNLLY+VM ++G SPG+ TYNAV+ GLF+L+ EEA F ML GV AD
Sbjct: 498 LNAGRSQEALNLLYKVMHEKGISPGVETYNAVIHGLFKLQLAEEAMRAFKRMLAAGVAAD 557
Query: 373 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 432
S TY ++IDGLCES +D+AK+ WDD++WPS IHD++VYA+++KGLCR+GK+ EA HFLY
Sbjct: 558 SKTYTLIIDGLCESGLIDKAKKLWDDVIWPSRIHDDFVYASILKGLCRAGKLDEACHFLY 617
Query: 433 ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 490
ELVDSGV+PNI+ YN+VID ACKL MKREAYQ++ EMRKNGL PDAVTWRILDKLH
Sbjct: 618 ELVDSGVSPNIISYNIVIDSACKLGMKREAYQVVTEMRKNGLTPDAVTWRILDKLHAT 675
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742922|emb|CBI35789.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/463 (72%), Positives = 399/463 (86%)
Query: 30 GEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV 89
GE A+K+FDEM GV+PNSLTYSVL++GVL RDVER LM KLW++M +E D SV
Sbjct: 449 GEETSAWKLFDEMLESGVVPNSLTYSVLLKGVLCKRDVERGRELMCKLWQKMMDENDPSV 508
Query: 90 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 149
NNAAFANL+DSLC+EG+ EVFRIAEDMPQGKSV+EEF G MIDSLCR GRNHGASR+V
Sbjct: 509 NNAAFANLIDSLCKEGFFLEVFRIAEDMPQGKSVSEEFVYGQMIDSLCRCGRNHGASRIV 568
Query: 150 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 209
Y+MRKRG PSLVSYN IVHGL K GGCMRAYQLL+EG++FGY+ SEHTYKVL+E LC +
Sbjct: 569 YIMRKRGFFPSLVSYNYIVHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEALCRD 628
Query: 210 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 269
+DL KAR+V+Q ML+K+ VD+TRI NIYLRALCL+ NPTELLNVLVFMLQTQCQPDVITL
Sbjct: 629 ADLCKAREVMQLMLNKEGVDQTRIYNIYLRALCLMNNPTELLNVLVFMLQTQCQPDVITL 688
Query: 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 329
NTVINGFCKMGR+EEALKVL+DMV GKFCAPD+VT+TTII GLLN+GR +EAL++L +VM
Sbjct: 689 NTVINGFCKMGRVEEALKVLDDMVMGKFCAPDSVTYTTIICGLLNLGRTEEALDVLRRVM 748
Query: 330 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 389
P++G+ PG+VT+NAVL GLF+L++ A EVFN M+ GV A++ TY I+IDGL ES+Q+
Sbjct: 749 PEKGFKPGVVTFNAVLHGLFKLQQANVATEVFNSMVSDGVAANTITYTIIIDGLFESDQI 808
Query: 390 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 449
DEAKRFWDD++WPS +HDN+VYAA++KGLCRSGK++EA FLYELVD GVT N+V YN++
Sbjct: 809 DEAKRFWDDVIWPSKVHDNFVYAAILKGLCRSGKLNEACDFLYELVDCGVTLNVVNYNIL 868
Query: 450 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 492
ID ACKL KREAY I++EM+KNGL PDAVTWRIL KLHGN G
Sbjct: 869 IDHACKLGSKREAYTIVQEMKKNGLTPDAVTWRILHKLHGNVG 911
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441965|ref|XP_002271048.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18020-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/473 (71%), Positives = 401/473 (84%)
Query: 20 ASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 79
+L GE A+K+FDEM GV+PNSLTYSVL++GVL RDVER LM KLW+
Sbjct: 207 TTLIDGYCKIGEETSAWKLFDEMLESGVVPNSLTYSVLLKGVLCKRDVERGRELMCKLWQ 266
Query: 80 RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 139
+M +E D SVNNAAFANL+DSLC+EG+ EVFRIAEDMPQGKSV+EEF G MIDSLCR
Sbjct: 267 KMMDENDPSVNNAAFANLIDSLCKEGFFLEVFRIAEDMPQGKSVSEEFVYGQMIDSLCRC 326
Query: 140 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 199
GRNHGASR+VY+MRKRG PSLVSYN IVHGL K GGCMRAYQLL+EG++FGY+ SEHTY
Sbjct: 327 GRNHGASRIVYIMRKRGFFPSLVSYNYIVHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTY 386
Query: 200 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 259
KVL+E LC ++DL KAR+V+Q ML+K+ VD+TRI NIYLRALCL+ NPTELLNVLVFMLQ
Sbjct: 387 KVLLEALCRDADLCKAREVMQLMLNKEGVDQTRIYNIYLRALCLMNNPTELLNVLVFMLQ 446
Query: 260 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 319
TQCQPDVITLNTVINGFCKMGR+EEALKVL+DMV GKFCAPD+VT+TTII GLLN+GR +
Sbjct: 447 TQCQPDVITLNTVINGFCKMGRVEEALKVLDDMVMGKFCAPDSVTYTTIICGLLNLGRTE 506
Query: 320 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 379
EAL++L +VMP++G+ PG+VT+NAVL GLF+L++ A EVFN M+ GV A++ TY I+
Sbjct: 507 EALDVLRRVMPEKGFKPGVVTFNAVLHGLFKLQQANVATEVFNSMVSDGVAANTITYTII 566
Query: 380 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 439
IDGL ES+Q+DEAKRFWDD++WPS +HDN+VYAA++KGLCRSGK++EA FLYELVD GV
Sbjct: 567 IDGLFESDQIDEAKRFWDDVIWPSKVHDNFVYAAILKGLCRSGKLNEACDFLYELVDCGV 626
Query: 440 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 492
T N+V YN++ID ACKL KREAY I++EM+KNGL PDAVTWRIL KLHGN G
Sbjct: 627 TLNVVNYNILIDHACKLGSKREAYTIVQEMKKNGLTPDAVTWRILHKLHGNVG 679
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135537|ref|XP_002322098.1| predicted protein [Populus trichocarpa] gi|222869094|gb|EEF06225.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/474 (70%), Positives = 397/474 (83%), Gaps = 1/474 (0%)
Query: 20 ASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 79
+L + + GE+ AYK+FDEM GV+PNSL+YS+L+RGVLR RD+ER LM L++
Sbjct: 196 TTLVNGYSKIGEISDAYKLFDEMPEWGVVPNSLSYSLLIRGVLRKRDIERGRELMHVLFQ 255
Query: 80 RMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS 139
RM+ EED SVN+AAF NLVD LCREG NEVF IAE+MPQG VNE+FA GH+IDSLC+
Sbjct: 256 RMRHEEDQSVNSAAFDNLVDCLCREGLFNEVFMIAEEMPQGNRVNEDFAYGHLIDSLCKV 315
Query: 140 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 199
GR+HGASRVVY+MRK+G TPS+VSYNSI+HGLCK GGCMRAYQLLEEG+ FGYL SE+TY
Sbjct: 316 GRSHGASRVVYIMRKKGFTPSVVSYNSIIHGLCKEGGCMRAYQLLEEGVGFGYLLSEYTY 375
Query: 200 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 259
KVLVE LC DL+KAR+VL+ ML+K +DRTRI NIYLRALCL+ NPTELLNVLV MLQ
Sbjct: 376 KVLVEALCQAMDLDKAREVLKVMLNKGGMDRTRIYNIYLRALCLMNNPTELLNVLVSMLQ 435
Query: 260 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 319
T CQPDVITLNTVINGFCKMGR+EEALKVLNDM+ GKF APDAVTFT+II GLLNVGR Q
Sbjct: 436 TNCQPDVITLNTVINGFCKMGRVEEALKVLNDMMTGKFSAPDAVTFTSIISGLLNVGRSQ 495
Query: 320 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 379
EA NLL Q M ++G +PG+VTYNA+LRGLF+L+ +EA VF+ M+ GV A+S TY+I+
Sbjct: 496 EARNLLLQ-MLEKGITPGVVTYNAILRGLFKLQLTKEAMAVFDEMITDGVAANSQTYSII 554
Query: 380 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 439
++GLCES Q+D AK+FWD+++WPS IHD++VYAA++KGLCRSG ++EA+HFLYELVDSGV
Sbjct: 555 VEGLCESGQIDGAKKFWDEVIWPSKIHDDFVYAAILKGLCRSGHLNEAIHFLYELVDSGV 614
Query: 440 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 493
PNIV YN+VID AC L MKREAYQI EM+KNGL PDAVTWR LDKLHG N
Sbjct: 615 NPNIVSYNIVIDRACSLGMKREAYQIAGEMQKNGLTPDAVTWRTLDKLHGQVKN 668
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147855454|emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/463 (71%), Positives = 389/463 (84%), Gaps = 11/463 (2%)
Query: 30 GEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV 89
GE A+K+FDEM GV+PNSLTYSVL++GVL RDVER LM KLW++M +E D SV
Sbjct: 507 GEETSAWKLFDEMLESGVVPNSLTYSVLLKGVLCKRDVERGRELMCKLWQKMMDENDPSV 566
Query: 90 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 149
NNAAFANL+DSLC+EG+ EVFRIAEDMPQGKSV+EEFA G MIDSLCR GRNHGASR+V
Sbjct: 567 NNAAFANLIDSLCKEGFFLEVFRIAEDMPQGKSVSEEFAYGQMIDSLCRCGRNHGASRIV 626
Query: 150 YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 209
Y+MRKRG PSLVSYN IVHGL K GGCMRAYQLL+EG++FGY+ SEHTYKVL+E LC +
Sbjct: 627 YIMRKRGFFPSLVSYNYIVHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEALCRD 686
Query: 210 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 269
+DL KAR+V+Q ML+K+ VD+TRI NIYLRALCL+ NPTELLNVLVFMLQTQCQPDVITL
Sbjct: 687 ADLCKAREVMQLMLNKEGVDQTRIYNIYLRALCLMNNPTELLNVLVFMLQTQCQPDVITL 746
Query: 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 329
NTVINGFCKMGR+EEALKVL+DMV GKFCAPD+VT+TTII GLLN+GR EAL++L +VM
Sbjct: 747 NTVINGFCKMGRVEEALKVLDDMVMGKFCAPDSVTYTTIICGLLNLGRTAEALDVLRRVM 806
Query: 330 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 389
P++ VL GLF+L++ A EVFN M+ GV A++ TY I+IDGL ES+Q+
Sbjct: 807 PEK-----------VLHGLFKLQQANVATEVFNSMVSDGVAANTITYTIIIDGLFESDQI 855
Query: 390 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 449
DEAKRFWDD++WPS +HDN+VYAA++KGLCRSGK++EA FLYELVD GVT N+V YN++
Sbjct: 856 DEAKRFWDDVIWPSKVHDNFVYAAILKGLCRSGKLNEACDFLYELVDCGVTLNVVNYNIL 915
Query: 450 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 492
ID ACKL KREAY I++EM+KNGL PDAVTWRIL KLHGN G
Sbjct: 916 IDHACKLGSKREAYTIVQEMKKNGLTPDAVTWRILHKLHGNVG 958
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449497581|ref|XP_004160441.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18020-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/462 (67%), Positives = 375/462 (81%)
Query: 32 MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 91
+ A K+FDEM V PNSLTYSVL+ G L RD E L+ LWERMK E D SVNN
Sbjct: 212 VSAAEKLFDEMPGNYVEPNSLTYSVLINGFLYKRDFETGKALICNLWERMKGELDSSVNN 271
Query: 92 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 151
AAFA+LVDSLC G +EVF IAEDMPQG+SV EEFA G MIDSLC++ R HGASR+VY+
Sbjct: 272 AAFAHLVDSLCLVGSFHEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYI 331
Query: 152 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 211
MRK+GL P L+SYNSI+HGL K GGCMRAYQLL EG++FGY PSEHTYKVL+EGLC E D
Sbjct: 332 MRKKGLNPGLLSYNSIIHGLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELD 391
Query: 212 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 271
+KA++VLQ M+ K+ VDRTRI NIYLRA+CL N TELLN LV MLQT CQPDVITLNT
Sbjct: 392 TQKAKEVLQIMIHKQGVDRTRIYNIYLRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNT 451
Query: 272 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 331
VI GFCK+G IEEALKVLNDM+ GKFC PD VTFTTIIFGLLNVGRI+E+L++LY+VMP+
Sbjct: 452 VIKGFCKVGSIEEALKVLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPE 511
Query: 332 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 391
+G PG++TYNA +RGLF+L++ +A F+ M+ G+ ADSTTYA+VIDGLC+ NQ++E
Sbjct: 512 KGIVPGVITYNATIRGLFKLQQANQAMNTFDRMVRNGIQADSTTYAVVIDGLCDCNQIEE 571
Query: 392 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451
KRFW DIVWPS IHD++VY+A++KGLC S K +EA HFLYEL DSGV+P I CYN+VI+
Sbjct: 572 VKRFWKDIVWPSKIHDSFVYSAILKGLCHSSKFNEACHFLYELSDSGVSPTIFCYNIVIN 631
Query: 452 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 493
ACKL +K EAY++++EMRKNGL PDAVTWRIL KLH N +
Sbjct: 632 TACKLGLKGEAYRLVKEMRKNGLAPDAVTWRILHKLHQNETD 673
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439559|ref|XP_004137553.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18020-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/463 (67%), Positives = 376/463 (81%)
Query: 32 MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 91
+ A K+FDEM V PNSLTYSVL+ G L RD E L+ LWERMK E D SVNN
Sbjct: 179 VSAAEKLFDEMPGNYVEPNSLTYSVLINGFLYKRDFETGKALICNLWERMKGELDSSVNN 238
Query: 92 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 151
AAFA+LVDSLC G +EVF IAEDMPQG+SV EEFA G MIDSLC++ R HGASR+VY+
Sbjct: 239 AAFAHLVDSLCLVGSFHEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYI 298
Query: 152 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 211
MRK+GL P L+SYNSI+HGL K GGCMRAYQLL EG++FGY PSEHTYKVL+EGLC E D
Sbjct: 299 MRKKGLNPGLLSYNSIIHGLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELD 358
Query: 212 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT 271
+KA++VLQ M+ K+ VDRTRI NIYLRA+CL N TELLN LV MLQT CQPDVITLNT
Sbjct: 359 TQKAKEVLQIMIHKQGVDRTRIYNIYLRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNT 418
Query: 272 VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 331
VI GFCK+G IEEALKVLNDM+ GKFC PD VTFTTIIFGLLNVGRI+E+L++LY+VMP+
Sbjct: 419 VIKGFCKVGSIEEALKVLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPE 478
Query: 332 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 391
+G PG++TYNA +RGLF+L++ +A F+ M+ G+ ADSTTYA+VIDGLC+ NQ++E
Sbjct: 479 KGIVPGVITYNATIRGLFKLQQANQAMNTFDRMVRNGIQADSTTYAVVIDGLCDCNQIEE 538
Query: 392 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451
KRFW DIVWPS IHD++VY+A++KGLC S K +EA HFLYEL DSGV+P I CYN+VI+
Sbjct: 539 VKRFWKDIVWPSKIHDSFVYSAILKGLCHSSKFNEACHFLYELSDSGVSPTIFCYNIVIN 598
Query: 452 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 494
ACKL +K EAY++++EMRKNGL PDAVTWRIL KLH N ++
Sbjct: 599 TACKLGLKGEAYRLVKEMRKNGLAPDAVTWRILHKLHQNETDN 641
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566730|ref|XP_003551582.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18020-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/481 (63%), Positives = 381/481 (79%), Gaps = 3/481 (0%)
Query: 17 PPVASLTSAL---AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 73
P V S T+ + M A KVFDEM GV PNS+TYSVL+ GVLR RD+E L
Sbjct: 152 PNVVSFTTLINGYCSVRAMRDARKVFDEMLESGVEPNSVTYSVLIGGVLRERDLEGGREL 211
Query: 74 MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 133
M +LWERM E + SV AAFANLVDSLCREG+ EVFRIAE++P G +EE + G M+
Sbjct: 212 MCRLWERMSVEVEDSVKTAAFANLVDSLCREGFFGEVFRIAEELPFGSCFSEEVSYGQMV 271
Query: 134 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 193
DSLCR GR +GA+R+VY++RKRG PS VSYN ++HGL + G CMRAYQLLEEG +FG++
Sbjct: 272 DSLCRVGRYNGAARIVYLVRKRGFVPSDVSYNHVIHGLSRDGDCMRAYQLLEEGAEFGFM 331
Query: 194 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 253
SEHTYKVLVE LC D++KAR+VL+ ML K+ VD+TRI NIYLRALC + NPTELLNV
Sbjct: 332 LSEHTYKVLVEALCHVMDVDKAREVLKLMLRKEGVDKTRIYNIYLRALCFVNNPTELLNV 391
Query: 254 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313
LVFML++QCQ DVITLNTVINGFCKMGR++EA KVL+DM+AGKF APD VTFTT+I G+L
Sbjct: 392 LVFMLESQCQADVITLNTVINGFCKMGRVDEASKVLHDMLAGKFAAPDVVTFTTVISGML 451
Query: 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 373
+ R+ EAL+L ++VMP+ G P +VTYNA+LRGLF+L+RV +A FN M+ G+ ADS
Sbjct: 452 DAARVDEALDLFHKVMPENGLRPSVVTYNALLRGLFKLKRVSDALMAFNNMVSEGITADS 511
Query: 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 433
TTY +V++GLCES+Q++EAK FW +++WPS +HDN+VYAA++KGLC SGK++EA HFLYE
Sbjct: 512 TTYTVVVEGLCESDQVEEAKSFWHNVIWPSGVHDNFVYAAILKGLCHSGKLNEACHFLYE 571
Query: 434 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 493
LVDSG++PNI YN++I+ AC L +K EAYQI+REM+KNGL PD+VTWRILDKLHG
Sbjct: 572 LVDSGISPNIFSYNILINCACNLGLKIEAYQIVREMKKNGLTPDSVTWRILDKLHGKVRK 631
Query: 494 D 494
D
Sbjct: 632 D 632
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297830438|ref|XP_002883101.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328941|gb|EFH59360.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/458 (65%), Positives = 366/458 (79%)
Query: 31 EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN 90
E++VA+KVFDEMR CG+ PNSLT SVL+ G + RDVE LM +LWE MK+E D S+
Sbjct: 212 ELEVAHKVFDEMRGCGIRPNSLTMSVLIGGFFKMRDVETGRKLMKELWEYMKDEADTSMK 271
Query: 91 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 150
AAFANLVDS+CREGY N++F IAE+MPQ +SVN EF+ GHMIDSLCR RNHGA+R+VY
Sbjct: 272 TAAFANLVDSMCREGYFNDIFEIAENMPQCESVNVEFSYGHMIDSLCRYRRNHGAARIVY 331
Query: 151 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210
+M+ +GL P SYN+I+HGLCK GGCMRAYQLLEEG +FG+ PSE+TYK+LVE LC E
Sbjct: 332 IMKSKGLKPRRTSYNAIIHGLCKDGGCMRAYQLLEEGSEFGFFPSEYTYKLLVESLCREL 391
Query: 211 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 270
D K R VL+ ML K+ DRTRI NIYLRALC++ NPTE+LNVLV MLQ C PD TLN
Sbjct: 392 DTGKTRNVLELMLRKEGTDRTRIYNIYLRALCVMDNPTEILNVLVSMLQGDCSPDEYTLN 451
Query: 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 330
TV+NGFCKMGR+++A+KVL DM+ GKFCAPDAVT TT++ GLL+ GR +EAL++L +VMP
Sbjct: 452 TVVNGFCKMGRVDDAMKVLGDMMTGKFCAPDAVTLTTVMCGLLSQGRAEEALDVLNRVMP 511
Query: 331 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390
++ PG+VTYNAV+RGLF+L + +EA VF+ + V ADSTTYAI+IDGLC ++Q+D
Sbjct: 512 EKKIKPGVVTYNAVIRGLFKLNKGDEAMCVFDQLEKASVTADSTTYAIIIDGLCVTSQVD 571
Query: 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 450
AK+FWDD++WPS HD +VYAA +KGLCRSG + +A HFLY+L DSG PN+VCYN VI
Sbjct: 572 MAKKFWDDVIWPSGRHDVFVYAAFLKGLCRSGYLSDACHFLYDLADSGAIPNVVCYNTVI 631
Query: 451 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 488
D + +KREAYQIL EMRKNG PDAVTWRILDKLH
Sbjct: 632 DECSRSGLKREAYQILEEMRKNGQAPDAVTWRILDKLH 669
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357506233|ref|XP_003623405.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355498420|gb|AES79623.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 300/476 (63%), Positives = 367/476 (77%), Gaps = 3/476 (0%)
Query: 17 PPVASLTSAL---AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 73
P V S T+ + G + A KVFDEM G+ PNS+TYSVL+RG LR RD E L
Sbjct: 143 PNVVSYTTLINGYCSVGGIRDAMKVFDEMLESGLEPNSMTYSVLIRGFLRGRDFESGREL 202
Query: 74 MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 133
M KLWERMK E++LSVN AAFANL+DSLC+EG+ NEVF IAE MP G S+ E+ G MI
Sbjct: 203 MCKLWERMKMEDELSVNVAAFANLIDSLCKEGFFNEVFEIAELMPCGSSLPEQVVYGQMI 262
Query: 134 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL 193
DS C+ GR HGA+R+VY+MRKR PS VSYN I+HGL K G CMR YQLLEEG +FG+
Sbjct: 263 DSFCKVGRYHGAARIVYLMRKRRFVPSDVSYNHIIHGLSKDGDCMRGYQLLEEGAEFGFS 322
Query: 194 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 253
EHTYKVLVE LC D++KAR+VL+ ML K+ VD+TRI NIYLRALC + NPTELLNV
Sbjct: 323 LCEHTYKVLVEALCRVLDVDKAREVLKLMLYKEGVDKTRIYNIYLRALCHVNNPTELLNV 382
Query: 254 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313
LVFML++ CQ DVITLNTVINGFCKMGR +EALKVLNDM+ GKFCAPD VTFTT+I GLL
Sbjct: 383 LVFMLESHCQTDVITLNTVINGFCKMGRFDEALKVLNDMLLGKFCAPDVVTFTTLISGLL 442
Query: 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 373
+ ++ EAL+L +VMP+ G PG+VTYN ++R L++L+R +A EVFN M G G+ DS
Sbjct: 443 DAEKVDEALDLFNRVMPENGLKPGVVTYNVLIRCLYKLKRPNDAFEVFNNMAGDGITPDS 502
Query: 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 433
TTY ++++GLCE +Q++EAK FW ++WPS IHDN+VYAA++KGLC SGK +EA HFLYE
Sbjct: 503 TTYTVIVEGLCECDQIEEAKSFWQSVIWPSGIHDNFVYAAILKGLCSSGKFNEACHFLYE 562
Query: 434 LVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 489
LVDSG++PNI YN++I+ AC L +KRE YQI+REM KNG+ PD VTWRIL KL
Sbjct: 563 LVDSGISPNIYSYNILINCACNLGLKREVYQIVREMNKNGVAPDCVTWRILHKLQS 618
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 499 | ||||||
| TAIR|locus:2087664 | 688 | AT3G18020 "AT3G18020" [Arabido | 0.917 | 0.665 | 0.637 | 1.2e-161 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.917 | 0.613 | 0.311 | 7e-54 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.895 | 0.722 | 0.293 | 1e-52 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.907 | 0.600 | 0.281 | 1.5e-51 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.917 | 0.765 | 0.273 | 4e-51 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.899 | 0.615 | 0.290 | 8.3e-51 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.911 | 0.717 | 0.284 | 2e-49 | |
| TAIR|locus:2015218 | 590 | AT1G63070 [Arabidopsis thalian | 0.947 | 0.801 | 0.266 | 3.2e-49 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.907 | 0.711 | 0.280 | 5.2e-49 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.895 | 0.710 | 0.275 | 2.3e-48 |
| TAIR|locus:2087664 AT3G18020 "AT3G18020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1574 (559.1 bits), Expect = 1.2e-161, P = 1.2e-161
Identities = 292/458 (63%), Positives = 358/458 (78%)
Query: 31 EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN 90
E++VA+KVFDEMR CG+ PNSLT SVL+ G L+ RDVE LM +LWE MK E D S+
Sbjct: 212 ELEVAHKVFDEMRVCGIRPNSLTLSVLIGGFLKMRDVETGRKLMKELWEYMKNETDTSMK 271
Query: 91 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 150
AAFANLVDS+CREGY N++F IAE+M +SVN EFA GHMIDSLCR RNHGA+R+VY
Sbjct: 272 AAAFANLVDSMCREGYFNDIFEIAENMSLCESVNVEFAYGHMIDSLCRYRRNHGAARIVY 331
Query: 151 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210
+M+ +GL P SYN+I+HGLCK GGCMRAYQLLEEG +F + PSE+TYK+L+E LC E
Sbjct: 332 IMKSKGLKPRRTSYNAIIHGLCKDGGCMRAYQLLEEGSEFEFFPSEYTYKLLMESLCKEL 391
Query: 211 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 270
D KAR VL+ ML K+ DRTRI NIYLR LC++ NPTE+LNVLV MLQ C+PD TLN
Sbjct: 392 DTGKARNVLELMLRKEGADRTRIYNIYLRGLCVMDNPTEILNVLVSMLQGDCRPDEYTLN 451
Query: 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 330
TVING CKMGR+++A+KVL+DM+ GKFCAPDAVT T++ GLL GR +EAL++L +VMP
Sbjct: 452 TVINGLCKMGRVDDAMKVLDDMMTGKFCAPDAVTLNTVMCGLLAQGRAEEALDVLNRVMP 511
Query: 331 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390
+ PG+V YNAV+RGLF+L + +EA VF + V ADSTTYAI+IDGLC +N++D
Sbjct: 512 ENKIKPGVVAYNAVIRGLFKLHKGDEAMSVFGQLEKASVTADSTTYAIIIDGLCVTNKVD 571
Query: 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 450
AK+FWDD++WPS HD +VYAA +KGLC+SG + +A HFLY+L DSG PN+VCYN VI
Sbjct: 572 MAKKFWDDVIWPSGRHDAFVYAAFLKGLCQSGYLSDACHFLYDLADSGAIPNVVCYNTVI 631
Query: 451 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 488
+ +KREAYQIL EMRKNG PDAVTWRILDKLH
Sbjct: 632 AECSRSGLKREAYQILEEMRKNGQAPDAVTWRILDKLH 669
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 151/485 (31%), Positives = 249/485 (51%)
Query: 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 81
L G +DVA +FD+M G LPN +TY+ L+ G + R ++ FKL M
Sbjct: 211 LIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG----FKLLRSM 266
Query: 82 KEEEDLSVNNAAFANLVDSLCREGYVNEV-FRIAEDMPQGKSVNEEFACGHMIDSLCRSG 140
+ L N ++ +++ LCREG + EV F + E +G S+ +E +I C+ G
Sbjct: 267 ALK-GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL-DEVTYNTLIKGYCKEG 324
Query: 141 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK 200
H A + M + GLTPS+++Y S++H +CK G RA + L++ G P+E TY
Sbjct: 325 NFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYT 384
Query: 201 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 260
LV+G + + +A +VL+ M N + C+ + + VL M +
Sbjct: 385 TLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEK 444
Query: 261 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 320
PDV++ +TV++GFC+ ++EAL+V +MV K PD +T++++I G R +E
Sbjct: 445 GLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE-KGIKPDTITYSSLIQGFCEQRRTKE 503
Query: 321 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 380
A +L Y+ M + G P TY A++ +E+A ++ N M+ GV+ D TY+++I
Sbjct: 504 ACDL-YEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLI 562
Query: 381 DGLCESNQLDEAKR-----FWDDIVWPSNI--H------DNYVY---AAMIKGLCRSGKI 424
+GL + ++ EAKR F+++ V PS++ H N + ++IKG C G +
Sbjct: 563 NGLNKQSRTREAKRLLLKLFYEESV-PSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMM 621
Query: 425 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484
EA ++ P+ YN++I G C+ R+AY + +EM K+G VT L
Sbjct: 622 TEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIAL 681
Query: 485 DK-LH 488
K LH
Sbjct: 682 VKALH 686
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 136/463 (29%), Positives = 234/463 (50%)
Query: 35 AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 94
A+ V G P+++T+S LV G V A L+ ++ E MK+ DL
Sbjct: 124 AFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE-MKQRPDL----VTV 178
Query: 95 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 154
+ L++ LC +G V+E + + M + +E G +++ LC+SG + A + M +
Sbjct: 179 STLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE 238
Query: 155 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 214
R + S+V Y+ ++ LCK G A L E G TY L+ GLC + +
Sbjct: 239 RNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDD 298
Query: 215 ARKVLQFMLSKK---DVDR-TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 270
K+L+ M+ + DV + + +++++ L++ EL N M+ PD IT N
Sbjct: 299 GAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLE-AKELYNE---MITRGIAPDTITYN 354
Query: 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 330
++I+GFCK + EA ++ D++ K C PD VT++ +I R+ + + L ++
Sbjct: 355 SLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS- 412
Query: 331 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390
+G P +TYN ++ G + ++ AKE+F M+ GV TY I++DGLC++ +L+
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472
Query: 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 450
+A ++ + +Y +I G+C + K+ +A L D GV P++V YNV+I
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 532
Query: 451 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH-GNRG 492
G CK EA + R+M+++G PD T+ IL + H G G
Sbjct: 533 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSG 575
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 133/473 (28%), Positives = 235/473 (49%)
Query: 7 KPTTGFYSPFPPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 66
KP T FY+ + ++L + +++++ +M G+ P+ T++VL++ + R
Sbjct: 151 KPDTHFYNRMLNLLVDGNSLKL---VEISHA---KMSVWGIKPDVSTFNVLIKALCRAHQ 204
Query: 67 VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 126
+ A +LM E M L + F ++ EG ++ RI E M +
Sbjct: 205 LRPA-ILML---EDMPSY-GLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSN 259
Query: 127 FACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 185
+ ++ C+ GR A + M + G P ++N++V+GLCK G A ++++
Sbjct: 260 VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMD 319
Query: 186 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL-- 243
+Q GY P +TY ++ GLC ++++A +VL M+++ T N + LC
Sbjct: 320 VMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKEN 379
Query: 244 -IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 302
++ TEL VL PDV T N++I G C A+++ +M K C PD
Sbjct: 380 QVEEATELARVLT---SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEM-RSKGCEPDE 435
Query: 303 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 362
T+ +I L + G++ EALN+L Q M G + ++TYN ++ G + + EA+E+F+
Sbjct: 436 FTYNMLIDSLCSKGKLDEALNMLKQ-MELSGCARSVITYNTLIDGFCKANKTREAEEIFD 494
Query: 363 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422
M GV +S TY +IDGLC+S ++++A + D ++ D Y Y +++ CR G
Sbjct: 495 EMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGG 554
Query: 423 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 475
I +A + + +G P+IV Y +I G CK A ++LR ++ G+N
Sbjct: 555 DIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIN 607
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 129/472 (27%), Positives = 241/472 (51%)
Query: 18 PVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 77
P +L G+ A K+ + + G +P+ +TY+V++ G + ++ A +
Sbjct: 139 PCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNA----LSV 194
Query: 78 WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 137
+RM D+ N ++ SLC G + + + + M Q + +I++ C
Sbjct: 195 LDRMSVSPDVVTYNT----ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATC 250
Query: 138 R-SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 196
R SG H A +++ MR RG TP +V+YN +V+G+CK G A + L + G P+
Sbjct: 251 RDSGVGH-AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNV 309
Query: 197 HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 256
T+ +++ +C A K+L ML K NI + LC +++L
Sbjct: 310 ITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEK 369
Query: 257 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 316
M Q CQP+ ++ N +++GFCK +++ A++ L MV+ + C PD VT+ T++ L G
Sbjct: 370 MPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS-RGCYPDIVTYNTMLTALCKDG 428
Query: 317 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY 376
++++A+ +L Q + +G SP ++TYN V+ GL + + +A ++ + M + D+ TY
Sbjct: 429 KVEDAVEILNQ-LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 487
Query: 377 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELV 435
+ ++ GL ++DEA +F+ + I N V + +++ GLC+S + A+ FL ++
Sbjct: 488 SSLVGGLSREGKVDEAIKFFHEFE-RMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMI 546
Query: 436 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 487
+ G PN Y ++I+G M +EA ++L E+ GL + ++ K+
Sbjct: 547 NRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQVAGKM 598
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 134/461 (29%), Positives = 227/461 (49%)
Query: 25 ALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE 84
A E+D A + +M G +PNS+ Y L+ + + V A L+ +++ M
Sbjct: 226 AFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMF-LMGCV 284
Query: 85 EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG 144
D F +++ LC+ +NE ++ M ++ G++++ LC+ GR
Sbjct: 285 PDAET----FNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDA 340
Query: 145 ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI-QFGYLPSEHTYKVLV 203
A + Y + K P +V +N+++HG HG A +L + + +G +P TY L+
Sbjct: 341 AKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 396
Query: 204 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 263
G E + A +VL M +K I + C + E NVL M +
Sbjct: 397 YGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLK 456
Query: 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 323
P+ + N +I+ FCK RI EA+++ +M K C PD TF ++I GL V I+ AL
Sbjct: 457 PNTVGFNCLISAFCKEHRIPEAVEIFREMPR-KGCKPDVYTFNSLISGLCEVDEIKHALW 515
Query: 324 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 383
LL ++ + G VTYN ++ R ++EA+++ N M+ G D TY +I GL
Sbjct: 516 LLRDMISE-GVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGL 574
Query: 384 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 443
C + ++D+A+ ++ ++ + N +I GLCRSG + EAV F E+V G TP+I
Sbjct: 575 CRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDI 634
Query: 444 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484
V +N +I+G C+ + + R+++ G+ PD VT+ L
Sbjct: 635 VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTL 675
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 132/464 (28%), Positives = 226/464 (48%)
Query: 31 EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN 90
++ +A + +M G P+ +T S L+ G + + A L+ ++ E M D
Sbjct: 135 QISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE-MGYRPD---- 189
Query: 91 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 150
F L+ L +E + + M Q G +++ LC+ G A ++
Sbjct: 190 TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLN 249
Query: 151 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210
M + +V +N+I+ LCK+ A L +E G P+ TY L+ LC
Sbjct: 250 KMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYG 309
Query: 211 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 270
A ++L M+ KK N + A E + M++ PD+ T N
Sbjct: 310 RWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYN 369
Query: 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 330
+++NGFC R+++A ++ MV+ K C PD VT+ T+I G R+++ L ++ M
Sbjct: 370 SLVNGFCMHDRLDKAKQMFEFMVS-KDCFPDVVTYNTLIKGFCKSKRVEDGTEL-FREMS 427
Query: 331 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390
RG VTY +++GLF + A++VF M+ GV D TY+I++DGLC + +L+
Sbjct: 428 HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 487
Query: 391 EAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 449
+A +D + S I D Y+Y MI+G+C++GK+ + L GV PN+V YN +
Sbjct: 488 KALEVFD-YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTM 546
Query: 450 IDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 493
I G C + +EAY +L++M+++G P++ T+ L + H G+
Sbjct: 547 ISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590
|
|
| TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 129/484 (26%), Positives = 236/484 (48%)
Query: 15 PFPPV---ASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 71
PFP + + L SA+A + D+ + ++M++ G+ N TYS+ + R + A
Sbjct: 71 PFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLAL 130
Query: 72 VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 131
++ K+ MK S+ +L++ C ++E + + M + +
Sbjct: 131 AILGKM---MKLGYGPSI--VTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTT 185
Query: 132 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG 191
++ L + + A +V M +G P LV+Y ++++GLCK G A LL + ++ G
Sbjct: 186 LVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK-MEKG 244
Query: 192 YLPSEHT-YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 250
+ ++ Y +++GLC ++ A + M +K N + LC ++
Sbjct: 245 KIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDA 304
Query: 251 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 310
+L ML+ PD++ N +I+ F K G++ EA K+ ++MV K C PD V + T+I
Sbjct: 305 SRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIK 364
Query: 311 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 370
G R++E + + ++ M QRG VTY ++ G F+ R + A+ VF M+ GV
Sbjct: 365 GFCKYKRVEEGMEV-FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 423
Query: 371 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 430
D TY I++DGLC + ++ A ++ + D Y MI+ LC++GK+ +
Sbjct: 424 PDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDL 483
Query: 431 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 490
L GV PN+V Y ++ G C+ +K EA + EM+++G P++ T+ L +
Sbjct: 484 FCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLR 543
Query: 491 RGND 494
G++
Sbjct: 544 DGDE 547
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 129/460 (28%), Positives = 222/460 (48%)
Query: 34 VAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 93
+A+ ++ G PN++T+S L+ G+ V A L+ ++ E M + DL N
Sbjct: 141 LAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVE-MGHKPDLITINT- 198
Query: 94 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 153
LV+ LC G E + + M + G +++ +C+SG+ A ++ M
Sbjct: 199 ---LVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKME 255
Query: 154 KRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLE 213
+R + V Y+ I+ GLCKHG A+ L E G + TY +L+ G C +
Sbjct: 256 ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWD 315
Query: 214 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 273
K+L+ M+ +K ++ + + E + M+ PD IT ++I
Sbjct: 316 DGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLI 375
Query: 274 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 333
+GFCK +++A +++ D++ K C P+ TF +I G RI + L L ++ M RG
Sbjct: 376 DGFCKENHLDKANQMV-DLMVSKGCDPNIRTFNILINGYCKANRIDDGLEL-FRKMSLRG 433
Query: 334 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 393
VTYN +++G L ++ AKE+F M+ V + TY I++DGLC++ + ++A
Sbjct: 434 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 493
Query: 394 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453
++ I D +Y +I G+C + K+ +A L GV P + YN++I G
Sbjct: 494 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGL 553
Query: 454 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 493
CK EA + R+M ++G PD T+ IL + H G+
Sbjct: 554 CKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGD 593
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 125/454 (27%), Positives = 222/454 (48%)
Query: 31 EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN 90
++ +A V +M G P+ +T S L+ G + + A L+ +++ + E + N
Sbjct: 130 QLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF--VMEYQP---N 184
Query: 91 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVY 150
F L+ L +E + + M + F G +++ LC+ G A ++
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 244
Query: 151 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210
M K + +V Y +I+ LC + A L E G P+ TY L+ LC
Sbjct: 245 KMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 304
Query: 211 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN 270
A ++L M+ +K + + A E + M++ PD+ T +
Sbjct: 305 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 364
Query: 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 330
++INGFC R++EA K + +++ K C P+ VT+ T+I G R++E + L ++ M
Sbjct: 365 SLINGFCMHDRLDEA-KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL-FREMS 422
Query: 331 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390
QRG VTYN +++GLF+ + A+++F M+ GV D TY+I++DGLC+ +L+
Sbjct: 423 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 482
Query: 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 450
+A ++ + D Y Y MI+G+C++GK+ + L GV PN++ Y +I
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 542
Query: 451 DGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484
G C+ +K EA + REM+++G P++ T+ L
Sbjct: 543 SGFCRKGLKEEADALFREMKEDGTLPNSGTYNTL 576
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LSK8 | PP240_ARATH | No assigned EC number | 0.6197 | 0.9478 | 0.6875 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 499 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 8e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 5e-18
Identities = 88/426 (20%), Positives = 168/426 (39%), Gaps = 62/426 (14%)
Query: 76 KLWERMKEEEDLS---VNNAAFANLVDSLCR-EGYVNEVFRIAEDMPQGKSVNEEFACGH 131
L E M++ L + +A F C+ + V E FR A+ + N + +
Sbjct: 391 DLLEDMEKRGLLDMDKIYHAKFFKA----CKKQRAVKEAFRFAKLIR-----NPTLSTFN 441
Query: 132 MIDSLCRSGRN-HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 190
M+ S+C S ++ GA RV+ ++++ GL Y +++ K G +++ E +
Sbjct: 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA 501
Query: 191 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTE 249
G + HT+ L++G + KA M SK DR + N + A
Sbjct: 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV-VFNALISACGQSGAVDR 560
Query: 250 LLNVLVFML--QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM-------------VA 294
+VL M PD IT+ ++ G+++ A +V + +A
Sbjct: 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620
Query: 295 GKFC---------------------APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 333
C PD V F+ ++ + G + +A +L Q ++G
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL-QDARKQG 679
Query: 334 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 393
G V+Y++++ + ++A E++ + I + +T +I LCE NQL +A
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739
Query: 394 RFWDDI----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 449
++ + P+ I Y+ ++ R + L + + G+ PN+V +
Sbjct: 740 EVLSEMKRLGLCPNTI----TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795
Query: 450 IDGACK 455
G C
Sbjct: 796 T-GLCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 3e-14
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312
PDV+T NT+I+G+CK G++EEALK+ N+M P+ T++ +I GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 1e-13
Identities = 86/356 (24%), Positives = 158/356 (44%), Gaps = 22/356 (6%)
Query: 21 SLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWER 80
+L S A +G++D ++VF EM + GV N T+ L+ G R V +A F +
Sbjct: 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA----FGAYGI 532
Query: 81 M---KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM-PQGKSVN-EEFACGHMIDS 135
M + D V NA L+ + + G V+ F + +M + ++ + G ++ +
Sbjct: 533 MRSKNVKPDRVVFNA----LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588
Query: 136 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 195
+G+ A V ++ + + + Y V+ + G A + ++ + G P
Sbjct: 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 196 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 255
E + LV+ DL+KA ++LQ + T + + A KN + L +
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708
Query: 256 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 315
+ + +P V T+N +I C+ ++ +AL+VL++M C P+ +T++ ++
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC-PNTITYSILLVASERK 767
Query: 316 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 371
L+LL Q + G P +V + GL LRR E+A C LG VV+
Sbjct: 768 DDADVGLDLLSQAK-EDGIKPNLVMCRCIT-GLC-LRRFEKA-----CALGEPVVS 815
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 1e-12
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 336 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 384
P +VTYN ++ G + +VEEA ++FN M G+ + TY+I+IDGLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 5e-12
Identities = 78/356 (21%), Positives = 152/356 (42%), Gaps = 27/356 (7%)
Query: 144 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP--SEHTYKV 201
V + + G P N ++ K G + A +L +E +P + ++
Sbjct: 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE------MPERNLASWGT 194
Query: 202 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 261
++ GL + +A + + M R + LRA + + + +L+T
Sbjct: 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254
Query: 262 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA--VTFTTIIFGLLNVGRIQ 319
D +I+ + K G IE+A V + M P+ V + +++ G G +
Sbjct: 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGM-------PEKTTVAWNSMLAGYALHGYSE 307
Query: 320 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 379
EAL L Y+ M G S T++ ++R RL +E AK+ ++ G D +
Sbjct: 308 EALCLYYE-MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 380 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSG 438
+D + ++++A+ +D + P N + + A+I G G+ +AV ++ G
Sbjct: 367 VDLYSKWGRMEDARNVFDRM--P---RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 439 VTPNIVCYNVVIDGACKLS-MKREAYQILREMRKN-GLNPDAVTWRILDKLHGNRG 492
V PN V + V+ AC+ S + + ++I + M +N + P A+ + + +L G G
Sbjct: 422 VAPNHVTFLAVLS-ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 55/238 (23%), Positives = 110/238 (46%), Gaps = 14/238 (5%)
Query: 244 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD-- 301
+K+ + V + + +PD +N V+ K G + +A ++ ++M P+
Sbjct: 136 LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM-------PERN 188
Query: 302 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 361
++ TII GL++ G +EA L ++ M + G T+ +LR L +++
Sbjct: 189 LASWGTIIGGLVDAGNYREAFAL-FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247
Query: 362 NCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 421
C+L GVV D+ +ID + +++A+ +D + + + N +M+ G
Sbjct: 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWN----SMLAGYALH 303
Query: 422 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 479
G EA+ YE+ DSGV+ + ++++I +L++ A Q + + G D V
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 2e-11
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 441 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484
P++V YN +IDG CK EA ++ EM+K G+ P+ T+ IL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 56.2 bits (137), Expect = 9e-11
Identities = 15/32 (46%), Positives = 27/32 (84%)
Query: 262 CQPDVITLNTVINGFCKMGRIEEALKVLNDMV 293
+PDV+T NT+I+G C+ GR++EA+++L++M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 2e-10
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 300 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 348
PD VT+ T+I G G+++EAL L+ M +RG P + TY+ ++ GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALK-LFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 76/344 (22%), Positives = 132/344 (38%), Gaps = 68/344 (19%)
Query: 128 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 187
CG +ID A R+ M +R +L S+ +I+ GL G A+ L E
Sbjct: 170 KCGMLID----------ARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREM 215
Query: 188 IQFGYLPSEHTYKVLVE---------------------GLCGES--------------DL 212
+ G T+ V++ G+ G++ D+
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275
Query: 213 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 272
E AR V M K V N L L E L + M + D T + +
Sbjct: 276 EDARCVFDGMPEKTTVA----WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
Query: 273 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332
I F ++ +E A + ++ F D V T ++ GR+++A N+ + MP++
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNV-FDRMPRK 389
Query: 333 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEA 392
++++NA++ G R +A E+F M+ GV + T+ V+ S ++
Sbjct: 390 N----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 393 KRFWDDI-----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 431
+ + + P +H YA MI+ L R G + EA +
Sbjct: 446 WEIFQSMSENHRIKPRAMH----YACMIELLGREGLLDEAYAMI 485
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-09
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 407 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455
D Y +I G C+ GK+ EA+ E+ G+ PN+ Y+++IDG CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 4e-09
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 159 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 207
P +V+YN+++ G CK G A +L E + G P+ +TY +L++GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 3e-08
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 127 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 173
+ID C+ G+ A ++ M+KRG+ P++ +Y+ ++ GLCK
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 88/375 (23%), Positives = 143/375 (38%), Gaps = 67/375 (17%)
Query: 153 RKRGL------TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 206
R RGL + S NS + LC HG +A +LLE + E Y L L
Sbjct: 37 RSRGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-L 95
Query: 207 C-GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD 265
C + +E+ +V LS R+ N L V M + D
Sbjct: 96 CEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----D 151
Query: 266 VITLNTVINGFCKMGRIEEALKVLNDMV-AGKFCAPDAVTFTTIIF---GLLNVGRIQE- 320
+ + N ++ G+ K G +EAL + + M+ AG PD TF ++ G+ ++ R +E
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAG--VRPDVYTFPCVLRTCGGIPDLARGREV 209
Query: 321 ------------------------------ALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 350
+ L++ MP+R +++NA++ G F
Sbjct: 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFE 265
Query: 351 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIH 406
E E+F M + V D T VI CE L +R ++ V
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISA-CE---LLGDERLGREMHGYVVKTGFAV 321
Query: 407 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACKLSMKREAYQI 465
D V ++I+ G EA E V S + T + V + +I G K + +A +
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEA-----EKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376
Query: 466 LREMRKNGLNPDAVT 480
M ++ ++PD +T
Sbjct: 377 YALMEQDNVSPDEIT 391
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 108/526 (20%), Positives = 189/526 (35%), Gaps = 105/526 (19%)
Query: 30 GEMDVAYKVFDEMRHCGVLPNSLTYSVLVR---GV---LRTRDVERANVLMFKLWERMKE 83
G D A ++ M GV P+ T+ ++R G+ R R+V A+V+ F
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH-AHVVRFGF------ 218
Query: 84 EEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH 143
E D+ V NA L+ + G V + + MP + + MI +G
Sbjct: 219 ELDVDVVNA----LITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECL 270
Query: 144 GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 203
+ + MR+ + P L++ S++ G ++ ++ G+ L+
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330
Query: 204 EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN--PTELLNVLVFMLQTQ 261
+ +A KV M +K V T + + Y KN P + L M Q
Sbjct: 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY------EKNGLPDKALETYALMEQDN 384
Query: 262 CQPDVITL-----------------------------------NTVINGFCKMGRIEEAL 286
PD IT+ N +I + K I++AL
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444
Query: 287 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 346
+V +++ K D +++T+II GL R EAL Q++ P VT A L
Sbjct: 445 EVFHNI-PEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIAALS 497
Query: 347 GLFRLRRVEEAKEVF---------------NCMLGIGVVADSTTYA-------------- 377
R+ + KE+ N +L + V YA
Sbjct: 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW 557
Query: 378 -IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL-V 435
I++ G + A ++ +V D + +++ RSG + + + + + +
Sbjct: 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617
Query: 436 DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 481
+TPN+ Y V+D + EAY + +M + PD W
Sbjct: 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVW 660
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 8e-07
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 24 SALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRG 60
G+++ A K+F+EM+ G+ PN TYS+L+ G
Sbjct: 11 DGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 8e-07
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCR 420
D TY +IDG C+ +++EA + ++++ I + Y Y+ +I GLC+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMK-KRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 28/218 (12%)
Query: 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 329
N +++ + + GR+ A N D V++ ++ G + G+ A+ L + M
Sbjct: 528 NALLDLYVRCGRMNYAWNQFNS------HEKDVVSWNILLTGYVAHGKGSMAVELFNR-M 580
Query: 330 PQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM-LGIGVVADSTTYAIVIDGLCESNQ 388
+ G +P VT+ ++L R V + E F+ M + + YA V+D L + +
Sbjct: 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640
Query: 389 LDEAKRFWDDI-VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV---TPNIV 444
L EA F + + + P D V+ A++ CR IH V L EL + PN V
Sbjct: 641 LTEAYNFINKMPITP----DPAVWGALLNA-CR---IHRHVE-LGELAAQHIFELDPNSV 691
Query: 445 CYNVVIDGACKLSMK----REAYQILREMRKNGLNPDA 478
Y +++ C L E ++ + MR+NGL D
Sbjct: 692 GYYILL---CNLYADAGKWDEVARVRKTMRENGLTVDP 726
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 1e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 437 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470
G+ P++V YN +IDG C+ EA ++L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 267 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 302
+T NT+I+G CK GR+EEAL++ +M + PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKE-RGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 155 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 186
+GL P +V+YN+++ GLC+ G A +LL+E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 12/27 (44%), Positives = 22/27 (81%)
Query: 267 ITLNTVINGFCKMGRIEEALKVLNDMV 293
+T N++I+G+CK G++EEAL++ +M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 409 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 443
Y +I GLC++G++ EA+ E+ + G+ P++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 444 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 478
V YN +IDG CK EA ++ +EM++ G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 8e-05
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 332 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 364
+G P +VTYN ++ GL R RV+EA E+ + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 87/403 (21%), Positives = 155/403 (38%), Gaps = 60/403 (14%)
Query: 112 RIAEDMPQGKSVNEEFA-----CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 166
R+ +M G V FA C +I G A +V M + VS+ +
Sbjct: 305 RLGREM-HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTA 359
Query: 167 IVHGLCKHG---GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 223
++ G K+G + Y L+E Q P E T ++ DL+ K+ +
Sbjct: 360 MISGYEKNGLPDKALETYALME---QDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416
Query: 224 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIE 283
K + + N + K + L V + + DVI+ ++I G R
Sbjct: 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNI----PEKDVISWTSIIAGLRLNNRCF 472
Query: 284 EALKVLNDMVAGKFCAPDAVTFTTII-----FGLLNVGR----------------IQEAL 322
EAL M+ P++VT + G L G+ + AL
Sbjct: 473 EALIFFRQMLLT--LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530
Query: 323 NLLYQVMPQRGYS--------PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 374
LY + Y+ +V++N +L G + A E+FN M+ GV D
Sbjct: 531 LDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590
Query: 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYE 433
T+ ++ S + + ++ + +I N YA ++ L R+GK+ EA +F+ +
Sbjct: 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650
Query: 434 LVDSGVTPNIVCYNVVIDGACKLSMKRE----AYQILREMRKN 472
+ +TP+ + +++ AC++ E A Q + E+ N
Sbjct: 651 M---PITPDPAVWGALLN-ACRIHRHVELGELAAQHIFELDPN 689
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 369
VTYN+++ G + ++EEA E+F M GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 41/233 (17%)
Query: 274 NGFCKMGRIEEALKVLNDM-----------VAGKF---C-----APDAVTFTTII----- 309
N + GRI++ + +L DM KF C +A F +I
Sbjct: 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTL 437
Query: 310 --FGLL-----NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 362
F +L + I AL +L +++ + G Y ++ + +V+ EVF+
Sbjct: 438 STFNMLMSVCASSQDIDGALRVL-RLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH 496
Query: 363 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD-DIVWPSNIH-DNYVYAAMIKGLCR 420
M+ GV A+ T+ +IDG + Q+ AK F I+ N+ D V+ A+I +
Sbjct: 497 EMVNAGVEANVHTFGALIDGCARAGQV--AKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 421 SGKIHEAVHFLYELVDSG--VTPNIVCYNVVIDGACK---LSMKREAYQILRE 468
SG + A L E+ + P+ + ++ + +E YQ++ E
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 278
N + C E L + M + +P+V T + +I+G CK
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 2e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 368 GVVADSTTYAIVIDGLCESNQLDEAKRFWDD 398
G+ D TY +IDGLC + ++DEA D+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 4e-04
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 298 CAPDAVTFTTIIFGLLNVGRIQEALNLL 325
PD VT+ T+I GL GR+ EA+ LL
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 5e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 444 VCYNVVIDGACKLSMKREAYQILREMRKNGL 474
V YN +I G CK EA ++ +EM++ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (94), Expect = 8e-04
Identities = 48/266 (18%), Positives = 89/266 (33%), Gaps = 11/266 (4%)
Query: 212 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV----FMLQTQCQPDVI 267
L+ L +L + L L++ EL L +
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 327
L + K+GR+EEAL++L + + A + L +G+ +EAL LL +
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 328 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG--VVADSTTYAIVIDGLCE 385
P + L L+ L EEA E++ L + + + + L
Sbjct: 121 A-LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA 179
Query: 386 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 445
+ +EA + + + D + + GK EA+ + + ++
Sbjct: 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239
Query: 446 YNVVIDGACKLSMKREAYQILREMRK 471
YN+ A L + L + K
Sbjct: 240 YNL----ALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 49 PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 103
P+ +TY+ L+ G + VE A KL+ MK + + N ++ L+D LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEA----LKLFNEMK-KRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERM 81
L + G+ +A ++F+ M GV P+ +T+ L+ R+ V + + + M
Sbjct: 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG----LEYFHSM 615
Query: 82 KEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 118
+E+ ++ N +A +VD L R G + E + MP
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
|
Length = 857 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 266 VITLNTVINGFCKMGRIEEALKVLNDMVA 294
+ T N ++ K G + AL VL +M A
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKA 29
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 339 VTYNAVLRGLFRLRRVEEAKEVFN 362
VTYN ++ GL + RVEEA E+F
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFK 24
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.78 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.76 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.61 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.51 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.48 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.47 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.43 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.41 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.4 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.36 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.34 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.32 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.31 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.29 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.29 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.28 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.27 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.22 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.19 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.15 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.15 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.12 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.08 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.01 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.01 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.96 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.95 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.92 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.9 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.84 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.82 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.82 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.81 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.8 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.8 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.78 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.77 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.74 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.73 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.72 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.7 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.7 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.68 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.68 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.66 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.63 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.62 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.61 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.61 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.57 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.56 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.54 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.53 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.49 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.38 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.35 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.27 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.22 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.21 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.18 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.16 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.14 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.08 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.07 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.07 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.04 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.02 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.02 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.02 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.97 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.96 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.95 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.94 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.93 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.89 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.89 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.88 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.86 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.86 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.85 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.85 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.83 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.83 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.83 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.81 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.78 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.76 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.72 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.71 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.71 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.69 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.68 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.66 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.63 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.6 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.59 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.53 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.53 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.52 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.52 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.5 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.49 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.46 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.43 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.43 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.38 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.37 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.36 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.36 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.35 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.3 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.28 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.27 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.24 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.22 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.19 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.18 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.16 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.13 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.11 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.1 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.09 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.04 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.01 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.01 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.94 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.89 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.88 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.86 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.77 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.76 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.75 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.75 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.71 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.61 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.58 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.46 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.43 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.42 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.39 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.3 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.26 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.23 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.21 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.21 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.2 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.19 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.12 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.07 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.04 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.03 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.97 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.96 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.95 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.9 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.87 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.63 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.62 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.54 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.5 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.49 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.42 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.42 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.41 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.25 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.14 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.09 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.04 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.01 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.98 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.91 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.84 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.8 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.79 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.78 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.64 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.64 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.63 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.6 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.43 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.29 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 94.27 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.12 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.82 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.72 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.46 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.27 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.19 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.14 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.12 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.12 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.86 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.72 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.6 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.33 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.3 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.26 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.05 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.04 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.87 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.86 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.84 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.82 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.72 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.62 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.3 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.21 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.0 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.71 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.64 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.44 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.11 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.03 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.02 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.99 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.86 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.79 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.78 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.74 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.15 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 88.82 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.78 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.58 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.44 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.14 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.07 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.02 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.96 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.92 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.14 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.1 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.09 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.52 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.31 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 85.58 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 85.56 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 85.45 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.34 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.89 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.65 | |
| PF11848 | 48 | DUF3368: Domain of unknown function (DUF3368); Int | 84.5 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.47 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.36 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.28 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.89 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.61 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 83.54 | |
| PF11663 | 140 | Toxin_YhaV: Toxin with endonuclease activity YhaV; | 83.3 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.02 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.01 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 82.84 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.66 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 82.61 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 82.59 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 82.12 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 81.79 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.73 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.62 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 81.0 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.9 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.88 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.49 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-69 Score=529.99 Aligned_cols=465 Identities=15% Similarity=0.205 Sum_probs=428.6
Q ss_pred CChhhHHHHH---HhcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH
Q 010853 17 PPVASLTSAL---AITGEMDVAYKVFDEMRHCGV-LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 92 (499)
Q Consensus 17 ~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
++...++.+| ++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|..++|..+ ++.|+. |+..
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~l----f~~M~~-----pd~~ 438 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF----AKLIRN-----PTLS 438 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHH----HHHcCC-----CCHH
Confidence 4444555555 788999999999999999986 45777888899999999999999774 455542 8999
Q ss_pred hHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 010853 93 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 172 (499)
Q Consensus 93 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 172 (499)
+|+.++.+|++.|++++|.++|+.|.+.|..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCCCchhhHHHHHHHHhccCChHHH
Q 010853 173 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS--KKDVDRTRICNIYLRALCLIKNPTEL 250 (499)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a 250 (499)
+.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .+..|+..+|+.++.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999975 57889999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhc
Q 010853 251 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 330 (499)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 330 (499)
.++|+.|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.+. .||..+|+.++.+|++.|++++|.+++.+ |.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~k~G~~eeA~~l~~e-M~ 676 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDEVFFSALVDVAGHAGDLDKAFEILQD-AR 676 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HH
Confidence 99999999999999999999999999999999999999999999886 89999999999999999999999999988 55
Q ss_pred cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHH
Q 010853 331 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 410 (499)
Q Consensus 331 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 410 (499)
..|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|..||..+
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c-------------------CChHHHHHHHH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK----L-------------------SMKREAYQILR 467 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~ 467 (499)
|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|..+|+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999866432 1 12367999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHhcccC
Q 010853 468 EMRKNGLNPDAVTWRILDKLHGNRG 492 (499)
Q Consensus 468 ~m~~~g~~p~~~~~~~l~~~~~~~g 492 (499)
+|++.|+.||..||+.++.+++..+
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPH 861 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccc
Confidence 9999999999999999997665544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-67 Score=518.00 Aligned_cols=459 Identities=16% Similarity=0.225 Sum_probs=432.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 101 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (499)
+...+.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|+++.|..++. .|.+. ++.||..+|+.+|.+|
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~----~M~~~-Gl~pD~~tynsLI~~y 482 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLR----LVQEA-GLKADCKLYTTLISTC 482 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHH----HHHHc-CCCCCHHHHHHHHHHH
Confidence 44556889999999999999975 899999999999999999999988654 44444 8999999999999999
Q ss_pred HcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010853 102 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 181 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 181 (499)
++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 483 ~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh--CCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 010853 182 QLLEEGIQ--FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 259 (499)
Q Consensus 182 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (499)
++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.+..|+..+|+.++.+|++.|++++|.++|++|.+
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999976 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchh
Q 010853 260 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 339 (499)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 339 (499)
.|+.||..+|+.++.+|++.|++++|.++|++|.+.+. .||..+|+.++.+|++.|++++|.++|++ |...++.||..
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-~pd~~tynsLI~ay~k~G~~eeA~~lf~e-M~~~g~~Pdvv 720 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI-KLGTVSYSSLMGACSNAKNWKKALELYED-IKSIKLRPTVS 720 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCCHH
Confidence 99999999999999999999999999999999999886 99999999999999999999999999988 55788999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++++|.+.|+.||..+|++++..|.
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred h----c-------------------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 420 R----S-------------------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 420 ~----~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
+ + +..++|..+|++|++.|+.||..||+.++.++++.+..+.+..+++.|...+..|
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~ 880 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQ 880 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCc
Confidence 2 1 2346899999999999999999999999988888999999999999998888999
Q ss_pred CHhHHHHHHHHhccc
Q 010853 477 DAVTWRILDKLHGNR 491 (499)
Q Consensus 477 ~~~~~~~l~~~~~~~ 491 (499)
+..+|+.|++++++.
T Consensus 881 ~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 881 KQSNLSTLVDGFGEY 895 (1060)
T ss_pred chhhhHHHHHhhccC
Confidence 999999999998654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-65 Score=513.89 Aligned_cols=459 Identities=18% Similarity=0.235 Sum_probs=337.8
Q ss_pred CCChhhHHHHH---HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH
Q 010853 16 FPPVASLTSAL---AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 92 (499)
Q Consensus 16 ~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
.|+..+|+.++ ++.|++++|+++|++|...|+.||..+|+.++++|.+.++...+.+++..+.. . +..|+..
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~----~-g~~~~~~ 223 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR----F-GFELDVD 223 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH----c-CCCcccc
Confidence 45666666555 89999999999999999999999999888888888888887777765544432 2 6777777
Q ss_pred hHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 010853 93 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 172 (499)
Q Consensus 93 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 172 (499)
++++++.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Confidence 788888888888888888888887764 5667777888888888888888888877777777777777777777777
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHH
Q 010853 173 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 252 (499)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 252 (499)
+.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ++..+|+.++.+|++.|++++|.+
T Consensus 300 ~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHH
Confidence 7777777777777777777777777777777777777777777777766642 455566666666666666666666
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhc--
Q 010853 253 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP-- 330 (499)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 330 (499)
+|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.+. .|+..+|+.++.+|++.|++++|.++|+++.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 454 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL-ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 666666666666666666666666666666666666666665554 55555555555555555555555555554211
Q ss_pred ---------------------------cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHH
Q 010853 331 ---------------------------QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 383 (499)
Q Consensus 331 ---------------------------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (499)
..++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.|+.+|
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 01345555555555555555555555555555555555555555556666666
Q ss_pred HhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 010853 384 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 463 (499)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 463 (499)
+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.
T Consensus 535 ~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 6777777777777665 56888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HCCCCCCHhHHHHHHHHhcccCC
Q 010853 464 QILREMR-KNGLNPDAVTWRILDKLHGNRGN 493 (499)
Q Consensus 464 ~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~ 493 (499)
++|+.|. +.|+.|+..+|+.++++|++.|+
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 9999998 78999999999999999999987
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=482.12 Aligned_cols=450 Identities=18% Similarity=0.229 Sum_probs=422.3
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 20 ASLTSALAITGEMDVAYKVFDEMRHCG-VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
.+.+..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..+ ... ++.|+..+|+.++
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m----~~~-g~~~~~~~~n~Li 165 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHV----ESS-GFEPDQYMMNRVL 165 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH----HHh-CCCcchHHHHHHH
Confidence 344445589999999999999998764 6799999999999999999999998865544 333 8899999999999
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChh
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 178 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 178 (499)
..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999976 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHH
Q 010853 179 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 258 (499)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (499)
.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. ++..+|+.++.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999853 577899999999999999999999999999
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch
Q 010853 259 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 338 (499)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 338 (499)
+.|+.||..||+.++.+|++.|++++|.+++..|.+.+. .||..+|+.++.+|++.|++++|.++|+++. .||.
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~ 391 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMP-----RKNL 391 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCe
Confidence 999999999999999999999999999999999999886 8999999999999999999999999998853 4799
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhc-CCCCCCHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW-PSNIHDNYVYAAMIKG 417 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~ 417 (499)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .+..|+..+|+.++.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975 6899999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhcccCC
Q 010853 418 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHGNRGN 493 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 493 (499)
|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+ +.|+ ..+|..|+..|++.|+
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCC
Confidence 99999999999998865 5789999999999999999999999999999975 6675 6799999999999997
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=491.93 Aligned_cols=448 Identities=19% Similarity=0.239 Sum_probs=398.6
Q ss_pred ChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHH
Q 010853 18 PVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 97 (499)
Q Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (499)
...+++..|++.|+++.|.++|++|.. ||..+||+++.+|.+.|++++|..++ .+|... ++.||..||+.+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf----~~M~~~-g~~Pd~~ty~~l 294 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELF----FTMREL-SVDPDLMTITSV 294 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHH----HHHHHc-CCCCChhHHHHH
Confidence 344555666888888888888888864 67888888888888888888887754 444444 788888999999
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 177 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 177 (499)
+.+|++.|+++.|.+++..+.+.|..||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCH
Confidence 99999999999999999988888888898999999999999999999999998886 36888899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHH
Q 010853 178 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 257 (499)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (499)
++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|..++..+++.++.+|++.|++++|.++|++|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 99999999998889999999999999999999999999999999988888888889999999999999999999999888
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc
Q 010853 258 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 337 (499)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 337 (499)
.+ +|..+|+.++.+|++.|+.++|..+|++|... ..||..||+.++.+|++.|..+.+.+++..+ ...|+.++
T Consensus 451 ~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~--~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~-~~~g~~~~ 523 (857)
T PLN03077 451 PE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIAALSACARIGALMCGKEIHAHV-LRTGIGFD 523 (857)
T ss_pred CC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC--CCCCHhHHHHHHHHHhhhchHHHhHHHHHHH-HHhCCCcc
Confidence 63 57788999999999999999999999999763 4899999999999999999999999988874 57899999
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 417 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 417 (499)
..+++.++.+|++.|++++|..+|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 999999999999999999999999987 579999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCC
Q 010853 418 LCRSGKIHEAVHFLYELV-DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 493 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 493 (499)
|.+.|.+++|.++|++|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|. +.||..+|+.|+.+|...|+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999 68999999999999999999999999999999983 78999999999999987776
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-61 Score=472.66 Aligned_cols=438 Identities=17% Similarity=0.200 Sum_probs=412.1
Q ss_pred CCChhhHHHHH---HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH
Q 010853 16 FPPVASLTSAL---AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 92 (499)
Q Consensus 16 ~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
.|+..+++.++ ++.++++.|.+++..|.+.|+.||..+|+.++.+|.+.|++++|..+ |++|+ .||..
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l----f~~m~-----~~~~~ 190 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL----FDEMP-----ERNLA 190 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHH----HhcCC-----CCCee
Confidence 35666666665 88999999999999999999999999999999999999999999874 55554 36899
Q ss_pred hHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 010853 93 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 172 (499)
Q Consensus 93 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 172 (499)
+|++++.+|++.|++++|.++|++|.+.|..|+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+|+.|+.+|+
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHH
Q 010853 173 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 252 (499)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 252 (499)
+.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|...+..|+..+|+.++.+|++.|++++|.+
T Consensus 271 k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 271 KCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 99999999999999954 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 253 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.|+.+|++.|+.++|.++|++ |...
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~-M~~~ 420 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFER-MIAE 420 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHH-HHHh
Confidence 99999999999999999999999999999999999999996 57999999999999999999999999999 5588
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHH
Q 010853 333 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 411 (499)
Q Consensus 333 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 411 (499)
|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++++ +..|+..+|
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~ 497 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMW 497 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHH
Confidence 9999999999999999999999999999999986 699999999999999999999999999999876 468999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
++|+.+|...|+++.|..+++++.+.++ .+..+|..++..|++.|++++|.+++++|.+.|+..
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999999976542 256799999999999999999999999999998753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-29 Score=260.11 Aligned_cols=451 Identities=14% Similarity=0.064 Sum_probs=371.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 101 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (499)
+...+.+.|++++|+++++.+.... ++++.++..+..++...|++++|...+.++++..+ .+...+..+...+
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~ 509 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP------DFFPAAANLARID 509 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHH
Confidence 3444477888888888888887653 45677888888888889999998888777765322 2445677788888
Q ss_pred HcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010853 102 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 181 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 181 (499)
...|++++|.+.++.+...++ .+..++..+...+.+.|+.++|...++++.+.+. .+...+..++..+...|++++|.
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHH
Confidence 888999999999988877654 4567788888888889999999999988877643 35667788888899999999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 010853 182 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 261 (499)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 261 (499)
++++.+.+.. +.+...|..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...++.+.+..
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-QPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999887643 446678888999999999999999999998753 34456678888888999999999999999988765
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhH
Q 010853 262 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 341 (499)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (499)
+ .+..++..+...+...|++++|.++++.+.... +.+...+..+...+...|++++|...+.+++.. .|+..++
T Consensus 666 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 739 (899)
T TIGR02917 666 P-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNA 739 (899)
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHH
Confidence 3 367788889999999999999999999998765 567788888899999999999999999887644 3555677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 421 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (499)
..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+..+ .+..+++.+...+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 788889999999999999999998875 66788899999999999999999999999987654 4778899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCC
Q 010853 422 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 494 (499)
Q Consensus 422 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 494 (499)
|+ .+|+.+++++.+.... +..++..+...+...|++++|.++++++.+.+.. +..++..+..++.+.|+.
T Consensus 818 ~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRK 887 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCH
Confidence 99 8899999999886433 5667888888999999999999999999986643 888999999999999874
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-29 Score=255.75 Aligned_cols=430 Identities=12% Similarity=0.037 Sum_probs=374.1
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHH
Q 010853 20 ASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD 99 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (499)
..+..++...|++++|.+.|+++.+.. +.+...+..++..+...|++++|...+.++++..+ .+..++..+..
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~ 541 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP------KNLRAILALAG 541 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------CcHHHHHHHHH
Confidence 344556689999999999999998864 34677788899999999999999998888776432 25678888999
Q ss_pred HHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhH
Q 010853 100 SLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 179 (499)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 179 (499)
.+.+.|+.++|...++++...++ .+...+..+...+...|++++|..+++.+.+.. ..+...|..+..++...|++++
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999887665 556678889999999999999999999998764 3467889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 010853 180 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 259 (499)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (499)
|...|+.+.+.. +.+...+..+...+...|++++|..+++++.+ ..+.+...+..+...+...|++++|.++++.+.+
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE-LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998754 23567788899999999999999999999985 3455677899999999999999999999999998
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchh
Q 010853 260 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 339 (499)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 339 (499)
..+ .+...+..+...+...|++++|...|+.+.... |+..++..+..++.+.|++++|.+.+.+.+... +.+..
T Consensus 698 ~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~ 771 (899)
T TIGR02917 698 QHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA---PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAV 771 (899)
T ss_pred hCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH
Confidence 864 467788889999999999999999999998764 555778889999999999999999999977554 55778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
.+..+...+...|++++|..+|+++.+.. +.+..++..+...+...|+ .+|..+++++....+. +..++..+...+.
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 848 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 88889999999999999999999999876 6688899999999999999 8899999999876543 5667888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 420 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 420 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
..|++++|.++++++.+.+.. +..++..+..++.+.|++++|.+++++|+
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999998755 88999999999999999999999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-21 Score=202.97 Aligned_cols=438 Identities=11% Similarity=0.030 Sum_probs=333.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCc-c-------CHHhHH
Q 010853 24 SALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS-V-------NNAAFA 95 (499)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~-------~~~~~~ 95 (499)
..+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|+..+.++++.-+...... + ......
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34478899999999999999864 34788899999999999999999999988876544321100 0 001112
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
.....+.+.|++++|+..|+++.+..+ .+..++..+..++...|++++|.+.|++..+.... +...+..+...+. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 335567889999999999999988765 45667778899999999999999999999987432 4556666777664 56
Q ss_pred ChhHHHHHHHHHHhCCCC--------CCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCh
Q 010853 176 GCMRAYQLLEEGIQFGYL--------PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 247 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 247 (499)
+.++|..+++.+...... .....+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCH
Confidence 789999888765432100 11234556777888999999999999999853 344566788889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHH---------HHHHHHHHHHccCCH
Q 010853 248 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV---------TFTTIIFGLLNVGRI 318 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~ 318 (499)
++|...++++.+..+. +...+..+...+...++.++|+..++.+..... .++.. .+..+...+...|+.
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~-~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQW-NSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhc-ChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 9999999999876533 444555555667788999999999998764322 22221 123456678899999
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 010853 319 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 398 (499)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 398 (499)
++|..++.. .+.+...+..+...+.+.|++++|...|+...+.. +.+...+..++..+...|++++|.+.++.
T Consensus 590 ~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 590 AEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999998863 14455667778888999999999999999999875 55788899999999999999999999998
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHH-HC
Q 010853 399 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-----NIVCYNVVIDGACKLSMKREAYQILREMR-KN 472 (499)
Q Consensus 399 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~ 472 (499)
+...... +...+..+..++...|++++|.++++++....... +...+..+...+...|++++|+..|++.. ..
T Consensus 663 ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 663 LPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 8765332 55567778889999999999999999998754221 22456666788899999999999999975 34
Q ss_pred CCCC
Q 010853 473 GLNP 476 (499)
Q Consensus 473 g~~p 476 (499)
|+.|
T Consensus 742 ~~~~ 745 (1157)
T PRK11447 742 GITP 745 (1157)
T ss_pred CCCC
Confidence 5543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-21 Score=198.14 Aligned_cols=451 Identities=13% Similarity=0.051 Sum_probs=297.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhh-HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLT-YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS 100 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (499)
...++.+.|++++|++.|+.+...+ +|+... ...+.......|+.++|...++++.+..|. +...+..+...
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~------~~~~~~~LA~l 190 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG------NTGLRNTLALL 190 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC------CHHHHHHHHHH
Confidence 3445678888888888888887753 333321 111222223457888888877777665433 34566677788
Q ss_pred HHcCCCHhHHHHHHHhccCCCCC--------------------------------CchhhH-------------------
Q 010853 101 LCREGYVNEVFRIAEDMPQGKSV--------------------------------NEEFAC------------------- 129 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~------------------- 129 (499)
+...|+.++|++.++++...... |+....
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 88888888888888776432210 000000
Q ss_pred --HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCc-ccH-------
Q 010853 130 --GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE-HTY------- 199 (499)
Q Consensus 130 --~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------- 199 (499)
......+...|++++|...|++..+.... +...+..+..++.+.|++++|...|++..+....... ..+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 01123456678888888888888776332 5677788888888888888888888887764321111 111
Q ss_pred -----HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHH---
Q 010853 200 -----KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT--- 271 (499)
Q Consensus 200 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 271 (499)
......+.+.|++++|...|+++... .+.+...+..+...+...|++++|++.|++..+.... +...+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 12234566788888888888888754 3344556667778888888888888888887765432 2222222
Q ss_pred ---------------------------------------HHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 010853 272 ---------------------------------------VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 272 ---------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (499)
+...+...|++++|++.|++..+.. +.+...+..+...|
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 2334556788888888888887764 44566777788888
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCchhhHHHHH--------------------------------------------HHH
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL--------------------------------------------RGL 348 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll--------------------------------------------~~~ 348 (499)
.+.|++++|...+++.+....- +...+..+. ..+
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~--~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPN--DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 8889999998888887654322 222222222 223
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
...|+.++|..+++. .+.+...+..+...+.+.|++++|...++++....+. +...+..++..|...|++++|.
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 334444444444441 2445566777888889999999999999999876544 6778889999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C---CHhHHHHHHHHhcccCC
Q 010853 429 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN--P---DAVTWRILDKLHGNRGN 493 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~--p---~~~~~~~l~~~~~~~g~ 493 (499)
+.++.+.+... .+...+..+..++...|++++|.++++++....-. | +...+..+.+.+.+.|+
T Consensus 658 ~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~ 726 (1157)
T PRK11447 658 AQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ 726 (1157)
T ss_pred HHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC
Confidence 99998876532 24556677788888999999999999998764221 1 22455555666666665
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-21 Score=171.78 Aligned_cols=436 Identities=13% Similarity=0.055 Sum_probs=339.2
Q ss_pred hhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 19 VASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
...+...+.+.|++..|.+--...-..+ +.+....-.+-..+.+..+++...+.-...++ ....-..+|..+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r------~~~q~ae~ysn~a 123 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR------KNPQGAEAYSNLA 123 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhh------ccchHHHHHHHHH
Confidence 3444555567777777777666555543 22333333444555555555554432221222 1222457899999
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH-HHHHHHccCCh
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS-IVHGLCKHGGC 177 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~~~~ 177 (499)
+.+-..|++++|+..++.+.+..+ ....+|..+..++...|+.+.|.+.|....+. .|+.....+ +...+...|+.
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhccc
Confidence 999999999999999999988765 45778999999999999999999999998876 555554433 44445558999
Q ss_pred hHHHHHHHHHHhCCCCCC-cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHH
Q 010853 178 MRAYQLLEEGIQFGYLPS-EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 256 (499)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 256 (499)
++|...|.+.++. .|. ...|+.|...+...|++..|+..|++..+- .+.-...|-.+...|...+.+++|...+..
T Consensus 201 ~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 201 EEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-DPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred chhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC-CCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 9999999988774 343 467888999999999999999999998742 333356888899999999999999999988
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCC
Q 010853 257 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 336 (499)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 336 (499)
.....+. ....+..+...|...|.++.|+..+++..+.. +.-...|+.|..++-..|+..+|.+.|.+.+.-. +.
T Consensus 278 Al~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~ 352 (966)
T KOG4626|consen 278 ALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--PN 352 (966)
T ss_pred HHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--Cc
Confidence 8776432 56677788888999999999999999998765 4447889999999999999999999999987554 22
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
.....+.+...+...|.++.|..+|....+.. +--....+.|...|-..|++++|...+++.+...+. -...|+.+..
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGn 430 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGN 430 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcch
Confidence 34567889999999999999999999998853 334567889999999999999999999999764332 2347899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 010853 417 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 477 (499)
Q Consensus 417 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 477 (499)
.|-..|+.+.|++.+.+.+..++. =...++.|...|-..|+..+|+.-+++..+ ++||
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 999999999999999999876432 346788999999999999999999999987 6776
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-19 Score=175.53 Aligned_cols=424 Identities=11% Similarity=-0.010 Sum_probs=275.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcC
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 104 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 104 (499)
.+.+.|++++|+..|++.... .|++..|..+..++.+.|++++|...+.++++.-+ -+...+..+..++...
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p------~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP------DYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHc
Confidence 347789999999999998875 47778888888899999999999888877765322 2456778888889999
Q ss_pred CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010853 105 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 184 (499)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 184 (499)
|++++|+.-|..+...+...+... ..++..+.. ..+........+.. .++...+..+.. +...........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 999999887766544332222211 111211111 12222222222221 112223322222 21111111111111
Q ss_pred HHHHhCCCCCC-cccHHHHHHH---HhcCCCHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHhccCChHHHHHHHHHHH
Q 010853 185 EEGIQFGYLPS-EHTYKVLVEG---LCGESDLEKARKVLQFMLSKK--DVDRTRICNIYLRALCLIKNPTELLNVLVFML 258 (499)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (499)
....+ ..+. ...+..+... ....+++++|.+.|+.....+ .+.....+..+...+...|++++|...++...
T Consensus 281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111 1111 1111111111 123467888888888887654 22334467777778888889999998888888
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch
Q 010853 259 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 338 (499)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 338 (499)
+..+. ....|..+..++...|++++|...|+++.+.. +.+...|..+...+...|++++|...|.+.+... +.+.
T Consensus 359 ~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~ 433 (615)
T TIGR00990 359 ELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFI 433 (615)
T ss_pred HcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCH
Confidence 76432 45577778888888889999999888887654 4567788888888888899999998888876543 3345
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH------HHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY------VYA 412 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~ 412 (499)
..+..+..++.+.|++++|+..|+...+.. +.+...++.+..++...|++++|...|++........+.. .++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 666677778888899999999998887753 4467788888888888899999999888887554321111 122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 472 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 472 (499)
..+..+...|++++|.+++++....+.. +...+..+...+...|++++|++.|++..+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2223344468888999988888776532 4456788888888899999999888888653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-21 Score=177.55 Aligned_cols=302 Identities=12% Similarity=0.043 Sum_probs=178.2
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC---cccHHHHHHHHhcCCC
Q 010853 135 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS---EHTYKVLVEGLCGESD 211 (499)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 211 (499)
.+...|++++|...|+++.+.+.. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344556666666666666655321 334555555555666666666666655554321111 1233444444555555
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 212 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 291 (499)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 291 (499)
++.|..+|+++. +.. +.+..++..++..+.+.|++++|.+.++.
T Consensus 123 ~~~A~~~~~~~l-----------------------------------~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 123 LDRAEELFLQLV-----------------------------------DEG-DFAEGALQQLLEIYQQEKDWQKAIDVAER 166 (389)
T ss_pred HHHHHHHHHHHH-----------------------------------cCC-cchHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 555555555544 332 22455566666666666666666666666
Q ss_pred HhhCCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 292 MVAGKFCAPD---AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 292 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
+.+.....+. ...+..+...+.+.|++++|...+.++.+.. +.+...+..+...+.+.|++++|.++++++.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 167 LEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 6554321111 1233445556666777777777776655332 2234455666667777777777777777776643
Q ss_pred CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 010853 369 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 448 (499)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 448 (499)
......++..++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 22223456677777777777777777777776543 34455567777777777777777777777765 566667776
Q ss_pred HHHHHHh---cCChHHHHHHHHHHHHCCCCCCHh
Q 010853 449 VIDGACK---LSMKREAYQILREMRKNGLNPDAV 479 (499)
Q Consensus 449 l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~ 479 (499)
++..+.. .|+.++++.++++|.+.++.|++.
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 6666554 446777777777777766666654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-19 Score=174.25 Aligned_cols=330 Identities=12% Similarity=0.063 Sum_probs=142.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHH
Q 010853 55 SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 134 (499)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 134 (499)
..++..+.+.|++++|..++..++...+. +...+..++.++...|++++|...++.+....+ .+...+..+..
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~------~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~ 118 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN------GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVAS 118 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC------chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 33444455555555555554444443222 122333344444445555555555555544433 23334444445
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHH
Q 010853 135 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 214 (499)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (499)
.+...|++++|...++...+.... +...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHH
Confidence 555555555555555555443111 2334444455555555555555555544332211 11111111 22444455555
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHH
Q 010853 215 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE----ALKVLN 290 (499)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~ 290 (499)
|...++.+......++......+...+...|++++|...++...+..+. +...+..+...+...|++++ |...|+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 5555555443322222222233334444455555555555544443321 33344444444444554443 444444
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 010853 291 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 370 (499)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 370 (499)
...+.. +.+...+..+...+...|++++|...+++.+... +.+...+..+..++...|++++|...++.+.+.+ +
T Consensus 275 ~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P 349 (656)
T PRK15174 275 HALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-G 349 (656)
T ss_pred HHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence 444432 2334444444444555555555555444443322 1122233334444444455555555554444432 1
Q ss_pred cCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 371 ADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 371 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
.+...+..+..++...|+.++|...|++..
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111222223334444455555555554444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-21 Score=175.37 Aligned_cols=309 Identities=14% Similarity=0.026 Sum_probs=231.3
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---hhhHHHHHHHHH
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS---LVSYNSIVHGLC 172 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~ 172 (499)
.....+...|++++|...|+++.+.++ .+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 344566788999999999999998765 4566888899999999999999999999988643222 246788899999
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHH
Q 010853 173 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 252 (499)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 252 (499)
..|+++.|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+...
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------------- 177 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-------------------- 177 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH--------------------
Confidence 9999999999999998753 3466788889999999999999999999887543221100
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 253 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
.....+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.+.++....
T Consensus 178 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 178 -----------EIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred -----------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 001123455666677777777777777776543 3345566677777777888888888777765332
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHH
Q 010853 333 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 412 (499)
Q Consensus 333 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (499)
......++..++.++...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++
T Consensus 245 -p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~ 319 (389)
T PRK11788 245 -PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH 319 (389)
T ss_pred -hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence 1111345677788888888888888888888775 355566678888888889999999988888654 56777888
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChh
Q 010853 413 AMIKGLCR---SGKIHEAVHFLYELVDSGVTPNIV 444 (499)
Q Consensus 413 ~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 444 (499)
.++..+.. .|+.++++.++++|.+.++.|++.
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77777664 457888888898888877777665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-19 Score=172.76 Aligned_cols=334 Identities=13% Similarity=0.062 Sum_probs=266.8
Q ss_pred ChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHH
Q 010853 18 PVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 97 (499)
Q Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (499)
+...++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|...+.+++..-|. +...+..+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~------~~~a~~~l 116 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC------QPEDVLLV 116 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC------ChHHHHHH
Confidence 34455666689999999999999998863 446777888888889999999999988887765443 35567888
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 177 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 177 (499)
...+.+.|++++|...+++.....+ .+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCH
Confidence 8999999999999999999987654 45677888999999999999999999988776433 23333333 347789999
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHH----HHHH
Q 010853 178 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE----LLNV 253 (499)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~ 253 (499)
++|...++.+.+....++...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-GLDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 999999999877543344445556677888999999999999999854 45567788889999999999985 7999
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCC
Q 010853 254 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 333 (499)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 333 (499)
++...+..+. +...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...+.+++...
T Consensus 273 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~- 348 (656)
T PRK15174 273 WRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK- 348 (656)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 9998887543 67788999999999999999999999998765 4566778888999999999999999998876543
Q ss_pred CCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 334 YSPGI-VTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 334 ~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
|+. ..+..+..++...|+.++|...|+...+..
T Consensus 349 --P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 --GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred --ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 443 234445667889999999999999998763
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-20 Score=163.79 Aligned_cols=362 Identities=15% Similarity=0.054 Sum_probs=279.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH-hHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA-AFANLVDS 100 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 100 (499)
+...+...|++++|++.++.+.+.. +..+..|..+..++...|+.+.|...+...++- .|+.. ..+.+...
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql-------nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL-------NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc-------CcchhhhhcchhHH
Confidence 5566678899999999999998864 235778888999999999999888877666543 23322 22235555
Q ss_pred HHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhH
Q 010853 101 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS-LVSYNSIVHGLCKHGGCMR 179 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~ 179 (499)
+-..|++++|...+.+..+..+ --..+|+.|...+-..|+...|+..|++..+. .|+ ...|-.|...|...+.+++
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 6667888888888887766554 23467888888888899999999999988876 454 4578888888888999999
Q ss_pred HHHHHHHHHhCCCCCC-cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHH
Q 010853 180 AYQLLEEGIQFGYLPS-EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 258 (499)
Q Consensus 180 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (499)
|...|.+... ..|+ ...+..+...|...|.++.|+..+++.++. .+--+..|+.+..++-..|+..+|.+.+.+.+
T Consensus 271 Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999888765 3454 467777888888899999999999988742 23335688889999988999999999998888
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-
Q 010853 259 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG- 337 (499)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 337 (499)
..... ...+.+.|...|...|.++.|..+|....+-. +.-...++.|...|-+.|+.++|+..|++.++ +.|+
T Consensus 348 ~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~f 421 (966)
T KOG4626|consen 348 RLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTF 421 (966)
T ss_pred HhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchH
Confidence 76543 45677888889999999999999988887643 33466788888889999999999998888664 3454
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
...|+.+...|-..|+.+.|...+.+.+..+ +.-....+.|...|-..|++.+|++-++...+..+
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 4567888888888899999999998888764 34456788888889999999999999988876543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-18 Score=170.09 Aligned_cols=405 Identities=11% Similarity=0.022 Sum_probs=238.3
Q ss_pred CChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHH
Q 010853 17 PPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 96 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (499)
+-+.-|+.+....|+.++|++++.+..... +.+...+..+..++...|++++|..++.++++.-|. +...+..
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~ 88 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRG 88 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHH
Confidence 345668888899999999999999998632 345667899999999999999999988887764332 3556667
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 176 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 176 (499)
++..+...|++++|+..++++.+..+ .+.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 88889999999999999999887754 4445 888888899999999999999999987433 45566667788888899
Q ss_pred hhHHHHHHHHHHhCCCCCCc------ccHHHHHHHHh-----cCCCH---HHHHHHHHHHHhC-CCCCchh-hH----HH
Q 010853 177 CMRAYQLLEEGIQFGYLPSE------HTYKVLVEGLC-----GESDL---EKARKVLQFMLSK-KDVDRTR-IC----NI 236 (499)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ 236 (499)
.+.|++.++.... .|+. .....++.... ..+++ +.|+..++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999998876554 2321 01111222221 11223 5566666666533 1112111 11 11
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--CHHHHHHHHHHHH
Q 010853 237 YLRALCLIKNPTELLNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP--DAVTFTTIIFGLL 313 (499)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 313 (499)
.+..+...|++++|...|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+.....+ .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 122334556666666666666655422 221 112235566666666666666666554321010 1233444555566
Q ss_pred ccCCHHHHHHHHHHHhccCC----------CCCch---hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH
Q 010853 314 NVGRIQEALNLLYQVMPQRG----------YSPGI---VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 380 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 380 (499)
..|++++|...+.++..... ..|+. ..+..+...+...|++++|+++++++.... +.+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 66666666666665443221 01111 122233344445555555555555554432 33444445555
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
..+...|++++|++.++++....+. +...+...+..+...|++++|..+++++++.
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5555555555555555555443321 2333444444455555555555555555543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-17 Score=160.71 Aligned_cols=445 Identities=11% Similarity=0.056 Sum_probs=323.6
Q ss_pred hhHHHHH--HhcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH
Q 010853 20 ASLTSAL--AITGEMDVAYKVFDEMRHCGVLPNS--LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 95 (499)
Q Consensus 20 ~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (499)
..+..++ .++|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|...+++... ..........
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~------p~n~~~~~ll 106 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS------SMNISSRGLA 106 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc------CCCCCHHHHH
Confidence 4454444 99999999999999999864 543 244 888888899999999987776651 1122333444
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
.+...+...|++++|+++|+.+.+..+ .+...+..++..+...++.++|++.++.+... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 456788899999999999999998886 34667778889999999999999999999887 566666655555555566
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhh------HHHHHHHH-----hcc
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI------CNIYLRAL-----CLI 244 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~-----~~~ 244 (499)
+..+|++.++++.+.. +-+...+..+..+..+.|-...|.++.++-..- ..+.... ....++.- ...
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 7767999999999864 235677788889999999999999887764311 1111110 01111110 011
Q ss_pred CCh---HHHHHHHHHHHhc-CCCCCH-h----hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHcc
Q 010853 245 KNP---TELLNVLVFMLQT-QCQPDV-I----TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 315 (499)
Q Consensus 245 ~~~---~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (499)
.++ +.|+.-++.+... +..|.. . ...-.+-++...|+..++++.++.+...+. +....+-..+..+|...
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~-~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY-KMPDYARRWAASAYIDR 340 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHhc
Confidence 222 3455555555542 222321 1 223445677889999999999999998764 33455788899999999
Q ss_pred CCHHHHHHHHHHHhccCC----CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----------Cc--CHH-hHH
Q 010853 316 GRIQEALNLLYQVMPQRG----YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-----------VA--DST-TYA 377 (499)
Q Consensus 316 ~~~~~a~~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~--~~~-~~~ 377 (499)
+++++|..++.++....+ .+++......|.-++...+++++|..+++.+.+... .| |-. .+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 999999999999766543 233444457788899999999999999999987321 12 222 344
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
.++..+...|++.+|++.++++....+. |......+...+...|.+.+|.+.++....... -+..+......++...|
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P-~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAP-RSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHhhh
Confidence 5677788999999999999999876554 888999999999999999999999987776632 25667778888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHH
Q 010853 458 MKREAYQILREMRKNGLNPDAVTWRI 483 (499)
Q Consensus 458 ~~~~a~~~~~~m~~~g~~p~~~~~~~ 483 (499)
++++|..+.+...+ ..|+......
T Consensus 499 e~~~A~~~~~~l~~--~~Pe~~~~~~ 522 (822)
T PRK14574 499 EWHQMELLTDDVIS--RSPEDIPSQE 522 (822)
T ss_pred hHHHHHHHHHHHHh--hCCCchhHHH
Confidence 99999999988876 4565544443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-18 Score=168.77 Aligned_cols=423 Identities=9% Similarity=-0.017 Sum_probs=310.5
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchh
Q 010853 48 LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 127 (499)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 127 (499)
+.++.-..-.+.+....|+.++|+.++.++... -......+..+..++.+.|++++|.++++...+..+ .+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~ 84 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDD 84 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH
Confidence 345566667788888999999999866555431 123455688899999999999999999999887654 4456
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 010853 128 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 207 (499)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (499)
.+..+..++...|++++|...++++.+.... +.. +..+..++...|+.++|+..++++.+... .+...+..+...+.
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~ 161 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 6778888999999999999999999987332 455 88888999999999999999999988542 24455566777888
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCch------hhHHHHHHHHh-----ccCCh---HHHHHHHHHHHhc-CCCCCHh-hHH-
Q 010853 208 GESDLEKARKVLQFMLSKKDVDRT------RICNIYLRALC-----LIKNP---TELLNVLVFMLQT-QCQPDVI-TLN- 270 (499)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~- 270 (499)
..+..+.|...++.+.. .|+. ......+.... ..+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 162 ~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 162 NNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 89999999999987653 2221 01112222222 12233 6788888888754 2223221 111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCC--chhhHHHHH
Q 010853 271 ---TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP--GIVTYNAVL 345 (499)
Q Consensus 271 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll 345 (499)
..+..+...|++++|+..|+.+.+.+...|+. ....+...|...|++++|+..|.+++......+ .......+.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11334567799999999999998865312332 223357789999999999999999765432221 123455666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCC-----------CcC---HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHH
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGV-----------VAD---STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 411 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 411 (499)
.++...|++++|..+++.+.+... .|+ ...+..+...+...|++++|..+++++....+. +...+
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~ 396 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLR 396 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 678899999999999999987531 122 234566778889999999999999999876544 67789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 488 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 488 (499)
..+...+...|++++|++.+++.....+ .+...+......+...|++++|..+++++++ ..|+......+-+.+
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999999999999998752 2456677777789999999999999999988 567766665555544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.9e-18 Score=163.29 Aligned_cols=414 Identities=12% Similarity=-0.047 Sum_probs=261.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHH
Q 010853 55 SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 134 (499)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 134 (499)
......+.+.|++++|+..|.+.+.. .|+...|..+..++.+.|++++|++.++...+.++ .+..++..+..
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~-------~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~ 202 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC-------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 34455666666666666666555432 23445566666666666666666666666665543 33445555666
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHH
Q 010853 135 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 214 (499)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (499)
++...|++++|..-|......+...+. ....++..+.. ..+........+.. +++...+..+...+ .......
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~ 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKP 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCc
Confidence 666666666666666554433211111 11111111111 11111122221211 11122222221111 1111111
Q ss_pred HHHHHHHHHhCCCCCch-hhHHHHHHH---HhccCChHHHHHHHHHHHhcC-C-CCCHhhHHHHHHHHHhcCCHHHHHHH
Q 010853 215 ARKVLQFMLSKKDVDRT-RICNIYLRA---LCLIKNPTELLNVLVFMLQTQ-C-QPDVITLNTVINGFCKMGRIEEALKV 288 (499)
Q Consensus 215 a~~~~~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 288 (499)
...-+....+ ..+.. ..+..+... ....+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..
T Consensus 276 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1111111110 01110 011111111 123478899999999998765 2 23456678888889999999999999
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 289 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
|++..... +.....|..+...+...|++++|...+.+.+... +.+...|..+...+...|++++|...|++..+..
T Consensus 354 ~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 354 LSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99998764 4457788889999999999999999999987654 3456788888899999999999999999999875
Q ss_pred CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----
Q 010853 369 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV---- 444 (499)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---- 444 (499)
+.+...+..+..++.+.|++++|...+++.....+. +...|+.+..++...|++++|++.|++........+..
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~ 507 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence 556778888899999999999999999999865433 67789999999999999999999999998864331111
Q ss_pred --hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhcccCC
Q 010853 445 --CYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHGNRGN 493 (499)
Q Consensus 445 --~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 493 (499)
.++..+..+...|++++|.+++++..+. .|+ ...+..+..++.+.|+
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGD 557 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccC
Confidence 1222222344579999999999998874 454 4567888888888887
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-17 Score=162.02 Aligned_cols=173 Identities=12% Similarity=-0.021 Sum_probs=108.2
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhh
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 391 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 391 (499)
+...|++++|...+.+++.. +|+...+..+..++.+.|++++|...++...+.. +.+...+..+.......|++++
T Consensus 519 l~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 34566666666666654322 2333334444555666667777777776666553 2233333333334445577777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 392 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
|...+++..+.. |+...|..+..++.+.|++++|...+++.....+. +...++.+..++...|++++|+..+++..+
T Consensus 595 Al~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777776543 34666777777777788888888888877776432 556667777777778888888888877776
Q ss_pred CCCCC-CHhHHHHHHHHhcccCC
Q 010853 472 NGLNP-DAVTWRILDKLHGNRGN 493 (499)
Q Consensus 472 ~g~~p-~~~~~~~l~~~~~~~g~ 493 (499)
..| +...+..+..++...|+
T Consensus 672 --l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 672 --GLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred --hCCCCHHHHHHHHHHHHHCCC
Confidence 344 45566666677766665
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-17 Score=156.30 Aligned_cols=451 Identities=11% Similarity=0.030 Sum_probs=300.7
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhH
Q 010853 30 GEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 109 (499)
Q Consensus 30 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 109 (499)
..+..+..++...-... +.|++..+.|.+.+..-|++..+..+...++..+.. -..-...|..+.+++-..|++++
T Consensus 250 ~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~---~~~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN---KSIKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred HHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHhhccHHH
Confidence 44556666666655432 457889999999999999999999988888776532 23345678889999999999999
Q ss_pred HHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC----ChhHHHHHHH
Q 010853 110 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG----GCMRAYQLLE 185 (499)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~ 185 (499)
|...|....+.........+.-+...+.+.|+.+.+...|+.+.+... -+..+...|...|...+ ..+.|..++.
T Consensus 326 A~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 326 AFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 999999887766433244556688999999999999999999988732 24566777777776664 4566777777
Q ss_pred HHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHH----HhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc-
Q 010853 186 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT- 260 (499)
Q Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 260 (499)
+..+.- +.|...|..+...+.... ...++..|..+ ...+..+.+.+.|.+...+...|++++|...|...+..
T Consensus 405 K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 766543 346667777776665543 33336655544 34556678889999999999999999999999887655
Q ss_pred --CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 261 --QCQPDV------ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 261 --~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
...++. .+--.+..++-..++.+.|.+.+..+.+.. +.-+..|..+.......+...+|...+.+.+...
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 222232 223345556666778888888888888754 3334455555544445677778888888877666
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcCHHhHHHHHHHHHh------------cCChhhHHHHHHHH
Q 010853 333 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VVADSTTYAIVIDGLCE------------SNQLDEAKRFWDDI 399 (499)
Q Consensus 333 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~ 399 (499)
...|+..+ .+...+.....+..|.+-|..+.+.- ..+|..+.-.|.+.|.. .+..++|.++|.++
T Consensus 561 ~~np~ars--l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 561 SSNPNARS--LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cCCcHHHH--HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 55555433 34445566666666666555544321 12455555555554432 23456677777776
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCH
Q 010853 400 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-KNGLNPDA 478 (499)
Q Consensus 400 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~p~~ 478 (499)
++..+. |.+.-|.+.-+++..|++.+|..+|.+.++... -...+|..+..+|...|++..|+++|+... +..-.-+.
T Consensus 639 L~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 639 LRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred HhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 655544 666666677777777777777777777776543 244566777777777777777777776643 34434456
Q ss_pred hHHHHHHHHhcccCC
Q 010853 479 VTWRILDKLHGNRGN 493 (499)
Q Consensus 479 ~~~~~l~~~~~~~g~ 493 (499)
.....|.+++.+.|.
T Consensus 717 ~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 717 EVLHYLARAWYEAGK 731 (1018)
T ss_pred HHHHHHHHHHHHhhh
Confidence 666666666666554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-16 Score=158.17 Aligned_cols=220 Identities=13% Similarity=-0.016 Sum_probs=168.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 010853 246 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 325 (499)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 325 (499)
++++|...+.+..... |+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...+
T Consensus 491 ~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 491 LPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344555444444332 33332223344446789999999999987654 344555667778889999999999999
Q ss_pred HHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 010853 326 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 405 (499)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (499)
.+.+... +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++.....+.
T Consensus 566 ~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd 641 (987)
T PRK09782 566 QQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN 641 (987)
T ss_pred HHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9876543 233333333444455669999999999999986 457888999999999999999999999999877654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010853 406 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 478 (499)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 478 (499)
+...++.+..++...|++++|++.+++..+..+. +...+..+..++...|++++|+..+++..+ +.|+.
T Consensus 642 -~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 642 -NSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 6678889999999999999999999999987543 677899999999999999999999999987 45654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-17 Score=150.57 Aligned_cols=459 Identities=10% Similarity=0.018 Sum_probs=337.8
Q ss_pred CCCCChhhHHHH-HHhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC
Q 010853 14 SPFPPVASLTSA-LAITGEMDVAYKVFDEMRHCGVLP--NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN 90 (499)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (499)
...|++.+...- +.-.|++..+..+.+.+....... -...|..+.+++-..|++++|...|.+....-+.. -
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----~ 341 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----F 341 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----c
Confidence 445655444333 378899999999999998754211 23458889999999999999999886665432221 1
Q ss_pred HHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcC----ChhhHHHHHHHHHhcCCCCChhhHHH
Q 010853 91 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG----RNHGASRVVYVMRKRGLTPSLVSYNS 166 (499)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~g~~p~~~~~~~ 166 (499)
...+.-+...+.+.|+++.+...|+.+.+..+ .+..+...|...|...+ ..+.|..++.+..+.-+ .|...|-.
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~ 419 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLE 419 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHH
Confidence 22334588999999999999999999988764 44556666777776664 45777777777776642 36777877
Q ss_pred HHHHHHccCChhHHHHHHHHHH----hCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCc------hhh
Q 010853 167 IVHGLCKHGGCMRAYQLLEEGI----QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK---KDVDR------TRI 233 (499)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~------~~~ 233 (499)
+...+... +...++..|.... ..+..+.+...|.+.......|++..|...|+..... ...++ ..+
T Consensus 420 laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 420 LAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 77776544 4444476665443 4555678889999999999999999999999988754 11122 223
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
-..+...+-..++++.|.+.|..+.+..+. -+..|..+.......+...+|...+.++.... ..++..++.+...+.
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l 575 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHL 575 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHH
Confidence 445566667788999999999999887432 23344444433344578889999999998766 455566667777888
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh------------cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHH
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR------------LRRVEEAKEVFNCMLGIGVVADSTTYAIVID 381 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 381 (499)
+...+..|.+-|..........+|..+.-.|.+.|.. .+..++|+++|.+..+.. +-|...-+.+.-
T Consensus 576 ~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgi 654 (1018)
T KOG2002|consen 576 KKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGI 654 (1018)
T ss_pred hhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhh
Confidence 8888888888777766665556777777677775543 345788999999998876 668888899999
Q ss_pred HHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChH
Q 010853 382 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVIDGACKLSMKR 460 (499)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 460 (499)
+++..|++..|..+|.++.+.... ...+|-.+.++|..+|++..|+++|+...+. ....+......|.+++...|++.
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999865542 4457889999999999999999999987654 44557788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHH
Q 010853 461 EAYQILREMRKNGLNPDAVTWRILD 485 (499)
Q Consensus 461 ~a~~~~~~m~~~g~~p~~~~~~~l~ 485 (499)
+|.+.+.........-....++..+
T Consensus 734 eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 734 EAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHhCCccchHHhHHHH
Confidence 9999998887743333344455443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-18 Score=145.13 Aligned_cols=464 Identities=11% Similarity=0.064 Sum_probs=320.1
Q ss_pred hhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH-HHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHH
Q 010853 19 VASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYS-VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 97 (499)
Q Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (499)
...+.+.|..+....+|+..|+-+.+...-||...+. .+...+.+.+.+.+|+..|+..+.+.|.- +........+.+
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi-nk~~rikil~ni 282 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI-NKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc-chhhHHHHHhhc
Confidence 3445555677788889999999999888778776554 46788999999999999999888887754 334445567777
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh------------hHH
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV------------SYN 165 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~------------~~~ 165 (499)
.-.+.+.|+++.|+..|+...+.. |+..+-..|+-++.--|+.++..+.|.+|......||.. ..+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 778889999999999999988765 665554446666667799999999999998754333322 222
Q ss_pred HH-----HHHHHccC--ChhHHHHHHHHHHhCCCCCCcc-----cHHH----------------HHHHHhcCCCHHHHHH
Q 010853 166 SI-----VHGLCKHG--GCMRAYQLLEEGIQFGYLPSEH-----TYKV----------------LVEGLCGESDLEKARK 217 (499)
Q Consensus 166 ~l-----~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-----~~~~----------------l~~~~~~~~~~~~a~~ 217 (499)
.- ++.+-+.+ +-++++-.-.+++.--+.|+-. .... -.--+.+.|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 21 22222211 1122222222222222222211 0000 1223678999999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHh--ccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010853 218 VLQFMLSKKDVDRTRICNIYLRALC--LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 295 (499)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 295 (499)
+++-+.+++.......-+.+...+. .-.++..|.++-+...... +-+......-.+.....|++++|.+.+++....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 9998877655544444443333222 2456677777766655332 112222222233344578999999999998854
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHh
Q 010853 296 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 375 (499)
Q Consensus 296 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 375 (499)
.. .-....-.+.-.+-..|+.++|++.|.++.. -+..+......+...|-...+..+|++++.+.... ++.|+.+
T Consensus 520 da--sc~ealfniglt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 520 DA--SCTEALFNIGLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred ch--HHHHHHHHhcccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 31 1122222233456678999999999977421 12345566677788888899999999999887765 5778899
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-H
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA-C 454 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 454 (499)
++-|...|-+.|+-..|.+.+-+--. -++-+..+...|...|....-+++++.+|++..- +.|+..-|..++..| .
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHH
Confidence 99999999999999999887655432 2445788888899999999999999999998754 589999999988765 5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCCc
Q 010853 455 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDF 495 (499)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 495 (499)
+.|++.+|.++++...+. ++-|..+...|++.++..|-..
T Consensus 672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 689999999999998653 7778999999999999888643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-15 Score=144.56 Aligned_cols=414 Identities=12% Similarity=0.043 Sum_probs=301.7
Q ss_pred hhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 19 VASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
+..++.++...|+.++|+..+++..... +.+......+...+...|++++|.++++++++.-|. ++..+..++
T Consensus 71 v~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~------n~~~l~gLa 143 (822)
T PRK14574 71 VDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT------NPDLISGMI 143 (822)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHH
Confidence 4466777789999999999999998321 122333333466888899999999999998876544 345666788
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChh
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 178 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 178 (499)
..+...++.++|++.++.+....+ +...+..++..+...++..+|++.++++.+.... +...+..+..++.+.|-..
T Consensus 144 ~~y~~~~q~~eAl~~l~~l~~~dp--~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 144 MTQADAGRGGVVLKQATELAERDP--TVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HHHhhcCCHHHHHHHHHHhcccCc--chHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcH
Confidence 899999999999999999988764 4445544555555566776799999999998433 5677788899999999999
Q ss_pred HHHHHHHHHHhCCCCCCcc------cHHHHHHHH---h--cCCC---HHHHHHHHHHHHhC-CCCCc-----hhhHHHHH
Q 010853 179 RAYQLLEEGIQFGYLPSEH------TYKVLVEGL---C--GESD---LEKARKVLQFMLSK-KDVDR-----TRICNIYL 238 (499)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~------~~~~l~~~~---~--~~~~---~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~ 238 (499)
.|+++..+-... +.+... ....+++.- . ...+ .+.|..-++.+... +..|. .....-.+
T Consensus 221 ~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl 299 (822)
T PRK14574 221 PALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRL 299 (822)
T ss_pred HHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 999887653211 111100 011111110 0 1122 34455555555532 12232 22344567
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----CCCCHHHHHHHHHHHHc
Q 010853 239 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF----CAPDAVTFTTIIFGLLN 314 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 314 (499)
-++...++..++.+.++.+...+.+....+-..+.++|...+++++|+.+++.+..... .+++......|..++..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 78889999999999999999988766667888999999999999999999999976431 12344446789999999
Q ss_pred cCCHHHHHHHHHHHhccCCC----------CCch---hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHH
Q 010853 315 VGRIQEALNLLYQVMPQRGY----------SPGI---VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 381 (499)
Q Consensus 315 ~~~~~~a~~~~~~~~~~~~~----------~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 381 (499)
.+++++|..+++++...... .|+. ..+..++..+...|+..+|++.++++.... |-|......+..
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~ 458 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALAS 458 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 99999999999996642220 1221 234456677889999999999999998875 778999999999
Q ss_pred HHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 010853 382 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 447 (499)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (499)
.+...|.+.+|++.++.+....+. +..+....+.++...|++++|..+.+.+.+. .|+.....
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~ 521 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQ 521 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHH
Confidence 999999999999999887655333 5667788889999999999999999999886 44444333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-15 Score=127.10 Aligned_cols=428 Identities=16% Similarity=0.138 Sum_probs=274.0
Q ss_pred hhHHHHH--HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHh--ccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH
Q 010853 20 ASLTSAL--AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL--RTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 95 (499)
Q Consensus 20 ~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (499)
.+-+.++ ..+|.+.++.-+|+.|...|+..++..--.|++... ...++.-|. ++-|-.|...+.- ++.+
T Consensus 117 ~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E---~~~Fv~~~~~~E~--S~~s-- 189 (625)
T KOG4422|consen 117 ETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAE---WEEFVGMRNFGED--STSS-- 189 (625)
T ss_pred cchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchh---HHHHhhccccccc--cccc--
Confidence 3445555 788999999999999999998777777666665433 233333222 1222233322111 1111
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
.+.|.+.+ -+|+...+ ...++..+|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-..
T Consensus 190 ------WK~G~vAd--L~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~ 256 (625)
T KOG4422|consen 190 ------WKSGAVAD--LLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV 256 (625)
T ss_pred ------cccccHHH--HHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc
Confidence 12343333 34444443 235777788888887777888888877777766777778887776654332
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHH----HHHHHHHHhCCCCCchhhHHHHHHHHhccCChHH-H
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA----RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE-L 250 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a 250 (499)
+ .+++.+|....+.||..|+|.++.+..+.|+++.| .+++.+|.+-|+.|...+|..++..+++.+++.+ +
T Consensus 257 ~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 257 G----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred c----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 2 67777787777788888888888888888876654 4566667777888888888888888777777654 3
Q ss_pred HHHHHHHHhc----CC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCC---HHHHHHHHHHHHccC
Q 010853 251 LNVLVFMLQT----QC----QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK---FCAPD---AVTFTTIIFGLLNVG 316 (499)
Q Consensus 251 ~~~~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~---~~~~~~l~~~~~~~~ 316 (499)
..++.++... .+ +.|...|...+..|....+.+.|.++-.-+.... .+.|+ ..-|..+....++..
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 3344444321 12 2244556677777888888888887766554321 11222 334566677777777
Q ss_pred CHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC-Ch------
Q 010853 317 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN-QL------ 389 (499)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~------ 389 (499)
..+.-...|+.+. -.-+-|+..+...++++..-.|.++-.-+++..+...|...+......++..+++.. +.
T Consensus 413 s~~~~~~~Y~~lV-P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 413 SIDVTLKWYEDLV-PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHHhc-cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 8888888887754 445567777888888888888888888888888887775555554444444444433 11
Q ss_pred --------------hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHH---HHHH
Q 010853 390 --------------DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYN---VVID 451 (499)
Q Consensus 390 --------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~---~l~~ 451 (499)
+..+..-.++.+. .......+.+.-.+.+.|..++|.++|..+...+ --|-....+ -++.
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 1111111222333 3345567888888999999999999999986543 223333444 5666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC
Q 010853 452 GACKLSMKREAYQILREMRKNGL 474 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~ 474 (499)
.-.+.++...|..+++-|...+.
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCc
Confidence 67778889999999999876553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.9e-15 Score=124.94 Aligned_cols=363 Identities=14% Similarity=0.134 Sum_probs=242.3
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchh
Q 010853 48 LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 127 (499)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 127 (499)
+.+..++..+|.++++....++|.++|.+.- .. ....+..+||.+|.+-.-.. -.+++.+|......||..
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~----~~-k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHR----AA-KGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLF 274 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHH----Hh-hheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchH
Confidence 3467889999999999988999988665442 22 56678888888887644332 267888888888889999
Q ss_pred hHHHHHHHHHhcCChhh----HHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhH-HHHHHHHHHhC----CCCC----
Q 010853 128 ACGHMIDSLCRSGRNHG----ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR-AYQLLEEGIQF----GYLP---- 194 (499)
Q Consensus 128 ~~~~l~~~~~~~~~~~~----A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~~---- 194 (499)
++|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... .++|
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998765 56777888999999999999999998888877654 55555555432 2333
Q ss_pred CcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCC----CCc---hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHh
Q 010853 195 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD----VDR---TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 267 (499)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (499)
|...|...+..|.+..+.+.|.++..-+..... .++ ..-|..+....|.....+....+|+.|.-.-.-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 345567778888888888888888776654321 122 2245666777788888888888888888777777888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchh---hHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV---TYNAV 344 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l 344 (499)
+...++++..-.|.++-..+++.++..-+. +++..+ -++++.. +-.....|+.. -+...
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh------t~r~~l-----------~eeil~~-L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGH------TFRSDL-----------REEILML-LARDKLHPLTPEREQLQVA 496 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhh------hhhHHH-----------HHHHHHH-HhcCCCCCCChHHHHHHHH
Confidence 888888888888888888888888776442 121111 1122222 22222223222 22222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC-CCCCHHHHH---HHHHHHHh
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIHDNYVYA---AMIKGLCR 420 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~---~li~~~~~ 420 (499)
..-|+ ..-.+.....-.++.+. .......+.++-.+.+.|..++|.+++..+.+.+ -.|-....| .+++.-..
T Consensus 497 ~ak~a-ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 497 FAKCA-ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred HHHHH-HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 22221 11122222233344444 3455566777778899999999999999885443 333344445 45556667
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 010853 421 SGKIHEAVHFLYELVDSGVT 440 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~~~~ 440 (499)
.++...|...++-|...+..
T Consensus 574 ~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred cCCHHHHHHHHHHHHHcCch
Confidence 77888898888888766533
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-13 Score=121.08 Aligned_cols=455 Identities=11% Similarity=0.044 Sum_probs=240.6
Q ss_pred CChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHH
Q 010853 17 PPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 96 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (499)
|+.+.+=.+.......+.|+-++.+..+.- +-+.. |..++++...|+.|..++.+.-+.+ +-+...|.+
T Consensus 377 P~sv~LWKaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~i------ptd~~IWit 445 (913)
T KOG0495|consen 377 PRSVRLWKAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREII------PTDREIWIT 445 (913)
T ss_pred CchHHHHHHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhC------CCChhHHHH
Confidence 444444444444445555666666665541 12222 2333444455555655544443332 224455555
Q ss_pred HHHHHHcCCCHhHHHHHHHh----ccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHH
Q 010853 97 LVDSLCREGYVNEVFRIAED----MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS--LVSYNSIVHG 170 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~ 170 (499)
....--.+|+.+...+++++ +...|+..+...|..=...|-..|..-.+..+.......|+.-. -.||..-...
T Consensus 446 aa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 446 AAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHH
Confidence 55555556666555555443 34445555555555555555555555555555555555554421 2355555555
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHH
Q 010853 171 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 250 (499)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 250 (499)
|.+.+.++-|..+|....+. .+-+...|......--..|..+....+|++... ..+-....|......+-..|+...|
T Consensus 526 ~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~-~~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE-QCPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcchhHHHHHHHHHHhcCCcHHH
Confidence 66666666666666555442 112334444444444455555666666655553 2333344455555555555666666
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhc
Q 010853 251 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 330 (499)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 330 (499)
..++....+..+. +...|-.-+.......+++.|..+|.+.... .|+...|..-+..--..++.++|.+++++.++
T Consensus 604 r~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~---sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 604 RVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI---SGTERVWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc---CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 6666555555433 4455555555555555666666666555542 34555555444444455555666666555543
Q ss_pred cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHH
Q 010853 331 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 410 (499)
Q Consensus 331 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 410 (499)
.. +.-...|..+.+.+-+.++.+.|.+.|..-.+. ++-....|-.|...--+.|.+-+|+.++++..-.++. +...
T Consensus 680 ~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~l 755 (913)
T KOG0495|consen 680 SF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALL 755 (913)
T ss_pred hC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchh
Confidence 32 222334445555555555555555555544433 1222333444444444555555666666555544443 4555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------CCCCChhhHHHHHHHHHhcCChHH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVDS-----------------------------GVTPNIVCYNVVIDGACKLSMKRE 461 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~~-----------------------------~~~~~~~~~~~l~~~~~~~g~~~~ 461 (499)
|-..|+.-.+.|+.+.|..+..+.++. ...-|++..-.+...|-...++++
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH
Confidence 555555555555555555544443321 123355566666677777778888
Q ss_pred HHHHHHHHHHCCCCCC-HhHHHHHHHHhcccCCC
Q 010853 462 AYQILREMRKNGLNPD-AVTWRILDKLHGNRGND 494 (499)
Q Consensus 462 a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~ 494 (499)
|.+.|.+..+. .|| -.+|.-+.+.+.++|.+
T Consensus 836 ar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 836 AREWFERAVKK--DPDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHHHHHHHHcc--CCccchHHHHHHHHHHHhCCH
Confidence 88888888773 344 46777788888888754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-13 Score=116.53 Aligned_cols=425 Identities=13% Similarity=0.106 Sum_probs=283.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
..++++..|..+|++.+..+ ..++..|-..+.+-.++.....|+.++...+..+|.. | ..|.--+..--..|+
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-----d-qlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-----D-QLWYKYIYMEEMLGN 156 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-----H-HHHHHHHHHHHHhcc
Confidence 66788899999999999865 4677788888888889999999999888888777653 2 233334444456689
Q ss_pred HhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010853 107 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 186 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (499)
+.-|.++|++..+ ..|+..+|.+.|..-.+-+.++.|..+++...-. .|++.+|--..+.-.++|+...|..+|+.
T Consensus 157 i~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 157 IAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999998765 4488899999999999999999999999988765 68888888888888888988888888887
Q ss_pred HHhC-CC-CCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhC---------------------------------------
Q 010853 187 GIQF-GY-LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK--------------------------------------- 225 (499)
Q Consensus 187 ~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------------------- 225 (499)
.++. |- ..+...+.+....-..+..++.|.-+|+-.+..
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 7653 10 011223333333333455566666555544421
Q ss_pred ----CCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHh-hHHHHHH--------HHHhcCCHHHHHHHHHHH
Q 010853 226 ----KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI-TLNTVIN--------GFCKMGRIEEALKVLNDM 292 (499)
Q Consensus 226 ----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~--------~~~~~~~~~~a~~~~~~~ 292 (499)
..+.+-.+|-.++..-...|+.+...++++.....-++.+.. .|...|- .-....+.+.+.++++..
T Consensus 313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 122333455555555556666666666666665543221111 1111111 112345666667777666
Q ss_pred hhCCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 293 VAGKFCAPDAVTFTTIIFGLL----NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
.+ .++....||..+--.|+ ++.+...|.+++-..+ |.-|...+|...|..-.+.+.++.+..+|++..+.+
T Consensus 393 l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 393 LD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred Hh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 65 22455556555544443 4667777777776643 556777788888877778888888888888888876
Q ss_pred CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 010853 369 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 447 (499)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (499)
+-+..+|......-...|+.+.|..+|+-++... .......|.+.|+.-...|.++.|..+++++++.. +....|.
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWi 544 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWI 544 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHH
Confidence 5577788877777778888888888888876432 22344467778887788888888888888888752 3334554
Q ss_pred HHHHHHH-----hcC-----------ChHHHHHHHHHHH
Q 010853 448 VVIDGAC-----KLS-----------MKREAYQILREMR 470 (499)
Q Consensus 448 ~l~~~~~-----~~g-----------~~~~a~~~~~~m~ 470 (499)
+...--. ..+ ....|..+|+++.
T Consensus 545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 4443222 222 4456777777653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-13 Score=123.85 Aligned_cols=433 Identities=14% Similarity=0.128 Sum_probs=282.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
.-.|+.++|.+++.++++.. +.+...|.+|...|-+.|+.+++......+ ..+ .+-|...|..+.....+.|+
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llA-AHL-----~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLA-AHL-----NPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHH-Hhc-----CCCChHHHHHHHHHHHhccc
Confidence 45599999999999999975 457889999999999999999997754222 111 22255788888899999999
Q ss_pred HhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH----HHHHHHHHccCChhHHHH
Q 010853 107 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY----NSIVHGLCKHGGCMRAYQ 182 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~----~~l~~~~~~~~~~~~a~~ 182 (499)
+++|.-.|.+..+..+ ++....---...|-+.|+...|...|.++.......|..-+ -.+++.+...++.+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999998887 34344444667889999999999999999887432222222 234566777777788888
Q ss_pred HHHHHHhC-CCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC---------------------------CchhhH
Q 010853 183 LLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV---------------------------DRTRIC 234 (499)
Q Consensus 183 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~~ 234 (499)
.++..... +-..+...++.++..+.+...++.+............. ++..+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 88877652 22345677888888888888888888877776541111 11112
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 010853 235 NIYLRALCLIKNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 235 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (499)
-.++-++...+..+....+...+.+.. +.-+...|..+..+|...|++..|+.+|..+..... .-+...|-.+..+|
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG-YQNAFVWYKLARCY 459 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-ccchhhhHHHHHHH
Confidence 122334444444455555555555544 333455677777778888888888888887776543 44566777777788
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhh--------CCCCcCHHhHHHHHHHHH
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG--------IGVVADSTTYAIVIDGLC 384 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~ 384 (499)
...|.+++|.+.|+..+...... .-.-..|-..+.+.|+.++|.+.+..+.. .+..|+..........+.
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~--~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDN--LDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCc--hhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 88888888888777766554222 22333455556777888888777777532 122333333334444455
Q ss_pred hcCChhhHHHHHHHHh---------------------------------------------------------------c
Q 010853 385 ESNQLDEAKRFWDDIV---------------------------------------------------------------W 401 (499)
Q Consensus 385 ~~g~~~~a~~~~~~~~---------------------------------------------------------------~ 401 (499)
..|+.++=..+...++ .
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 5555443222211110 0
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 402 PSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGV--TPNI---VCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 402 ~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.+...+. ..+..++.++++.+++++|..+...+..... .++. ..=...+.+.+..+++..|...++.|..
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0111111 1345667788889999999999888876532 1111 1223455667788999999999988865
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-13 Score=124.93 Aligned_cols=351 Identities=13% Similarity=0.113 Sum_probs=220.0
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHH
Q 010853 138 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 217 (499)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 217 (499)
..|++++|.+++.+..+.... +...|.+|..+|-..|+.+++...+-..-..+ +-|...|..+.....+.|+++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 336777777777776666433 55666677777777776666666554432221 2244566666666666677777777
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHHh
Q 010853 218 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL----NTVINGFCKMGRIEEALKVLNDMV 293 (499)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 293 (499)
+|.+.++. .+++...+---...|-+.|+...|..-+.++.+..++.|..-+ ..+++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77766643 3333444444555666667777777776666665442222222 223444555566666666666665
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhc--------------------------cCCCCCchhhHHHHHHH
Q 010853 294 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP--------------------------QRGYSPGIVTYNAVLRG 347 (499)
Q Consensus 294 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~ll~~ 347 (499)
.......+...++.++..+.+...++.+...+..... ..+..++... -.++-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 5333244455556666666666666666665544322 0111222222 123334
Q ss_pred HHhcCCHHHHHHHHHHHhhCCC--CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGV--VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 425 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (499)
+.+.+..+....+...+.+..+ .-+...|.-+..+|...|++.+|..++..+......-+..+|-.+.++|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 5566666677777777776663 34566788899999999999999999999987666667788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH--------HCCCCCCHhHHHHHHHHhcccCC
Q 010853 426 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR--------KNGLNPDAVTWRILDKLHGNRGN 493 (499)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~l~~~~~~~g~ 493 (499)
+|.+.++..+...+. +...-..|...+-+.|++++|.++++.+. ..+..|+....-.....+...|+
T Consensus 467 ~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 999999999886422 44555667777889999999999998864 22334444444444444444443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=140.04 Aligned_cols=262 Identities=17% Similarity=0.139 Sum_probs=104.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCC-CCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 010853 201 VLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 279 (499)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (499)
.+...+...|++++|.++++...... .+.+...|..+.......++++.|...++.+...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555666677777777775443333 2334445555555666667777777777777665433 45566666666 678
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 010853 280 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 359 (499)
Q Consensus 280 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 359 (499)
+++++|.++++..-+. .++...+..++..+.+.++++++.+++.+.......+.+...|..+...+.+.|+.++|..
T Consensus 91 ~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888776544 3456667777888888888888888888865444455677778888888888899999999
Q ss_pred HHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010853 360 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 439 (499)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 439 (499)
.+++..+.. |.|......++..+...|+.+++.++++...+.. ..|...+..+..+|...|++++|+..|++....+
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 998888864 4457778888888888888888888887776543 3355567888888888899999999998888764
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 440 TPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+.|+.....+..++...|+.++|.++.++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3377788888888888999999988887764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-12 Score=109.17 Aligned_cols=449 Identities=11% Similarity=0.034 Sum_probs=293.2
Q ss_pred ChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh--HHHHH-----------HHHhccCCHHHHHHHHHHHHHHhhhc
Q 010853 18 PVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLT--YSVLV-----------RGVLRTRDVERANVLMFKLWERMKEE 84 (499)
Q Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~ 84 (499)
+..++...+..+..++.|.-.++...+. .+.+. |...+ ........+..-...+..+-..+...
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s~---k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~~ 156 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKSK---KSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLESK 156 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcchH---HHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHHH
Confidence 4566777778888888888777766541 11111 11111 11111122222222222222222221
Q ss_pred -cCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 010853 85 -EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 163 (499)
Q Consensus 85 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~ 163 (499)
.+..-|...+....-.+.+.|..+.|...|......-+ ..|.+-+....-..+.+.+ ..+... ...|...
T Consensus 157 ~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P----~~W~AWleL~~lit~~e~~----~~l~~~-l~~~~h~ 227 (559)
T KOG1155|consen 157 HCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP----WFWSAWLELSELITDIEIL----SILVVG-LPSDMHW 227 (559)
T ss_pred HhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC----cchHHHHHHHHhhchHHHH----HHHHhc-CcccchH
Confidence 12333445445555556677777888777777654332 2333333322222222222 222211 1112221
Q ss_pred HH--HHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC---chhhHHHHH
Q 010853 164 YN--SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD---RTRICNIYL 238 (499)
Q Consensus 164 ~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~ 238 (499)
.. .+..++-...+.+++.+-.+.....|...+...-+....+.....|+++|+.+|+++.+. .+- +..+|+.++
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHHhHHH
Confidence 11 244566666788888888888888887655555555566667888999999999999865 332 334555554
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCH
Q 010853 239 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 318 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (499)
-.-..... +..+.+-...--+--+.|.-.+.+-|+-.++.++|...|+...+.+ +.....|+.+..-|....+.
T Consensus 307 Yv~~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 307 YVKNDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHHhhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhccc
Confidence 43222111 1111111111012234566778888899999999999999999876 56788899999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 010853 319 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 398 (499)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 398 (499)
..|++-+..+++-. +.|-..|-.+.++|.-.+.+.=|+-.|++..+.. +-|...|..|..+|.+.++.++|+..|..
T Consensus 381 ~AAi~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 381 HAAIESYRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHHHHHHHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999987655 6688899999999999999999999999999875 66889999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010853 399 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS----G-VTP-NIVCYNVVIDGACKLSMKREAYQILREMRKN 472 (499)
Q Consensus 399 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 472 (499)
....+.. +...+..|...|-+.++.++|...|++-++. | +.| .......|..-+.+.+++++|.........
T Consensus 458 ai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~- 535 (559)
T KOG1155|consen 458 AILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK- 535 (559)
T ss_pred HHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-
Confidence 9876644 6678999999999999999999998887652 3 222 222333356667889999999887776655
Q ss_pred CCCCCHhHHHHHHHHhccc
Q 010853 473 GLNPDAVTWRILDKLHGNR 491 (499)
Q Consensus 473 g~~p~~~~~~~l~~~~~~~ 491 (499)
| .+...--+.|++-+.+.
T Consensus 536 ~-~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 536 G-ETECEEAKALLREIRKI 553 (559)
T ss_pred C-CchHHHHHHHHHHHHHh
Confidence 3 67777777777766554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-11 Score=108.70 Aligned_cols=443 Identities=12% Similarity=0.020 Sum_probs=337.1
Q ss_pred CCChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH
Q 010853 16 FPPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 95 (499)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (499)
.|...-+-.+|++...++.|..++....+. ++.++.+|.+....--.+|+.+....+..+-+..+... ++..+...|-
T Consensus 406 cp~s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~n-gv~i~rdqWl 483 (913)
T KOG0495|consen 406 CPQSMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQAN-GVEINRDQWL 483 (913)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc-ceeecHHHHH
Confidence 344555666778889999999999999885 56688899998888888999999999888888888776 8889999898
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCC--chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVN--EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 173 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 173 (499)
.-...|-..|.+-.+..+......-|+.. -..+|..-...|.+.+.++-|..+|....+.-.. +...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHh
Confidence 88888888899888888888877666532 2457777788888899999999988888776322 55667777666667
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHH
Q 010853 174 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 253 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 253 (499)
.|..++...+|++.... ++-....|-.....+-..|+...|..++.+..+. .+.+..+|-..+........++.|..+
T Consensus 563 hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~-~pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA-NPNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-CCCcHHHHHHHHHHhhccccHHHHHHH
Confidence 78888888888888774 2334455666666777788888888888888754 333666888888888888888888888
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCC
Q 010853 254 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 333 (499)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 333 (499)
|.+.... .|+...|.--+....-.+..++|.+++++..+.. +.-...|-.+.+.+-+.++.+.|.+.|..-.+ .
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~ 714 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--K 714 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--c
Confidence 8877665 3466666666666666788888888888887753 33356677777888888888888888866432 2
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC-----------
Q 010853 334 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----------- 402 (499)
Q Consensus 334 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------- 402 (499)
++.....|..+...--+.|.+-+|..+++..+-.+ +-+...|-..|++-.+.|+.+.|..+..++.+.
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEa 793 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEA 793 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHH
Confidence 34445566666666667778888888888877765 557777888888888888888877766555321
Q ss_pred ------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 010853 403 ------------------SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 464 (499)
Q Consensus 403 ------------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 464 (499)
....|.++.-.+...|....++++|.+.|.+.++.+.. +..+|..+...+.++|.-+.-.+
T Consensus 794 I~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred HHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHH
Confidence 12346667777778888888999999999999987643 67899999999999999988899
Q ss_pred HHHHHHH
Q 010853 465 ILREMRK 471 (499)
Q Consensus 465 ~~~~m~~ 471 (499)
++.....
T Consensus 873 v~~~c~~ 879 (913)
T KOG0495|consen 873 VLKKCET 879 (913)
T ss_pred HHHHHhc
Confidence 9988775
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.6e-13 Score=120.67 Aligned_cols=253 Identities=11% Similarity=0.061 Sum_probs=152.5
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCchhhHH--HHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH
Q 010853 207 CGESDLEKARKVLQFMLSKKDVDRTRICN--IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 284 (499)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (499)
...|+++.+...+.++.+ ..|+..... .....+...|+++.|...++.+.+..+. +......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 455555566555555542 222222111 2234555556666666666665555433 45566666677777777777
Q ss_pred HHHHHHHHhhCCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 010853 285 ALKVLNDMVAGKFCAPDA------VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 358 (499)
Q Consensus 285 a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 358 (499)
|.+++..+.+.....+.. .+|..++.......+.+...+++.+.-. ..+.++.....+...+...|+.++|.
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 777777776655422221 1222333333333444455555544221 12345666667777777888888888
Q ss_pred HHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 359 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
.++.+..+. +++.... ++.+....++.+++.+..+...+..+. |...+..+.+.+.+.|++++|.+.|+.+.+.
T Consensus 284 ~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~- 357 (398)
T PRK10747 284 QIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ- 357 (398)
T ss_pred HHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 888777763 4444322 223334557778888888777765443 5566777788888888888888888888775
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 439 VTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 439 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.|+...+..+...+.+.|+.++|.+++++...
T Consensus 358 -~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 -RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57777777778888888888888888777643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-16 Score=135.26 Aligned_cols=259 Identities=16% Similarity=0.141 Sum_probs=60.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 209 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (499)
.+...+.+.|++++|+++++...... ...|...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555666666666666664433332 1223334444444555566666666666666554322 34445555544 456
Q ss_pred CCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 010853 210 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKV 288 (499)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 288 (499)
+++++|.+++....+.. +++..+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666655443221 233334444444455555555555554443321 123344444444555555555555555
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 289 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
+++..+.. +.|......++..+...|+.+++..++....... +.|+..+..+..++...|+.++|..++++..+..
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 55554432 2234444444555555555554444444332221 2233334444444555555555555555544432
Q ss_pred CCcCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 010853 369 VVADSTTYAIVIDGLCESNQLDEAKRFWDD 398 (499)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 398 (499)
+.|+.+...+..++...|+.++|.++.++
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -TT-HHHHHHHHHHHT--------------
T ss_pred -ccccccccccccccccccccccccccccc
Confidence 33444444445555555555555544443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-13 Score=123.07 Aligned_cols=288 Identities=11% Similarity=0.031 Sum_probs=147.2
Q ss_pred cCChhhHHHHHHHHHhcCCCCChh-hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcc--cHHHHHHHHhcCCCHHHH
Q 010853 139 SGRNHGASRVVYVMRKRGLTPSLV-SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH--TYKVLVEGLCGESDLEKA 215 (499)
Q Consensus 139 ~~~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a 215 (499)
.|+++.|.+.+....+. .|+.. .+-....+....|+++.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 45555555555544443 22222 22223344444555555555555544321 2222 122234444555555555
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHH-HHHHHH---HhcCCHHHHHHHHHH
Q 010853 216 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN-TVINGF---CKMGRIEEALKVLND 291 (499)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~ 291 (499)
...++.+.+. .+.++.+...+...+...|+++++.+.+..+.+.+.. +...+. .-..++ ...+..+...+.+..
T Consensus 173 l~~l~~l~~~-~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEM-APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5555555432 2333344555555555555555555555555555432 111111 111111 111222222223333
Q ss_pred HhhCCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhh---HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010853 292 MVAGKF--CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT---YNAVLRGLFRLRRVEEAKEVFNCMLG 366 (499)
Q Consensus 292 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (499)
+..... .+.+...+..+...+...|+.++|.+.+.+.++.. |+... ...........++.+.+.+.++...+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 222210 01356666777777777777777777777765443 22221 11111122334666777777777666
Q ss_pred CCCCcCH--HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 367 IGVVADS--TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 367 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 52 3344 556677777888888888888888543334456777777788888888888888888777543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-12 Score=121.29 Aligned_cols=292 Identities=13% Similarity=0.060 Sum_probs=202.9
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCccc-HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHH
Q 010853 172 CKHGGCMRAYQLLEEGIQFGYLPSEHT-YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 250 (499)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 250 (499)
...|+++.|.+.+.+..+. .|+... +-....+....|+.+.+.+.+.+..+....+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3589999999999887664 344333 3444667778899999999999886433222223344457888889999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHH----HHHHHHHccCCHHHHHHHHH
Q 010853 251 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT----TIIFGLLNVGRIQEALNLLY 326 (499)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~ 326 (499)
...++.+.+..+. +...+..+...+...|+++.|.+.+..+.+.+. .+...+. .........+..+++.+.+.
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999988754 667788889999999999999999999998763 2332221 11111122333333333343
Q ss_pred HHhccC--CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHh---HHHHHHHHHhcCChhhHHHHHHHHhc
Q 010853 327 QVMPQR--GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT---YAIVIDGLCESNQLDEAKRFWDDIVW 401 (499)
Q Consensus 327 ~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (499)
+..... ..+.+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 333222 112367778888888999999999999999998864 33331 11122223345778888888888876
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 402 PSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 402 ~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..+. |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5433 44 566788899999999999999999644444578888888999999999999999999988643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.9e-13 Score=121.61 Aligned_cols=283 Identities=11% Similarity=0.035 Sum_probs=151.8
Q ss_pred CCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHH--HHHHHHHccCChhHHH
Q 010853 104 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN--SIVHGLCKHGGCMRAY 181 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~~~~~~a~ 181 (499)
.|+++.|.+.+....+....| ...+.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 455555555555443322111 111222233335556666666666655544 33332222 2244555556666666
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchh-------hHHHHHHHHhccCChHHHHHHH
Q 010853 182 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR-------ICNIYLRALCLIKNPTELLNVL 254 (499)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 254 (499)
..++++.+.. +-+...+..+...|.+.|+++.|.+++..+.+....++.. .+..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666555533 1234455555555666666666666666655443332221 2222233333333444444555
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCC
Q 010853 255 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 334 (499)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 334 (499)
+.+.+.- +.+......+...+...|+.++|.+++++..+. .++.... ++.+....++.+++++.+++..+..
T Consensus 253 ~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-- 324 (398)
T PRK10747 253 KNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-- 324 (398)
T ss_pred HhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--
Confidence 4443321 235556666777777777777777777776653 3443211 2223334477777777776655443
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
+-|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334445666667777777777777777777764 4666776777777777777777777777654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-12 Score=110.83 Aligned_cols=418 Identities=12% Similarity=0.039 Sum_probs=281.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHH
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVLPN----SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS 100 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (499)
.+.+.+.+.+|++.|+-.+..-...+ ..+.+.+.-.+.+.|+++.|+.-|....+. .|+..+-..|+-+
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~-------~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE-------APNFIAALNLIIC 318 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh-------CccHHhhhhhhhh
Confidence 33677889999999988877532222 234555666788999999999988777653 3455555556667
Q ss_pred HHcCCCHhHHHHHHHhccCCCCCCchh--------hHHHHHHHHHh---------cCC--hhhHHHHHHHHHhcCCCCCh
Q 010853 101 LCREGYVNEVFRIAEDMPQGKSVNEEF--------ACGHMIDSLCR---------SGR--NHGASRVVYVMRKRGLTPSL 161 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~---------~~~--~~~A~~~~~~~~~~g~~p~~ 161 (499)
+..-|+.++..+.|..|......+|.. .-..|+.--.+ ..+ .++++-.--++..--+.|+-
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f 398 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF 398 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch
Confidence 777899999999999886543222211 11122222111 111 12222111222221223331
Q ss_pred hh---H----------H--------HHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHH--HHHHHHhcCCCHHHHHHH
Q 010853 162 VS---Y----------N--------SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK--VLVEGLCGESDLEKARKV 218 (499)
Q Consensus 162 ~~---~----------~--------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~ 218 (499)
.. | . .-..-+.++|+++.|.+++.-+.+..-+.-...-+ .++.......++..|..+
T Consensus 399 a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqy 478 (840)
T KOG2003|consen 399 AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQY 478 (840)
T ss_pred hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHH
Confidence 11 1 0 01234668899999999998776543222111112 233333345578888888
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 010853 219 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 298 (499)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 298 (499)
-+..+.. ..-++.....-.......|++++|.+.+++.+..........||. .-.+-..|++++|++.|-++..--
T Consensus 479 ad~aln~-dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il-- 554 (840)
T KOG2003|consen 479 ADIALNI-DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL-- 554 (840)
T ss_pred HHHHhcc-cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH--
Confidence 7777632 333333333334445668999999999999987644333334443 334567899999999998876432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHH
Q 010853 299 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 378 (499)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 378 (499)
..+......+.+.|-...+...|++++.+. ..-++.|+...+.+...|-+.|+-.+|.+.+-+--+. ++.+..+..-
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~--~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iew 631 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQA--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEW 631 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHH
Confidence 467778888899999999999999998663 3344667888899999999999999999887655443 4778899999
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 379 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL-CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
|...|....-++++..+|++.. -+.|+..-|..++..| .+.|++++|++++++.... ++-|..+...|++.+...|
T Consensus 632 l~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 9999999999999999999884 3688999998888655 5679999999999998765 4558889999999888777
Q ss_pred Ch
Q 010853 458 MK 459 (499)
Q Consensus 458 ~~ 459 (499)
..
T Consensus 709 l~ 710 (840)
T KOG2003|consen 709 LK 710 (840)
T ss_pred ch
Confidence 53
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-11 Score=103.38 Aligned_cols=418 Identities=10% Similarity=0.049 Sum_probs=249.0
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhH
Q 010853 50 NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 129 (499)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 129 (499)
+...|....+--..++++.+|+++++..+.. -..+...|.--+..-.+...+..|..++++....-+..| ..|
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdv------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlW 144 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDV------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLW 144 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHH
Confidence 4444555555555677888888877666542 233556677777888899999999999999876544333 355
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 010853 130 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 209 (499)
Q Consensus 130 ~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (499)
--.+.+--..|++..|.++|+...+- .|+...|++.+..-.+.+.++.|..+|+..+- +.|++.+|......-.+.
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhc
Confidence 55666667789999999999998876 89999999999999999999999999999876 459999999999999999
Q ss_pred CCHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCCHHHHH
Q 010853 210 SDLEKARKVLQFMLSK--KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD-VITLNTVINGFCKMGRIEEAL 286 (499)
Q Consensus 210 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 286 (499)
|+...+..+|+...+. +.......+......-.++..++.|.-+|...++.-++.. ...|..+...--+.|+.....
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 9999999999988753 1111223444444444456667777777766655432211 223333333333334433322
Q ss_pred HH--------HHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch--hhHHHH----HH-H---H
Q 010853 287 KV--------LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI--VTYNAV----LR-G---L 348 (499)
Q Consensus 287 ~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l----l~-~---~ 348 (499)
+. ++.+.+.+ +-|-.+|--.+..-...|+.+...++|++++. +++|-. ..|.-. |+ + -
T Consensus 301 d~Iv~KRk~qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYalyeE 376 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYALYEE 376 (677)
T ss_pred HHHhhhhhhHHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222222 33444555555555555555555555555432 223311 011100 00 1 1
Q ss_pred HhcCCHHHHHHHHHHHhhC------------------------------------CCCcCHHhHHHHHHHHHhcCChhhH
Q 010853 349 FRLRRVEEAKEVFNCMLGI------------------------------------GVVADSTTYAIVIDGLCESNQLDEA 392 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~a 392 (499)
....+.+.+.++|+...+. |..|...++...|..-.+.++++..
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHH
Confidence 1234445555555444331 3345555555555555556666666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 393 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..++++.+..++. +..+|......-...|+.+.|..+|.-.++.. .......|...|.--...|.++.|..+++++++
T Consensus 457 RkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 457 RKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 6666666555443 45556555555555666666666666555432 111123344444444456666666666666655
Q ss_pred CCCCCCHhHHHHHH
Q 010853 472 NGLNPDAVTWRILD 485 (499)
Q Consensus 472 ~g~~p~~~~~~~l~ 485 (499)
. .+....|-.+.
T Consensus 536 r--t~h~kvWisFA 547 (677)
T KOG1915|consen 536 R--TQHVKVWISFA 547 (677)
T ss_pred h--cccchHHHhHH
Confidence 2 23344554444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-12 Score=111.36 Aligned_cols=410 Identities=13% Similarity=0.049 Sum_probs=209.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC-HHhHHHHHHHHHcC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPN-SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFANLVDSLCRE 104 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 104 (499)
.++|++++|++.|.+.++. .|+ +..|.....+|...|++++..+-..+.++ +.|+ .-.+.....++-..
T Consensus 126 f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE-------l~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 126 FRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE-------LNPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh-------cCcHHHHHHHHHHHHHHhh
Confidence 7889999999999999986 477 78888999999999999988775444433 2333 22455555666777
Q ss_pred CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHH-HHhcC--CCCChhhHHHHHHHHHccCChhHHH
Q 010853 105 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV-MRKRG--LTPSLVSYNSIVHGLCKHGGCMRAY 181 (499)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~g--~~p~~~~~~~l~~~~~~~~~~~~a~ 181 (499)
|++++|+.=..-..-.+.-.+..+- .++.-..+ ..|..-.++ +.+.+ +-|+.....+....+...-.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~----- 266 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK----- 266 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc-----
Confidence 8888775322211111100111110 11111111 111111111 22121 23444444444433321100
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHh----c-CCCHHHHHHHHHHHHhC------CCCCch------hhHHHHHHHHhcc
Q 010853 182 QLLEEGIQFGYLPSEHTYKVLVEGLC----G-ESDLEKARKVLQFMLSK------KDVDRT------RICNIYLRALCLI 244 (499)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~-~~~~~~a~~~~~~~~~~------~~~~~~------~~~~~l~~~~~~~ 244 (499)
.....+.......+..++. . ...+..+...+.+-... ....+. .+.......+.-.
T Consensus 267 -------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 267 -------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred -------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 0000000011111111110 0 01122222222211100 000000 0111111222335
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 010853 245 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 324 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 324 (499)
|+.-.+..-|+........++. .|.-+..+|....+.++....|.+..+.+ +.++.+|..-.+.+.-.+++++|..-
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 6666666666666665443222 25556666777777777777777776655 44555666666666666777777777
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 325 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
|++...-. +-+...|-.+--+..+.+.++++...|++..+. ++.-+..|+.....+...++++.|.+.|+..+....
T Consensus 417 F~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 417 FQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 76644222 222334444444445666777777777777665 355566777777777777777777777776654322
Q ss_pred C-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 405 I-------HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 405 ~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
. +.+.+--.++..- -.+++..|..++.+..+.+++ ....|..|...-.+.|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 1111112222211 236777777777777766533 44566777777777777777777777654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-11 Score=104.93 Aligned_cols=366 Identities=12% Similarity=0.049 Sum_probs=260.3
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCc
Q 010853 46 GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 125 (499)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 125 (499)
+...|+..+......+.+.|....|+..+..++... +..-..|..|...+ .+.+.+..+...+.. .+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~------P~~W~AWleL~~li---t~~e~~~~l~~~l~~----~~ 225 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY------PWFWSAWLELSELI---TDIEILSILVVGLPS----DM 225 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC------CcchHHHHHHHHhh---chHHHHHHHHhcCcc----cc
Confidence 445666667777777888888999988776665432 22333444444333 233333222222211 11
Q ss_pred hhhH-HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCcccHHHH
Q 010853 126 EFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY--LPSEHTYKVL 202 (499)
Q Consensus 126 ~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 202 (499)
...- -.+..++......+++.+-.+.+...|..-+...-+....+.-...++++|+.+|+++.+... .-|..+|..+
T Consensus 226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~ 305 (559)
T KOG1155|consen 226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV 305 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence 1111 123455666668888888888888888776666556666667778999999999999988621 1156788877
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 203 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
+-.-..... ..++.+-...-..-.+.++..+..-|+-.++.++|...|+..++.++. ....|+.+..-|....+.
T Consensus 306 LYv~~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 306 LYVKNDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHHHhhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhccc
Confidence 744332222 223332222334455667888888899999999999999999988754 667899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 362 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 362 (499)
..|.+-++...+-. +.|-..|-.+.++|.-.+...-|+-.|++...-. +.|...|.+|..+|.+.++.++|+..|.
T Consensus 381 ~AAi~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 381 HAAIESYRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred HHHHHHHHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999998765 7899999999999999999999999998866444 5678999999999999999999999999
Q ss_pred HHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 363 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----SN-IH-DNYVYAAMIKGLCRSGKIHEAVHFLYEL 434 (499)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 434 (499)
.....| ..+...+..|...|-+.++.++|.+.+++.++. |. .+ ....--.|..-+.+.+++++|.......
T Consensus 457 rai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 457 RAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 999887 557788999999999999999999999877642 22 22 1122233556667777877776554443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-11 Score=104.98 Aligned_cols=293 Identities=14% Similarity=0.078 Sum_probs=210.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHH
Q 010853 174 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 253 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 253 (499)
.|+|..|+++..+-.+++-. ....|..-.++.-..|+.+.+-.++.++.+....++....-...+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 67777777777776665533 23345555566667778888888877776554455555666666777777888888877
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHH
Q 010853 254 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD------AVTFTTIIFGLLNVGRIQEALNLLYQ 327 (499)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~ 327 (499)
+.++.+.++. +.........+|.+.|++.....++..+.+.+...+. ..+|..+++-....+..+.-...+++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777777654 5667788888888888888888888888887753322 24566677666666666665556655
Q ss_pred HhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC
Q 010853 328 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 407 (499)
Q Consensus 328 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 407 (499)
.- ...+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+ -.+.+.++.+.-.+..+...+..+. +
T Consensus 255 ~p--r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 255 QP--RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred cc--HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 32 23344556666788888899999999999999888876555 2222 2456677777777777776644333 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 010853 408 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 477 (499)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 477 (499)
+..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++....-..|+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 578889999999999999999999977765 78899999999999999999999999988764333443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-11 Score=108.42 Aligned_cols=286 Identities=12% Similarity=0.047 Sum_probs=228.1
Q ss_pred CCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 010853 194 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 273 (499)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 273 (499)
-+......-.+-+...+++.+..++.+.+.+ ..++....+-.-|.++...|+..+...+-..+.+.-+. ...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle-~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLE-KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHh-hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHH
Confidence 3445555556667788999999999999985 46667777777788999999999998888888887544 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCC
Q 010853 274 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 353 (499)
Q Consensus 274 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 353 (499)
--|...|+..+|.+.|.+..... +.-...|-.....|.-.+..++|+..+..+-+-. +-...-+--+.--|.+.++
T Consensus 320 ~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhcc
Confidence 88999999999999999887654 3446788889999999999999999887653322 1122222234445888999
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC--CC----CCCHHHHHHHHHHHHhcCCHHHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP--SN----IHDNYVYAAMIKGLCRSGKIHEA 427 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~----~~~~~~~~~li~~~~~~g~~~~a 427 (499)
++.|.+.|.+..... |.|+..++-+.-.....+.+.+|..+|+..... .. ..-..+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999998864 667888888887778889999999999887611 01 11344688999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhc
Q 010853 428 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 489 (499)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 489 (499)
+..+++.+....+ +..++.++.-.|...|+++.|.+.|.+..- +.|+..+.+.+++.+.
T Consensus 475 I~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999999987543 888999999999999999999999999886 8899988888876553
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.9e-12 Score=102.53 Aligned_cols=224 Identities=18% Similarity=0.133 Sum_probs=101.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC--HHhHHHHHHHHHcCCC
Q 010853 29 TGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN--NAAFANLVDSLCREGY 106 (499)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 106 (499)
++++++|.++|-+|.+.+ +-+..+--+|.+.+-..|..++|+.++..+.+. ++...+ ......|..-|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHHHHHhhh
Confidence 444555666666665532 112233334555555566666665554444321 122111 1223334444555555
Q ss_pred HhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh----hHHHHHHHHHccCChhHHHH
Q 010853 107 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV----SYNSIVHGLCKHGGCMRAYQ 182 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~ 182 (499)
+|.|..+|..+.+.+. --..+...|+..|-...+|++|+++-+++.+.|.++... .|.-+...+....+++.|..
T Consensus 123 ~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 5555555555554332 222344445555555555555555555555553332211 23333344444445555555
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 010853 183 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 259 (499)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (499)
++.+..+.+. -.+..-..+.+.....|+++.|.+.++.+.+.+..--+.+...+..+|...|++++....+..+.+
T Consensus 202 ~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 202 LLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555444321 122233334444555555555555555554443333333344444444444444444444444333
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-12 Score=118.30 Aligned_cols=281 Identities=13% Similarity=0.081 Sum_probs=213.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHhccCChHHHHHH
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK--DVDRTRICNIYLRALCLIKNPTELLNV 253 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 253 (499)
+..+|...|.....+ +.-+..+...+..+|...+++++|+++|+.+.... ...+..+|...+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 467788888885443 33344667778889999999999999999886432 122344566655444321 12222
Q ss_pred H-HHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 254 L-VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 254 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
+ +.+.+.. +-.+.+|-++.++|.-+++.+.|++.|++..+.. +....+|+.+..-+.....++.|...|...+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 2 2222222 3467899999999999999999999999998764 45788999888888999999999999987653
Q ss_pred CCCCchhh---HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH
Q 010853 333 GYSPGIVT---YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 409 (499)
Q Consensus 333 ~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 409 (499)
.|+.. |-.+.-.|.+.++++.|+-.|++..+.+ +.+......+...+.+.|+.++|.++++++...+.+ |+.
T Consensus 484 ---~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 484 ---VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ---CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 34444 4456667889999999999999999976 567778888888999999999999999999877766 544
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 473 (499)
.--..+..+...+++++|++.++++++. .| +...|..+.+.|.+.|+.+.|+.-|--|.+..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 4445667777889999999999999886 44 45677788889999999999999998887743
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-11 Score=100.31 Aligned_cols=263 Identities=13% Similarity=0.081 Sum_probs=152.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCch---hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 010853 201 VLVEGLCGESDLEKARKVLQFMLSKKDVDRT---RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 277 (499)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (499)
.|.+.|-+.|..+.|+++.+.+.++...+.. ....-+.+-|...|-++.|+.+|..+.+.+- .-......|+..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHH
Confidence 3444444444444444444444433222211 1233334444455555555555555554331 13445566777777
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCC
Q 010853 278 KMGRIEEALKVLNDMVAGKFCAPD----AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 353 (499)
Q Consensus 278 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 353 (499)
...+|++|+++-+++.+.+. .+. ...|..+...+....+.+.|..++.+..... +..+..--.+.+.....|+
T Consensus 153 ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGD 229 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccc
Confidence 77777777777776665543 222 2345556666666777778888887766554 2233333345566777788
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 433 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 433 (499)
++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+....++. -..+...-....-.+.|..++.+
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHH
Confidence 8888888888887765555667777888888888888888888877765444333 33333333334445566666555
Q ss_pred HHHcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 010853 434 LVDSGVTPNIVCYNVVIDGACK---LSMKREAYQILREMRK 471 (499)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~ 471 (499)
-+.. +|+...+..++..-.. .|...+-+.+++.|..
T Consensus 308 Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 308 QLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5444 6777778877776543 3445555666666653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-11 Score=103.05 Aligned_cols=293 Identities=10% Similarity=0.015 Sum_probs=157.9
Q ss_pred CCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHH
Q 010853 104 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 183 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 183 (499)
.|+|.+|+++..+-.+.+..| ...|..-..+--+.|+.+.+-.++.+..+.-..++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777776666655555432 2344445555666677777777776666653344555566666666666666666666
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCC
Q 010853 184 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 263 (499)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 263 (499)
++++.+.+. -+........++|.+.|++.....++..+.+.+...+...-.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 666665442 244555666666667777777777666666655544432110
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHH
Q 010853 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (499)
....+|+.+++-....+..+.-...++.....- ..++..-.+++.-+.+.|+.++|.+++.+.++. +..|+ ...
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~ 300 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCR 300 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHH
Confidence 012234444544444444444444454444332 333444455555555666666666666554432 22222 111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 010853 344 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 423 (499)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (499)
.-.+.+.++.+.-++..++-.+.. +.++..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+
T Consensus 301 -~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 301 -LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGE 376 (400)
T ss_pred -HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCC
Confidence 112344455554444444443332 33345555666666666666666666665533 34556666666666666666
Q ss_pred HHHHHHHHHHHHH
Q 010853 424 IHEAVHFLYELVD 436 (499)
Q Consensus 424 ~~~a~~~~~~~~~ 436 (499)
..+|.+..++...
T Consensus 377 ~~~A~~~r~e~L~ 389 (400)
T COG3071 377 PEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666655543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-12 Score=115.53 Aligned_cols=290 Identities=11% Similarity=-0.002 Sum_probs=223.8
Q ss_pred ChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCcccHHHHHHHHhcCCCHHHHHH
Q 010853 141 RNHGASRVVYVMRKRGLTPS-LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY--LPSEHTYKVLVEGLCGESDLEKARK 217 (499)
Q Consensus 141 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 217 (499)
+..+|...|+.+..+ .+| ..+...+.++|...+++++|..+|+.+.+... .-+...|...+..+-+ +-+..
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 457899999996665 334 45666788999999999999999999877421 1256778887766533 22333
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 010853 218 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 297 (499)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 297 (499)
.+.+-+-...+..+.+|-.+..+|.-+++.+.|++.|++..+.... ...+|+.+..-+....++|.|...|+......
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 3333332445667889999999999999999999999998877532 67888888888999999999999999988432
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHH
Q 010853 298 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 377 (499)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 377 (499)
+.+-.+|--+...|.+.++++.|.-.|.++..-+ +-+.+....+...+.+.|+.++|+.++++..... +-|+..--
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 2333444556778999999999999998876544 4456667777788889999999999999998876 34555555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 443 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 443 (499)
.-+..+...+++++|...++++++.-+. +..+|..+...|.+.|+.+.|+.-|--+.+.+++++.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5566778899999999999999865433 6668889999999999999999999999887655543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-10 Score=95.41 Aligned_cols=427 Identities=12% Similarity=0.061 Sum_probs=257.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCC
Q 010853 26 LAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 105 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (499)
+....++..|+.+++.-...+-.-...+---+..++...|++++|...|.-+.+ .-.++...+-.|..+..-.|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~------~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN------KDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc------cCCCCcccchhHHHHHHHHH
Confidence 356788999999999887655333333444456677899999999998765543 12234445555777777789
Q ss_pred CHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010853 106 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 185 (499)
Q Consensus 106 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 185 (499)
.+.+|..+-....+.. ---..+++.--+.++-++-..+.+.+.+. ..--.+|.......-.+.+|+++|.
T Consensus 106 ~Y~eA~~~~~ka~k~p-----L~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTP-----LCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHhhCCCCh-----HHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999887775432 22233445555667766666665555542 2333344444444456889999999
Q ss_pred HHHhCCCCCCcccHHH-HHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCC--
Q 010853 186 EGIQFGYLPSEHTYKV-LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC-- 262 (499)
Q Consensus 186 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 262 (499)
.....+ |.-...+. +.-+|.+..-++.+.++++-.+. ..+.++...+..+....+.-+-..|++-...+.+.+-
T Consensus 176 rvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~-q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 176 RVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLR-QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH-hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 887654 34344443 34456778888888888887763 3444444555544444432222222222222221110
Q ss_pred ------------------------CC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHH----
Q 010853 263 ------------------------QP-----DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII---- 309 (499)
Q Consensus 263 ------------------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~---- 309 (499)
-| -+..--.++-.|.+.+++.+|..+.+++... .|-......+.
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt---tP~EyilKgvv~aal 329 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT---TPYEYILKGVVFAAL 329 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC---ChHHHHHHHHHHHHh
Confidence 00 0111233445577889999999888876521 23222222222
Q ss_pred -HHHHccCCHHHHHHHHHHHhccCCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC
Q 010853 310 -FGLLNVGRIQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 387 (499)
Q Consensus 310 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (499)
+-........-|.+.| ++.-..+..-|. .--..+..++.-..++++++..++.+...=...|...+ .+..+++..|
T Consensus 330 GQe~gSreHlKiAqqff-qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atg 407 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFF-QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATG 407 (557)
T ss_pred hhhcCcHHHHHHHHHHH-HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhc
Confidence 2222233344555544 334444433332 23345566666677889999888888776433344444 4788999999
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCChHHHHHH
Q 010853 388 QLDEAKRFWDDIVWPSNIHDNYVY-AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC-YNVVIDGACKLSMKREAYQI 465 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~ 465 (499)
++.+|+++|-.+....++ |..+| ..|.++|.+++.++.|++++-++-. +.+..+ ...+..-|.+.+.+--|.+.
T Consensus 408 ny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKA 483 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKA 483 (557)
T ss_pred ChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888655555 55666 5566899999999999988765532 222333 33445568888888888888
Q ss_pred HHHHHHCCCCCCHhHHH
Q 010853 466 LREMRKNGLNPDAVTWR 482 (499)
Q Consensus 466 ~~~m~~~g~~p~~~~~~ 482 (499)
|+.+.. ..|++..|.
T Consensus 484 Fd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 484 FDELEI--LDPTPENWE 498 (557)
T ss_pred hhHHHc--cCCCccccC
Confidence 888876 456655553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-08 Score=91.96 Aligned_cols=311 Identities=12% Similarity=0.130 Sum_probs=175.2
Q ss_pred CChhHHHHHHHHHHhCCCCCC------cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCc---hhhHHHHHHHHhccC
Q 010853 175 GGCMRAYQLLEEGIQFGYLPS------EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR---TRICNIYLRALCLIK 245 (499)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 245 (499)
|+..+-...|.+.++. +.|. ...|..+.+.|-..|+++.|..+|++..+-..+.- ..+|......=.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 3444445555554432 2231 23466677778888888888888888765433322 335555556666677
Q ss_pred ChHHHHHHHHHHHhcCCC-----------C------CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHH
Q 010853 246 NPTELLNVLVFMLQTQCQ-----------P------DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 308 (499)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 308 (499)
+++.|+++++....-... + +...|...++.--..|-++....+++.+.+.....|- .....
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~Ny 517 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIINY 517 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHH
Confidence 777787777655422111 1 2333455555555667777777888888776643333 22222
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCcCHHhHHHHH--HHH
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR---LRRVEEAKEVFNCMLGIGVVADSTTYAIVI--DGL 383 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~ 383 (499)
...+-.+.-++++.+.|++-+.-...+.-...|+..+.-+.+ ...++.|..+|++..+ |.+|...-+-.|+ ..-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 223445556788888887755443333233456665555543 2368999999999998 5565443222222 222
Q ss_pred HhcCChhhHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH---HHHHhcCC
Q 010853 384 CESNQLDEAKRFWDDIVWPSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI---DGACKLSM 458 (499)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~ 458 (499)
-+.|-...|..+++++... +.+.. ..||..|.--...=-+.....+|++.++. -|+...-...+ ..=.+.|.
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhh
Confidence 3467788888999887532 33222 26777765544443445566677777765 44544433322 23356777
Q ss_pred hHHHHHHHHHHHHCCCCC--CHhHHHHHHHHhcccCC
Q 010853 459 KREAYQILREMRKNGLNP--DAVTWRILDKLHGNRGN 493 (499)
Q Consensus 459 ~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~ 493 (499)
.+.|..++..-.+. ..| +...|...-.-=.++|+
T Consensus 674 idRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 674 IDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 88887777655432 222 34445544444444454
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-11 Score=112.65 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=50.6
Q ss_pred CCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHH
Q 010853 86 DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 165 (499)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~ 165 (499)
|+.||..||.++|..||..|+.+.|- +|.-|.-...+.....|+.++......++.+.+. .|...+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 66666666666666666666666665 6665555555445556666666666666655554 45666666
Q ss_pred HHHHHHHccCChhH
Q 010853 166 SIVHGLCKHGGCMR 179 (499)
Q Consensus 166 ~l~~~~~~~~~~~~ 179 (499)
.|..+|...||...
T Consensus 88 ~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHHhccchHH
Confidence 66666666666544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.5e-12 Score=115.90 Aligned_cols=248 Identities=18% Similarity=0.156 Sum_probs=117.0
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCC
Q 010853 184 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 263 (499)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 263 (499)
+..+...|+.|+..||..+|.-|+..|+++.|- +|..|..+..+.....++.++.+....++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 334444555555555555555555555555555 5555554444444555555555555555544433 3
Q ss_pred CCHhhHHHHHHHHHhcCCHHH-----------------------HHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHH
Q 010853 264 PDVITLNTVINGFCKMGRIEE-----------------------ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 320 (499)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~-----------------------a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (499)
|...+|..|..+|...||+.. ...++..+.-.+..-||..+ .+......|.++.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQ 157 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHH
Confidence 455555556666655555433 22233222221111222211 2222233344445
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 010853 321 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR-RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 399 (499)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 399 (499)
+++++..+-......|. ..+++-+.... .+++-..+.+...+ .|+..+|..++.+-..+|+.+.|..++.+|
T Consensus 158 llkll~~~Pvsa~~~p~----~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPF----QVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHhhCCcccccchH----HHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 54444331111101111 11233332222 22333333333322 356666666666666666666666666666
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 010853 400 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 456 (499)
Q Consensus 400 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (499)
.+.|+..+.+-|-.|+-+ .++..-+..+++-|.+.|+.|+..|+...+..+...
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 666665555555555444 455555555566666666666666666555555553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-08 Score=93.04 Aligned_cols=427 Identities=13% Similarity=0.073 Sum_probs=263.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
-..+++...++..+.+.+. .+-...+.....-.+...|+.++|.......+. +-.-+.+.|+.+.-.+....+
T Consensus 18 yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr------~d~~S~vCwHv~gl~~R~dK~ 90 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR------NDLKSHVCWHVLGLLQRSDKK 90 (700)
T ss_pred HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhc------cCcccchhHHHHHHHHhhhhh
Confidence 5667788888888888773 333455666666667778888888765443332 122245677777777778888
Q ss_pred HhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010853 107 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 186 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (499)
+++|++.|......+. .|...+.-+.-.-++.++++.....-..+.+.... ....|..+..++.-.|+...|..++++
T Consensus 91 Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998888877665 55666666666667778888777777776665221 345677777777788888888888888
Q ss_pred HHhCC-CCCCcccHHHHH------HHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 010853 187 GIQFG-YLPSEHTYKVLV------EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 259 (499)
Q Consensus 187 ~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (499)
..+.. -.|+...|.... ....+.|.++.|.+.+.... ..+......-..-...+.+.++.++|..++..++.
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e-~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE-KQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh-hHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 77654 245555554332 23456777777777776554 22333333444556677788888899988888887
Q ss_pred cCCCCCHhhHH-HHHHHHHhcCCHHHHH-HHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHH-HHHHHhccCCCCC
Q 010853 260 TQCQPDVITLN-TVINGFCKMGRIEEAL-KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN-LLYQVMPQRGYSP 336 (499)
Q Consensus 260 ~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~ 336 (499)
.. ||...|. .+..++.+-.+.-++. .+|....+.. |....-..+--.......+.+..+ ++...+ ..|+++
T Consensus 248 rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y---~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l-~Kg~p~ 321 (700)
T KOG1156|consen 248 RN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY---PRHECPRRLPLSVLNGEELKEIVDKYLRPLL-SKGVPS 321 (700)
T ss_pred hC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC---cccccchhccHHHhCcchhHHHHHHHHHHHh-hcCCCc
Confidence 74 4444444 4444443333333333 5565554432 222211111112222233333333 333333 555544
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHH----HHHhhCC----------CCcCHHh--HHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVF----NCMLGIG----------VVADSTT--YAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~----~~~~~~~----------~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
++..+...+-.....+-.+++. ..+...| -+|.... +..++..+-+.|+++.|...++..+
T Consensus 322 ---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 322 ---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred ---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 2333333332222111111111 1111111 1455444 4456788889999999999999997
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 010853 401 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 474 (499)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 474 (499)
...+. -+..|..=.+.+...|++++|..++++..+.+ .+|...-..-..-..++++.++|.++....-+.|.
T Consensus 399 dHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 DHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 65332 22355566688999999999999999999876 44665555677777889999999999999887764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-10 Score=99.31 Aligned_cols=200 Identities=12% Similarity=0.073 Sum_probs=121.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 345 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 345 (499)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+.+.+... +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 3444555556666666666666666655433 3345555556666666666666666666554332 22334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCC-CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGV-VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 424 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (499)
..+...|++++|...++...+... +.....+..+..++...|++++|...+++....... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 566666666666666666655321 123345555666677777777777777777654332 445666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 425 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 425 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
++|.+.+++..+.. +.+...+..+...+...|+.++|..+++.+..
T Consensus 186 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777776652 33455566666667777777777777776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-10 Score=98.95 Aligned_cols=203 Identities=10% Similarity=0.033 Sum_probs=163.3
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 010853 230 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 309 (499)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (499)
....+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 355777888899999999999999998887653 356777888889999999999999999888764 45667788888
Q ss_pred HHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCCh
Q 010853 310 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 389 (499)
Q Consensus 310 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (499)
..+...|++++|.+.+.+.+.....+.....+..+..++...|++++|...+.+..+.. +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 89999999999999999877543333344566677788889999999999999988764 44567788888899999999
Q ss_pred hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 390 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 390 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
++|...+++..... ..+...+..+...+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999987652 345666777888888899999999988877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.9e-10 Score=102.13 Aligned_cols=290 Identities=14% Similarity=0.080 Sum_probs=168.3
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh------cC
Q 010853 136 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC------GE 209 (499)
Q Consensus 136 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~ 209 (499)
+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |+...|...+..+. ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 34445555555555443322 11122333444445555555555555555555443 33333322222222 11
Q ss_pred CCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCh-HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 010853 210 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP-TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 288 (499)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 288 (499)
.+.+....+++++...- |.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|....+..-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 23455555555554221 2222222222222221222 2344455555666653 2455666666655555555555
Q ss_pred HHHHhhCC-------------CCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCC
Q 010853 289 LNDMVAGK-------------FCAPDA--VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 353 (499)
Q Consensus 289 ~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 353 (499)
+....... ..+|+. .++..+.+.|...|++++|+..+++.+... +..+..|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCC
Confidence 55543221 113444 345667888889999999999999888654 2235567777888999999
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH------HH--HHHHHHHHhcCCHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY------VY--AAMIKGLCRSGKIH 425 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g~~~ 425 (499)
+.+|.+.++..++.. .-|..+-+-.+..+.++|++++|..++....+.+..|-.. +| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999876 4577777788888899999999999999987666433221 22 44567888999999
Q ss_pred HHHHHHHHHHH
Q 010853 426 EAVHFLYELVD 436 (499)
Q Consensus 426 ~a~~~~~~~~~ 436 (499)
.|++.|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88887766553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-08 Score=87.38 Aligned_cols=226 Identities=15% Similarity=0.097 Sum_probs=138.0
Q ss_pred CChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHH
Q 010853 17 PPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 96 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (499)
++..+-......+|++++|.+...++...+ +.+...+.+=+-++.+.++|++|..+ ++.-. ....+..-+-.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~---~~~~~~~~~fE 84 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKL----IKKNG---ALLVINSFFFE 84 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcc---hhhhcchhhHH
Confidence 344555555589999999999999999975 45677788888899999999999753 33211 11112111112
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 176 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 176 (499)
-.-+.-+.+..++|+..++-... .+..+...-...+.+.|++++|+++|+.+.+.+.. .+...+.+-+..
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a-- 154 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLA-- 154 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHH--
Confidence 23344578999999999983332 22335555667788999999999999999887432 222222211100
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHH---HHHHhcCCCHHHHHHHHHHHHh-------CCCCCch-------hhHHHHHH
Q 010853 177 CMRAYQLLEEGIQFGYLPSEHTYKVL---VEGLCGESDLEKARKVLQFMLS-------KKDVDRT-------RICNIYLR 239 (499)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-------~~~~~l~~ 239 (499)
...+... +.+......| ..+|..+ ...++..|++..|+++++.... .+...+. .+-.-+..
T Consensus 155 ~~a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 155 VAAALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred HHHhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 0011111 0122222223 3344443 3455678999999999988721 1111111 12333455
Q ss_pred HHhccCChHHHHHHHHHHHhcCC
Q 010853 240 ALCLIKNPTELLNVLVFMLQTQC 262 (499)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~ 262 (499)
.+...|+.++|..++...++..+
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhcC
Confidence 66778999999999988887764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-10 Score=109.88 Aligned_cols=267 Identities=9% Similarity=-0.013 Sum_probs=176.7
Q ss_pred CcccHHHHHHHHh-----cCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh---------ccCChHHHHHHHHHHHhc
Q 010853 195 SEHTYKVLVEGLC-----GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---------LIKNPTELLNVLVFMLQT 260 (499)
Q Consensus 195 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~ 260 (499)
+...|...+.+.. ..+++++|..+|++..+. .+.....+..+..++. ..++.++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l-dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM-SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 3344445555431 123567888899888743 3333445555544433 234578899999888887
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhh
Q 010853 261 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 340 (499)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 340 (499)
.+. +...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++.+......+ ..
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~--~~ 408 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA--AA 408 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh--hh
Confidence 644 66777788888888999999999999988765 55677788888889999999999999988775543222 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...++++..... .+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhc
Confidence 3334445666788999999998887654233455567777888889999999999988754322 234445666667777
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010853 421 SGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 473 (499)
.| ++|...++++.+.. -.+....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47777777766531 12222222 33345556776666555 7776643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.9e-11 Score=98.64 Aligned_cols=235 Identities=14% Similarity=0.056 Sum_probs=191.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
-+-+.++|.+.|.+.+|.+.++..++.. |-+.||..|-+.|.+..+++.|+.++.+-.+.- +-|+....-+...+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHH
Confidence 3567789999999999999998888774 455677888999999999999999999888753 344444556777888
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHH
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 393 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 393 (499)
..++.++|.++|+..++.. +.++.....+...|.-.++++.|+..|+.+.+.|+ -++..|+.+.-+|.-.++++-+.
T Consensus 302 am~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 8899999999999887666 34556666777778888999999999999999995 58888999999999999999999
Q ss_pred HHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 394 RFWDDIVWPSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..|++....--.|+. .+|-.+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|+.++|..+++...+
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999988754443433 36777888888889999999999988877643 667888888888899999999999998876
Q ss_pred CCCCCCH
Q 010853 472 NGLNPDA 478 (499)
Q Consensus 472 ~g~~p~~ 478 (499)
+.|+.
T Consensus 458 --~~P~m 462 (478)
T KOG1129|consen 458 --VMPDM 462 (478)
T ss_pred --hCccc
Confidence 45553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-09 Score=94.91 Aligned_cols=401 Identities=12% Similarity=0.034 Sum_probs=234.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC-HHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHH
Q 010853 54 YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 132 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 132 (499)
+-...+-|.++|++++|+..|...++. .|+ +.-|.....+|...|++++..+--....+.++ .-+.++..-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l-------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P-~Y~KAl~RR 189 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL-------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP-DYVKALLRR 189 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc-------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc-HHHHHHHHH
Confidence 334556677888888888888777643 344 56677777888888888888877777766553 223344445
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH---------HHhC--CCCCCcccHHH
Q 010853 133 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE---------GIQF--GYLPSEHTYKV 201 (499)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~--~~~~~~~~~~~ 201 (499)
..++-..|++++|+.=. |-..++..+....-...+.+++.+ +.+. .+.|+.....+
T Consensus 190 A~A~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~s 256 (606)
T KOG0547|consen 190 ASAHEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIAS 256 (606)
T ss_pred HHHHHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 55666666666664311 111222222222212222222221 1111 12333333333
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc--cCChHHHHHHHHHHHhc---CCCC---C------Hh
Q 010853 202 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL--IKNPTELLNVLVFMLQT---QCQP---D------VI 267 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~---~~~~---~------~~ 267 (499)
....+...-.. .+...+...+...-. .++.+.. ...+.++.+.+.+-... .... | ..
T Consensus 257 yf~sF~~~~~~--------~~~~~~~ksDa~l~~-~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~ 327 (606)
T KOG0547|consen 257 YFGSFHADPKP--------LFDNKSDKSDAALAE-ALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAE 327 (606)
T ss_pred HHhhccccccc--------cccCCCccchhhHHH-HHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHH
Confidence 33332211000 000000000100000 0111111 11223333333221111 0111 1 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 347 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 347 (499)
+...-...+.-.|+.-.|..-|+...... +.+...|..+..+|....+.++....|.+...-..- ++.+|..-.+.
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--n~dvYyHRgQm 403 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE--NPDVYYHRGQM 403 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC--CCchhHhHHHH
Confidence 12222223445688899999999988765 333344888888999999999999999887655533 44567677777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 427 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 427 (499)
..-.+++++|..=|++.++.. +-+...|-.+.-+..+.+.++++...|++.+++- +.-+.+|+.....+..+++++.|
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHH
Confidence 778889999999999999875 4466677777777788999999999999998664 44777999999999999999999
Q ss_pred HHHHHHHHHcCCC-----CChhhH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhcccCC
Q 010853 428 VHFLYELVDSGVT-----PNIVCY--NVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHGNRGN 493 (499)
Q Consensus 428 ~~~~~~~~~~~~~-----~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 493 (499)
.+.|+..++.... .+...+ -.++ .+--.+++..|..++.+..+ +.|. ...|..|...-.+.|+
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhh
Confidence 9999999875322 122211 1222 12235889999999999987 4553 3566666655555544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-10 Score=110.36 Aligned_cols=251 Identities=11% Similarity=0.029 Sum_probs=162.4
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH---------ccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 010853 140 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC---------KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210 (499)
Q Consensus 140 ~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (499)
+.+++|.++|++..+.... +...|..+..++. ..+++++|...+++..+... -+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 4578888888888876322 3445555554443 22447888888888877542 25566777777788888
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010853 211 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 290 (499)
Q Consensus 211 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 290 (499)
++++|...+++..+. .+.+...+..+...+...|++++|...++...+..+. +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLL-SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 899999999888754 3445567777888888889999999999888877544 22233334445666788899999888
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-
Q 010853 291 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG- 368 (499)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 368 (499)
+...... +.+...+..+..++...|+.++|...+.+.... .|+ ....+.+...+...| +.|...++.+.+..
T Consensus 431 ~~l~~~~-p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 431 ELRSQHL-QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHhcc-ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 8775431 224555677777888899999999988775433 333 333444445556666 47777777665431
Q ss_pred CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 010853 369 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
-.+....+ +...+.-.|+.+.+... +++.+.+
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 11222222 33345556666666555 7766543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-07 Score=84.47 Aligned_cols=446 Identities=11% Similarity=0.098 Sum_probs=284.0
Q ss_pred hhhHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHH
Q 010853 19 VASLTSALAITGEMDVAYKVFDEMRHCG-VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 97 (499)
Q Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (499)
...|.+.+.++|++..-+..|++.+..= +.-...+|...+......+-++-+..+|++.+.-- +..-..-
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---------P~~~eey 175 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---------PEAREEY 175 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC---------HHHHHHH
Confidence 3556777789999999999999987642 11245678888888888888888888887776532 2334557
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCC------CCCchhhHHHHHHHHHhcCChhh---HHHHHHHHHhcCCCCCh--hhHHH
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGK------SVNEEFACGHMIDSLCRSGRNHG---ASRVVYVMRKRGLTPSL--VSYNS 166 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~g~~p~~--~~~~~ 166 (499)
+..+++.+++++|.+.+..+.... .+.+...|..+.+..++.-+.-. ...++..+..+ -+|. ..|++
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 888899999999999888876432 23455667777666666544332 33344444333 3343 46899
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC----------------------CHHHHHHHHHHHHh
Q 010853 167 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES----------------------DLEKARKVLQFMLS 224 (499)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~ 224 (499)
|.+.|.+.|.+++|..+|++.+..- .+..-|..+.++|+.-. +++-...-|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 9999999999999999999877642 34444555555554311 12222333333332
Q ss_pred CC-----------CCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCC------CHhhHHHHHHHHHhcCCHHHHHH
Q 010853 225 KK-----------DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP------DVITLNTVINGFCKMGRIEEALK 287 (499)
Q Consensus 225 ~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 287 (499)
.. .+.+...|..- .-...|+..+....+.+..+.- .| -...|..+.+.|-..|+++.|..
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 21 11111122221 1223466667777777666541 11 13457888899999999999999
Q ss_pred HHHHHhhCCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhccCC----------CCC------chhhHHHHHHH
Q 010853 288 VLNDMVAGKFCAPD----AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG----------YSP------GIVTYNAVLRG 347 (499)
Q Consensus 288 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~------~~~~~~~ll~~ 347 (499)
+|++..+... +. ..+|..-...=.+..+++.|++++.+...... .++ +...|...+..
T Consensus 409 ifeka~~V~y--~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 409 IFEKATKVPY--KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHhhcCCc--cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 9999987553 33 34455555566678889999998877532111 011 22335555555
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhc---CC
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGLCRS---GK 423 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~---g~ 423 (499)
--..|-++....+|+.+.+..+. ++.........+-...-++++.+++++-+..-..|+.. .|+..+.-+.+. -.
T Consensus 487 eEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 55678899999999999887654 33333333334555667889999998876555555554 788887776653 36
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHH--HHHHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHH
Q 010853 424 IHEAVHFLYELVDSGVTPNIVCYNVV--IDGACKLSMKREAYQILREMRKNGLNPD--AVTWRILD 485 (499)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~l~ 485 (499)
.+.|..+|++.++ |++|...-+--| ...=-+.|....|+.++++... ++++. -..|++.|
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 8999999999999 555543322222 2222346888889999998754 24443 24666666
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-12 Score=79.17 Aligned_cols=49 Identities=39% Similarity=0.700 Sum_probs=26.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhc
Q 010853 441 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 489 (499)
Q Consensus 441 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 489 (499)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=78.97 Aligned_cols=50 Identities=36% Similarity=0.818 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 010853 406 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455 (499)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (499)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988864
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.3e-08 Score=91.66 Aligned_cols=208 Identities=13% Similarity=0.026 Sum_probs=120.4
Q ss_pred CCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh-hhH
Q 010853 86 DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL-VSY 164 (499)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~ 164 (499)
.+..++..|..+.-++...|+++.+.+.|+.....-. .....|..+-..+...|.-..|..+++.-......|+. ..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 4556777777777778888888888888877654332 34456777777777777777777777766554323433 333
Q ss_pred HHHHHHHHc-cCChhHHHHHHHHHHhC--CC--CCCcccHHHHHHHHhc-----------CCCHHHHHHHHHHHHhCCCC
Q 010853 165 NSIVHGLCK-HGGCMRAYQLLEEGIQF--GY--LPSEHTYKVLVEGLCG-----------ESDLEKARKVLQFMLSKKDV 228 (499)
Q Consensus 165 ~~l~~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~~ 228 (499)
-..-..|.+ .+..++++..-.+.+.. +. ......|..+.-+|.. ...-.++.+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 333333433 45555555554444431 10 1122223333222221 112334555666665432 3
Q ss_pred CchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010853 229 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 295 (499)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 295 (499)
.|+.+...+.--|+..++.+.|.+..++..+-+..-+...|..+.-.+...+++.+|+.+.+.....
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3334444455556667777777777777777655557777777777777777777777777665543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-07 Score=80.84 Aligned_cols=297 Identities=12% Similarity=0.052 Sum_probs=209.3
Q ss_pred cCChhHHHHHHHHHHhC-CCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHH
Q 010853 174 HGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 252 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 252 (499)
.++...+.+.+-.+... -++-|+.....+...+...|+.++|+..|++.... .+........+.-.+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-NPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC-ChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 44444444444333322 34557788889999999999999999999988632 23333445555556677888888877
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 253 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
+...+....-. ....|-.-.......++++.|+.+-++..+.. +.+...+-.-...+...++.++|.-.|.....-.
T Consensus 288 L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 288 LMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 77776654311 22233333444556788999999988887755 4556666666677888999999998888754322
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH-HHHH-hcCChhhHHHHHHHHhcCCCCCCH-H
Q 010853 333 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI-DGLC-ESNQLDEAKRFWDDIVWPSNIHDN-Y 409 (499)
Q Consensus 333 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~ 409 (499)
+-+..+|..++.+|...|++.+|...-+...+. ++.+..+...+. ..|. ...--++|..++++.... .|+. .
T Consensus 365 --p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~ 439 (564)
T KOG1174|consen 365 --PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTP 439 (564)
T ss_pred --hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHH
Confidence 346789999999999999999998877766553 244666666552 3332 233457899999988654 3332 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-hHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA-VTWRI 483 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ 483 (499)
..+.+...+...|..++++.++++.... .||....+.|.+.+...+.+.+|.+.|....+ +.|+. .+...
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~G 510 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRG 510 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHH
Confidence 5567778888999999999999988775 78999999999999999999999999999887 45643 34433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-10 Score=95.21 Aligned_cols=231 Identities=15% Similarity=0.058 Sum_probs=192.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 010853 200 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 279 (499)
Q Consensus 200 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (499)
+.+.++|.+.|.+.+|.+.++..++ ..|-+.+|..+-+.|.+..+++.|+.++.+-++.-+ -|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHH
Confidence 5688999999999999999998874 456667889999999999999999999998887732 2444455677788889
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 010853 280 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 359 (499)
Q Consensus 280 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 359 (499)
++.++|.++++...+.. +.++.....+...|...++++-|+..|.+++ +.|+ -++..|+.+.-+|.-.++++-++.
T Consensus 304 ~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 99999999999999876 5678888888889999999999999999976 4444 356788888889999999999999
Q ss_pred HHHHHhhCCCCcC--HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 360 VFNCMLGIGVVAD--STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 360 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
-|......--.|+ ..+|..+.......||+..|.+.|+-....+.. ....++.|.-.-.+.|++++|..+++...+.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9998876544444 346777888888899999999999999876654 6778999998899999999999999988775
Q ss_pred C
Q 010853 438 G 438 (499)
Q Consensus 438 ~ 438 (499)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 3
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-07 Score=78.14 Aligned_cols=395 Identities=10% Similarity=-0.005 Sum_probs=226.6
Q ss_pred ChhhHHHHH-HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH-
Q 010853 18 PVASLTSAL-AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA- 95 (499)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~- 95 (499)
++..|+..+ .+.|++++|+.++..+.+.. .++...+-.|...+.-.|.+.+|.++..+. |++....
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----------~k~pL~~R 125 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA-----------PKTPLCIR 125 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC-----------CCChHHHH
Confidence 344555555 78899999999999988865 466667777877888889999997743221 2222222
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH-HHHHHHcc
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS-IVHGLCKH 174 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~ 174 (499)
.+.....+.++-++.....+.+...- .-..+|.......-.+.+|++++...... .|+-...|. +.-+|.+.
T Consensus 126 LlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKl 198 (557)
T KOG3785|consen 126 LLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKL 198 (557)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhc
Confidence 34445556677666666655554321 11223444444445677788888777665 344444443 33445566
Q ss_pred CChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHHhc--CCC---------------------------------HHHHHHH
Q 010853 175 GGCMRAYQLLEEGIQFGYLPSE-HTYKVLVEGLCG--ESD---------------------------------LEKARKV 218 (499)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--~~~---------------------------------~~~a~~~ 218 (499)
.-++-+.++++--.+. + ||. ...+..+....+ .|+ -+.|.++
T Consensus 199 DYydvsqevl~vYL~q-~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqV 276 (557)
T KOG3785|consen 199 DYYDVSQEVLKVYLRQ-F-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQV 276 (557)
T ss_pred chhhhHHHHHHHHHHh-C-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHh
Confidence 6566666666554442 2 332 222222211111 111 1222222
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHH-----HHHhcCCHHHHHHHHHHHh
Q 010853 219 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN-----GFCKMGRIEEALKVLNDMV 293 (499)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~ 293 (499)
+--+.+ .. +..--.++--|.+.++.++|..+..++.-. .|-......+.. -........-|.+.|.-.-
T Consensus 277 LP~L~~--~I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG 350 (557)
T KOG3785|consen 277 LPSLMK--HI--PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG 350 (557)
T ss_pred chHHHh--hC--hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc
Confidence 222110 11 123334555677889999999887765411 122222222211 1112223566777776655
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH
Q 010853 294 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 373 (499)
Q Consensus 294 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 373 (499)
.+.....+..--.++...+.-..++++.+-.+.. ++..-...|...|| +.++.+..|.+.+|+++|-.+....++.+.
T Consensus 351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS-i~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~ 428 (557)
T KOG3785|consen 351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS-IESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKI 428 (557)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhH
Confidence 4443222233344556666666778888887766 44444444555554 678888999999999999888766555444
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 446 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 446 (499)
.-...|.++|.+++.++.|+.++-++.. ..+..+ ...+..-|.+.+.+=-|-+.|+.+...+ |++..|
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcccc
Confidence 4445667899999999999888766532 223333 3444567888888888888888877664 444444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-09 Score=97.44 Aligned_cols=260 Identities=11% Similarity=0.088 Sum_probs=136.0
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-----CC
Q 010853 207 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM-----GR 281 (499)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~ 281 (499)
...|++++|++.++.-. ..+.............+.+.|+.++|..++..+++.++. |..-|..+..+..-. .+
T Consensus 15 ~e~g~~~~AL~~L~~~~-~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNE-KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHCCCHHHHHHHHHhhh-hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccccc
Confidence 44455555555554432 223333344444455555555555555555555555422 333333333333111 23
Q ss_pred HHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 010853 282 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 361 (499)
Q Consensus 282 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 361 (499)
.+...++++++.... |.......+.-.+.....+....+.|-...-..|+|+ +|+.+-..|......+-...++
T Consensus 93 ~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 93 VEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred HHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 455556666555432 3222222222222222223322222222222344433 3444444444333333334444
Q ss_pred HHHhhC----C----------CCcCH--HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010853 362 NCMLGI----G----------VVADS--TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 425 (499)
Q Consensus 362 ~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (499)
...... + -+|+. .++..+...|...|++++|..++++.++..+. .+..|..-.+.+-+.|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 433221 1 12333 24455566777788888888888888766543 4557777778888888888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 426 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
+|.+.++..+..+.. |...-+..+..+.+.|+.++|.+++....+.+..|
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 888888888877644 66677777777888888888888888776655433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-08 Score=88.32 Aligned_cols=284 Identities=10% Similarity=-0.013 Sum_probs=165.1
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 010853 160 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 239 (499)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 239 (499)
++.....-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+...+=.++.+ ..+..+.+|-.+.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD-LYPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHH-hCCCCCcchhhHHH
Confidence 34444444455555666677777666665532 34455555555566666666666666666653 34444556666666
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHH
Q 010853 240 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 319 (499)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (499)
-|...|+..+|.+.|.+....... =...|-.+...|+-.|..+.|...+....+-- +-...-+--+.--|.+.++..
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhccHH
Confidence 666667777777777655443322 23356666666777777777776666554421 111112222334466667777
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C--CCcCHHhHHHHHHHHHhcCChhhHH
Q 010853 320 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----G--VVADSTTYAIVIDGLCESNQLDEAK 393 (499)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~ 393 (499)
.|.+.|.+.+... +.|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+++|.
T Consensus 398 LAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 7777776654333 334555555554555566777777777665521 0 0012234666777777777777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 394 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
..++.......+ +..++.++.-.|...|+++.|++.|.+.... .|+..+-..++..+
T Consensus 476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 777777655443 6667777777777777777777777776543 56655555555433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-07 Score=78.51 Aligned_cols=298 Identities=12% Similarity=0.065 Sum_probs=214.4
Q ss_pred HHHHHHh--cCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHHh
Q 010853 132 MIDSLCR--SGRNHGASRVVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE-HTYKVLVEGLC 207 (499)
Q Consensus 132 l~~~~~~--~~~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 207 (499)
-+.+++. .++...|...+-.+.... +.-|+.....+.+++...|+.++|...|++.... .|+. .......-.+.
T Consensus 200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~ 277 (564)
T KOG1174|consen 200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG 277 (564)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH
Confidence 3444433 445555555554444433 3446777889999999999999999999987663 3332 22222333456
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 010853 208 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 287 (499)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 287 (499)
..|+++....+...+.... .-...-|-.-+..+...+++..|+.+-++..+.... +...|..-...+...+++++|.-
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred hccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHH
Confidence 7889999888888887432 223334444555666788899999999888876543 55556555677888999999999
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH-HHH-HhcCCHHHHHHHHHHHh
Q 010853 288 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL-RGL-FRLRRVEEAKEVFNCML 365 (499)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll-~~~-~~~~~~~~a~~~~~~~~ 365 (499)
.|+...... +-+...|.-++.+|...|.+.+|.-+-...++.. +.+..+...+. ..| ....--++|..++++..
T Consensus 356 aFR~Aq~La--p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 356 AFRTAQMLA--PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHhcc--hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 999887654 5688999999999999999999988777766543 33444443331 122 22334588999999888
Q ss_pred hCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010853 366 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 440 (499)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 440 (499)
+.. +.-....+.+...|...|..+.+..+++.... ..||....+.|.+.+...+.+++|.+.|......++.
T Consensus 432 ~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 432 KIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred ccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 753 22345677888899999999999999999865 3678889999999999999999999999998876533
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-07 Score=84.59 Aligned_cols=391 Identities=13% Similarity=0.074 Sum_probs=255.2
Q ss_pred HhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcC
Q 010853 61 VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 140 (499)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 140 (499)
|...+++.....+...++.+.++. ..+.....-.+...|+-++|......-...++ .+.+.|..+.-.+....
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eH------geslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEH------GESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCcc------chhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhh
Confidence 346788999999888888866554 23444445556778999999999888877655 56678888888888889
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHHhcCCCHHHHHHHH
Q 010853 141 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP-SEHTYKVLVEGLCGESDLEKARKVL 219 (499)
Q Consensus 141 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 219 (499)
++++|++.|......+.. |...|.-+.-.-+..++++..........+. .| ....|..++.++.-.|+...|..++
T Consensus 90 ~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987543 6677776666666778888877777776663 34 4456788888888999999999999
Q ss_pred HHHHhCCC-CCchhhHHHH------HHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 220 QFMLSKKD-VDRTRICNIY------LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 292 (499)
Q Consensus 220 ~~~~~~~~-~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 292 (499)
+...+... .|+...+... .......|..+.|.+.+......-+. ....-..-...+.+.+++++|..++..+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 99986653 4554444332 34455678888888887665543221 2222344566788899999999999999
Q ss_pred hhCCCCCCCHHHHHHHH-HHHHccCCHHHHH-HHHHHHhccCCCCCchhhHHHH-HHHHHhcCCHHHHHHHHHHHhhCCC
Q 010853 293 VAGKFCAPDAVTFTTII-FGLLNVGRIQEAL-NLLYQVMPQRGYSPGIVTYNAV-LRGLFRLRRVEEAKEVFNCMLGIGV 369 (499)
Q Consensus 293 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~ 369 (499)
... .||...|...+ .++.+-.+..++. .+|.. .... .|....-..+ +.......-.+..-.++..+.+.|+
T Consensus 246 l~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~-ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 246 LER---NPDNLDYYEGLEKALGKIKDMLEALKALYAI-LSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred Hhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH-Hhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 986 46666655544 4444444445555 44443 2222 2222111111 1111122234455667777788887
Q ss_pred CcCHHhHHHHHHHHHhcCChhhHHHHH----HHHhcC----------CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHH
Q 010853 370 VADSTTYAIVIDGLCESNQLDEAKRFW----DDIVWP----------SNIHDNYVY--AAMIKGLCRSGKIHEAVHFLYE 433 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~----------~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~ 433 (499)
++-. ..+...|-.....+-.+++. ..+... .-.|....| -.++..+-+.|+++.|..+++.
T Consensus 320 p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6533 33333332222211111111 111111 013444444 4567788899999999999999
Q ss_pred HHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010853 434 LVDSGVTPNIV-CYNVVIDGACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 434 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 473 (499)
.+++ .|+.. .|..=.+.+.+.|+.++|..++++..+..
T Consensus 397 AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 397 AIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred Hhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 9887 55543 45555678999999999999999998743
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-07 Score=85.90 Aligned_cols=429 Identities=13% Similarity=-0.004 Sum_probs=279.8
Q ss_pred hcCChHHHHHH----HHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHc
Q 010853 28 ITGEMDVAYKV----FDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 103 (499)
Q Consensus 28 ~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (499)
-....+++... +.++....+.-++..|..+.-+....|+++.+.+.|++... ..--..+.|+.+...+..
T Consensus 296 ~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~------~~~~~~e~w~~~als~sa 369 (799)
T KOG4162|consen 296 PRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP------FSFGEHERWYQLALSYSA 369 (799)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------hhhhhHHHHHHHHHHHHH
Confidence 33444555433 23333334456888899999999999999999887766543 223356788889999999
Q ss_pred CCCHhHHHHHHHhccCCCCCC-chhhHHHHHHHHHh-cCChhhHHHHHHHHHhc--CC--CCChhhHHHHHHHHHcc---
Q 010853 104 EGYVNEVFRIAEDMPQGKSVN-EEFACGHMIDSLCR-SGRNHGASRVVYVMRKR--GL--TPSLVSYNSIVHGLCKH--- 174 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~--g~--~p~~~~~~~l~~~~~~~--- 174 (499)
.|.-..|..+++........| +...+-..-..|.+ .+..++++++-.+.... +. ......|..+.-+|...
T Consensus 370 ag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~ 449 (799)
T KOG4162|consen 370 AGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ 449 (799)
T ss_pred hccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc
Confidence 999999999999876555333 34444433344443 46677777777666652 11 12344555555555432
Q ss_pred --------CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCC
Q 010853 175 --------GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 246 (499)
Q Consensus 175 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 246 (499)
....++++.+++.++.+. -|+.....+.--|+..++++.|.+..++..+-+...+...|..+...+...++
T Consensus 450 a~~~seR~~~h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 123567888888877543 24444444555678889999999999999988788889999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh--------------------------CCC-CC
Q 010853 247 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA--------------------------GKF-CA 299 (499)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~-~~ 299 (499)
+..|+.+.+.....-.. |-.....-+..-...++.++++.....+.. ... ..
T Consensus 529 ~~~Al~vvd~al~E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 529 LKEALDVVDAALEEFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred hHHHHHHHHHHHHHhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 99999999876654111 111111111122223444444433222211 000 01
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch--------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 010853 300 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI--------VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 371 (499)
Q Consensus 300 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 371 (499)
....++..+.......+ ..+. +...++...+.|.. ..|......+.+.+..++|...+.+..... +.
T Consensus 608 ~a~s~sr~ls~l~a~~~--~~~~--se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l 682 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQL--KSAG--SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PL 682 (799)
T ss_pred ccchhhHHHHHHHHhhh--hhcc--cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hh
Confidence 11223333322222111 1100 00112222223322 345666777888899999998888887753 55
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCChhhHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH--FLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l 449 (499)
....|......+...|..++|.+.|......++. ++.+..++..++.+.|+..-|.. ++..+.+.+.. +...|..+
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~L 760 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYL 760 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHH
Confidence 6677777778888999999999999998766544 55678999999999998877777 99999998744 88899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 010853 450 IDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 450 ~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
...+.+.|+.+.|.+.|+...+
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHh
Confidence 9999999999999999998876
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-08 Score=93.22 Aligned_cols=243 Identities=19% Similarity=0.149 Sum_probs=122.0
Q ss_pred ccHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc-----CC-C
Q 010853 197 HTYKVLVEGLCGESDLEKARKVLQFMLSK-------KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT-----QC-Q 263 (499)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~ 263 (499)
.+...+...|...|+++.|+.++++.+.. ..+.-....+.+...|...+++.+|..+|+++... |. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444566666666666666666655432 11111223444566677777777777777666542 11 1
Q ss_pred C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchh-hH
Q 010853 264 P-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV-TY 341 (499)
Q Consensus 264 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~ 341 (499)
| -..+++.|..+|.+.|++++|...++...+- +++.. ....|.+. .+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-----------------------------~~~~~--~~~~~~v~~~l 328 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-----------------------------YEKLL--GASHPEVAAQL 328 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-----------------------------HHHhh--ccChHHHHHHH
Confidence 1 2345666777788888887777777655431 10000 00011111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC-----CC--CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC----CCC---CC
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGI-----GV--VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----SNI---HD 407 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~---~~ 407 (499)
+.+...|...+++++|..+++...+. |. +.-..+++.|...|...|++++|++++++++.. +.. -.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 23333344444455444444433221 10 011345566666666666666666666655421 111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 408 NYVYAAMIKGLCRSGKIHEAVHFLYELVD----SGVT-P-NIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
...++.|...|.+.+++++|.++|.+... .|+. | ...+|..|...|...|++++|.++.+...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22455566666666666666666555332 2211 1 22456666666777777777766666553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-09 Score=95.99 Aligned_cols=187 Identities=23% Similarity=0.264 Sum_probs=122.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccC----CC-CC-chhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CcCH-H
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQR----GY-SP-GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-----GV-VADS-T 374 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~ 374 (499)
+...|...+++.+|..+|++++... |- .| -..+++.|..+|.+.|++++|...++...+. |. .|.. .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 4555566666666666665543211 11 11 1234555555666777766666665554321 11 1222 2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhc---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVW---PSNIHD----NYVYAAMIKGLCRSGKIHEAVHFLYELVDS-----G-VTP 441 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~~ 441 (499)
.++.+...|...++++.|..+++...+ .-+.++ ..+++.|...|...|++++|.+++++++.. | ..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 456677788899999999999887642 112222 348999999999999999999999998753 1 122
Q ss_pred -ChhhHHHHHHHHHhcCChHHHHHHHHHHH----HCCC-CCC-HhHHHHHHHHhcccCCC
Q 010853 442 -NIVCYNVVIDGACKLSMKREAYQILREMR----KNGL-NPD-AVTWRILDKLHGNRGND 494 (499)
Q Consensus 442 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~g~-~p~-~~~~~~l~~~~~~~g~~ 494 (499)
....++.+...|.+.+++.+|.++|.+.. ..|. .|+ ..+|..|..+|.+.|+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~ 466 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNY 466 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccH
Confidence 24578889999999999999999998854 3332 123 46888999999999984
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-08 Score=78.38 Aligned_cols=185 Identities=11% Similarity=0.028 Sum_probs=77.8
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHH
Q 010853 241 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 320 (499)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (499)
|...|+...|..-+++.++..+. +..+|..+...|.+.|+.+.|.+.|++..... +.+....|....-+|..|++++
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhCCChHH
Confidence 33344444444444444333221 33344444444444444444444444444432 2333444444444444444444
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 321 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
|...|.+.+......--..+|..+.-+..+.|+++.|...|++..+.. +-...+.-.+.....+.|++-.|...++...
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 444444444333222223344444444444444444444444444432 2223333344444444444444444444444
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010853 401 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 430 (499)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 430 (499)
..+. ++..+.-..|+.-...|+.+.+-++
T Consensus 201 ~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 201 QRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred hccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 3332 3444444444444444444444333
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-09 Score=90.44 Aligned_cols=223 Identities=14% Similarity=0.151 Sum_probs=126.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (499)
....+.+++...|+.+.++ .++.... .|.......+...+...++-+.+..-+++.........+..........+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3334445555555544332 2222222 44555444444444333445555555554443332122333333334456
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----cCC
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQ 388 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 388 (499)
...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+.
T Consensus 113 ~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 6678888887766431 245556667777888888888888888887753 23 334444444432 335
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHH
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK-REAYQILR 467 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 467 (499)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++..+.+.. ++.++..++-+....|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 78888888887644 4457777788888888888888888888887765533 566777777777777777 56677777
Q ss_pred HHHH
Q 010853 468 EMRK 471 (499)
Q Consensus 468 ~m~~ 471 (499)
++.+
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 7765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.4e-07 Score=79.29 Aligned_cols=425 Identities=12% Similarity=0.054 Sum_probs=219.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC-HHhHHHHHHHHHc
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFANLVDSLCR 103 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 103 (499)
+....|+++.|+..|-+.+... ++|++.|+.-..+++..|++++|..=..+.. ...|+ +-.|+....++.-
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~-------~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTR-------RLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHH-------hcCCchhhHHHHhHHHHHh
Confidence 3478899999999999999876 4589999999999999999999976332222 23333 3478888888889
Q ss_pred CCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhh---HHHHHHHHHhc---CCCCChhhHHHHHHHHHccC--
Q 010853 104 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG---ASRVVYVMRKR---GLTPSLVSYNSIVHGLCKHG-- 175 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~~-- 175 (499)
.|++++|+..|.+-.+..+ .+...++.+..++.......+ --.++..+... ........|..++...-+..
T Consensus 83 lg~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred cccHHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 9999999999999888765 455666666666511100000 00011111100 00001112222222221110
Q ss_pred -----ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh-cCCCHH----HHHHHHHHHHh-CCCCCchhhHHHHHHHHhcc
Q 010853 176 -----GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC-GESDLE----KARKVLQFMLS-KKDVDRTRICNIYLRALCLI 244 (499)
Q Consensus 176 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~----~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 244 (499)
+.+...+..-.+...+. . .+...-.... ...... .......+..+ ........-...+..+..+.
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~--~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDE--L--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred hhcccccHHHHHHHHHHhcCcc--c--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 00011111100000000 0 0000000000 000000 00000000000 00000111244566777778
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHH-------HHHHHHHccCC
Q 010853 245 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT-------TIIFGLLNVGR 317 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~ 317 (499)
.+++.+.+-+....+.. .+..-++....+|...|.+..+...-++..+.+. -...-|+ .+..+|.+.++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHHh
Confidence 88888888888777765 3666667777788888888777777666655442 2222222 23445666778
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH-HhHHHHHHHHHhcCChhhHHHHH
Q 010853 318 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS-TTYAIVIDGLCESNQLDEAKRFW 396 (499)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~ 396 (499)
++.++..|.+.+.... .|+. ..+....+++........-.+ |.. .-...=...+.+.|++..|...|
T Consensus 314 ~~~ai~~~~kaLte~R-t~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHR-TPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHHHHHHHHHHhhhhc-CHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 8888888887654432 2222 112223333433333333222 111 11112244555666777777777
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 397 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 397 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
.++++..+. |...|....-+|.+.|.+..|++-.+..++.+ ++....|..=..++....++++|.+.|++.++ +.|
T Consensus 382 teAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp 457 (539)
T KOG0548|consen 382 TEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDP 457 (539)
T ss_pred HHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCc
Confidence 766665533 55666666666777777666666666655543 11233344434445555666666666666665 335
Q ss_pred CHhHHH
Q 010853 477 DAVTWR 482 (499)
Q Consensus 477 ~~~~~~ 482 (499)
+..-+.
T Consensus 458 ~~~e~~ 463 (539)
T KOG0548|consen 458 SNAEAI 463 (539)
T ss_pred hhHHHH
Confidence 444333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-07 Score=75.46 Aligned_cols=209 Identities=14% Similarity=0.056 Sum_probs=170.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 347 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 347 (499)
+...+.-.|...|+...|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++.+... +-+....|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHH
Confidence 45567778999999999999999999876 6678889999999999999999999999987655 3344566667777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCC-CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGV-VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 426 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 426 (499)
+|..|.+++|...|+.....-. ..-..+|..+.-+..+.|+.+.|...|++..+.... ...+...+.+.....|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 8899999999999999887522 223567888888889999999999999999877655 44567788899999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 427 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
|..+++.....+. ++..+....|+.-...|+.+.+.+.=..+.+ .-|...-+..+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 9999998887765 7888888888888889999888877766665 45666655544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.15 E-value=5e-07 Score=82.71 Aligned_cols=202 Identities=13% Similarity=0.080 Sum_probs=116.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch--hhHHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI--VTYNAVL 345 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll 345 (499)
....+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+.+.+......|+. ..|..+.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 33445566777888888888888887754 4556667777777888888888888887765443222332 2344566
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCC-CcCHHhH-H--HHHHHHHhcCChhhHHHH---HHHHhcCCC-CCCHHHHHHHHHH
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGV-VADSTTY-A--IVIDGLCESNQLDEAKRF---WDDIVWPSN-IHDNYVYAAMIKG 417 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~a~~~---~~~~~~~~~-~~~~~~~~~li~~ 417 (499)
..+...|++++|..++++...... .+..... + .++.-+...|....+.+. ......... ............+
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~ 273 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALA 273 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 677788888888888888754321 1111111 1 223333344433333332 111111100 1111222356677
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 418 LCRSGKIHEAVHFLYELVDSGVTP--------NIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+...|+.++|..+++.+......+ ..........++...|++++|.+.+.....
T Consensus 274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788889999999988887532210 111122223345678999999998888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-07 Score=77.66 Aligned_cols=351 Identities=14% Similarity=0.078 Sum_probs=215.2
Q ss_pred hhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH-HH
Q 010853 19 VASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA-NL 97 (499)
Q Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~l 97 (499)
..+....+.+..++.+|++++..-.++. +.+...++.|..+|-...++..|...|.++-...|+. .-|. --
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-------~qYrlY~ 84 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-------EQYRLYQ 84 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-------HHHHHHH
Confidence 4455556688899999999999888864 2377788999999999999999998887765544432 2222 13
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHH--HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI--DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
..++-+.+.+.+|+++...|.... +...-..-+ ......+++..+..+.+.....| +..+.+...-...+.|
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~---~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNP---ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCH---HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 456677889999999998887642 111111112 22345788888998888877542 4455555555566899
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhH----HHHHHHHhccCChHHHH
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC----NIYLRALCLIKNPTELL 251 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~ 251 (499)
+++.|.+-|+...+.+---....|+..+.. .+.|+++.|.+...++.++|+...+..- .-.+. ....|++..
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD-vrsvgNt~~-- 234 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID-VRSVGNTLV-- 234 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc-hhcccchHH--
Confidence 999999999988765433345667766544 4678999999999999887765433210 00000 000011100
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhcc
Q 010853 252 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 331 (499)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 331 (499)
|..++ =+..+|.-...+.+.|+++.|.+.+-+|..+.....|++|...+.-.-. .+++-+..+-+.-.+..
T Consensus 235 -----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 235 -----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ 305 (459)
T ss_pred -----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc
Confidence 00000 1223444455567889999999999998876655677887766543322 23333333333333444
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cCHHhHHHHHHHHHh-cCChhhHHHHHHHH
Q 010853 332 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCE-SNQLDEAKRFWDDI 399 (499)
Q Consensus 332 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~ 399 (499)
..++ ..||..++-.||+..-++.|-+++.+-...-.. .+...|+ |++++.. .-..+++.+-++.+
T Consensus 306 nPfP--~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 306 NPFP--PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred CCCC--hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 4333 357888888899998889888887654332111 2333333 3344433 34555665555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-07 Score=83.18 Aligned_cols=218 Identities=12% Similarity=-0.011 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHhCCC-CC--chhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 010853 210 SDLEKARKVLQFMLSKKD-VD--RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 286 (499)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 286 (499)
+..+.++.-+.+++.... .| ....|......+...|+.++|...|++..+..+. +...|+.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 345555555555553211 11 1234555555566666666666666666655432 4566667777777777777777
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010853 287 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 366 (499)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (499)
..|+...+.. +.+..++..+..++...|++++|.+.+++.+... |+..........+...+++++|...+.....
T Consensus 119 ~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7777766543 3345566666666667777777777776655433 2221111112223345567777777755443
Q ss_pred CCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhc---CCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 367 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW---PSNI---HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
.. .++... ..+ .....|+...+ ..++.+.+ ..+. .....|..+...+...|++++|...|++..+.+
T Consensus 194 ~~-~~~~~~-~~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWG-WNI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccH-HHH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 21 222211 122 22224444333 23333321 1110 122356666667777777777777777776654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.4e-08 Score=84.09 Aligned_cols=228 Identities=14% Similarity=-0.003 Sum_probs=159.4
Q ss_pred cCChHHHHHHHHHHHhcCC-CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHH
Q 010853 244 IKNPTELLNVLVFMLQTQC-QP--DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 320 (499)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (499)
.+..+.++.-+.+++.... .| ....|..+...|...|+.+.|...|++..+.. +.+...|+.+...+...|++++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHH
Confidence 3456677777777775422 22 24557778888999999999999999998865 5678999999999999999999
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 321 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
|...|.+.++.. +.+..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...+++..
T Consensus 117 A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 117 AYEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999977543 3345677788888899999999999999998864 333222222223445788999999997765
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 010853 401 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS---GVT---PNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 474 (499)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 474 (499)
... .++. |. ........|+..++ +.++.+.+. .+. .....|..+...+.+.|++++|...|++..+.+
T Consensus 193 ~~~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~- 266 (296)
T PRK11189 193 EKL-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN- 266 (296)
T ss_pred hhC-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 332 2232 22 12233345555444 344444421 111 123578899999999999999999999999854
Q ss_pred CCCHhHHHH
Q 010853 475 NPDAVTWRI 483 (499)
Q Consensus 475 ~p~~~~~~~ 483 (499)
.||..-+..
T Consensus 267 ~~~~~e~~~ 275 (296)
T PRK11189 267 VYNFVEHRY 275 (296)
T ss_pred CchHHHHHH
Confidence 346555554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.5e-07 Score=83.41 Aligned_cols=194 Identities=11% Similarity=0.038 Sum_probs=124.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCC
Q 010853 167 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 246 (499)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 246 (499)
.+.+......|.+|+.+++.++.... -...|..+...|+..|+++.|.++|.+.- .++..+..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34555667788888888888776432 34457778888888888888888886542 45667788888888
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010853 247 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 326 (499)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 326 (499)
|+.|.++-.+.. |+......|..-..-.-+.|++.+|.+++-.+. .|+. .+.+|-+.|..++.++++.
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHH
Confidence 888888776553 334455666666666777888888888776554 4543 4667788888888888776
Q ss_pred HHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHH
Q 010853 327 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 396 (499)
Q Consensus 327 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (499)
+..... -..|...+..-+-..|+...|++-|-+..+ |.+-+++|...+-++.|.++-
T Consensus 875 k~h~d~----l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 875 KHHGDH----LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HhChhh----hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 532111 122344455556666777777766654432 333444454555555544443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-06 Score=79.98 Aligned_cols=189 Identities=13% Similarity=0.036 Sum_probs=113.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChh---hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH---HHHHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSL---TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA---NLVDS 100 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~ 100 (499)
...|+.+.+.+.+....... +++.. ........+...|++++|...+.++++..|.+ ...+. .....
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~------~~a~~~~~~~~~~ 89 (355)
T cd05804 17 LLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD------LLALKLHLGAFGL 89 (355)
T ss_pred HhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHhHHHHHh
Confidence 45567777666666655432 12221 12223345567888888888877777654332 22222 11111
Q ss_pred HHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHH
Q 010853 101 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 180 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a 180 (499)
....+..+.+.+.++...... .........+...+...|++++|...+++..+.... +...+..+..++...|++++|
T Consensus 90 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 90 GDFSGMRDHVARVLPLWAPEN-PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred cccccCchhHHHHHhccCcCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHH
Confidence 223455556666665522211 122334444556777888888888888888877432 456677778888888888888
Q ss_pred HHHHHHHHhCCCC-CCc--ccHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010853 181 YQLLEEGIQFGYL-PSE--HTYKVLVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 181 ~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
...+++....... |+. ..|..+...+...|++++|..++++...
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8888877664321 121 2344677778888888888888888753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.8e-06 Score=87.28 Aligned_cols=374 Identities=11% Similarity=0.000 Sum_probs=221.2
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 176 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 176 (499)
....+...|++.+|............ -..............|+++.+..+++.+.......+..........+...|+
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~--~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQL--LRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHH--HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 34445556666666555444432110 0011111223345567777777776665322111233333444555567889
Q ss_pred hhHHHHHHHHHHhCCCC------CCc--ccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCch----hhHHHHHHHHhcc
Q 010853 177 CMRAYQLLEEGIQFGYL------PSE--HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT----RICNIYLRALCLI 244 (499)
Q Consensus 177 ~~~a~~~~~~~~~~~~~------~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 244 (499)
++++..++......--. +.. .....+...+...|+++.|...+++........+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 99999988876542110 111 11222334456789999999999987653111111 2345566667789
Q ss_pred CChHHHHHHHHHHHhcCC-----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CC-CHHHHHHHHHHHH
Q 010853 245 KNPTELLNVLVFMLQTQC-----QPDVITLNTVINGFCKMGRIEEALKVLNDMVAG----KFC-AP-DAVTFTTIIFGLL 313 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~~l~~~~~ 313 (499)
|++++|...+.+...... .....++..+...+...|+++.|...+++.... +.. .+ ....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 999999999887764311 111234455667788899999999988776542 110 01 2333445566677
Q ss_pred ccCCHHHHHHHHHHHhccCC-CCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcCHH--h--HHHHHHHHH
Q 010853 314 NVGRIQEALNLLYQVMPQRG-YSP--GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG--VVADST--T--YAIVIDGLC 384 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~l~~~~~ 384 (499)
..|++++|...+.+...... ..+ ....+..+.......|+++.|...+....... ...... . ....+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 78999999988877543211 111 23344445566778899999999988875421 111111 1 011224445
Q ss_pred hcCChhhHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhc
Q 010853 385 ESNQLDEAKRFWDDIVWPSNIHDN---YVYAAMIKGLCRSGKIHEAVHFLYELVDS----GVTPN-IVCYNVVIDGACKL 456 (499)
Q Consensus 385 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~ 456 (499)
..|+.+.|...+............ ..+..+..++...|++++|...+++.... |..++ ..+...+..++...
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 688999999998776542221111 12346677888899999999999888753 22222 23566677788899
Q ss_pred CChHHHHHHHHHHHHC
Q 010853 457 SMKREAYQILREMRKN 472 (499)
Q Consensus 457 g~~~~a~~~~~~m~~~ 472 (499)
|+.++|...+.+..+.
T Consensus 745 G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 745 GRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998763
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-08 Score=84.52 Aligned_cols=222 Identities=14% Similarity=0.068 Sum_probs=119.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCC-CCHhhHHHHHHHHH
Q 010853 199 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ-PDVITLNTVINGFC 277 (499)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 277 (499)
...+.+++...|+++.+. .++.. +..|.......+...+...++.+.+..-+.+....... .+..........+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~-~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKK-SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-T-TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhcc-CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 344455555555544322 23322 22344444444444443333344444444333322222 12222222234455
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh----cCC
Q 010853 278 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRR 353 (499)
Q Consensus 278 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~ 353 (499)
..|++++|+++++.. .+.......+..|.+.++++.|.+.++.+- +. ..| .+...+..++.. .+.
T Consensus 114 ~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~-~~--~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQ-QI--DED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH-CC--SCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH-hc--CCc-HHHHHHHHHHHHHHhCchh
Confidence 567777777766532 345555666777777777777777777632 22 223 233344444332 235
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI-HEAVHFLY 432 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~ 432 (499)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+.. +..+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 77888888887664 3567777777888888888888888888887765544 555666677777777766 56677777
Q ss_pred HHHHc
Q 010853 433 ELVDS 437 (499)
Q Consensus 433 ~~~~~ 437 (499)
++...
T Consensus 261 qL~~~ 265 (290)
T PF04733_consen 261 QLKQS 265 (290)
T ss_dssp HCHHH
T ss_pred HHHHh
Confidence 77765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-05 Score=71.80 Aligned_cols=387 Identities=11% Similarity=0.042 Sum_probs=207.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHH
Q 010853 54 YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 133 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 133 (499)
+-+=++.+...+++++|.....+++... +-+...+..-+-++.+.+++++|+.+.+.-..... .+...|. -.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fE-KA 86 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFE-KA 86 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHH-HH
Confidence 3344567788899999998877776532 23456677777788999999999977665432111 1111111 22
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHHhcCCCH
Q 010853 134 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP-SEHTYKVLVEGLCGESDL 212 (499)
Q Consensus 134 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 212 (499)
-+..+.+..++|+..++-.... +..+...-...+.+.|++++|+.+|+.+.+.+.+- +...-..++.+- --
T Consensus 87 Yc~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~ 158 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AA 158 (652)
T ss_pred HHHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----Hh
Confidence 3345789999999998833322 34466777788899999999999999998765422 111111122111 11
Q ss_pred HHHHHHHHHHHhCCCCC--chhhHHHHHHHHhccCChHHHHHHHHHHHhcCC-------CC------CHh-hHHHHHHHH
Q 010853 213 EKARKVLQFMLSKKDVD--RTRICNIYLRALCLIKNPTELLNVLVFMLQTQC-------QP------DVI-TLNTVINGF 276 (499)
Q Consensus 213 ~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~------~~~-~~~~l~~~~ 276 (499)
-.+. +.+.. ...| +...+....-.+...|++.+|+++++...+.+. .- ... .-..+.-.+
T Consensus 159 l~~~-~~q~v---~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 159 LQVQ-LLQSV---PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hhHH-HHHhc---cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 1111 22222 2222 222333344556678999999999988732211 00 011 112344456
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHH---HHHccCCHHH--HHHHHHHH-----------hccCCCCCchhh
Q 010853 277 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF---GLLNVGRIQE--ALNLLYQV-----------MPQRGYSPGIVT 340 (499)
Q Consensus 277 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~--a~~~~~~~-----------~~~~~~~~~~~~ 340 (499)
...|+.++|..++..+.+.. .+|........+ +.....++.+ ++..++.. +... ......
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~--qk~~i~ 310 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK--QKQAIY 310 (652)
T ss_pred HHhcchHHHHHHHHHHHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHH
Confidence 77899999999999998876 455432222211 1111111111 11111110 0000 001111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh--cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE--SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
.|..+-.+ ..+..+.+.++...+.. ..|.. .+..++..+.+ ......+..++...-+........+.-.++...
T Consensus 311 ~N~~lL~l-~tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 311 RNNALLAL-FTNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHH-HhhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11111111 12233344443333322 12332 33333333322 224667777777776555444455666677777
Q ss_pred HhcCCHHHHHHHHH--------HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 419 CRSGKIHEAVHFLY--------ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 419 ~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
...|+++.|.+++. .+.+.+..| .+...++..+.+.++.+.|..++.+..
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 88888888888888 444444333 455556666777776666666666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-07 Score=77.52 Aligned_cols=331 Identities=13% Similarity=0.079 Sum_probs=200.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHH-HHHH
Q 010853 127 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV-LVEG 205 (499)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 205 (499)
--+++.+..+.+..+++.|++++....++..+ +......|..+|....++..|-..|+++-.. .|...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 34667777788889999999999888877432 6777888888999999999999999988663 354444432 2445
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 010853 206 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 285 (499)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 285 (499)
+.+.+.+..|.++...|... ......+...-.......+++..+..++++....+ +..+.+...-...+.|+++.|
T Consensus 88 LY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 66778888888888887532 11111222222233345677777777776654322 344455555556778888888
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch-------------h--------hHHHH
Q 010853 286 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI-------------V--------TYNAV 344 (499)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~--------~~~~l 344 (499)
.+-|+...+-++ -.....|+..+ +..+.++++.|++...+++ +.|++..+ . .-+.+
T Consensus 164 vqkFqaAlqvsG-yqpllAYniAL-aHy~~~qyasALk~iSEIi-eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 164 VQKFQAALQVSG-YQPLLAYNLAL-AHYSSRQYASALKHISEII-ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHhhcC-CCchhHHHHHH-HHHhhhhHHHHHHHHHHHH-HhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 888888887766 34455666554 4446678888888887754 55654211 1 11223
Q ss_pred HHH-------HHhcCCHHHHHHHHHHHhhC-CCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 345 LRG-------LFRLRRVEEAKEVFNCMLGI-GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 345 l~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
+.+ +.+.|+++.|.+-+..|--+ ....|+.|...+.-.- ..+++....+-+.-+...++ ....||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 322 34567777777777777422 1234555555443221 23444444444555544444 34567777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHh-cCChHHHHHHHHHHH
Q 010853 417 GLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACK-LSMKREAYQILREMR 470 (499)
Q Consensus 417 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~ 470 (499)
.||++.-++-|-+++.+-...-. -.+...|+ |+.++.. .-..+++.+-++.+.
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888888888777654322111 11223333 3344433 345666666665553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-05 Score=75.66 Aligned_cols=400 Identities=12% Similarity=0.068 Sum_probs=196.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
-+.+++..-+..++.....|. -++.++|+|...|...++-.+- ++.. +..-| +..+.-||...+
T Consensus 849 EkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~------fLke-----N~yYD----s~vVGkYCEKRD 912 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER------FLKE-----NPYYD----SKVVGKYCEKRD 912 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH------hccc-----CCcch----hhHHhhhhcccC
Confidence 567778888888888888884 6888999999999987765543 2211 11112 224555666655
Q ss_pred HhHHHHHHHhccCC----CCCCchhhHHHHHHHHHhcCChhhHH-----------HHHHHHHhcCC--CCChhhHHHHHH
Q 010853 107 VNEVFRIAEDMPQG----KSVNEEFACGHMIDSLCRSGRNHGAS-----------RVVYVMRKRGL--TPSLVSYNSIVH 169 (499)
Q Consensus 107 ~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~-----------~~~~~~~~~g~--~p~~~~~~~l~~ 169 (499)
+--|.-.+++-.-. ++......|....+-+.+..+.+--. ++++.....++ ..|+.....-+.
T Consensus 913 P~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 913 PHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred CceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 54443333221100 11122234444445455555443322 33344444332 235566667778
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCC--CcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCh
Q 010853 170 GLCKHGGCMRAYQLLEEGIQFGYLP--SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 247 (499)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 247 (499)
++...+-..+-.+++++++-.+..- +...-+.++-.. -.-+..++.++.+++..- ..|+ +.......+-+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdny-Da~~------ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNY-DAPD------IAEIAIENQLY 1064 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccC-Cchh------HHHHHhhhhHH
Confidence 8888888888888888876432111 122223333332 333555566666665422 1221 12233334445
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010853 248 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 327 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 327 (499)
++|..+|+... .+....+.++. .-+..+.|.+.-++.. .+..|+.+..+-.+.|...+|++-|-+
T Consensus 1065 EEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1065 EEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred HHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 55555554431 22333333332 1233444444433322 223455555555555555555554432
Q ss_pred HhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC
Q 010853 328 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 407 (499)
Q Consensus 328 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 407 (499)
. .|+..|..++..+.+.|.+++....+...++..-.|.. -+.|+-+|++.++..+.++++. .||
T Consensus 1130 ---a----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN 1193 (1666)
T KOG0985|consen 1130 ---A----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPN 1193 (1666)
T ss_pred ---c----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCC
Confidence 1 24445555555555555555555555544444333322 2344445555555444433321 122
Q ss_pred HHH--------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 010853 408 NYV--------------------------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 461 (499)
Q Consensus 408 ~~~--------------------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 461 (499)
..- |..|...+...|+++.|.+.-++. .+..||..+-.+|...+.+.-
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhH
Confidence 223 444555555555555554443332 244566666666655544432
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhcccC
Q 010853 462 AYQILREMRKNGLNPDAVTWRILDKLHGNRG 492 (499)
Q Consensus 462 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 492 (499)
| +|.-..+.....-...|+..|...|
T Consensus 1268 A-----QiCGL~iivhadeLeeli~~Yq~rG 1293 (1666)
T KOG0985|consen 1268 A-----QICGLNIIVHADELEELIEYYQDRG 1293 (1666)
T ss_pred H-----HhcCceEEEehHhHHHHHHHHHhcC
Confidence 2 2333333444555556666665555
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-05 Score=82.70 Aligned_cols=340 Identities=13% Similarity=-0.029 Sum_probs=212.3
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC------CCCh--hhHHHHHHH
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL------TPSL--VSYNSIVHG 170 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~------~p~~--~~~~~l~~~ 170 (499)
......|+++.+..+++.+.......+..........+...|++++|..++......-- .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777777764322212223333445556778999999999987754310 1111 122233345
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHhcCCCHHHHHHHHHHHHhCCC---CCc--hhhHHHHHHHH
Q 010853 171 LCKHGGCMRAYQLLEEGIQFGYLPSE----HTYKVLVEGLCGESDLEKARKVLQFMLSKKD---VDR--TRICNIYLRAL 241 (499)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~ 241 (499)
+...|++++|...+++....-...+. ...+.+...+...|+++.|...+++...... .+. ......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 56799999999999987663111111 2334556667789999999999988764211 111 22445566778
Q ss_pred hccCChHHHHHHHHHHHhc----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCCHHHHHHHHHH
Q 010853 242 CLIKNPTELLNVLVFMLQT----QCQ--P-DVITLNTVINGFCKMGRIEEALKVLNDMVAGK---FCAPDAVTFTTIIFG 311 (499)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~ 311 (499)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ........+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998776542 211 1 12334455666777899999999988775421 101123445556677
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCCchhhH-----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH---HhHHHHHHHH
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSPGIVTY-----NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGL 383 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~ 383 (499)
+...|++++|.+.+.+.............+ ...+..+...|+.+.|..++............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 888999999999887764321111111111 11223445678999999998776543211111 1134567788
Q ss_pred HhcCChhhHHHHHHHHhcC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 384 CESNQLDEAKRFWDDIVWP----SNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
...|++++|...++++... +... ...+...+..++...|+.++|.+.+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999887642 2222 22356667788899999999999999998754
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.6e-05 Score=69.24 Aligned_cols=411 Identities=9% Similarity=0.043 Sum_probs=223.3
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchh
Q 010853 48 LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 127 (499)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 127 (499)
+-|..+|+.|++-+..+ ..++++..++++.. ...-.+..|..-+....+.++++...++|.+....- .+..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~------~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlD 87 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN------VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLD 87 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc------cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHh
Confidence 55788888888877666 88888877666543 233455677777788888888888888888876543 3455
Q ss_pred hHHHHHHHHHh-cCChhh----HHHHHHH-HHhcCCCCCh-hhHHHHHHHH---------HccCChhHHHHHHHHHHhCC
Q 010853 128 ACGHMIDSLCR-SGRNHG----ASRVVYV-MRKRGLTPSL-VSYNSIVHGL---------CKHGGCMRAYQLLEEGIQFG 191 (499)
Q Consensus 128 ~~~~l~~~~~~-~~~~~~----A~~~~~~-~~~~g~~p~~-~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~ 191 (499)
.|...++--.+ .|+... ..+.|+. +.+.|..+-. ..|+..+..+ ..+.+.+...++|+++...-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 66655543222 233332 2233433 3334543322 2344444332 22334555666666665522
Q ss_pred CCCCcccHHHHHHH-------------HhcCCCHHHHHHHHHHHHh--CCCCCchhh---------------HHHHHHHH
Q 010853 192 YLPSEHTYKVLVEG-------------LCGESDLEKARKVLQFMLS--KKDVDRTRI---------------CNIYLRAL 241 (499)
Q Consensus 192 ~~~~~~~~~~l~~~-------------~~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~ 241 (499)
+.-=...|+-.... --+...+..|.++++++.. +|..-...+ |..+|.-=
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 11111222222110 0012234444455544431 122111111 11111110
Q ss_pred hccC------Ch--HHHHHHHHHHH-hcCCCCCHhhH-----HHHHHHHHhcCC-------HHHHHHHHHHHhhCCCCCC
Q 010853 242 CLIK------NP--TELLNVLVFML-QTQCQPDVITL-----NTVINGFCKMGR-------IEEALKVLNDMVAGKFCAP 300 (499)
Q Consensus 242 ~~~~------~~--~~a~~~~~~~~-~~~~~~~~~~~-----~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~ 300 (499)
-..+ .. ....-.+++.+ -.+..|+.... ...-+.+...|+ .+++..+++....... ..
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~-~~ 326 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL-KE 326 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH-HH
Confidence 0000 00 00111111111 11111111100 001112222332 3444444444433211 22
Q ss_pred CHHHHHHHHHHHH---ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-CHHhH
Q 010853 301 DAVTFTTIIFGLL---NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA-DSTTY 376 (499)
Q Consensus 301 ~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 376 (499)
+..+|..+...-- .-+..+.....+.+........|+. +|...|+...+..-++.|..+|.+..+.+..+ +..++
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa 405 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHH
Confidence 3333333322111 1113455566666655555556654 67788888888889999999999999987766 67778
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHH
Q 010853 377 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI--VCYNVVIDGAC 454 (499)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 454 (499)
++++..|| .++.+-|.++|+.=.+.- ..++.--...+..+...++-..+..+|++....++.|+. ..|..++.-=.
T Consensus 406 ~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 406 AALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred HHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 88887665 578899999998765432 223334467888888999999999999999988666554 68999999889
Q ss_pred hcCChHHHHHHHHHHHH
Q 010853 455 KLSMKREAYQILREMRK 471 (499)
Q Consensus 455 ~~g~~~~a~~~~~~m~~ 471 (499)
.-|+...+.++-+++..
T Consensus 484 ~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRRFT 500 (656)
T ss_pred hcccHHHHHHHHHHHHH
Confidence 99999999999888754
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-07 Score=82.67 Aligned_cols=224 Identities=15% Similarity=0.087 Sum_probs=130.4
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 010853 206 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 285 (499)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 285 (499)
+.+.|++.+|.-.|+..++ ..+.....|..+.......++-..|+..+++.++..+. +....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVk-qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVK-QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHh-hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 4567777777777777764 35556667777777777777777777777777776543 666666777777777777777
Q ss_pred HHHHHHHhhCCCCCCCHHHHHH-------HHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 010853 286 LKVLNDMVAGKFCAPDAVTFTT-------IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 358 (499)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 358 (499)
++.|+....... |-...-.. .-..+..........++|-++....+..+|+.....|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p--~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKP--KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCc--cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 777777654321 10000000 001111222233344445554445554445555555555566666677777
Q ss_pred HHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010853 359 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
+.|+..+... +-|..+||.|...++...+.++|..-|+++++..+.. +.+...|.-.|...|.+++|.+.|-..+
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 7776666643 3455566666666666666667777666665432221 1233345556666666666666665544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.6e-05 Score=71.09 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=97.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
...|.+++|..+|++-.+. ..|=..|-..|.+.+|.++.+. . +--.-..||..-..-+-..++
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~-------~-DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAET-------K-DRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhh-------c-cceehhhhHHHHHHHHHhhcc
Confidence 6778888888888887763 2333445557888888764321 1 222234566666777777788
Q ss_pred HhHHHHHHHhccCCC----------C---------CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 010853 107 VNEVFRIAEDMPQGK----------S---------VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 167 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~----------~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 167 (499)
.+.|++.|++..... + ..|...|.--...+-..|+.+.|+.+|...++ |-++
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 888888877643211 0 01122222222223344555555555554432 3455
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 168 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
++..+-+|+.++|-++-++- -|......+.+.|-..|++.+|..+|.+..
T Consensus 945 VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 56666667777776665442 255566677888888888888888887654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-05 Score=65.92 Aligned_cols=195 Identities=11% Similarity=0.079 Sum_probs=118.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 203 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
+..+...|+...|+.....+++ -.+-+...+..-..+|...|++..|+.-++...+.... ++.++--+-..+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llE-i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLE-IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHh-cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhH
Confidence 4445566777777777777763 23444556666677777777777777666665544332 444555566666777777
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHH-------------HHHHHccCCHHHHHHHHHHHhccCCCCC--chhhHHHHHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTI-------------IFGLLNVGRIQEALNLLYQVMPQRGYSP--GIVTYNAVLRG 347 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~ 347 (499)
+.++...++..+. .||...+-.. +......+++.++++..+..|+...-.+ ....+..+-.+
T Consensus 240 ~~sL~~iRECLKl---dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 240 ENSLKEIRECLKL---DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHHHHcc---CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 7777777776654 3443222111 1223445666677776666664432111 11223344445
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
+...+++.+|++...+..... +.|..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 556677888888887777653 3447777777777777778888888887776543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-05 Score=66.01 Aligned_cols=318 Identities=13% Similarity=0.085 Sum_probs=204.7
Q ss_pred CHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh-HHHHH
Q 010853 90 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS-YNSIV 168 (499)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~-~~~l~ 168 (499)
+..-..-+...+...|++..|+.-|....+.++ .+-.++-.-...|...|+...|+.=|....+. +||-.. -..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 344455566666677777777777766665443 12222223344566666666666666666665 555322 22233
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChH
Q 010853 169 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 248 (499)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (499)
..+.++|.++.|..-|+..+++. |+..+ ...++.+.--.++-. .....+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchh
Confidence 45556677777776666666543 32211 111221111111111 1223345566789999
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010853 249 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 328 (499)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 328 (499)
.|+.....+++..+ .|...+..-..+|...|++..|+.=++...+.. ..+..++-.+-..+...|+.+.++..+.+.
T Consensus 173 ~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 173 NAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred hHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999988764 478888888999999999999998888777654 456666777778888899999999888886
Q ss_pred hccCCCCCchhhH----HHH---------HHHHHhcCCHHHHHHHHHHHhhCCCCcCH---HhHHHHHHHHHhcCChhhH
Q 010853 329 MPQRGYSPGIVTY----NAV---------LRGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEA 392 (499)
Q Consensus 329 ~~~~~~~~~~~~~----~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a 392 (499)
++ +.||.... -.+ +......++|.++.+-.+...+....... ..+..+-.++...+++.+|
T Consensus 250 LK---ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 250 LK---LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred Hc---cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 64 35654321 111 12234567788888888877776432122 3445566777888999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 393 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
++...++....+. |..++.--..+|.-...++.|+.-|+...+.+
T Consensus 327 iqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 327 IQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 9999998754322 47778888888988889999999998887754
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-05 Score=75.01 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=88.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 203 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
+.+....++|.+|+.+++.+... ...+..|..+..-|+..|+++.|.++|.+. ..++..|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 33444445555555555554322 222334444555555555555555555321 1234445555555555
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 362 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 362 (499)
+.|.++-++.... ......|.+-..-+-+.|++.+|.++|-.. -.|+ ..|..|-+.|..+..+++..
T Consensus 808 ~da~kla~e~~~~---e~t~~~yiakaedldehgkf~eaeqlyiti-----~~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP---EATISLYIAKAEDLDEHGKFAEAEQLYITI-----GEPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHhcCc---hhHHHHHHHhHHhHHhhcchhhhhheeEEc-----cCch-----HHHHHHHhhCcchHHHHHHH
Confidence 5555554444321 223334444444444555555555544221 0222 23344555555555555444
Q ss_pred HHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010853 363 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 431 (499)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 431 (499)
+-... .-..|...+..-+-..|++..|+..|-+.. -|.+-++.|-..+-+++|.++-
T Consensus 875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 33221 112233444445555566666655554432 1444455555555555555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.6e-06 Score=83.61 Aligned_cols=238 Identities=9% Similarity=0.029 Sum_probs=165.7
Q ss_pred CCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC
Q 010853 226 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT-QCQP---DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 301 (499)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 301 (499)
+.+.+...|-.+|......++.++|.++.++.+.. +++- -...|.++++.-..-|.-+...++|+++.+-. ..
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DA 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---ch
Confidence 34444556666666777777777777777666543 1111 23356667776667777788888888888632 23
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cCHHhHHHHH
Q 010853 302 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV-ADSTTYAIVI 380 (499)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 380 (499)
-..|..|...|.+.+.+++|.++++.|++..+ -....|...+..+.+.++-+.|..++.+..+.-.+ -......-.+
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 45577888888888888888888888777665 45567888888888888888888888888765211 1233445556
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCC
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI--VCYNVVIDGACKLSM 458 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 458 (499)
..-.+.|+.++++.+|+......++ -...|+.+|+.-.++|+.+.+..+|++.+..++.|-. ..|...+..=-..|+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 6667889999999999888765544 4557999999999999999999999999988877654 356666655555677
Q ss_pred hHHHHHHHHHH
Q 010853 459 KREAYQILREM 469 (499)
Q Consensus 459 ~~~a~~~~~~m 469 (499)
-+.+..+=.++
T Consensus 1687 e~~vE~VKarA 1697 (1710)
T KOG1070|consen 1687 EKNVEYVKARA 1697 (1710)
T ss_pred hhhHHHHHHHH
Confidence 65555444444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.2e-06 Score=82.54 Aligned_cols=242 Identities=13% Similarity=0.065 Sum_probs=185.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC----chhhHHHHHHHHhccCChHHHHHHH
Q 010853 179 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD----RTRICNIYLRALCLIKNPTELLNVL 254 (499)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 254 (499)
.|..+-+..+. -+-+...|...|......++++.|.++.++.+..-... ...+|.++++.-...|.-+...++|
T Consensus 1443 saeDferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 44444443333 23345678889999999999999999999988542111 1347888888888888889999999
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCC
Q 010853 255 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 334 (499)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 334 (499)
++..+..- ....|..|...|.+.+..++|.++++.|.+.- .-....|...+..+.+.++-+.|..++.+++....-
T Consensus 1521 eRAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1521 ERACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF--GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 99887632 34578899999999999999999999999875 357788999999999999999999999998866533
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH--HHH
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY--VYA 412 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~ 412 (499)
.-........+..-.+.|+.+++..+|+...... +-....|+..++.-.+.|+.+.++.+|+++...++.|-.. .|.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 2234445555666678999999999999998764 4567789999999999999999999999999887765332 455
Q ss_pred HHHHHHHhcCCHHHH
Q 010853 413 AMIKGLCRSGKIHEA 427 (499)
Q Consensus 413 ~li~~~~~~g~~~~a 427 (499)
-.+..--..|+-..+
T Consensus 1676 kwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHHHHHHhcCchhhH
Confidence 555555555654433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-06 Score=80.04 Aligned_cols=214 Identities=12% Similarity=0.094 Sum_probs=167.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 010853 200 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 279 (499)
Q Consensus 200 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (499)
..+...+.+.|-...|..+++++. .|..++.+|+..|+..+|..+..+..++ +|+...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 345667788888888988888775 5778889999999999999988888773 67888888888887777
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 010853 280 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 359 (499)
Q Consensus 280 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 359 (499)
.-+++|.++.+....+ +-..+.....+.++++++.+.++..++.+.. ...+|-....+..+.++++.|.+
T Consensus 471 s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHH
Confidence 7788888888865432 1222222334478899999999887766644 34567777777788899999999
Q ss_pred HHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 360 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
.|..-.... +-+...||.+-.+|.+.++..+|...+.+..+.+. -+..+|...+....+.|.+++|++.+.++.+
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 998887753 44567899999999999999999999999987773 3556788888888899999999999888875
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-06 Score=78.89 Aligned_cols=220 Identities=11% Similarity=0.045 Sum_probs=179.2
Q ss_pred CchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHH
Q 010853 229 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 308 (499)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 308 (499)
|-...-..+...+...|-...|..+++.+ ..|..++.+|...|+..+|..+..+-.+. +||+..|..+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~L 463 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLL 463 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHh
Confidence 33345556777888889999999998754 46778899999999999999999888773 7999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (499)
.+......-+++|.++.+..+.. .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 99988888899999988775432 11122222345789999999999887765 5567788888888899999
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 468 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (499)
+..|.+.|.......+. +...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999998755433 56689999999999999999999999999988 44777888888889999999999999998
Q ss_pred HHH
Q 010853 469 MRK 471 (499)
Q Consensus 469 m~~ 471 (499)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 864
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.7e-06 Score=77.91 Aligned_cols=229 Identities=12% Similarity=0.053 Sum_probs=128.0
Q ss_pred HHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc-C--------CCCChhhHHHHHHHH
Q 010853 101 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-G--------LTPSLVSYNSIVHGL 171 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-g--------~~p~~~~~~~l~~~~ 171 (499)
|...|+.|.|.+-++-++. ..+|..+.++|.+..+.+-|.-.+..|... | -.|+ .+=.-..-..
T Consensus 738 yvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 4556777777666666543 246667777777777766666555555321 0 0111 1111122223
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHH
Q 010853 172 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 251 (499)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 251 (499)
...|..++|+.+|.+-+. |..|=..|-..|.|++|.++-+.- +..--..+|.....-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~---DRiHLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETK---DRIHLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhc---cceehhhhHHHHHHHHHhhccHHHHH
Confidence 356667777777766554 233344455666777666665432 11112234555555555556666665
Q ss_pred HHHHHH----------HhcC---------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 010853 252 NVLVFM----------LQTQ---------CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 252 ~~~~~~----------~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (499)
+.|++. +... -..|...|......+-..|+.+.|+.++...++ |-+++...
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~ 948 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIK 948 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeE
Confidence 555422 1111 012445555566666667888888887776553 44566666
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 365 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 365 (499)
+-.|+.++|-++-++ .-|......+.+.|-..|++.+|..+|.+.+
T Consensus 949 C~qGk~~kAa~iA~e-------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEE-------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeccCchHHHHHHHh-------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 677777777776544 1244445566777777777777777777654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-05 Score=70.76 Aligned_cols=218 Identities=11% Similarity=0.083 Sum_probs=109.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCH--HHH
Q 010853 245 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI--QEA 321 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 321 (499)
+..++|+.+..++++..+. +..+|+.--.++...| ++++++..++++.+.. +.+..+|+.....+.+.++. +++
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhhHHH
Confidence 4445555555555544322 3334444434444444 3566666666655543 33444444443334444432 445
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc---CCh----hhHHH
Q 010853 322 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES---NQL----DEAKR 394 (499)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~a~~ 394 (499)
+..+.+++... +-+..+|+...-++...|+++++++.++++++.+ +-|...|+....++.+. |.. ++...
T Consensus 128 l~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 128 LEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 55555544333 3344555555555555666666666666666654 33444554444443332 212 34455
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-------------
Q 010853 395 FWDDIVWPSNIHDNYVYAAMIKGLCRS----GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS------------- 457 (499)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------- 457 (499)
+..+++...+. |...|+.+...+... ++..+|.+.+.+..+.++. +......|+..|+...
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 55555544433 455566555555552 3334566666665554322 4556666666665421
Q ss_pred -----ChHHHHHHHHHHH
Q 010853 458 -----MKREAYQILREMR 470 (499)
Q Consensus 458 -----~~~~a~~~~~~m~ 470 (499)
..++|.++++.+.
T Consensus 283 ~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 283 AEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 2366777777773
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-05 Score=74.71 Aligned_cols=433 Identities=10% Similarity=-0.005 Sum_probs=208.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHH
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 102 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (499)
...|....+..+|.+.|+...+.+ ..+..........|+...+++.|..+....-+.-+ ...-...|..+.-.+.
T Consensus 499 G~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~----a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 499 GQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP----AFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch----HHHHHhhhhhcccccc
Confidence 333344446666666666666543 23445555666666666666666554222111111 1111112222444455
Q ss_pred cCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH--HHHHHccCChhHH
Q 010853 103 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI--VHGLCKHGGCMRA 180 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l--~~~~~~~~~~~~a 180 (499)
+.++...|+.-|+...+..+ .|...|..+..+|.+.|++..|.++|.+.... .|+. +|... .-.-+..|.+.++
T Consensus 574 ea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred CccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 66666666666666666554 55667777777777777777777777766654 2221 22211 1223346666666
Q ss_pred HHHHHHHHhC------CCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHH-------hCCCCCchhhHHHHHHHHh---cc
Q 010853 181 YQLLEEGIQF------GYLPSEHTYKVLVEGLCGESDLEKARKVLQFML-------SKKDVDRTRICNIYLRALC---LI 244 (499)
Q Consensus 181 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~---~~ 244 (499)
+..+...... +..--..++..+...+...|-..++..+++.-. ......+...|-.+-.++. ..
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~ 729 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQE 729 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHh
Confidence 6666655432 111112233333333333333333333333221 1111111112221111111 10
Q ss_pred C-C-h-HHHHHHHH-HHHhcCCCC--------------------CHhhHHHHHHHHHh----c----CCHHHHHHHHHHH
Q 010853 245 K-N-P-TELLNVLV-FMLQTQCQP--------------------DVITLNTVINGFCK----M----GRIEEALKVLNDM 292 (499)
Q Consensus 245 ~-~-~-~~a~~~~~-~~~~~~~~~--------------------~~~~~~~l~~~~~~----~----~~~~~a~~~~~~~ 292 (499)
. + + .....++. +....+.-+ +..+|..+...|.+ . .+...|...+...
T Consensus 730 e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kka 809 (1238)
T KOG1127|consen 730 EPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKA 809 (1238)
T ss_pred cccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 0 0 0 00000110 011111111 12223233222222 1 1223455555555
Q ss_pred hhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC
Q 010853 293 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 372 (499)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 372 (499)
.+.. ..+..+|+.|.-. ...|.+.-+.-.|-+... ..+....+|..+.-.+....+++.|...|...+... +.+
T Consensus 810 V~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~n 883 (1238)
T KOG1127|consen 810 VSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLN 883 (1238)
T ss_pred HHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhcC-chh
Confidence 5433 4456666665444 444555555544433221 123345566666666777888999999998888764 445
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHH----hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------cCC
Q 010853 373 STTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD---------SGV 439 (499)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~ 439 (499)
...|-.........|+.-+...+|..- ...|-.++..-|-........+|+.++-+...+++.. .+.
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~ 963 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGH 963 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 555555554455567766666666552 1233344544455555555666766655444333321 122
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 440 TPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+-+...|.+.....-+.+.++.|.+...+..
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777777766653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00024 Score=69.01 Aligned_cols=395 Identities=11% Similarity=0.064 Sum_probs=190.8
Q ss_pred CChhhHHHHHHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhH
Q 010853 17 PPVASLTSALAITGEMDVAYKVFDEMRHCGVL--PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 94 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 94 (499)
.+...|..++...+-+. +++.++..+.+++ .|+..-+..+.++-..+-..+-+++++++.-. .+.++-+...-
T Consensus 950 ~D~~LW~~VL~e~n~~r--RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEENPYR--RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQ 1024 (1666)
T ss_pred cChHHHHHHHhccChHH--HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---Ccccccchhhh
Confidence 34444555553333222 3455555554432 25556666777777777777777766665432 11222222222
Q ss_pred HHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-----------------
Q 010853 95 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL----------------- 157 (499)
Q Consensus 95 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~----------------- 157 (499)
+.|+-...+ -+..+..+..+++-..+. |+ +...+...+-+++|..+|++....+-
T Consensus 1025 nLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1025 NLLILTAIK-ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYE 1096 (1666)
T ss_pred hhHHHHHhh-cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHH
Confidence 223322222 233344444444443332 22 22334444555555555554321100
Q ss_pred ----CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhh
Q 010853 158 ----TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 233 (499)
Q Consensus 158 ----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (499)
--.+..|..+..+-...|...+|.+-|-+. -|+..|..+++...+.|.+++..+++....++...|. +
T Consensus 1097 fAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--i 1168 (1666)
T KOG0985|consen 1097 FAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--I 1168 (1666)
T ss_pred HHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--c
Confidence 002334455555555555555544444221 2344455555555555555555555554443333332 2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
=..++-+|++.++..+.++++. -|+......+.+-|...|.++.|.-++.. ..-|..+...+.
T Consensus 1169 d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1169 DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN----------VSNFAKLASTLV 1231 (1666)
T ss_pred hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH----------hhhHHHHHHHHH
Confidence 2344445555555444444331 23444444455555555555555444432 223555555566
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHH
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 393 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 393 (499)
..|++..|.+.-++ ..+..||..+-.+|...+.+..| +|...++.....-..-++..|...|-+++..
T Consensus 1232 ~LgeyQ~AVD~aRK-------Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARK-------ANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred HHHHHHHHHHHhhh-------ccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHH
Confidence 66666666554433 12445666666666555444332 2333444445556677788888888888888
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC------CChhhHHHHHHHHHhcCChHHHH
Q 010853 394 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVT------PNIVCYNVVIDGACKLSMKREAY 463 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a~ 463 (499)
.+++...... ......|+.|.-.|.+- ++++..+.++-.-.+ +++ -....|+-++-.|.+-..++.|.
T Consensus 1300 sl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1300 SLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 8877663221 11333566666666654 345555444433321 110 02245666666666666665543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-08 Score=55.91 Aligned_cols=32 Identities=44% Similarity=0.877 Sum_probs=18.8
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 438 GVTPNIVCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
|+.||..||+.||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555666665555566665565555555
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-06 Score=76.64 Aligned_cols=254 Identities=14% Similarity=0.084 Sum_probs=182.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHHhcCCC
Q 010853 133 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP-SEHTYKVLVEGLCGESD 211 (499)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 211 (499)
..-+.+.|++.+|.-.|+...+..+. +...|..|.......++-..|+..+.+..+. .| +......|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhh
Confidence 34467889999999999998888544 6788999999988999888999999888774 44 45667777788888888
Q ss_pred HHHHHHHHHHHHhCCCCC--------chhhHHHHHHHHhccCChHHHHHHHHHHH-hcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 212 LEKARKVLQFMLSKKDVD--------RTRICNIYLRALCLIKNPTELLNVLVFML-QTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
-..|...++..+....+- +...-.. ..+..........++|-++. +.+..+|..+...|.-.|--.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 888888887765322100 0000000 12222333444455554444 445456788888888889999999
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVF 361 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 361 (499)
++|.+.|+...... +-|...||.|...++...+..+|+..|.++++- .|. +.....|.-+|...|.+++|...|
T Consensus 447 draiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQL---QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc---CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999998875 678899999999999999999999999997643 555 334445566789999999999888
Q ss_pred HHHhh---C------CCCcCHHhHHHHHHHHHhcCChhhHHHHH
Q 010853 362 NCMLG---I------GVVADSTTYAIVIDGLCESNQLDEAKRFW 396 (499)
Q Consensus 362 ~~~~~---~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (499)
-..+. . +..++..+|..|=.++...++.+.+.+..
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 76542 1 12234567777777777788877665554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-08 Score=55.40 Aligned_cols=32 Identities=38% Similarity=0.840 Sum_probs=20.5
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 010853 156 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 187 (499)
Q Consensus 156 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 187 (499)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.7e-05 Score=72.56 Aligned_cols=411 Identities=10% Similarity=0.022 Sum_probs=225.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
.-..+...|+..|-+..+.++. =...|..|...|...-+..+|...|++.++--+ -+........+.|++..+
T Consensus 469 ~~rK~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa------tdaeaaaa~adtyae~~~ 541 (1238)
T KOG1127|consen 469 CMRKNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA------TDAEAAAASADTYAEEST 541 (1238)
T ss_pred HhhhhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhcccc
Confidence 4455577888888887776532 245788999999888899999998888875322 145566778899999999
Q ss_pred HhHHHHHHHhccCCCCC-CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010853 107 VNEVFRIAEDMPQGKSV-NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 185 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 185 (499)
++.|..+.-...+..+. .-...|....-.|...++...|..-|+...+..++ |...|..+..+|.++|++..|.++|.
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhh
Confidence 99998884443332210 11122333444567788999999999998887655 77889999999999999999999998
Q ss_pred HHHhCCCCCCcccHHHH--HHHHhcCCCHHHHHHHHHHHHhC------CCCCchhhHHHHHHHHhccCChHHHHHHHHHH
Q 010853 186 EGIQFGYLPSEHTYKVL--VEGLCGESDLEKARKVLQFMLSK------KDVDRTRICNIYLRALCLIKNPTELLNVLVFM 257 (499)
Q Consensus 186 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (499)
+... +.|+. +|... ...-+..|.+.++...+..+... +...-..++-.+...+...|-..++.++++.-
T Consensus 621 kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 621 KASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred hhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 8766 34543 23222 22346788999999888877532 11111223333333333333333333333322
Q ss_pred -------HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCH---H---HHHHH
Q 010853 258 -------LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI---Q---EALNL 324 (499)
Q Consensus 258 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~ 324 (499)
.......+...|..+-++ ..+|-.... . .|+......+..-.-..+.. + -+.+.
T Consensus 698 ie~f~~~l~h~~~~~~~~Wi~asda----------c~~f~q~e~-~--~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c 764 (1238)
T KOG1127|consen 698 IESFIVSLIHSLQSDRLQWIVASDA----------CYIFSQEEP-S--IVNMHYLIILSKQLEKTGALKKNDLLFLGYEC 764 (1238)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhHH----------HHHHHHhcc-c--chHHHHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 222212233333332222 222222220 0 22222222222211111111 1 11111
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHHh----c----CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHH
Q 010853 325 LYQVMPQRGYSPGIVTYNAVLRGLFR----L----RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 396 (499)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (499)
+-. ......+..+|..+...|.+ . .+...|...+....+.. .-+..+|+.|. .....|++.-+...|
T Consensus 765 ~~~---hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCf 839 (1238)
T KOG1127|consen 765 GIA---HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCF 839 (1238)
T ss_pred hhH---HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHH-Hhhccchhhhhhhhh
Confidence 111 11111123333333333322 1 12345666666665542 23444555444 335567777777666
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 010853 397 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 468 (499)
Q Consensus 397 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (499)
-......+. ...+|..+...+....+++.|...|.......+. |...|-.........|+.-+...+|..
T Consensus 840 Iks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 840 IKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 655544332 5556777777777777888887777777665322 444444433334445655555555554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.3e-06 Score=67.39 Aligned_cols=117 Identities=11% Similarity=0.130 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 010853 352 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL-CRSGK--IHEAV 428 (499)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~a~ 428 (499)
++.+++...++...+.. +.+...|..+...|...|+++.|...+++.....+. +...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34444444444444443 445555555555555555555555555555544332 444444444442 34444 35555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 429 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+++++..+.+.. +...+..+...+...|++++|+..|+++.+
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555432 444555555555555555555555555554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-05 Score=68.25 Aligned_cols=128 Identities=12% Similarity=0.065 Sum_probs=57.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHHhcCC-CHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 010853 164 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS-EHTYKVLVEGLCGES-DLEKARKVLQFMLSKKDVDRTRICNIYLRAL 241 (499)
Q Consensus 164 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (499)
+..+-..+...+..++|+.++.++++.. |+ ..+|+..-.++...| ++++++..++++.+. .+.+..+|+.....+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-npknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-NPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-CCcchHHhHHHHHHH
Confidence 3334444445556666666666665532 32 233333333344444 355566666555532 222333344333333
Q ss_pred hccCCh--HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010853 242 CLIKNP--TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 295 (499)
Q Consensus 242 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 295 (499)
.+.++. +++..+++.+.+...+ +..+|+...-++...|+++++++.++++.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333331 3344444444443322 4444444444444444444444444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.1e-05 Score=62.06 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=38.6
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 423 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (499)
+.+..+++.|...++.|.+. .+..|.+.|..++.+ .+.+..|.-+|+++.++ ..|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 33444445555555555442 133444444444332 22344445555554321 23344444444445555555
Q ss_pred HHHHHHHHHHHHHc
Q 010853 424 IHEAVHFLYELVDS 437 (499)
Q Consensus 424 ~~~a~~~~~~~~~~ 437 (499)
+++|..+++...+.
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555555444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.4e-06 Score=71.37 Aligned_cols=190 Identities=13% Similarity=0.060 Sum_probs=123.7
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch-hhH
Q 010853 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD-AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI-VTY 341 (499)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 341 (499)
.....+..+...+...|+++.|...|+++.......|. ...+..+..++...|++++|...+.+..+...-.|.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35566777778888899999999999988775411111 2456777888888999999999998876554322221 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHH
Q 010853 342 NAVLRGLFRL--------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 413 (499)
Q Consensus 342 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 413 (499)
..+..++... |+++.|.+.++.+.+.. +-+...+..+..... ... .. ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 3444444443 66778888888887653 222222222211110 000 00 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVDSGVT-P-NIVCYNVVIDGACKLSMKREAYQILREMRKN 472 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 472 (499)
+...|.+.|++++|...+++..+.... | ....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567788999999999999999876321 2 3467889999999999999999999888653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.4e-06 Score=66.49 Aligned_cols=159 Identities=15% Similarity=0.068 Sum_probs=105.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh
Q 010853 306 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 385 (499)
Q Consensus 306 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (499)
..+-..+...|+-+....+..+..... +.|.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 455556666666666666655533222 3344444556667777777777777777777664 6677777777777777
Q ss_pred cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 010853 386 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 465 (499)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 465 (499)
.|+++.|..-|.+..+.... +...++.+...+.-.|+.+.|..++......+.. |...-..+.......|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 77777777777777655433 4445667777777777777777777777665432 555666666677777777777776
Q ss_pred HHHH
Q 010853 466 LREM 469 (499)
Q Consensus 466 ~~~m 469 (499)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 5543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-05 Score=79.41 Aligned_cols=151 Identities=10% Similarity=0.068 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 010853 127 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 206 (499)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 206 (499)
.++..+..+|-+.|+.++|..+++++.+..+. |+.+.|.+...|... ++++|.+++.+.+.. +
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 45555666677777777777777777766533 566667777777666 777777766665442 4
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc-CCCCCHhhHHHHHHHHHhcCCHHHH
Q 010853 207 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKMGRIEEA 285 (499)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 285 (499)
...+++..+.+++.++... .+. +.+.-.++.+.+... +..--..++-.+-..|-..++++++
T Consensus 180 i~~kq~~~~~e~W~k~~~~-~~~----------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHY-NSD----------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HhhhcchHHHHHHHHHHhc-Ccc----------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 4455666666666665532 111 222222233333322 2222344455556667777778888
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 286 LKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
..+|+.+.+.. +.|.....-++.+|.
T Consensus 243 i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 88888887765 456666666666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.4e-06 Score=72.08 Aligned_cols=187 Identities=9% Similarity=-0.064 Sum_probs=94.3
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCch--hh
Q 010853 51 SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE--FA 128 (499)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 128 (499)
+..+..++..+...|++++|...+.+++...+.. .....++..+..++.+.|++++|...++.+.+..+.... .+
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFS---PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4445555566666666666666555554433211 111234455556666666666666666666544331111 12
Q ss_pred HHHHHHHHHhc--------CChhhHHHHHHHHHhcCCCCChh-hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccH
Q 010853 129 CGHMIDSLCRS--------GRNHGASRVVYVMRKRGLTPSLV-SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 199 (499)
Q Consensus 129 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 199 (499)
+..+..++... |++++|.+.|+.+.+. .|+.. .+..+..... . ..... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH--------HHH
Confidence 33333333332 5566677777776665 23321 2211111100 0 00000 001
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCC--CCchhhHHHHHHHHhccCChHHHHHHHHHHHhc
Q 010853 200 KVLVEGLCGESDLEKARKVLQFMLSKKD--VDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 260 (499)
Q Consensus 200 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (499)
..+...+.+.|+++.|...++....... +.....+..+..++...|++++|...++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1344556677777777777777664321 223456667777777777777777777666554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-05 Score=65.43 Aligned_cols=159 Identities=15% Similarity=0.142 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 349 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 349 (499)
..+-..+...|+-+....+........ +.|.......+....+.|++..|...+.+.... -++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHH
Confidence 445555666677666666666654432 345555556777777788888888877775433 3677777887777788
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 429 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 429 (499)
+.|+++.|..-|.+..+.- +-+...++.+.-.+.-.|+.+.|..++......+.. |..+-..+..+....|++++|..
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHh
Confidence 8888888888887777753 335566677777777778888888888777654433 56666777777777888888777
Q ss_pred HHHHH
Q 010853 430 FLYEL 434 (499)
Q Consensus 430 ~~~~~ 434 (499)
+..+-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 65543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-05 Score=65.26 Aligned_cols=149 Identities=8% Similarity=0.081 Sum_probs=103.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcC
Q 010853 273 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 352 (499)
Q Consensus 273 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 352 (499)
+..|...|+++.+....+.+.. |. ..+...++.+++...+.+.+... +.+...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCC
Confidence 3456777777766544433221 11 01122455666766676666554 556777888888888888
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHH-HhcCC--hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGL-CESNQ--LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 429 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 429 (499)
+++.|...|+...+.. +.+...+..+..++ ...|+ .++|.+++++..+.++. +..++..+...+...|++++|+.
T Consensus 88 ~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 88 DYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888765 45677777777764 56666 48888888888877655 66778888888888888888888
Q ss_pred HHHHHHHcC
Q 010853 430 FLYELVDSG 438 (499)
Q Consensus 430 ~~~~~~~~~ 438 (499)
.|+++.+..
T Consensus 166 ~~~~aL~l~ 174 (198)
T PRK10370 166 LWQKVLDLN 174 (198)
T ss_pred HHHHHHhhC
Confidence 888888764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-05 Score=78.24 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=58.7
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHH
Q 010853 51 SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 130 (499)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (499)
+..+..|..+..+.|.+++|..++..+++.-|. +......++..+.+.+++++|+..+++.....+ .+.....
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~ 158 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREIL 158 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHH
Confidence 444444444444555555554444444432221 222333344444455555555555555444443 2333344
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 189 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 189 (499)
.+..++.+.|++++|..+|+++...+. -+..++..+..++.+.|+.++|...|+...+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444445555555555555444211 1234444444444445555555555544443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-05 Score=63.19 Aligned_cols=237 Identities=15% Similarity=0.123 Sum_probs=146.2
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHH
Q 010853 240 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 319 (499)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (499)
-+.-.|++..++..-....... .+...-.-+-++|...|++.... .++.... .|.......+......-++.+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~~~--~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKEGK--ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---ccccccc--CChHHHHHHHHHHhhCcchhH
Confidence 3344455555554443333221 12222233445555555543322 2333222 344444444444444444444
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 010853 320 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 399 (499)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 399 (499)
+-+.-+.+.+.......+......-...|++.+++++|++..+... +......=+..+.+..+++-|++.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443343434333333333333334456889999999999887621 3333444455677888999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 010853 400 VWPSNIHDNYVYAAMIKGLCRS----GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 475 (499)
Q Consensus 400 ~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 475 (499)
.+.. +..+.+.|..+|.+. +.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++..... .
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~ 238 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-A 238 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 7532 556777777777653 5788999999999875 47889999999999999999999999999998754 3
Q ss_pred CCHhHHHHHHHHhcccCCC
Q 010853 476 PDAVTWRILDKLHGNRGND 494 (499)
Q Consensus 476 p~~~~~~~l~~~~~~~g~~ 494 (499)
-++.+..-++.+--..|++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKD 257 (299)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 3567777676666666654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.2e-05 Score=74.55 Aligned_cols=199 Identities=15% Similarity=0.121 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 010853 281 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 360 (499)
Q Consensus 281 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 360 (499)
...+++.-+....... +.+...+..|.....+.|.+++|..++....+.. +.+......+...+.+.+++++|...
T Consensus 67 ~~~~~~~~~~~~~~~~--~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 67 KPAAALPELLDYVRRY--PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred chHhhHHHHHHHHHhc--cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHH
Confidence 3334443333333333 4568888888888889999999999888866443 33455666777888889999999999
Q ss_pred HHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010853 361 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 440 (499)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 440 (499)
++...... +-+......+..++...|++++|..+|+++...++ -+..++..+..++...|+.++|...|++..+.. .
T Consensus 143 ~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~ 219 (694)
T PRK15179 143 IELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-G 219 (694)
T ss_pred HHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-C
Confidence 99988875 55667777888888899999999999999887433 256788888888899999999999999888753 3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHhHHHHHHHHhcccC
Q 010853 441 PNIVCYNVVIDGACKLSMKREAYQILREMRK----NGLNPDAVTWRILDKLHGNRG 492 (499)
Q Consensus 441 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~l~~~~~~~g 492 (499)
|....|+.++ ++...-..+++++.- .|...........+.-+++..
T Consensus 220 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 220 DGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred cchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 3445555443 233334555555532 233333445555555555543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00018 Score=64.89 Aligned_cols=56 Identities=18% Similarity=0.107 Sum_probs=48.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 415 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 415 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
...+.+.|++..|+..+.+++... +-|...|....-+|.+.|.+..|++=.+...+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 456778899999999999999987 33788999999999999999999988777766
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=8e-05 Score=73.50 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=30.5
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHH
Q 010853 198 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 257 (499)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (499)
.+..+..+|-+.|+.+++..+++++++.. +.++.+.+.+...|+.. +.++|.+++.+.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 44555555555555555555555555433 44444555555555555 555555554433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.5e-06 Score=64.48 Aligned_cols=94 Identities=7% Similarity=-0.154 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (499)
+..+..++...|++++|...|+.+....+. +...|..+..++...|++++|...|++....+. .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 334455556666666666666666554433 555666666666666666666666666666542 255566666666666
Q ss_pred cCChHHHHHHHHHHHH
Q 010853 456 LSMKREAYQILREMRK 471 (499)
Q Consensus 456 ~g~~~~a~~~~~~m~~ 471 (499)
.|++++|...|+...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.51 E-value=7e-06 Score=63.12 Aligned_cols=106 Identities=9% Similarity=0.018 Sum_probs=63.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 010853 373 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 452 (499)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (499)
......+...+...|++++|.+.++.+...++. +...|..+..++...|++++|...+++..+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 344445555666666666666666666554332 55566666666666667777776666666554 2245555556666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHH
Q 010853 453 ACKLSMKREAYQILREMRKNGLNPDAVTWR 482 (499)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 482 (499)
+...|++++|...|++..+ +.|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence 6667777777777766665 345544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-05 Score=61.31 Aligned_cols=106 Identities=8% Similarity=-0.100 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
+......+...|++++|...|+...... +.+...+..+..++...|++++|...|+.+...++. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 4456677888999999999999998875 567888889999999999999999999999876543 77788889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010853 421 SGKIHEAVHFLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 449 (499)
.|++++|+..|++..+.... +...+...
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~-~~~~~~~~ 132 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYA-DASWSEIR 132 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 99999999999999886422 33444333
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00054 Score=61.36 Aligned_cols=138 Identities=20% Similarity=0.256 Sum_probs=83.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-hhhHHHHHHHHHhcCCH
Q 010853 276 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRV 354 (499)
Q Consensus 276 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~ 354 (499)
+...|+++.|+..++.+.... +-|...+......+.+.++..+|.+.+++++... |+ ....-.+..++.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALD---PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCccHHHHHHHHHHHhcCCh
Confidence 345566777777777666543 4455555566666667777777777666655332 33 33444455666666777
Q ss_pred HHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 355 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 434 (499)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 434 (499)
.+|+.+++...... +.|+..|..|.++|...|+..++..-.. ..|...|+++.|+..+...
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHH
Confidence 77777766666553 5566667777777776666555543332 2344556666666666666
Q ss_pred HHc
Q 010853 435 VDS 437 (499)
Q Consensus 435 ~~~ 437 (499)
.+.
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00045 Score=56.30 Aligned_cols=189 Identities=13% Similarity=0.117 Sum_probs=112.6
Q ss_pred CChHHHHHHHHHHHhc---C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHH
Q 010853 245 KNPTELLNVLVFMLQT---Q-CQPDVI-TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 319 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (499)
.++++..+++.++... | ..++.. .|..++-+....|+.+.|...++.+..+- +.+...-..-...+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 3445555555554431 2 333333 23445555566777777777777776653 222222222222344567777
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 010853 320 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 399 (499)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 399 (499)
+|+++++..+... +.|..++-.=+...-..|..-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888887766554 445555655555555566666777666666654 3567778888888888888888888888887
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q 010853 400 VWPSNIHDNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSGV 439 (499)
Q Consensus 400 ~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~ 439 (499)
.-..+. +...+..+...+.-.| +.+-+.++|.+.++...
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 654332 4444555655554444 45567777777776543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0028 Score=61.23 Aligned_cols=224 Identities=15% Similarity=0.131 Sum_probs=145.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH--HHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR--GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 104 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 104 (499)
...+++..|++....+.+.. ||. .|..++. .+.+.|+.++|..+++... .. ...|..|...+-..|...
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~----~~--~~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALY----GL--KGTDDLTLQFLQNVYRDL 90 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhc----cC--CCCchHHHHHHHHHHHHH
Confidence 56788999999999988863 554 3444444 4467899999986554332 11 122788899999999999
Q ss_pred CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccC-C------
Q 010853 105 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP-SLVSYNSIVHGLCKHG-G------ 176 (499)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~-~------ 176 (499)
++.++|..++++..... |+......+..+|.+.+.+.+-.+.--++-+. .| +...+=++++...... .
T Consensus 91 ~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred hhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCccccc
Confidence 99999999999998776 45667777888899988887655544444443 22 3444444444443311 1
Q ss_pred ---hhHHHHHHHHHHhCC-CCCCcccHHHHHHHHhcCCCHHHHHHHHHH-HHhCCCCCchhhHHHHHHHHhccCChHHHH
Q 010853 177 ---CMRAYQLLEEGIQFG-YLPSEHTYKVLVEGLCGESDLEKARKVLQF-MLSKKDVDRTRICNIYLRALCLIKNPTELL 251 (499)
Q Consensus 177 ---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 251 (499)
..-|....+.+.+.+ ..-+..-.......+...|++++|..++.. ..+.-...+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 122445555555543 111222222333445567889999999843 333334444455567778888889999999
Q ss_pred HHHHHHHhcCCC
Q 010853 252 NVLVFMLQTQCQ 263 (499)
Q Consensus 252 ~~~~~~~~~~~~ 263 (499)
++-.++...+..
T Consensus 247 ~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 247 ELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHhCCc
Confidence 999888888753
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00035 Score=56.90 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=114.2
Q ss_pred cCChhHHHHHHHHHHh---CC-CCCCcc-cHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChH
Q 010853 174 HGGCMRAYQLLEEGIQ---FG-YLPSEH-TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 248 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (499)
..+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|..+++++..+ .+.+..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 3456677777766653 23 344443 3556666777788888888888888743 3444444444444555567777
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010853 249 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 328 (499)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 328 (499)
+|+++++.+++.. +.|..++..-+...-..|+--+|++-+.+..+.- ..|...|..+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 7777777777665 3355556555555555666666666666666543 567777777777777777777777777776
Q ss_pred hccCCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHhhC
Q 010853 329 MPQRGYSPGIVTYNAVLRGLFRLR---RVEEAKEVFNCMLGI 367 (499)
Q Consensus 329 ~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 367 (499)
+-.. |.++..+..+...+...| +.+.+.+.|....+.
T Consensus 181 ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5433 223333333443333322 455566666666654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.2e-05 Score=59.45 Aligned_cols=105 Identities=15% Similarity=0.070 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
.....+...+...|++++|...++.+...+ +.+...+..+..++...|+++.|...++.....++. +...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 345556666777888888888888887765 456777777888888888888888888887765433 556677777788
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 010853 419 CRSGKIHEAVHFLYELVDSGVTPNIVCYN 447 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (499)
...|++++|...|++..+. .|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 8888888888888888775 34444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.4e-06 Score=48.56 Aligned_cols=33 Identities=42% Similarity=0.837 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 010853 445 CYNVVIDGACKLSMKREAYQILREMRKNGLNPD 477 (499)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 477 (499)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777766
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00056 Score=61.29 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=84.9
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC-HHhHHHHHHHHHhcCChh
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD-STTYAIVIDGLCESNQLD 390 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 390 (499)
+...|++++|+..+...+... +.|+.........+...++.++|.+.++.+... .|+ ....-.+..++.+.|++.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 345566677777776654332 334444445556666777777777777777665 333 444555666777777777
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+|..+++......+. |+..|..|.++|...|+..++..-.. ..+...|+++.|+..+....
T Consensus 392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHH
Confidence 777777766654433 66667777777777777666544332 23455677777777777665
Q ss_pred HC
Q 010853 471 KN 472 (499)
Q Consensus 471 ~~ 472 (499)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 53
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.9e-06 Score=47.63 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 444 VCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
.+|+.++.+|.+.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.4e-05 Score=67.62 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 421 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (499)
..++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+..+. +...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 344555555666777777777776653 33 3334566666666666777777666644332 555555566666777
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 422 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 422 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
++++.|+++.+++....+ -+..+|..|..+|...|+++.|+..++.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777766521 134577777777777777777776666553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.7e-06 Score=47.35 Aligned_cols=34 Identities=32% Similarity=0.954 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 443 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 443 (499)
+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888899889999999999888888888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0001 Score=57.23 Aligned_cols=126 Identities=14% Similarity=0.078 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC---HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCH--HHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD---STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN--YVYAAM 414 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l 414 (499)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3667777777777776653 222 122333446666777777777777777765433221 234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 415 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 415 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
...+...|++++|+..++..... ......+......|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66777777777777777654322 223345556666777777777777777653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.005 Score=56.08 Aligned_cols=432 Identities=9% Similarity=0.045 Sum_probs=241.8
Q ss_pred CCC-ChhhHHHHH--HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCH
Q 010853 15 PFP-PVASLTSAL--AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 91 (499)
Q Consensus 15 ~~~-~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (499)
.+| ++.+|..++ ..+...++++..++++... .+-.+..|..-+..-.+.++++..+.+|.+.+...- +.
T Consensus 15 ~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-------nl 86 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-------NL 86 (656)
T ss_pred cCCccHHHHHHHHHHHccCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-------hH
Confidence 344 678888888 6777999999999999885 344678899999999999999999988877765422 23
Q ss_pred HhHHHHHHHHHc-CCCHh----HHHHHHHhcc-CCCCC-CchhhHHHHHHH---------HHhcCChhhHHHHHHHHHhc
Q 010853 92 AAFANLVDSLCR-EGYVN----EVFRIAEDMP-QGKSV-NEEFACGHMIDS---------LCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 92 ~~~~~l~~~~~~-~~~~~----~a~~~~~~~~-~~~~~-~~~~~~~~l~~~---------~~~~~~~~~A~~~~~~~~~~ 155 (499)
..|..-+.--.+ .|+.. ...+.|+-.. +.|.. .+-..|+..+.. +..+.+++...++++++...
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 344433332221 22222 2223333322 22321 122345544443 23344566677788877764
Q ss_pred CCCCChh-------hHHHHHHHH-------HccCChhHHHHHHHHHHh--CCCCCCccc---------------HHHHHH
Q 010853 156 GLTPSLV-------SYNSIVHGL-------CKHGGCMRAYQLLEEGIQ--FGYLPSEHT---------------YKVLVE 204 (499)
Q Consensus 156 g~~p~~~-------~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~ 204 (499)
-+. |.. .|..=|... -+...+..|.++++++.. .|+.....+ |..+|.
T Consensus 167 Pm~-nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 167 PMH-NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred ccc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 222 211 222111111 123456667777777653 233222111 222221
Q ss_pred HHhcCC------C--HHHHHHHHHHHHhCCCCCchhhHHHHHH-------HHhccCC-------hHHHHHHHHHHHhcCC
Q 010853 205 GLCGES------D--LEKARKVLQFMLSKKDVDRTRICNIYLR-------ALCLIKN-------PTELLNVLVFMLQTQC 262 (499)
Q Consensus 205 ~~~~~~------~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~-------~~~a~~~~~~~~~~~~ 262 (499)
-=...+ . -....-++++.+. -..-.+.+|..... .+...|+ .+++..+++.....-.
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll-~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLL-YLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 111100 0 0011112222111 01111122222211 2222333 3445555554443322
Q ss_pred CCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchh
Q 010853 263 QPDVITLNTVINGFCKM---GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 339 (499)
Q Consensus 263 ~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 339 (499)
..+..+|..+...--.. ...+.....++++.......|+ .+|...++...+..-...|..+|.++-+......++.
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf 403 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF 403 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh
Confidence 22333333333221111 1355666677776665443443 4677788888888889999999999654444444778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC--CHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAAMIKG 417 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~ 417 (499)
.++++|..+| .++.+-|.++|+.-.+.- ..++.-....+.-+...++-..++.+|+++...+..+ ...+|..+|..
T Consensus 404 Va~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 404 VAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 8888888765 478899999999766542 3344555667778888999999999999998774444 34589999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCCh
Q 010853 418 LCRSGKIHEAVHFLYELVDSG---VTPNIVCYNVVIDGACKLSMK 459 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~ 459 (499)
-..-|+...+.++-+++...- ..+....-..+++-|.-.+..
T Consensus 482 ES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred HHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 999999999999888876531 122223333444445444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.4e-06 Score=46.10 Aligned_cols=33 Identities=24% Similarity=0.567 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010853 409 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 441 (499)
Q Consensus 409 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 441 (499)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00022 Score=55.36 Aligned_cols=118 Identities=15% Similarity=0.041 Sum_probs=66.8
Q ss_pred cCCHHHHHHHHHHHhccCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH--HhHHHHHHHHHhcCChhh
Q 010853 315 VGRIQEALNLLYQVMPQRGYSP-GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS--TTYAIVIDGLCESNQLDE 391 (499)
Q Consensus 315 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 391 (499)
.++...+...+..+....+-.+ .....-.+...+...|++++|...|+........++. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5556666555655444331111 1122333445566677777777777777765422221 233445666677777777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 392 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 434 (499)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 434 (499)
|...++..... ......+....+.|.+.|++++|...|++.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777664322 223445566667777777777777777653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.4e-05 Score=67.92 Aligned_cols=122 Identities=11% Similarity=0.090 Sum_probs=76.2
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHH
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI--GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 412 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (499)
+.+......+++.+....+.+.+..++.+.+.. ....-..|..++++.|...|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555666666666666666677666666554 111223344566777777777777777776666667777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 456 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (499)
.|++.+.+.|++..|.+++..|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777766666665555555555555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.013 Score=56.86 Aligned_cols=189 Identities=13% Similarity=0.042 Sum_probs=127.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
.+.|+.++|..+++.....+. .|..++..+-..|.+.++.++|..+|+++... .|+......+..+|.+.++
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-------~P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-------YPSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------CCcHHHHHHHHHHHHHHHH
Confidence 899999999999999887653 37888999999999999999999988877654 3455666678888888887
Q ss_pred HhH----HHHHHHhccCCCCCCchhhHHHHHHHHHhc-CC---------hhhHHHHHHHHHhcC-CCCChhhHHHHHHHH
Q 010853 107 VNE----VFRIAEDMPQGKSVNEEFACGHMIDSLCRS-GR---------NHGASRVVYVMRKRG-LTPSLVSYNSIVHGL 171 (499)
Q Consensus 107 ~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~ 171 (499)
+.+ |.+++....++.. ..|+ +++...+. .. ..-|.+.++.+.+.+ .--+..-...-...+
T Consensus 126 yk~qQkaa~~LyK~~pk~~y----yfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 126 YKKQQKAALQLYKNFPKRAY----YFWS-VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHhCCcccc----hHHH-HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 764 5566665544322 3333 33433322 11 123566667766654 222233333445556
Q ss_pred HccCChhHHHHHHHHHH-hCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 010853 172 CKHGGCMRAYQLLEEGI-QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 228 (499)
Q Consensus 172 ~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (499)
...|.+++|+.++..-. +.-..-+...-+.-+..+...+++.+..++-.++..++..
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 67889999999995332 3222223344456677888889999999999888876544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00018 Score=64.81 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 347 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 347 (499)
....++..+...++++.|..+|+++.+.. |+. ...++..+...++..+|.+++.+.+... +.+......-...
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34556666777788888888888888653 443 4456777777788888888888877543 3345555555666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
+.+.++++.|+.+.+++.+.. +.+..+|..|..+|...|+++.|...++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 778888888998888888864 4456688888889999999999888887764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.2e-05 Score=67.63 Aligned_cols=123 Identities=12% Similarity=0.196 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHH
Q 010853 299 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG-YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 377 (499)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 377 (499)
+.+......+++.+....+.+++.+++.+...... ...-..|..++++.|...|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 56788888899999999999999999988654422 22334566799999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 421 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (499)
.|++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988777666666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.013 Score=55.17 Aligned_cols=206 Identities=8% Similarity=0.045 Sum_probs=115.8
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHH------HHHHHHcCCCHhHHHHHHHhccCCC
Q 010853 48 LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN------LVDSLCREGYVNEVFRIAEDMPQGK 121 (499)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~a~~~~~~~~~~~ 121 (499)
.|.+..|..+.....+.-.++.|+..|.+ ...-.|+..-...-.. -...-+--|.+++|.+++-++-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVr----c~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVR----CGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhh----hccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 48888898888777666666666654332 2211122110000000 0111122378888888887776654
Q ss_pred CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcc
Q 010853 122 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS----LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 197 (499)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 197 (499)
. .|..+.+.|++-...++++. -|-..| ...|+.+...+.....|++|.+.|..-..
T Consensus 765 L---------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------- 824 (1189)
T KOG2041|consen 765 L---------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-------- 824 (1189)
T ss_pred h---------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 3 45667777777766665542 111111 23677777777777778888777765321
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 010853 198 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 277 (499)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (499)
....+.++.+..++++.+.+...+ +.+....-.+..++...|.-++|.+.+-+.. . | ...+..|.
T Consensus 825 -~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv 889 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCV 889 (1189)
T ss_pred -hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHH
Confidence 124556666666666655554433 3344556666777777777777766553321 1 1 13355666
Q ss_pred hcCCHHHHHHHHHHH
Q 010853 278 KMGRIEEALKVLNDM 292 (499)
Q Consensus 278 ~~~~~~~a~~~~~~~ 292 (499)
..+++.+|.++-+..
T Consensus 890 ~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHhc
Confidence 667777777665543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00037 Score=58.38 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=60.3
Q ss_pred HHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 010853 383 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 462 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 462 (499)
..+.+++.+|...|.+++...+. |...|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 34456666666666666655433 4555555666666666666666666665554321 334666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHh
Q 010853 463 YQILREMRKNGLNPDAVTWRILDKLH 488 (499)
Q Consensus 463 ~~~~~~m~~~g~~p~~~~~~~l~~~~ 488 (499)
++.|++.++ +.|+..+|..=++..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 666666665 566666665544443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.02 E-value=5e-05 Score=53.31 Aligned_cols=77 Identities=16% Similarity=0.308 Sum_probs=50.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHccC--------ChhHHHHHHHHHHhCCCCCCcccHHH
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGL-TPSLVSYNSIVHGLCKHG--------GCMRAYQLLEEGIQFGYLPSEHTYKV 201 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (499)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|++|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555555777777777777777777 677777777776665532 23346667777777777777777777
Q ss_pred HHHHHh
Q 010853 202 LVEGLC 207 (499)
Q Consensus 202 l~~~~~ 207 (499)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 776554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00013 Score=51.32 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHhHHHH
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACKLS--------MKREAYQILREMRKNGLNPDAVTWRI 483 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~~ 483 (499)
..|..+...+++.....+|+.++..|+ -|+..+|+.++.+.++.. +.-..+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 677777777777665432 23446677777777778888888887
Q ss_pred HHHHhcc
Q 010853 484 LDKLHGN 490 (499)
Q Consensus 484 l~~~~~~ 490 (499)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7766543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.3e-05 Score=43.03 Aligned_cols=29 Identities=41% Similarity=0.781 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010853 445 CYNVVIDGACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 473 (499)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00018 Score=62.65 Aligned_cols=130 Identities=10% Similarity=0.150 Sum_probs=58.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHH
Q 010853 304 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 383 (499)
Q Consensus 304 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (499)
+|..++...-+.+..+.|..+|.++.+......+.....+.+. +...++.+.|..+|+...+. .+.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 3445555555555555555555554433222222222222222 22234444455555555543 233444555555555
Q ss_pred HhcCChhhHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 384 CESNQLDEAKRFWDDIVWPSNIHDN---YVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
...++.+.|+.+|++.... ..++. ..|..++..=.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555433 11111 2455555555555555555555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0022 Score=56.19 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=26.5
Q ss_pred HHHHcc-CChhHHHHHHHHHHhC----CCC-CCcccHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010853 169 HGLCKH-GGCMRAYQLLEEGIQF----GYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 169 ~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
..|... |+++.|.+.|++..+. +.. .-..++..+...+.+.|++++|.++|+++..
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444 5666666666554431 100 0113344455556666666666666666554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00037 Score=63.05 Aligned_cols=92 Identities=10% Similarity=-0.021 Sum_probs=69.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 424 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (499)
...+...|+++.|+..|+++++.. +.+...|..+..+|...|++++|...+++++..... +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 345567788888888888888765 456677777778888888888888888888765543 556777778888888888
Q ss_pred HHHHHHHHHHHHcC
Q 010853 425 HEAVHFLYELVDSG 438 (499)
Q Consensus 425 ~~a~~~~~~~~~~~ 438 (499)
++|...|++....+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887753
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00062 Score=51.90 Aligned_cols=92 Identities=9% Similarity=-0.078 Sum_probs=53.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
.+...+...|++++|.++|+-+...++. +..-|-.|..++-..|++++|+..|......++ -|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 3444455566666666666666544433 444555566666666666666666666666553 25555666666666666
Q ss_pred ChHHHHHHHHHHHH
Q 010853 458 MKREAYQILREMRK 471 (499)
Q Consensus 458 ~~~~a~~~~~~m~~ 471 (499)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00067 Score=50.63 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNI--HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP--NIVCYNVVI 450 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 450 (499)
++..+...+.+.|++++|...++.+...... .....+..+..++.+.|++++|...|+++....... ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555556666666666666666543221 112344456666666666666666666666542221 133455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 010853 451 DGACKLSMKREAYQILREMRKN 472 (499)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~ 472 (499)
.++.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00021 Score=57.10 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=38.0
Q ss_pred CcCHHhHHHHHHHHHh-----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 370 VADSTTYAIVIDGLCE-----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
..+..+|..+++.|.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 4577788888877764 46677777777778788888888888888887754
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00037 Score=49.46 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 010853 377 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 456 (499)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (499)
..+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.++........ +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 33444555556666666666665543322 2344555555666666666666666666554322 334555555666666
Q ss_pred CChHHHHHHHHHHHH
Q 010853 457 SMKREAYQILREMRK 471 (499)
Q Consensus 457 g~~~~a~~~~~~m~~ 471 (499)
|++++|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666665543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.2e-05 Score=53.42 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=41.9
Q ss_pred cCChhhHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 010853 386 SNQLDEAKRFWDDIVWPSNI-HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 464 (499)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 464 (499)
.|+++.|..+++++.+..+. ++...+..+..+|.+.|++++|..++++ .+.+.. +......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666544332 1333444456666666666666666655 222111 22333344556666666666666
Q ss_pred HHHH
Q 010853 465 ILRE 468 (499)
Q Consensus 465 ~~~~ 468 (499)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0051 Score=54.07 Aligned_cols=273 Identities=14% Similarity=0.064 Sum_probs=137.5
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHHhcCCCHH
Q 010853 135 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS-EHTYKVLVEGLCGESDLE 213 (499)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 213 (499)
.+.+..++..|+..+....+..+. +..-|..-...+...|+++++..-.+.-++. +|. .......-.++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 345566677777777777776543 3444555555555666666666555443331 221 123333344444444555
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCC-CCCHhhHHHH-HHHHHhcCCHHHHHHHHHH
Q 010853 214 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC-QPDVITLNTV-INGFCKMGRIEEALKVLND 291 (499)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 291 (499)
+|.+.++.-. .+ ....++..++....... +|...++..+ ..++...|+.++|.++-..
T Consensus 135 ~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 5554444110 00 01111111111111111 1223333322 2344556667776666666
Q ss_pred HhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHH---HH----------HHHHHhcCCHHHHH
Q 010853 292 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN---AV----------LRGLFRLRRVEEAK 358 (499)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l----------l~~~~~~~~~~~a~ 358 (499)
+.+.. ..+....-.--.++-..++.+.+...|.+.+. ..|+...-. .. .+-..+.|.+..|.
T Consensus 195 ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 195 ILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 65543 22222222222233445666667666665442 233322211 11 11234677888888
Q ss_pred HHHHHHhhC---CCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 010853 359 EVFNCMLGI---GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV--YAAMIKGLCRSGKIHEAVHFLYE 433 (499)
Q Consensus 359 ~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~ 433 (499)
+.|.+.+.. ++.++...|.....+..+.|+.++|..-.++....+ +..+ |..-..++...+++++|.+-+++
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887754 334556667667777778888888888777775422 1122 22223345556778888888877
Q ss_pred HHHcC
Q 010853 434 LVDSG 438 (499)
Q Consensus 434 ~~~~~ 438 (499)
..+..
T Consensus 347 a~q~~ 351 (486)
T KOG0550|consen 347 AMQLE 351 (486)
T ss_pred HHhhc
Confidence 76543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00039 Score=49.37 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 421 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (499)
..+...+...|++++|..+++...+.. +.+...+..+..++...++++.|.+.++........ +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 344555566677777777777766543 333455666666667777777777777776654332 334666666777777
Q ss_pred CCHHHHHHHHHHHHHc
Q 010853 422 GKIHEAVHFLYELVDS 437 (499)
Q Consensus 422 g~~~~a~~~~~~~~~~ 437 (499)
|++++|...+.+..+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 7777777777666543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0011 Score=53.18 Aligned_cols=87 Identities=13% Similarity=-0.026 Sum_probs=53.2
Q ss_pred CHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCc--hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 010853 90 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE--EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 167 (499)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 167 (499)
....+..+...+...|++++|...|++..+....++ ...+..+..++.+.|++++|...+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 344566666667777777777777777654432221 345666777777777777777777777665322 34455555
Q ss_pred HHHHHccCCh
Q 010853 168 VHGLCKHGGC 177 (499)
Q Consensus 168 ~~~~~~~~~~ 177 (499)
..++...|+.
T Consensus 113 g~~~~~~g~~ 122 (172)
T PRK02603 113 AVIYHKRGEK 122 (172)
T ss_pred HHHHHHcCCh
Confidence 5566555553
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00061 Score=50.85 Aligned_cols=99 Identities=15% Similarity=0.033 Sum_probs=42.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCC--chhhHHH
Q 010853 54 YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN--EEFACGH 131 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 131 (499)
+..++..+.+.|++++|...+.+++...+. .......+..+..++.+.|++++|...|+.+....+.. ...++..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPK---STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 444444455555555555544444332211 11112233334444555555555555555444332111 1223334
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhc
Q 010853 132 MIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
+..++.+.|+.++|...++.+.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 444444555555555555555444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.83 E-value=3e-05 Score=41.56 Aligned_cols=30 Identities=30% Similarity=0.761 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGV 439 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 439 (499)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 578888888888888888888888877653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0016 Score=52.28 Aligned_cols=83 Identities=11% Similarity=-0.029 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC--HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD--STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++.....+. +...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 44444445555555555555555554321111 234444555555555555555555555443222 233344444444
Q ss_pred HhcCCH
Q 010853 419 CRSGKI 424 (499)
Q Consensus 419 ~~~g~~ 424 (499)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0014 Score=57.10 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG-LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 345 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 345 (499)
.+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..+|+..++.. +.+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 4677888888888889999999999886553 233444444444 333566666899998887654 45566677778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCH---HhHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEAKRFWDDIVWP 402 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 402 (499)
..+...++.+.|..+|+..... +.++. ..|...+..-.+.|+.+.+..+.+++.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888889999999999988876 33332 47888888888888988888888888653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0011 Score=52.97 Aligned_cols=59 Identities=7% Similarity=-0.107 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVA--DSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
..+...+...|++++|...|+........+ ...++..+..++...|++++|...++...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333444444444444444443321111 11233444444444444444444444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0013 Score=59.58 Aligned_cols=94 Identities=12% Similarity=-0.001 Sum_probs=72.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 387 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (499)
....+...|++++|++.|.+++... +.+...|..+..++...|++++|+..++.+.+.. +.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 3456677888888888888877554 3455667777778888888888888888888765 446777888888888888
Q ss_pred ChhhHHHHHHHHhcCCC
Q 010853 388 QLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~ 404 (499)
+++.|...|++.....+
T Consensus 85 ~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 85 EYQTAKAALEKGASLAP 101 (356)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 88888888888876543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0026 Score=60.31 Aligned_cols=143 Identities=15% Similarity=0.018 Sum_probs=85.9
Q ss_pred CCchhhHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc--------CChhhHHHHHHHHhc
Q 010853 335 SPGIVTYNAVLRGLFRL-----RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES--------NQLDEAKRFWDDIVW 401 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 401 (499)
+.+...|...+++.... ++...|..+|++..+.. +-....+..+..++... .+...+.+..+....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45566666666664332 23567777777777753 22334444433333221 112333333333322
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH
Q 010853 402 P-SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 480 (499)
Q Consensus 402 ~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 480 (499)
. ....+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++... +.|...+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 2 123344567767666667788888888888888764 5677788888888888888888888888766 4565555
Q ss_pred HH
Q 010853 481 WR 482 (499)
Q Consensus 481 ~~ 482 (499)
|-
T Consensus 489 ~~ 490 (517)
T PRK10153 489 LY 490 (517)
T ss_pred HH
Confidence 43
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0076 Score=52.85 Aligned_cols=135 Identities=12% Similarity=0.047 Sum_probs=64.3
Q ss_pred HHHhc-CCHHHHHHHHHHHhhC----CCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC-----CCHH-HHHH
Q 010853 347 GLFRL-RRVEEAKEVFNCMLGI----GVVA--DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI-----HDNY-VYAA 413 (499)
Q Consensus 347 ~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~-~~~~ 413 (499)
.|... |+++.|.+.|++..+. + .+ -..++..+...+.+.|++++|.++|+++...... .+.. .|-.
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 5666666666655432 2 11 1234455666677777777777777776543221 1111 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCC--ChhhHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVDSG--VTP--NIVCYNVVIDGACK--LSMKREAYQILREMRKNGLNPDAVTWRILDK 486 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 486 (499)
.+-++...|++..|.+.+++..... +.. .......|+.+|-. ...++.++.-|+.+. +.|..--..|++
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w~~~~l~~ 276 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNWKTKMLLK 276 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHHHHHHHHH
Confidence 3345556677777777777766542 111 12345555655543 223444444444442 345444444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0013 Score=52.53 Aligned_cols=115 Identities=9% Similarity=-0.012 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHh-hCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 010853 354 VEEAKEVFNCML-GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEAVHF 430 (499)
Q Consensus 354 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~ 430 (499)
+..+...+..+. ..+..-....+..+...+...|++++|...+++.......+ ...+|..+...+...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444455553 33322234566777888888999999999999997654332 235788899999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHH-------hcCChHHHHHHHHHH
Q 010853 431 LYELVDSGVTPNIVCYNVVIDGAC-------KLSMKREAYQILREM 469 (499)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~~~~~m 469 (499)
+++....... ...++..+...+. ..|+++.|...+++.
T Consensus 95 ~~~Al~~~~~-~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERNPF-LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhCcC-cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9999876322 3455666666666 788888666666554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=50.81 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHhhCCCC-cCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010853 352 RRVEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 430 (499)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 430 (499)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. ...+.. +....-.+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444555555554443210 1222333344455555555555555544 111111 112222334445555555555554
Q ss_pred HH
Q 010853 431 LY 432 (499)
Q Consensus 431 ~~ 432 (499)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0014 Score=49.94 Aligned_cols=93 Identities=10% Similarity=-0.042 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
.+..-+...|++++|..+|+.+.... +-+..-|..|.-++...|++++|...|......++. |+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 34444667888888888888887765 446666777888888888888888888888776653 6667777888888888
Q ss_pred CHHHHHHHHHHHHHc
Q 010853 423 KIHEAVHFLYELVDS 437 (499)
Q Consensus 423 ~~~~a~~~~~~~~~~ 437 (499)
+.+.|.+.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888877654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0049 Score=52.17 Aligned_cols=112 Identities=12% Similarity=0.054 Sum_probs=81.4
Q ss_pred CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCChhhH
Q 010853 370 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSGVTPNIVCY 446 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 446 (499)
+-|...|..|..+|...|+.+.|..-|....+.... +...+..+..++.... ...++.++|+++...+.. |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 567888888888888888888888888888765433 5566666666655442 356788888888877533 66777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 010853 447 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 485 (499)
Q Consensus 447 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 485 (499)
..|...+...|++.+|...|+.|.+. -|....+..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHH
Confidence 77777888888888888888888874 34445555555
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00024 Score=46.66 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=40.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 419 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
...|++++|+++|+++.+..+. +...+..+..+|.+.|++++|.++++++.. ..|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHH
Confidence 3567777777777777766433 556666677777777777777777777766 34554444444
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.05 Score=48.85 Aligned_cols=433 Identities=12% Similarity=0.097 Sum_probs=227.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhh------HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHH
Q 010853 26 LAITGEMDVAYKVFDEMRHCGVLPNSLT------YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD 99 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (499)
+.+++++.+|.++|.++...- ..++.. -+.++++|...+ ..++...+....+..+. ..|-.+..
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~n-----ld~Me~~l~~l~~~~~~----s~~l~LF~ 85 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNN-----LDLMEKQLMELRQQFGK----SAYLPLFK 85 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhh-----HHHHHHHHHHHHHhcCC----chHHHHHH
Confidence 378899999999999987642 223222 334566664432 23333333333332222 23333443
Q ss_pred H--HHcCCCHhHHHHHHHhccCC--CCC------------CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC----CC
Q 010853 100 S--LCREGYVNEVFRIAEDMPQG--KSV------------NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL----TP 159 (499)
Q Consensus 100 ~--~~~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~----~p 159 (499)
+ +-+.+.+++|.+.+...... +.. +|...-+..++++...|++.++..+++++...=. .-
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 3 34778999999888776544 221 1223335567888999999999999988876532 35
Q ss_pred ChhhHHHHHHHHHcc--------CC-------hhHHHHHHHHHHhC------CCCCCcccHHHHHHHHhcC--CCHHHHH
Q 010853 160 SLVSYNSIVHGLCKH--------GG-------CMRAYQLLEEGIQF------GYLPSEHTYKVLVEGLCGE--SDLEKAR 216 (499)
Q Consensus 160 ~~~~~~~l~~~~~~~--------~~-------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~ 216 (499)
+..+|+.++-.++++ .. ++.+.-...+|... .+.|.......++....-. ....--.
T Consensus 166 ~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~m 245 (549)
T PF07079_consen 166 NSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLM 245 (549)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHH
Confidence 788888765555442 11 12222222333221 1233333333333332221 1222233
Q ss_pred HHHHHHHhCCCCCchh-hHHHHHHHHhccCChHHHHHHHHHHHhcCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 217 KVLQFMLSKKDVDRTR-ICNIYLRALCLIKNPTELLNVLVFMLQTQCQ----PDVITLNTVINGFCKMGRIEEALKVLND 291 (499)
Q Consensus 217 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 291 (499)
++++.....-+.|+.. +...+...+.. +.+++..+-+.+....+. .=..+|..++....+.++...|.+.+.-
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333334444433 33344444433 555555555444433221 1245677888888888888888888776
Q ss_pred HhhCCCCCCCHHHHHH-------HHHHHHc----cCCHHHHHHHHHHHhccCCCCCchh-hHHHHHH---HHHhcCC-HH
Q 010853 292 MVAGKFCAPDAVTFTT-------IIFGLLN----VGRIQEALNLLYQVMPQRGYSPGIV-TYNAVLR---GLFRLRR-VE 355 (499)
Q Consensus 292 ~~~~~~~~~~~~~~~~-------l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~---~~~~~~~-~~ 355 (499)
+..- .|+...-.. +-+..+. ..+..+-+.++.. .+... .|.. ....++. -+-+.|. -+
T Consensus 324 L~~l---dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~-~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~de 397 (549)
T PF07079_consen 324 LKIL---DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE-IQSYD--IDRQQLVHYLVFGAKHLWEIGQCDE 397 (549)
T ss_pred HHhc---CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH-HHhhc--ccHHHHHHHHHHHHHHHHhcCCccH
Confidence 6543 233221111 1111110 1111222333322 22221 1211 1122222 2334454 78
Q ss_pred HHHHHHHHHhhCCCCcCHHhHHHHH----HHHHh---cCChhhHHHHHHHHhcCCCCC----CHHHHHHHHHH--HHhcC
Q 010853 356 EAKEVFNCMLGIGVVADSTTYAIVI----DGLCE---SNQLDEAKRFWDDIVWPSNIH----DNYVYAAMIKG--LCRSG 422 (499)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~--~~~~g 422 (499)
+|..+++.+.+.. +-|...-+.+. .+|.. ...+.+-..+-+-+.+.|+.| +...-|.|.++ +...|
T Consensus 398 kalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 398 KALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 8899998887753 33444333322 23332 223333333434444556554 22344555443 45678
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 423 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++..+ +|+..+++.=
T Consensus 477 ey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 477 EYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred cHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 99988766655554 5789999999988888899999999998764 5666666543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.025 Score=48.12 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=28.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCh-hhH---HHHHHHHhccCCHHHHHHHHHHHHHHhhh
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNS-LTY---SVLVRGVLRTRDVERANVLMFKLWERMKE 83 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (499)
.+.|++++|.+.|+.+.... |+. ... -.++.++.+.+++++|...++++++..|.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 55566666666666665542 221 111 22445555566666666655555555444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00046 Score=44.81 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=26.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 416 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..+...|++++|.+.|+++++.... +...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555544311 344444455555555555555555555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.012 Score=50.08 Aligned_cols=56 Identities=16% Similarity=0.059 Sum_probs=29.7
Q ss_pred HHHHhccCChHHHHHHHHHHHhc--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010853 238 LRALCLIKNPTELLNVLVFMLQT--QCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 293 (499)
Q Consensus 238 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 293 (499)
...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34445555555555555555543 122233445556666666666666666555443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0007 Score=54.20 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=50.6
Q ss_pred CHHhHHHHHHHHHc-----CCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 010853 90 NNAAFANLVDSLCR-----EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 164 (499)
Q Consensus 90 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~ 164 (499)
+..+|..+++.+.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- |. ..+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-NFF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-cHH
Confidence 44555555555543 25555555566666666666666666666655432 1110 00 000
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 010853 165 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210 (499)
Q Consensus 165 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (499)
.++..- --.+-+-|++++++|...|+.||..++..++..+.+.+
T Consensus 109 Q~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 109 QAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 000000 01123446666666666666666666666666665544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0022 Score=53.96 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=73.7
Q ss_pred HHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChh
Q 010853 311 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390 (499)
Q Consensus 311 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (499)
-+.+.+++.+|+..|.+++.-. +-|.+.|..-..+|.+.|.++.|.+-.+..+... +-...+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4667888888888888877543 4456667777788888888888888888887754 334668888888888888888
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAA 413 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~ 413 (499)
+|.+.|++.++ +.|+..+|-.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHH
Confidence 88888888865 4555555543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.059 Score=51.06 Aligned_cols=92 Identities=11% Similarity=-0.039 Sum_probs=50.7
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCc---------
Q 010853 160 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR--------- 230 (499)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 230 (499)
|....-.+...+...|.-++|.+.|-+... | ...+..|...++|.+|.++-+...-..+..-
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll 921 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLL 921 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 555666777778888888888777654311 2 2345566666777777666554321110000
Q ss_pred -hhhHHHHHHHHhccCChHHHHHHHHHHHhc
Q 010853 231 -TRICNIYLRALCLIKNPTELLNVLVFMLQT 260 (499)
Q Consensus 231 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (499)
..-..--+..+.+.|..-.|-+++.+|.+.
T Consensus 922 ~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 922 ADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred hhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 000112245566677776777777666543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00065 Score=44.77 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 010853 407 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS-MKREAYQILREMRK 471 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 471 (499)
+..+|..+...+...|++++|+..|++.++.+.. +...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456677777777777777777777777776433 5566777777777777 57777777777655
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.025 Score=44.08 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=46.7
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC---CCCHHHHH
Q 010853 336 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN---IHDNYVYA 412 (499)
Q Consensus 336 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~ 412 (499)
|++..-..+..+....|+..+|...|.+...--..-|....-.+.++....+++..|...++++.+..+ .|| ..-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 344334444445555555555555555544433333444444455555555555555555555443221 122 223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.+.+.+...|++.+|..-|+...+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 3444555555555555555555544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.016 Score=55.22 Aligned_cols=66 Identities=14% Similarity=-0.016 Sum_probs=44.2
Q ss_pred cCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 371 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 371 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
.+...+..+.-.....|++++|...++++...+ |+...|..+...+...|+.++|.+.+++....+
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344556655555555677777777777776554 456677777777777777777777777776653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=43.09 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=41.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 379 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
+...+...|++++|...|+.+++..+. +...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667778888888888887766533 6667777777888888888888888777765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.011 Score=43.40 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCCHHHHHHHHHHHHcc
Q 010853 239 RALCLIKNPTELLNVLVFMLQTQCQPD--VITLNTVINGFCKMGRIEEALKVLNDMVAGKFC-APDAVTFTTIIFGLLNV 315 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 315 (499)
.++-..|+.++|+.+|++....|+... ...+-.+...+...|++++|..+|++....... .-+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455666666666666665554432 223445556666677777777777766654210 00122222233455566
Q ss_pred CCHHHHHHHHHHHh
Q 010853 316 GRIQEALNLLYQVM 329 (499)
Q Consensus 316 ~~~~~a~~~~~~~~ 329 (499)
|+.++|+..+-..+
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777766665543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.016 Score=47.82 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH--
Q 010853 303 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI-- 380 (499)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-- 380 (499)
.....++..+.-.+.+.-..+.+.+.++ ..-+.++.....+++.-.+.||.+.|...|+...+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3345566666667777777787777554 3334456677777777788888888888888776543344444444333
Q ss_pred ---HHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 010853 381 ---DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 450 (499)
Q Consensus 381 ---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 450 (499)
..|.-.+++..|...+.++...+.. |....|.-.-+..-.|+..+|++.++.|+.. .|...+-++++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 3455567777888888777766544 4444454444555667888888888888876 34444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.025 Score=43.90 Aligned_cols=73 Identities=16% Similarity=0.299 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHhHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-----KNGLNPDAVTWRI 483 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~~~ 483 (499)
+...++..+...|++++|.++.+.+....+ .+...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 456667777788888888888888888753 377788888888888888888888888774 3688888766544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.044 Score=42.80 Aligned_cols=102 Identities=12% Similarity=0.181 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CcCHHhHH
Q 010853 299 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-VADSTTYA 377 (499)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 377 (499)
.|+...--.+..++...|+..+|...|.+.+ ..-+..|......+.++....+++..|...++++.+... .-++.+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3444444455555555555555555555533 222334444455555555555555555555555544320 00112233
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhc
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVW 401 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~ 401 (499)
.+.+++...|.++.|+.-|+....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 344555555555555555555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.019 Score=48.76 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=71.9
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC---ChhhHHHHHHHHhcCCCCCCHHHH
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN---QLDEAKRFWDDIVWPSNIHDNYVY 411 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 411 (499)
+-|...|..|..+|...|+++.|..-|....+.. +++...+..+..++.... ...++..+++++...+.. |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 4566777778888888888888888887777754 456666666666554432 345677788887766544 66666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
.-|...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 677777778888888888888887763
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.17 Score=49.21 Aligned_cols=179 Identities=9% Similarity=0.002 Sum_probs=103.0
Q ss_pred ChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH
Q 010853 18 PVASLTSALAITGEMDVAYKVFDEMRHCGVLPN--SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 95 (499)
Q Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (499)
+..+-+..+.+...++-|+.+...-.. .++ .........-+.+.|++++|...|-+.+.. +.|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~---d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~------le~s----- 401 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL---DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF------LEPS----- 401 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc------CChH-----
Confidence 445556666777777777766554322 122 122333445566788888887766444322 2222
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
.++.-+.......+-...++.+.+.|. .+...-+.|+.+|.+.++.++-.+..+... .|.- ..-....+..+.+.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 266666666666666777777777776 344445668888888888777666655444 2211 112445666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHH
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 222 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 222 (499)
-.++|.-+-..... ....... .+-..+++++|.+.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 66666655443322 2222222 334567788888887655
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0083 Score=44.11 Aligned_cols=92 Identities=16% Similarity=0.118 Sum_probs=54.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHH
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPN--SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS 100 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (499)
...+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++.+.....+.+ .. +......+..+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~-~~--~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD-EL--NAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cc--cHHHHHHHHHH
Confidence 3444667888888888888877765443 2345556667777777777777776666554432 11 22222223345
Q ss_pred HHcCCCHhHHHHHHHhc
Q 010853 101 LCREGYVNEVFRIAEDM 117 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~ 117 (499)
+...|+.++|++.+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 56666776666655443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00082 Score=44.11 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=24.7
Q ss_pred cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 386 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.|++++|.++++.+....+. +...+..+..+|.+.|++++|.++++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555555555555443332 4444444555555555555555555555443
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.018 Score=47.53 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=12.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh
Q 010853 202 LVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
+...|.+.|.+..|..-++.+++
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 44455666666666666666553
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0034 Score=55.08 Aligned_cols=133 Identities=8% Similarity=-0.002 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH----hhCCCC-cCHHhHHHHHHHHHhcCChhhHHHHHHHHh----cCCC-CCCH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCM----LGIGVV-ADSTTYAIVIDGLCESNQLDEAKRFWDDIV----WPSN-IHDN 408 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~-~~~~ 408 (499)
..|..+...|.-.|+++.|+...+.- ++.|-. .....+..|.++++-.|+++.|.+.|+... +.+- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666666666778999998776543 233322 123467788889999999999999887653 2222 1233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 409 YVYAAMIKGLCRSGKIHEAVHFLYELVD----S-GVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 409 ~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.+.-+|...|.-..++++|+.++++-.. . +..-....+.+|..+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3556778888888889999988766432 1 1122456788899999999999999988877653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=42.96 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=46.1
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG-KIHEAVHFLYELVDS 437 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~ 437 (499)
+..+|..+...+...|++++|...|++.++.++. +...|..+..++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3456677777777777777777777777765543 5567777777777777 677777777776654
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.13 Score=45.61 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
+.+..|.-+...|+...|.++-.+.. .|+..-|..-+.+++..+++++...+-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 33344444555566555555544442 34555566666666666666655554322 112234566666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 010853 420 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 465 (499)
Q Consensus 420 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 465 (499)
+.|+..+|..++.++ .+..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 666666666555441 123444455556666555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.099 Score=49.18 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=48.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--------
Q 010853 373 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV-------- 444 (499)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------- 444 (499)
..+...+...+.+...+..|-++|.++-. ...++......+++++|..+-++..+. .||+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 33444444445555566666666666521 234555566666677766666554432 22221
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 445 ---CYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 445 ---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
-|.-.-++|.++|+-.+|.++++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 234445567777777777777777643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.079 Score=49.79 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=20.6
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010853 148 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 186 (499)
Q Consensus 148 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (499)
-+++++++|-.|+... +...++-.|.+.+|-++|.+
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 3455666666666543 23445556666666666654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.1 Score=46.74 Aligned_cols=179 Identities=12% Similarity=0.013 Sum_probs=98.9
Q ss_pred HHhHHHHHHHHHcCCCHhHHHHHHHhccCCC---CCCchhhHHHHHHHHHh---cCChhhHHHHHHHHHhcCCCCChhhH
Q 010853 91 NAAFANLVDSLCREGYVNEVFRIAEDMPQGK---SVNEEFACGHMIDSLCR---SGRNHGASRVVYVMRKRGLTPSLVSY 164 (499)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~g~~p~~~~~ 164 (499)
..+...++-+|....+++..+++.+.+.... +......-....-++-+ .|+.++|++++..+......+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344566677888999999999999987652 21222233344556666 78999999999886666667788888
Q ss_pred HHHHHHHHc---------cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHH
Q 010853 165 NSIVHGLCK---------HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 235 (499)
Q Consensus 165 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (499)
..+.+.|-. ....++|...|.+.-+. .|+...-..++..+...|.-.....-++++. .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~-----------~ 287 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIG-----------V 287 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHH-----------H
Confidence 888877643 11345566666554332 2333322222222222222111110011110 0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010853 236 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 295 (499)
Q Consensus 236 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 295 (499)
.+-....+.|.. ....+-..+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 288 ~l~~llg~kg~~-------------~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 288 KLSSLLGRKGSL-------------EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHhhccc-------------cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 000011111111 11234455677777888888888888888888765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0056 Score=52.43 Aligned_cols=90 Identities=10% Similarity=-0.002 Sum_probs=48.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNS----LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 102 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (499)
.+.|++++|+..|+.+.... |+. .++..+..++...|++++|...|..++...+.. ......+..++..+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---~~~~dAl~klg~~~~ 228 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---PKAADAMFKVGVIMQ 228 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cchhHHHHHHHHHHH
Confidence 34566666666666666542 332 355556666666666666666666655544432 112233333444555
Q ss_pred cCCCHhHHHHHHHhccCCC
Q 010853 103 REGYVNEVFRIAEDMPQGK 121 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~ 121 (499)
..|+.++|.+.|+.+.+..
T Consensus 229 ~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 5556666655555554433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.023 Score=46.96 Aligned_cols=161 Identities=11% Similarity=0.002 Sum_probs=114.3
Q ss_pred HhcCCh-HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCC
Q 010853 27 AITGEM-DVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 105 (499)
Q Consensus 27 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (499)
.+++.. +.-++++++=.. ...+.+++.+...|.+.-...++.+++++-+ ..++.....|++.-.+.|
T Consensus 159 ~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~-----e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 159 LEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYP-----EQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCC-----cccHHHHHHHHHHHHhcc
Confidence 444444 556666665433 4677888888889999888888888887543 347788889999999999
Q ss_pred CHhHHHHHHHhccCCCCCCchhhHHHH-----HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHH
Q 010853 106 YVNEVFRIAEDMPQGKSVNEEFACGHM-----IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 180 (499)
Q Consensus 106 ~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a 180 (499)
|.+.|...|++..+..-..+...++.+ ...+.-.+++..|...+.++...+.. |+..-|.-.-+..-.|+...|
T Consensus 227 D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHH
Confidence 999999999977655444444444333 34466678888899999888887543 555555555555567889999
Q ss_pred HHHHHHHHhCCCCCCcccHHHH
Q 010853 181 YQLLEEGIQFGYLPSEHTYKVL 202 (499)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~l 202 (499)
++.++.|+.. .|...+-+++
T Consensus 306 iK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 306 LKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHhcc--CCccchhhhH
Confidence 9999999874 4555444433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0046 Score=41.19 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=37.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHH
Q 010853 416 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 481 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 481 (499)
..|.+.+++++|.++++.+...++. +...+.....++.+.|++++|.+.++...+ ..|+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHH
Confidence 3455666666666666666665433 455555566666666666666666666665 33444433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.013 Score=50.23 Aligned_cols=96 Identities=13% Similarity=-0.007 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHHHH
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT--PNIVCYNVVID 451 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 451 (499)
|...+..+.+.|++++|...|+.+++..+... ...+..+..+|...|++++|...|+.+.+.... .....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445666666666666654433211 234555666666666666666666666654211 11233444445
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010853 452 GACKLSMKREAYQILREMRK 471 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~ 471 (499)
.+...|+.++|.+++++..+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55566667777777666655
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.002 Score=43.63 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC-HHhHHHHHHHHHcCCCHhHHHHHHHhc
Q 010853 51 SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFANLVDSLCREGYVNEVFRIAEDM 117 (499)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 117 (499)
..+|+.+...+...|++++|...+.+.++.....+...+. ..++..+..++...|++++|++.+++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567888888889999999998888887763333222333 456667777777777777777776654
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.2 Score=45.21 Aligned_cols=392 Identities=14% Similarity=0.125 Sum_probs=197.5
Q ss_pred HhcCChHHHHHHHHHHHhC--CCCC------------ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH
Q 010853 27 AITGEMDVAYKVFDEMRHC--GVLP------------NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 92 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
-+.+++.+|++.+....+. +..| |-..=+..+..+...|++.+++.++.+++.++-.. ...++..
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkr-E~~w~~d 168 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKR-ECEWNSD 168 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhh-hhcccHH
Confidence 6777888888877777654 2222 11122335567777888888888888877777655 6667777
Q ss_pred hHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 010853 93 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 172 (499)
Q Consensus 93 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 172 (499)
+|+.++-.+++.=-++ +-+. ...+.-|+ |--++..|.+.=.. ++.-.-..+.|-......++....
T Consensus 169 ~yd~~vlmlsrSYfLE----l~e~-~s~dl~pd---yYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLE----LKES-MSSDLYPD---YYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHHHHhHHHHHH----HHHh-cccccChH---HHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHH
Confidence 7777665554421111 1111 11122222 11233333221100 000000011222222222222221
Q ss_pred c--cCChhHHHHHHHHHHhCCCCCCccc-HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC----chhhHHHHHHHHhccC
Q 010853 173 K--HGGCMRAYQLLEEGIQFGYLPSEHT-YKVLVEGLCGESDLEKARKVLQFMLSKKDVD----RTRICNIYLRALCLIK 245 (499)
Q Consensus 173 ~--~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~ 245 (499)
- ..+..--.++++.....-+.|+-.. ...+...+.. +.+++..+.+.+......+ -...+..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112222333333333344454322 2233333333 5555555555554322111 1235667777777788
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhhH-------HHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCH-HHHHHH---HH
Q 010853 246 NPTELLNVLVFMLQTQCQPDVITL-------NTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDA-VTFTTI---IF 310 (499)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l---~~ 310 (499)
+...|.+.+.-+.--.+ +...- ..+-+..+. .-+...-+.+++.+...+. |. ..-..+ ..
T Consensus 313 ~T~~a~q~l~lL~~ldp--~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di---DrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 313 QTEEAKQYLALLKILDP--RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI---DRQQLVHYLVFGAK 387 (549)
T ss_pred hHHHHHHHHHHHHhcCC--cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc---cHHHHHHHHHHHHH
Confidence 88888777766654432 22111 111222221 1122333445555544321 21 111112 23
Q ss_pred HHHccCC-HHHHHHHHHHHhccCCCCCchhhHHHHH----HHHH---hcCCHHHHHHHHHHHhhCCCCcC----HHhHHH
Q 010853 311 GLLNVGR-IQEALNLLYQVMPQRGYSPGIVTYNAVL----RGLF---RLRRVEEAKEVFNCMLGIGVVAD----STTYAI 378 (499)
Q Consensus 311 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~ll----~~~~---~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 378 (499)
-+-+.|. -++|+++++.++.-. +-|..+-+.+. .+|. ....+.+-..+-+-+.+.|++|- ...-|.
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 3444555 778888887755332 22333322222 2222 12345556666666677787763 334555
Q ss_pred HHHH--HHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010853 379 VIDG--LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 379 l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 449 (499)
|.++ +...|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..++..+ +|+..+++.=
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 5544 4568999888766555533 5789999999999999999999999999875 6777777653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.19 Score=44.75 Aligned_cols=92 Identities=14% Similarity=0.062 Sum_probs=55.4
Q ss_pred HHHccCCHHHHHHHHHHHhccC--CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC
Q 010853 311 GLLNVGRIQEALNLLYQVMPQR--GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 311 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (499)
-..+.|++..|.+.|.+.+... ++.|+...|.....+..+.|+.++|+.--+...+.. +.-...+..-..++...++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHH
Confidence 3456788888888887765332 233445556666666677788888887777776542 1111222223345556677
Q ss_pred hhhHHHHHHHHhcCC
Q 010853 389 LDEAKRFWDDIVWPS 403 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~ 403 (499)
+++|.+-++...+..
T Consensus 337 ~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHhhc
Confidence 788877777775443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.34 Score=46.71 Aligned_cols=118 Identities=13% Similarity=0.171 Sum_probs=87.7
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHH
Q 010853 332 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 411 (499)
Q Consensus 332 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 411 (499)
.+..-...+.+--+..+...|+..+|.++-.+.+ -||...|..=+.+++..+++++-+++-+... ++.-|
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy 747 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGY 747 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCc
Confidence 3333344456666777888899999998877764 5788888888999999999998887766553 23457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 468 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (499)
..+..+|.+.|+.++|.+++.+... . .-.+.+|.+.|++.+|.++.-+
T Consensus 748 ~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHH
Confidence 8888999999999999988865421 1 1567788889998888776543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.06 Score=44.50 Aligned_cols=168 Identities=15% Similarity=0.044 Sum_probs=93.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHH
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVL--PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 102 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (499)
.....|++.+|++.|+.+...... --....-.++.++.+.|++..|...+.++++..|..+. .+ ..+-.+..++.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~--~A~Y~~g~~~~ 90 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-AD--YALYMLGLSYY 90 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HH--HHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hh--hHHHHHHHHHH
Confidence 338899999999999999875311 12344556778899999999999999988888776521 11 12222222211
Q ss_pred cC-----------CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 010853 103 RE-----------GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 171 (499)
Q Consensus 103 ~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 171 (499)
.. +...+|... +..++.-|=...-..+|...+..+.+. =...--.+...|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 11 111223333 333444444444445555555444432 111112356778
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHhcCCCHHHHH
Q 010853 172 CKHGGCMRAYQLLEEGIQFGYLPSE----HTYKVLVEGLCGESDLEKAR 216 (499)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 216 (499)
.+.|.+..|..-++.+++.- |+. .....++.++.+.|..+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88889999888888887752 333 34566777777777776443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.097 Score=40.47 Aligned_cols=87 Identities=9% Similarity=-0.029 Sum_probs=47.7
Q ss_pred HHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 010853 383 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 462 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 462 (499)
+...|++++|..+|+-+...++. +..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 34456666666666655544333 344455555555556666666666655544432 2444444555556666666666
Q ss_pred HHHHHHHHH
Q 010853 463 YQILREMRK 471 (499)
Q Consensus 463 ~~~~~~m~~ 471 (499)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666665554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.25 Score=43.64 Aligned_cols=289 Identities=15% Similarity=0.072 Sum_probs=172.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh--cCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHH
Q 010853 174 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC--GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 251 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 251 (499)
.|+-..|.+.-.+..+ -+..|...+..++.+-. -.|+++.|.+-|+.|... ......-...+.-...+.|+.+.|.
T Consensus 97 AGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 4566666665554432 13345555555555433 468888888888888631 1111112233333445678888888
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHH--HHHHHHHH---ccCCHHHHHHHHH
Q 010853 252 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF--TTIIFGLL---NVGRIQEALNLLY 326 (499)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~---~~~~~~~a~~~~~ 326 (499)
++-+..-..-.. -...+...+...+..|+++.|+++++.-.....+.++..-- ..|+.+-. -..+...|.+.-.
T Consensus 175 ~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 777766555332 34566778888889999999999998877766556654322 22222211 1223444544332
Q ss_pred HHhccCCCCCchhh-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhc-CCC
Q 010853 327 QVMPQRGYSPGIVT-YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW-PSN 404 (499)
Q Consensus 327 ~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~ 404 (499)
+..++.||..- -.....++.+.|+..++-.+++.+-+.. |.+.++... .+.+.|+ .+..-+++..+ ...
T Consensus 254 ---~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~sl 324 (531)
T COG3898 254 ---EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLY--VRARSGD--TALDRLKRAKKLESL 324 (531)
T ss_pred ---HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhc
Confidence 34455666432 2233467889999999999999999874 444443322 3445555 33333332211 112
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCC
Q 010853 405 IH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA-CKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 405 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
+| +..+-..+.++-...|++..|..--+..... .|....|..|.+.- ...|+-.++...+.+..+.--.|
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 22 4556667778888889998887776666554 67777887777764 44599999999988887643333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.038 Score=46.39 Aligned_cols=100 Identities=17% Similarity=0.122 Sum_probs=74.0
Q ss_pred hhHHHHH--HhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH
Q 010853 20 ASLTSAL--AITGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 95 (499)
Q Consensus 20 ~~~~~~~--~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (499)
..|...+ .+.|++..|.+.|...++... ...+..+.-|..++...|++++|...|..+.+..++. .--+..+-
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApdall 219 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDALL 219 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHHHH
Confidence 3566666 788999999999999888641 1134456678889999999999988888887766654 22335666
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCC
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKS 122 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~ 122 (499)
-|..+..+.|+-++|...|+.+.+.-+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 677778888888888888888877654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.47 Score=45.78 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=55.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHH
Q 010853 304 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 383 (499)
Q Consensus 304 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (499)
+.+--+.-+...|+-.+|.++-.+. + -||...|-.-+.+++..+++++-+++-+.... +.-|.-.+.+|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~F-k----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDF-K----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhc-C----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHH
Confidence 3334444445555555555544331 1 34555555555566666666655555443321 23345555666
Q ss_pred HhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010853 384 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 431 (499)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 431 (499)
.+.|+.++|..++.+... . .....+|.+.|++.+|.++-
T Consensus 755 ~~~~n~~EA~KYiprv~~--l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG--L-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccCC--h-------HHHHHHHHHhccHHHHHHHH
Confidence 666666666666655521 1 13445566666666665544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.024 Score=42.22 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHh--------------hCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMV--------------AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
.++..++.++++.|+.+....+++..= ......|+..+..+++.+|+..+++..|+++++...+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 445555566666666655555554332 111123444444444444444444444444444444444
Q ss_pred CCCCchhhHHHHHH
Q 010853 333 GYSPGIVTYNAVLR 346 (499)
Q Consensus 333 ~~~~~~~~~~~ll~ 346 (499)
+++.+..+|..|++
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 44444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.013 Score=51.57 Aligned_cols=265 Identities=15% Similarity=0.103 Sum_probs=148.9
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHH--HH-hhhccCCccCHHhHHHH
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVLPNS----LTYSVLVRGVLRTRDVERANVLMFKLW--ER-MKEEEDLSVNNAAFANL 97 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~~~~~~~~~~l 97 (499)
.+++.|+....+.+|+...+.|. -|. .+|+.|..+|.-.+++++|.+.+..=+ .+ +....+ ...+...|
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG---EAKssgNL 101 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG---EAKSSGNL 101 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc---cccccccc
Confidence 34999999999999999999873 333 456678888888999999987643211 11 111101 11122225
Q ss_pred HHHHHcCCCHhHHHHHHHhc----cCCC-CCCchhhHHHHHHHHHhcCC--------------------hhhHHHHHHHH
Q 010853 98 VDSLCREGYVNEVFRIAEDM----PQGK-SVNEEFACGHMIDSLCRSGR--------------------NHGASRVVYVM 152 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~ 152 (499)
.+.+--.|.+++|+-...+- .+.| ......++-.+...|...|+ ++.|.+.|.+-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 55555567777775433221 1111 11222344446666655442 22344444332
Q ss_pred Hh----cCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHH----hCCCCC-CcccHHHHHHHHhcCCCHHHHHHHHHHH
Q 010853 153 RK----RGLT-PSLVSYNSIVHGLCKHGGCMRAYQLLEEGI----QFGYLP-SEHTYKVLVEGLCGESDLEKARKVLQFM 222 (499)
Q Consensus 153 ~~----~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 222 (499)
.+ .|-. .--..|..|...|.-.|+++.|+...+.-. +.|-+. ....+..+..+++-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 21 1100 011234445555555678888877655422 222111 2356677778888888888888888765
Q ss_pred Hh----CC-CCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcC-----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 223 LS----KK-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-----CQPDVITLNTVINGFCKMGRIEEALKVLNDM 292 (499)
Q Consensus 223 ~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 292 (499)
.. .+ .......+..+...|.-..++++|+.++..-+..- .--....+-+|..+|...|..++|+.+.+.-
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 32 11 22234456667777777777888887765433210 1113445667778888888888887776654
Q ss_pred h
Q 010853 293 V 293 (499)
Q Consensus 293 ~ 293 (499)
.
T Consensus 342 l 342 (639)
T KOG1130|consen 342 L 342 (639)
T ss_pred H
Confidence 4
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.39 Score=43.38 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=111.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHH-HHHH
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY-AAMI 415 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li 415 (499)
...|...+.+-.+..-.+.|..+|-++.+.| +.++..++++++..++ .|+...|..+|+.-... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456777777778888999999999999988 5678888899887655 58889999999865543 2344444 5677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhccc
Q 010853 416 KGLCRSGKIHEAVHFLYELVDSGVTPN--IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 491 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 491 (499)
..+...++-+.|..+|+..+.. +..+ ...|..+|..-..-|+...+..+-++|.. +.|...+...+..-|+-.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik 548 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence 7888889999999999966543 1222 45889999888889999999988888876 566666666666555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.015 Score=48.58 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=34.7
Q ss_pred CcCHHhHHHHHHHHHh-----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 370 VADSTTYAIVIDGLCE-----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
.-|..+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 3466666666666643 35566666777777777777788888887777654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.042 Score=40.89 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=44.2
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhc---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVW---------------PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
|..++..++.++++.|+.+....+++..=. ....|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456778888888888888888888876521 11223444444444444444455555444444433
Q ss_pred -cCCCCChhhHHHHHH
Q 010853 437 -SGVTPNIVCYNVVID 451 (499)
Q Consensus 437 -~~~~~~~~~~~~l~~ 451 (499)
.+++.+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 233333444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.37 Score=42.76 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=11.7
Q ss_pred HHHHHHHHhccCCHHHHHHH
Q 010853 54 YSVLVRGVLRTRDVERANVL 73 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~ 73 (499)
|..+.......|+..-|..+
T Consensus 3 ~a~IA~~A~~~GR~~LA~~L 22 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKL 22 (319)
T ss_pred HHHHHHHHHHcChHHHHHHH
Confidence 45555556666666666553
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.26 Score=42.03 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=90.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHh
Q 010853 59 RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 138 (499)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 138 (499)
......|++.+|..++..++...++. ...-..+..++...|+++.|..++..+..............-|..+.+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPEN------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCccc------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 45567788888888888887766554 233444778888888888888888888765433333333344555666
Q ss_pred cCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC-CCCcccHHHHHHHHhcCCC
Q 010853 139 SGRNHGASRVVYVMRKRGLTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY-LPSEHTYKVLVEGLCGESD 211 (499)
Q Consensus 139 ~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 211 (499)
.....+...+-...... | |...-..+...+...|+.+.|++.+-.+.+... .-|...-..++..+.-.|.
T Consensus 216 aa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 216 AAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 66666555555555543 3 555556677777778888888777666654321 1234444555555555553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=45.41 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=40.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 92 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
...|+++.|.++++.+.... +.+...|..++.++...|+..+|...|.++...+.+.-|+.|+..
T Consensus 73 ~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 56677777777777777654 346667777777777777777777777777666665556666654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0087 Score=40.46 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CC-hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDS----GVT-PN-IVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+|+.+..+|...|++++|+..|++..+. |-. |+ ..++..+..+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666667777776666666532 111 11 3456666666777777777777776654
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.013 Score=39.05 Aligned_cols=49 Identities=29% Similarity=0.294 Sum_probs=19.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010853 277 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 327 (499)
Q Consensus 277 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 327 (499)
.+.++++.|.++++.+.... +.+...+.....++.+.|++.+|...+.+
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHH
Confidence 33444444444444443332 22333333333344444444444444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.59 Score=41.51 Aligned_cols=279 Identities=15% Similarity=0.091 Sum_probs=175.3
Q ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHhCCCCCchhhHHHHH--HHHhccCChHHHHHHHHHHHhcCCCCCHh--hHHHH
Q 010853 199 YKVLVEGLC--GESDLEKARKVLQFMLSKKDVDRTRICNIYL--RALCLIKNPTELLNVLVFMLQTQCQPDVI--TLNTV 272 (499)
Q Consensus 199 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l 272 (499)
|..|-.++. ..|+-..|.++-.+..+ -...+..-.-.++ ++-.-.|+++.|.+-|+.|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444443 46788888887776542 2333333333333 3444589999999999999854 2221 12233
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhh--HHHHHHHHH-
Q 010853 273 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT--YNAVLRGLF- 349 (499)
Q Consensus 273 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~- 349 (499)
.-.-.+.|..+.|.+.-+.....- +.-...+...+...+..|+++.|+++++......-+.++..- -..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333456789999999888877653 344677888999999999999999999886655555565432 222332221
Q ss_pred --hcCCHHHHHHHHHHHhhCCCCcCHHh-HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010853 350 --RLRRVEEAKEVFNCMLGIGVVADSTT-YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 426 (499)
Q Consensus 350 --~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 426 (499)
-..+...|...-.+..+. .||..- --.-..++.+.|+..++-.+++.+-+..+.|+. +. +..+.+.|+ .
T Consensus 239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--t 310 (531)
T COG3898 239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--T 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--c
Confidence 123566666666655553 455432 223356789999999999999999776666553 32 223445555 3
Q ss_pred HHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhccc-CC
Q 010853 427 AVHFLYELVDS-GVTP-NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR-GN 493 (499)
Q Consensus 427 a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~ 493 (499)
++.-+++.... .++| +....-.+..+-...|++..|..--+...+ ..|....|-.|.+.-... ||
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGD 378 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGD 378 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCc
Confidence 44444443321 1233 455666777888889999888777776655 678888888777665433 54
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.042 Score=48.68 Aligned_cols=99 Identities=11% Similarity=-0.061 Sum_probs=51.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhhccCCcc---------CHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCch
Q 010853 56 VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV---------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 126 (499)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 126 (499)
.-.+.+.+.|++..|...|.+++..+.......+ -..++..+.-++.+.+++.+|++..+.....+. +|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cch
Confidence 3445788889999999888888777764433322 112333344444444444444444444444433 333
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 127 FACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
.+.-.-..++...|+++.|...|+.+.+.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 33333344444444444444444444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.68 Score=41.71 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHhccCCCCCchhhHHHH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFC--APDAVTFTTIIFGLLN---VGRIQEALNLLYQVMPQRGYSPGIVTYNAV 344 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 344 (499)
..++-.|....+++...++.+.+.....+ ......-.....++.+ .|+.++|++++...+ .....+++.+|..+
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l-~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL-ESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH-hccCCCChHHHHHH
Confidence 33444566666677777777666653211 0111222233344444 666666666666532 22223444455555
Q ss_pred HHHH
Q 010853 345 LRGL 348 (499)
Q Consensus 345 l~~~ 348 (499)
...|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 5444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.084 Score=40.80 Aligned_cols=87 Identities=10% Similarity=-0.041 Sum_probs=61.8
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 427 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 427 (499)
+...|++++|..+|.-+...+ +-+..-+..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 456788888888888777655 345666677777777788888888888776544332 333455567778888888888
Q ss_pred HHHHHHHHH
Q 010853 428 VHFLYELVD 436 (499)
Q Consensus 428 ~~~~~~~~~ 436 (499)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888877776
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.49 Score=41.49 Aligned_cols=61 Identities=11% Similarity=-0.004 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhcCCCCChh--hHHHHHHHHHccCC--hhHHHHHHHHHHhCCCCCCcccHHHHH
Q 010853 143 HGASRVVYVMRKRGLTPSLV--SYNSIVHGLCKHGG--CMRAYQLLEEGIQFGYLPSEHTYKVLV 203 (499)
Q Consensus 143 ~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 203 (499)
+.+..+|+.+.+.|...+.. ....++..+..... ...+.++++.+.+.|+++....|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 44566666666655543322 22222222221111 335666677777777666665555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.07 Score=48.54 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=73.6
Q ss_pred CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 010853 370 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 447 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (499)
+.+...++.+..+|...|++++|...|++.++.++.... .+|..+..+|...|+.++|++.+++.++.+ .+ .|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 446778999999999999999999999998876544221 468999999999999999999999998852 11 232
Q ss_pred HHHH--HHHhcCChHHHHHHHHHHHHCCCC
Q 010853 448 VVID--GACKLSMKREAYQILREMRKNGLN 475 (499)
Q Consensus 448 ~l~~--~~~~~g~~~~a~~~~~~m~~~g~~ 475 (499)
.+.. .+....+..+..++++.+.+.|..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 2111 112233445677788888777653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.31 Score=35.86 Aligned_cols=64 Identities=14% Similarity=0.267 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 440 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 440 (499)
....+......|.-+.-.+++.++.+ +-.+++...-.+..+|.+.|+..++.+++.++.+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34444555556666666666666543 23445555556666666666666666666666666543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.32 Score=35.81 Aligned_cols=139 Identities=18% Similarity=0.219 Sum_probs=79.7
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHH
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 393 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 393 (499)
-.|..++..+++.+..... +..-+|.+|--....-+-+ .+++.+...|--.|. ..+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~---yvv~~LdsIGkiFDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCD---YVVETLDSIGKIFDI----------SKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HH---HHHHHHHHHGGGS-G----------GG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC----Cccccceeeeecchhhchh---HHHHHHHHHhhhcCc----------hhhcchHHHH
Confidence 4566777777777655443 3334444443222222333 333333333322222 2345555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010853 394 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 473 (499)
..+-.+ ..+.......+..+..+|+-+.-.+++.++.+. -.+++...-.+..||.+.|+..++-+++.++.+.|
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 554443 224455677788889999999999999998763 36788899999999999999999999999999998
Q ss_pred CC
Q 010853 474 LN 475 (499)
Q Consensus 474 ~~ 475 (499)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.53 Score=44.62 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=75.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHhHHHH-HHHHHhcCChhhHHHHHHHHhcCCC---CCCHHHHHHHHHHHHhcCCHHH
Q 010853 351 LRRVEEAKEVFNCMLGIGVVADSTTYAIV-IDGLCESNQLDEAKRFWDDIVWPSN---IHDNYVYAAMIKGLCRSGKIHE 426 (499)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 426 (499)
..+.+.|.+++..+.+. -|+...|... .+.+...|++++|.+.+++...... +.....+-.+..++...+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34677888888888875 4565554433 4556678888888888887653111 1223345556667778888999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCh-------HHHHHHHHHHH
Q 010853 427 AVHFLYELVDSGVTPNIVCYNVVIDG-ACKLSMK-------REAYQILREMR 470 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~m~ 470 (499)
|.+.|..+.+.+ ..+..+|..+..+ +...|+. ++|.+++.+..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999988888764 2244455444433 3456666 77777777764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.14 Score=46.73 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=57.0
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH----HhHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS----TTYAIVIDGLCESNQLDEAKRFWDDIVWP 402 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 402 (499)
+.+...++.+..+|...|++++|+..|++..+.. |+. .+|..+..+|...|+.++|...++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999999999998864 443 35899999999999999999999999864
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.23 Score=46.26 Aligned_cols=129 Identities=14% Similarity=0.106 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 010853 269 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 348 (499)
Q Consensus 269 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 348 (499)
.+.++..+.+.|..+.|+++..+-. .-.....+.|+.+.|.++..+ .++...|..|....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~-------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKE-------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCC-------CSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHh-------cCcHHHHHHHHHHH
Confidence 4555555555666666655543211 112334455565555553322 12444566666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
...|+++-|++.|.+... +..|+-.|...|+.+...++.+.....+. ++....++...|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 666666666666555432 33444455555555555555555443331 333344444455555555
Q ss_pred HHHH
Q 010853 429 HFLY 432 (499)
Q Consensus 429 ~~~~ 432 (499)
+++.
T Consensus 423 ~lL~ 426 (443)
T PF04053_consen 423 DLLI 426 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.63 Score=38.46 Aligned_cols=87 Identities=10% Similarity=0.083 Sum_probs=41.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHH
Q 010853 53 TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 132 (499)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 132 (499)
.|.....+|-...++++|...+.+..+-.... ...|. ....++.|.-+.+++.+.. --+..++..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnn------rslfh-------AAKayEqaamLake~~kls--Evvdl~eKA 97 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENN------RSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKA 97 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc------ccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHH
Confidence 34455566666777777776555554322211 11111 1122344444444443321 112334445
Q ss_pred HHHHHhcCChhhHHHHHHHHHh
Q 010853 133 IDSLCRSGRNHGASRVVYVMRK 154 (499)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~ 154 (499)
...|..+|..+.|-..+++.-+
T Consensus 98 s~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHH
Confidence 5666677776666666655443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.76 Score=39.32 Aligned_cols=49 Identities=18% Similarity=0.066 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 349 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 349 (499)
|...-..+...+...|+.++|.+.+-.+++...-.-|...-..++..+.
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 4444444555555555555555555554443322233333334444333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.11 Score=48.36 Aligned_cols=130 Identities=15% Similarity=0.072 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 010853 128 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 207 (499)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (499)
..+.++..+.+.|..+.|+++-.+-.. -.....+.|+++.|.++.++. .+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 345556666666666666654432221 234445566666666553321 24456666666666
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 010853 208 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 287 (499)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 287 (499)
..|+++.|++.|.+... +..++-.|.-.|+.+...++.......|- ++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 66666666666655431 34444444455555544444444443321 2333334444455555555
Q ss_pred HHH
Q 010853 288 VLN 290 (499)
Q Consensus 288 ~~~ 290 (499)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.069 Score=44.88 Aligned_cols=87 Identities=16% Similarity=0.071 Sum_probs=40.5
Q ss_pred cCCCHhHHHHHHHhccCCCCC--CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCC-hhhHHHHHHHHHccCChh
Q 010853 103 REGYVNEVFRIAEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL-TPS-LVSYNSIVHGLCKHGGCM 178 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~-~p~-~~~~~~l~~~~~~~~~~~ 178 (499)
+.|++..|...|....+..+. -...++--|..++...|+++.|..+|..+.+.-. .|. +..+--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 334455555555554443321 0112233345555555555555555555544311 111 234444555555555555
Q ss_pred HHHHHHHHHHh
Q 010853 179 RAYQLLEEGIQ 189 (499)
Q Consensus 179 ~a~~~~~~~~~ 189 (499)
+|...|+++.+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.36 Score=44.19 Aligned_cols=149 Identities=12% Similarity=0.023 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHhccCCCCCch-hhHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc
Q 010853 317 RIQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLFR---------LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 386 (499)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (499)
..+.|+.+|.+........|+- ..|..+..++.. ..+..+|.+.-+...+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3557788888877555556653 344444333322 123456677777777776 66788888887777888
Q ss_pred CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHH
Q 010853 387 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV-CYNVVIDGACKLSMKREAYQI 465 (499)
Q Consensus 387 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~ 465 (499)
++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+..+.--.. .....+..|+. ...++|+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 8899999999988765443 34455556666667889999999998877653221111 22222335554 445667777
Q ss_pred HHH
Q 010853 466 LRE 468 (499)
Q Consensus 466 ~~~ 468 (499)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 644
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.18 Score=44.89 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 402 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 402 (499)
+++.+.-++.+.+++..|+...++.+..+ +.|....-.=..+|...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34445555556666666666666665554 445555555555566666666666666666543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.18 Score=38.08 Aligned_cols=56 Identities=13% Similarity=0.026 Sum_probs=27.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLP--NSLTYSVLVRGVLRTRDVERANVLMFKLWERMK 82 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (499)
.+.|+++.|.+.|+.+..+-... ...+.-.++.++.+.+++++|...++++++..|
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 55566666666666655542111 122333355555555555555555555554443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.34 Score=42.42 Aligned_cols=231 Identities=10% Similarity=-0.030 Sum_probs=128.9
Q ss_pred HHhcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHc
Q 010853 26 LAITGEMDVAYKVFDEMRHCG--VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 103 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (499)
+..+.+.++|+..+......- ...--.+|-.+..+..++|.++++.......++-..+-.+...--..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888887776531 001224566777888899988888765433333332222223333455666666666
Q ss_pred CCCHhHHHHHHHhccCC-CCCC---chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-----CChhhHHHHHHHHHcc
Q 010853 104 EGYVNEVFRIAEDMPQG-KSVN---EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT-----PSLVSYNSIVHGLCKH 174 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~-----p~~~~~~~l~~~~~~~ 174 (499)
.-++.+++.+-..-... |..| .-.....+..+....+.++++++.|+...+.... ....+|..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66677776665553322 1111 1133344666777777888888888876653211 1234677888888888
Q ss_pred CChhHHHHHHHHHHh----CCCCCCcccH-----HHHHHHHhcCCCHHHHHHHHHHHHh----CCCCC-chhhHHHHHHH
Q 010853 175 GGCMRAYQLLEEGIQ----FGYLPSEHTY-----KVLVEGLCGESDLEKARKVLQFMLS----KKDVD-RTRICNIYLRA 240 (499)
Q Consensus 175 ~~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~ 240 (499)
.|+++|.-+..+..+ .++..-..-| ..|.-++...|.+..|.+..++..+ .|..+ .......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888887766554432 1221111112 2233455566777667666665432 22222 12244445555
Q ss_pred HhccCChHHHHHHHHH
Q 010853 241 LCLIKNPTELLNVLVF 256 (499)
Q Consensus 241 ~~~~~~~~~a~~~~~~ 256 (499)
|...|+.+.|+.-|+.
T Consensus 256 yR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHhcccHhHHHHHHHH
Confidence 6666666666555543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.1 Score=39.21 Aligned_cols=61 Identities=13% Similarity=0.007 Sum_probs=33.1
Q ss_pred hHHHHHHHHHccCChh---HHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010853 163 SYNSIVHGLCKHGGCM---RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 163 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
++..++.+|...+..+ +|.++++.+.... .-...++..-++.+.+.++.+.+.+++.+|..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 4455566666655443 3444555553322 11234444555666666777777777777764
|
It is also involved in sporulation []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.23 Score=42.50 Aligned_cols=76 Identities=13% Similarity=0.275 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHhHHHHHH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK-----NGLNPDAVTWRILD 485 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l~ 485 (499)
+..++..+...|+++.+.+.++++....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 444445555555555555555555544322 444555555555555555555555544432 45555555555444
Q ss_pred HH
Q 010853 486 KL 487 (499)
Q Consensus 486 ~~ 487 (499)
+.
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.47 Score=41.14 Aligned_cols=154 Identities=14% Similarity=0.050 Sum_probs=101.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHH----HHHHHHhcC
Q 010853 277 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA----VLRGLFRLR 352 (499)
Q Consensus 277 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~ 352 (499)
.-.|+..+|-..++++.+.. +.|...+...-.+|...|+...-...+++++..- .+|...|.. ..-++...|
T Consensus 114 ~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhc
Confidence 34677777777888888765 6778888888888888888888888888876553 344333322 222344678
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP---SNIHDNYVYAAMIKGLCRSGKIHEAVH 429 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~ 429 (499)
-+++|++.-++..+.+ +.|.-.-..+...+.-.|+..++.++..+-... +.-.-...|-...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 8888888888888765 556666667777777788888888877654311 000111123333345556678888888
Q ss_pred HHHHHH
Q 010853 430 FLYELV 435 (499)
Q Consensus 430 ~~~~~~ 435 (499)
+|+.=+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 886543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.8 Score=39.34 Aligned_cols=116 Identities=11% Similarity=0.139 Sum_probs=83.1
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC-YNVVID 451 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 451 (499)
.+|..++++-.+..-++.|+.+|-++.+.+ ..+++.++++++..++. |+..-|..+|+--... -||... -+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 356667777778888999999999999888 67888899999988775 6788899999876554 344443 355666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHhcccCC
Q 010853 452 GACKLSMKREAYQILREMRKNGLNPD--AVTWRILDKLHGNRGN 493 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~ 493 (499)
-+...++-+.|..+|+..... +..+ ...|..++..=..-|+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~ 517 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGS 517 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcc
Confidence 778888888888888865432 2223 4566666654444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.63 Score=35.19 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=35.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCC--CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGV--VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
.+.|++++|.+.|+.+...-. +-....--.|+.+|.+.++++.|...+++.++..+.....-|-..+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 355666666666666655410 11223344455556666666666666666655544433333444444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.49 E-value=3 Score=41.44 Aligned_cols=187 Identities=13% Similarity=0.130 Sum_probs=94.1
Q ss_pred HHHHHHHHHH-hCCCCC--ChhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHhhhccCCc-cCHHhHHHHHHHHHcCCCHh
Q 010853 34 VAYKVFDEMR-HCGVLP--NSLTYSVLVRGVL-RTRDVERANVLMFKLWERMKEEEDLS-VNNAAFANLVDSLCREGYVN 108 (499)
Q Consensus 34 ~a~~~~~~~~-~~~~~~--~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 108 (499)
-|++.++-+. ....+| +..++-.+...+. ...+++.|+..+.+.+...... +.. ..-..-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH-RLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHhcCHHH
Confidence 4566666666 333333 2344455666665 5677888888777665544331 211 11222334455555555544
Q ss_pred HHHHHHHhccCC----CCCCchhhHHHH-HHHHHhcCChhhHHHHHHHHHhcC---CCCChhhHHHHHHHHH--ccCChh
Q 010853 109 EVFRIAEDMPQG----KSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRG---LTPSLVSYNSIVHGLC--KHGGCM 178 (499)
Q Consensus 109 ~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~g---~~p~~~~~~~l~~~~~--~~~~~~ 178 (499)
|...++...+. +..+....|..+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. ..+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 76666653322 222333344433 333333468888888887766542 2233334444444443 345455
Q ss_pred HHHHHHHHHHhCC---------CCCCcccHHHHHHHH--hcCCCHHHHHHHHHHH
Q 010853 179 RAYQLLEEGIQFG---------YLPSEHTYKVLVEGL--CGESDLEKARKVLQFM 222 (499)
Q Consensus 179 ~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 222 (499)
.+.+.++.+.... ..|...+|..+++.+ ...|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666553211 122334555555544 3566666666555544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.42 E-value=3.1 Score=41.16 Aligned_cols=179 Identities=13% Similarity=0.057 Sum_probs=112.3
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC--HHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHH
Q 010853 53 TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN--NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 130 (499)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (499)
....-+..+.+..-++-|..+... .+..++ ...+..-.+-+.+.|++++|...|-+-... ..|+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~--------~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s----- 401 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS--------QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS----- 401 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----
Confidence 445566777777777777664321 122222 123333445556789999998766554321 1122
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (499)
.+|.-|....+..+--.+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+..- .|.. ..-....+..+.+.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 2566667777778888889999999887 77777889999999999998777766543 2221 123455667777777
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHH
Q 010853 211 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 257 (499)
Q Consensus 211 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (499)
-.+.|..+-..... ....... .+-..+++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 77777666554432 1222222 334467888888887655
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=2.1 Score=39.43 Aligned_cols=150 Identities=10% Similarity=-0.002 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCC-HHHHHHHHHHHHcc---------CCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh
Q 010853 281 RIEEALKVLNDMVAGKFCAPD-AVTFTTIIFGLLNV---------GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 350 (499)
Q Consensus 281 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 350 (499)
..+.|+.+|.+........|+ ...|..+..++... ....+|.++-.+..+.. +.|......+..+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 467888899998843322443 66777777665432 23446666666655544 3456666666666677
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 010853 351 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVH 429 (499)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~ 429 (499)
.++++.|..+|+.....+ +....+|......+.-.|+.++|.+.+++..+.++.. -..+....++.|+.. ..+.|++
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 788999999999999875 3345566666667778999999999999976654422 222333344466654 4678888
Q ss_pred HHHHH
Q 010853 430 FLYEL 434 (499)
Q Consensus 430 ~~~~~ 434 (499)
++-+-
T Consensus 429 ~~~~~ 433 (458)
T PRK11906 429 LYYKE 433 (458)
T ss_pred HHhhc
Confidence 77543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.4 Score=37.05 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=27.4
Q ss_pred HcCCCHhHHHHHHHhccCCCCC--CchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 102 CREGYVNEVFRIAEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
.+.|++++|.+.|+.+....+. -...+.-.++-++.+.++++.|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455566666666555544321 11233333444555566666666666655554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.83 Score=39.69 Aligned_cols=154 Identities=14% Similarity=0.040 Sum_probs=110.5
Q ss_pred hccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHH----HHHHHHHHccCC
Q 010853 242 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF----TTIIFGLLNVGR 317 (499)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~ 317 (499)
...|+..+|-..++++++.- +.|...++..=.+|.-.|+.+.....++++...- .+|...| .....++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence 45677888888888888775 4488888888899999999999999999988653 3444333 344556678999
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCcCHHhHHHHHHHHHhcCChhhHHH
Q 010853 318 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI---GVVADSTTYAIVIDGLCESNQLDEAKR 394 (499)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~ 394 (499)
+++|.+.-++.++-+ +-|.-.-.+....+-..+++.++.++..+-... +--.-..-|....-.+...+.++.|.+
T Consensus 191 y~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999888866554 345555666777777889999999887655432 111112234445556677899999999
Q ss_pred HHHHHh
Q 010853 395 FWDDIV 400 (499)
Q Consensus 395 ~~~~~~ 400 (499)
+|+.-+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998655
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.22 Score=41.96 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=74.1
Q ss_pred CCchhhHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH
Q 010853 335 SPGIVTYNAVLRGLFR-----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 409 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 409 (499)
.-|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+.. +.|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-H
Confidence 4566778888877754 3567777778889999999999999999998775432 2222 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 459 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (499)
++....--|-++ -+-+++++++|..+|+.||..+-..|+.++.+.+-.
T Consensus 127 vfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 222222223222 346788888888888888888888888888776654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.09 E-value=3.1 Score=39.42 Aligned_cols=92 Identities=12% Similarity=0.017 Sum_probs=46.6
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHH-hcCChhhHHHHHHHHHhc-CCC-CChhhHHHHHHHHHc
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC-RSGRNHGASRVVYVMRKR-GLT-PSLVSYNSIVHGLCK 173 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~-g~~-p~~~~~~~l~~~~~~ 173 (499)
....-.+.|..+.+.++|++-...- +-+...|......+. ..|+.+...+.|+..... |.. -+...|...|..-..
T Consensus 85 fA~~E~klg~~~~s~~Vfergv~ai-p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~ 163 (577)
T KOG1258|consen 85 FADYEYKLGNAENSVKVFERGVQAI-PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG 163 (577)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc
Confidence 3344445566666666666655422 233444444433322 235555555555555443 211 123345555555555
Q ss_pred cCChhHHHHHHHHHHh
Q 010853 174 HGGCMRAYQLLEEGIQ 189 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~ 189 (499)
++++.....+|+..++
T Consensus 164 qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 164 QKSWKRVANIYERILE 179 (577)
T ss_pred cccHHHHHHHHHHHHh
Confidence 6666666666666655
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.2 Score=34.20 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 010853 201 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 280 (499)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (499)
.++..+...+.......+++.+...+ ..+....+.++..|++.+ .++..+.+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444455555555555554433 233444455555554332 2222222221 012223334455555555
Q ss_pred CHHHHHHHHHHH
Q 010853 281 RIEEALKVLNDM 292 (499)
Q Consensus 281 ~~~~a~~~~~~~ 292 (499)
.++++.-++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.2 Score=34.15 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 349 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 349 (499)
..++..+...+.......+++.+...+ ..+....+.++..|++.. ..+.++.+.. ..+......+++.|.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 455666666667777777777766654 345566667777776543 2334444432 122334445666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc-CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
+.+.++++..++.++.. +...+..+... ++++.|.+++.+. .+...|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 66777777777666532 11222223333 6666666666542 14445666655544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.98 E-value=2.3 Score=37.37 Aligned_cols=128 Identities=11% Similarity=0.030 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHc--cC----ChhHHHHHHHHHHhCCC---CCCcccHHHHHHHHhcCCC---
Q 010853 144 GASRVVYVMRKRGLTPSLVSYNSIVHGLCK--HG----GCMRAYQLLEEGIQFGY---LPSEHTYKVLVEGLCGESD--- 211 (499)
Q Consensus 144 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~--- 211 (499)
+...+++.|.+.|..-+..+|-+..-.... .. ....|..+|+.|++... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344455555555555444444332222111 11 13345566666655432 1222333333322 2222
Q ss_pred -HHHHHHHHHHHHhCCCCCchh--hHHHHHHHHhccCC--hHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 010853 212 -LEKARKVLQFMLSKKDVDRTR--ICNIYLRALCLIKN--PTELLNVLVFMLQTQCQPDVITLNTVI 273 (499)
Q Consensus 212 -~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 273 (499)
.+.++.+|+.+...|...... ....++........ ..++.++++.+.+.|+++....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 234455555555544443322 22222222222222 235666777777777776666665443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.12 Score=30.07 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
..+..+|...|++++|.++|+++++.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.98 Score=39.74 Aligned_cols=229 Identities=12% Similarity=0.027 Sum_probs=111.3
Q ss_pred hcCCCHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc--CCC---CCHhhHHHHHHHHHhc
Q 010853 207 CGESDLEKARKVLQFMLSKK--DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT--QCQ---PDVITLNTVINGFCKM 279 (499)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~ 279 (499)
....+.++++..+.+.+.+- ....-.++..+..+.++.|.+++++..--.-.+. ... .-...|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776665431 1112234555566666666666655432111110 000 0122333344444444
Q ss_pred CCHHHHHHHHHHHhhCCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc----hhhHHHHHHHHHhcC
Q 010853 280 GRIEEALKVLNDMVAGKFCAPD---AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----IVTYNAVLRGLFRLR 352 (499)
Q Consensus 280 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~ 352 (499)
-++.+++.+-..-....+..|. .....++..++...+.++++++.|+..++-..-..| ...+..+-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444554444443333222221 122334555666666677777777766644332222 235666666677777
Q ss_pred CHHHHHHHHHHHhh----CCCCcCHH-----hHHHHHHHHHhcCChhhHHHHHHHHhc----CCCCC-CHHHHHHHHHHH
Q 010853 353 RVEEAKEVFNCMLG----IGVVADST-----TYAIVIDGLCESNQLDEAKRFWDDIVW----PSNIH-DNYVYAAMIKGL 418 (499)
Q Consensus 353 ~~~~a~~~~~~~~~----~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~ 418 (499)
|+++|.-+..+..+ .++..=.. +...+.-++...|....|.+..++..+ .|..+ -......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 77777666554432 22111111 122333455566666666666665532 22221 112334555666
Q ss_pred HhcCCHHHHHHHHHHHH
Q 010853 419 CRSGKIHEAVHFLYELV 435 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~ 435 (499)
...|+.+.|+.-+++..
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 66777777666666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.42 Score=41.02 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=54.6
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD-----SGVTPNIVCYNV 448 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 448 (499)
.++..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|++.|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34556667777777777777777777765544 666777777777777777777777777654 577777776666
Q ss_pred HHHH
Q 010853 449 VIDG 452 (499)
Q Consensus 449 l~~~ 452 (499)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.8 Score=40.07 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=44.0
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 373 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
..+-..+..++.+.|+.++|.+.++++.+..+.. +..+...|+.++...+.+.++..++.+--+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3344556667777888888888888886543322 333667788888888888888888877543
|
The molecular function of this protein is uncertain. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.78 E-value=3.7 Score=41.01 Aligned_cols=197 Identities=15% Similarity=0.092 Sum_probs=101.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChh-------hHHHHHH-HHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSL-------TYSVLVR-GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
..+.++.+|..++.++...-..|+.. .++.+-. .....|+++.+..+.+..+.+.++. ...+....+..+.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~-~~~~r~~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA-AYRSRIVALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc-cchhhhhhhhhhh
Confidence 67788888888888876543222221 2333222 2345778888888888888777765 5566667777777
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCCCCch---hhHHHHH--HHHHhcCCh--hhHHHHHHHHHhcCC--C----CChhhHH
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKSVNEE---FACGHMI--DSLCRSGRN--HGASRVVYVMRKRGL--T----PSLVSYN 165 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~--~~~~~~~~~--~~A~~~~~~~~~~g~--~----p~~~~~~ 165 (499)
.+..-.|++++|..+.....+....-+. ..|..+. ..+...|+. .+....|........ + +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7888888888888776665443221222 2222222 234455632 222333333322210 1 1122334
Q ss_pred HHHHHHHcc-CChhHHHHHHHHHHhCCCCCCcccH--HHHHHHHhcCCCHHHHHHHHHHHHh
Q 010853 166 SIVHGLCKH-GGCMRAYQLLEEGIQFGYLPSEHTY--KVLVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 166 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
.++.++.+. +...++..-+.-.......|-...+ ..|+......|+++.|...++++..
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444444441 1111122222221111111111122 2566667777888888777777654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=2.3 Score=35.73 Aligned_cols=187 Identities=14% Similarity=0.104 Sum_probs=104.8
Q ss_pred CCCCChhhHHHHH--HhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCcc
Q 010853 14 SPFPPVASLTSAL--AITGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV 89 (499)
Q Consensus 14 ~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (499)
...|...-+...+ .+.|++++|.+-|+.+..+.. +-...+.-.++-++-+.++++.|....++.+...|.+ |
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~----~ 105 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH----P 105 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC----C
Confidence 3446666677777 899999999999999987641 1133445556678888999999999888887776654 3
Q ss_pred CHHhHHHHHHHHHcC-------CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh
Q 010853 90 NNAAFANLVDSLCRE-------GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 162 (499)
Q Consensus 90 ~~~~~~~l~~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~ 162 (499)
| ..|..-|.+++.- .|...+.+.|..+. .++.-|=...-...|......+... ..
T Consensus 106 n-~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~-----LA 167 (254)
T COG4105 106 N-ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDA-----LA 167 (254)
T ss_pred C-hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHH-----HH
Confidence 3 2233334443321 12222222222211 1111111111112222222222211 00
Q ss_pred hH-HHHHHHHHccCChhHHHHHHHHHHhCCCCCCc---ccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 163 SY-NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE---HTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 163 ~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
-+ ..+.+.|.+.|.+..|..-+++|++. .+-+. ..+-.+..+|...|-.++|.+.-+-+.
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 01 23556777888888888888888775 32222 345556677888888888877766554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.64 E-value=2.8 Score=36.70 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=31.7
Q ss_pred cHHHHHHHHhcCCCHH---HHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc
Q 010853 198 TYKVLVEGLCGESDLE---KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 260 (499)
Q Consensus 198 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (499)
++..++.++...+..+ +|.++++.+. ...+..+.++..-+..+.+.++.+.+.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~-~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLE-SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3445556666555443 3444444443 222223344445555555566666666666666654
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.12 Score=30.01 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
++..+..+|...|++++|+++++++++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 344555666666666666666666655443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.60 E-value=4.3 Score=38.64 Aligned_cols=164 Identities=16% Similarity=0.107 Sum_probs=102.8
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcC-CCCC-----HhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCH
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPD-----VITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDA 302 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 302 (499)
.+..++....-.||-+..++.+.+..+.+ +.-. .-.|..++..++. ....+.|.+++..+.+. -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 34555666666677777777776655432 2111 1123333333332 45678899999999876 3665
Q ss_pred HHHHH-HHHHHHccCCHHHHHHHHHHHhccCCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHH
Q 010853 303 VTFTT-IIFGLLNVGRIQEALNLLYQVMPQRGYSP--GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 379 (499)
Q Consensus 303 ~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 379 (499)
..|.. -...+...|+.++|++.|++.......-+ ....+--+.-++....++++|...|..+.+.. ..+..+|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 55543 34566778999999999987653221111 22334455556777899999999999998865 4566666665
Q ss_pred HHH-HHhcCCh-------hhHHHHHHHHh
Q 010853 380 IDG-LCESNQL-------DEAKRFWDDIV 400 (499)
Q Consensus 380 ~~~-~~~~g~~-------~~a~~~~~~~~ 400 (499)
..+ +...|+. ++|..++.++.
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 544 3456766 77888887763
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.9 Score=33.46 Aligned_cols=45 Identities=20% Similarity=0.187 Sum_probs=19.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 72 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 72 (499)
+..|+++.|++.|.+.+..- +.++..||.-.+++--+|+.++|..
T Consensus 54 aE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALd 98 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALD 98 (175)
T ss_pred HhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHH
Confidence 34444444444444444321 2244444444444444444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.9 Score=33.36 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=25.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhH-HHHHHHHHhcCChhhHHHHHHHHhc
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTY-AIVIDGLCESNQLDEAKRFWDDIVW 401 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (499)
.+.++.+.+..++..+.-. .|..... ..-...+...|++.+|.++|+++..
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3455666666666655543 2322221 1222334555666666666666543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.9 Score=37.01 Aligned_cols=62 Identities=5% Similarity=-0.057 Sum_probs=30.0
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010853 124 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 185 (499)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 185 (499)
++..+...++..++..+++.+-.+.++..... +..-|...|..+|+.-...|+..-...+..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 33334444555555555555555555444433 333345555555555555555444444433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.12 E-value=5 Score=37.39 Aligned_cols=79 Identities=6% Similarity=0.044 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 010853 231 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 309 (499)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (499)
..+-..+..++.+.|+.++|.+.++++.+.... -.......|+.++...+.+.++..++.+..+....+.-..+|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 334445666667788888888888888765332 2334566778888888888888888887755432122344555544
|
The molecular function of this protein is uncertain. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.1 Score=36.02 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=33.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNS--LTYSVLVRGVLRTRDVERANVLMFKLWE 79 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (499)
....+.+.|+.+.|++.|.++......+.. ..+-.+|+.....+++..+.....++-.
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344446666666666666666665443432 3344566666666666666655544433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.5 Score=32.42 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=58.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch--hhHHHHHHHHHhcC
Q 010853 275 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI--VTYNAVLRGLFRLR 352 (499)
Q Consensus 275 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~ 352 (499)
+....|+.+.|++.|.+....- +.....||.-.+++.-.|+.++|++-+++.++-.|-+... ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4566777777777777766542 4566777777777777777777777777766555433211 12222233355567
Q ss_pred CHHHHHHHHHHHhhCC
Q 010853 353 RVEEAKEVFNCMLGIG 368 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~ 368 (499)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777666655
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.46 E-value=7.2 Score=38.16 Aligned_cols=82 Identities=11% Similarity=0.091 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh-cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH----hcCCHHHH
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC----RSGKIHEA 427 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a 427 (499)
+.+.|..++...-+.| .|+....-..+..... ..+...|.++|......|..+ . +-.+..+|. ...+...|
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A--~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-A--IYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-H--HHHHHHHHHhCCCcCCCHHHH
Confidence 4455666666666655 3333333222222222 234556666666665555331 1 111111111 12255666
Q ss_pred HHHHHHHHHcC
Q 010853 428 VHFLYELVDSG 438 (499)
Q Consensus 428 ~~~~~~~~~~~ 438 (499)
..++.+..+.|
T Consensus 384 ~~~~k~aA~~g 394 (552)
T KOG1550|consen 384 FAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHcc
Confidence 66666666655
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.27 E-value=4.3 Score=33.88 Aligned_cols=205 Identities=15% Similarity=0.115 Sum_probs=95.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 010853 199 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 278 (499)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (499)
|.....+|....++++|...+.+..+ +...+...|. ..+.++.|.-+.+++.+.. --...|+.-...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 44445566666777777776665542 1111111111 1223344444444443321 123345555666667
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC----CCCCchhhHHHHHHHHHhcCCH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR----GYSPGIVTYNAVLRGLFRLRRV 354 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~ 354 (499)
+|.++.|-..+++.-+. ...-++++|+++|.+..... ....-...+...-+.+.+...+
T Consensus 104 ~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred hCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 77666666555544321 12233344444443322111 0011122233444455566666
Q ss_pred HHHHHHHHHHhhC----CCCcC-HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC---CCCHHHHHHHHHHHHhcCCHHH
Q 010853 355 EEAKEVFNCMLGI----GVVAD-STTYAIVIDGLCESNQLDEAKRFWDDIVWPSN---IHDNYVYAAMIKGLCRSGKIHE 426 (499)
Q Consensus 355 ~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 426 (499)
++|-..+.+-... .--++ -..|-..|-.+....++..|+..++...+.+- .-+..+...|+.+|- .|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHH
Confidence 6655544432211 00111 12344445556666788888888877432221 224556677777664 466666
Q ss_pred HHHHH
Q 010853 427 AVHFL 431 (499)
Q Consensus 427 a~~~~ 431 (499)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 65544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.27 Score=27.05 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYE 433 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~ 433 (499)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.14 E-value=3.5 Score=32.48 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=74.1
Q ss_pred hccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCH
Q 010853 329 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 408 (499)
Q Consensus 329 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 408 (499)
+...+++|+...+..++..+.+.|.+..... +...++-+|.......+-.+. +.+..+.++--+|.++= .
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL-~--- 89 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL-G--- 89 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh-h---
Confidence 4567788888888888888888887555443 444445555554443332222 22233333333332210 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 409 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 409 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..+..+++.+...|++-+|.++.++.... +...-..++.+..+.++...-..+++-..+
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13566777888888888888888765322 222334566666667776655555555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.6 Score=35.06 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChh----h
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDS---GVTPNIV----C 445 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~----~ 445 (499)
.+..+...|.+.|+.+.|.+.+.++.+....+.. ..+-.+|+.....+++..+...+.+.... |-.++.. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666666666666666666666544333222 24455666666666666666665555432 1111111 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 446 YNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 446 ~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
|..+ ++...+++.+|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2345677777777765553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.12 E-value=11 Score=38.02 Aligned_cols=227 Identities=14% Similarity=0.020 Sum_probs=118.8
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCcc-------cHHHHH-HHHhcCCCHHHHHHHHHHHHhC----CCCCchhhHHHHHH
Q 010853 172 CKHGGCMRAYQLLEEGIQFGYLPSEH-------TYKVLV-EGLCGESDLEKARKVLQFMLSK----KDVDRTRICNIYLR 239 (499)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 239 (499)
....++.+|..++.+....-..|+.. .++.+- ......|+++.+.++.+..... ...+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34678888888888765432233222 122221 2234578889988888877642 22233446667777
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHH-----HHHHhcCC--HHHHHHHHHHHhhCCC-----CCCCHHHHHH
Q 010853 240 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI-----NGFCKMGR--IEEALKVLNDMVAGKF-----CAPDAVTFTT 307 (499)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~-----~~~~~~~~~~ 307 (499)
+..-.|++++|..+..+..+..-.-+...+..+. ..+...|+ ....+..|........ ..+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7888899999998887766543333444333222 23455663 2333333443332211 1122344555
Q ss_pred HHHHHHccCC-HHHHHHHHHHHhccCCCCCchhhH--HHHHHHHHhcCCHHHHHHHHHHHhhCCCCc----CHHhHHHHH
Q 010853 308 IIFGLLNVGR-IQEALNLLYQVMPQRGYSPGIVTY--NAVLRGLFRLRRVEEAKEVFNCMLGIGVVA----DSTTYAIVI 380 (499)
Q Consensus 308 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 380 (499)
++.++.+... ..++..-+.- .......|-...+ ..++......|+.++|...+.++......+ +..+....+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~-~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEV-GSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchh-hhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 5555555211 1112111111 1111112222222 256777888999999999988887543222 222222333
Q ss_pred H--HHHhcCChhhHHHHHHHH
Q 010853 381 D--GLCESNQLDEAKRFWDDI 399 (499)
Q Consensus 381 ~--~~~~~g~~~~a~~~~~~~ 399 (499)
. .....|+.+.+.....+-
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hHHHhcccCCHHHHHHHHHhc
Confidence 2 234577877777766653
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.98 Score=31.21 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 427 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+.+-++.+...++-|++....+.++||.+.+++..|.++++-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444445555555555555555555555555555443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.31 Score=26.76 Aligned_cols=26 Identities=8% Similarity=-0.139 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 445 CYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999964
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.71 E-value=2.5 Score=29.69 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=18.4
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 429 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+-++.+...++-|++....+.+++|.+.+++..|.++++-.+
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555554443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.60 E-value=5.5 Score=33.44 Aligned_cols=203 Identities=18% Similarity=0.137 Sum_probs=106.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 345 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 345 (499)
...+......+...+.+..+...+...............+......+...+.+..+...+.......... ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP--DLAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc--chHHHHHH
Confidence 3444555555666666666666666554310013344455555555556666666666665543221111 11111222
Q ss_pred H-HHHhcCCHHHHHHHHHHHhhCCC--CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 346 R-GLFRLRRVEEAKEVFNCMLGIGV--VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 346 ~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
. .+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 2 46666777777777776644211 01223333333345566677777777776654332213455666666666777
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 423 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+++.+...+......... ....+..+...+...+..+.+...+.+...
T Consensus 217 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777776654222 123333344444455666777776666654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.33 E-value=9.7 Score=35.63 Aligned_cols=180 Identities=11% Similarity=0.029 Sum_probs=98.8
Q ss_pred CCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 010853 194 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 273 (499)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 273 (499)
.|......++..+.....+.-++.+..+++.- ..+...+..++++|... ..++-..+|+++.+..+. |...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 35556666777777777777777777776643 23444566666666666 556666666666665443 333333344
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 010853 274 NGFCKMGRIEEALKVLNDMVAGKFCAP----DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 349 (499)
Q Consensus 274 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 349 (499)
..|-+ ++...+...|.++..+-.... -...|..+.... ..+.+..+.+..+.-...|...-...+..+-..|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 43333 666666666666654322100 112333333211 34455555655555444454445555556656666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHH
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 381 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 381 (499)
...++++|++++..+.+.. .-|...-..++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 7777777777777776654 234443333433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.30 E-value=8.8 Score=35.04 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=32.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhh
Q 010853 24 SALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE 83 (499)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (499)
....+.|+++...+........ .++...+.++... ..++++++.....+....+..
T Consensus 6 eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~ 61 (352)
T PF02259_consen 6 EAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLD 61 (352)
T ss_pred HHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHH
Confidence 3446778888744444444332 1344444444333 788888887776666655443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.26 E-value=6.4 Score=33.34 Aligned_cols=173 Identities=10% Similarity=0.061 Sum_probs=107.0
Q ss_pred CCCCChhhHHHHH----HhcCChHHHHHHHHHHHhCCCCCChh---hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccC
Q 010853 14 SPFPPVASLTSAL----AITGEMDVAYKVFDEMRHCGVLPNSL---TYSVLVRGVLRTRDVERANVLMFKLWERMKEEED 86 (499)
Q Consensus 14 ~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (499)
.+.|++-.-++-| .+..++++|+.-|++..+........ ++-.++....+.+++++-...|.+++.-+...-.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4467776667766 67789999999999998864333333 3445778899999999999988888877665433
Q ss_pred CccCHHhHHHHHHHHHcCCCHhHHHHHHH-------hccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc----
Q 010853 87 LSVNNAAFANLVDSLCREGYVNEVFRIAE-------DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR---- 155 (499)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 155 (499)
...+..+-|++++......+.+-..+.++ +.+... ....+-+.|...|...+++.+..+++.++...
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeR--LWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNER--LWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcce--eeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 33445566777776665555444333333 332221 11223345666677777777777777766543
Q ss_pred -CC------CCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 010853 156 -GL------TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 188 (499)
Q Consensus 156 -g~------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 188 (499)
|- ..=...|..=|..|....+-.....+|++..
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 10 0113345555666666666666666666554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.8 Score=35.02 Aligned_cols=42 Identities=2% Similarity=-0.133 Sum_probs=20.0
Q ss_pred CCCHhHHHHHHHhccC---CCCCCchhhHHHHHHHHHhcCChhhH
Q 010853 104 EGYVNEVFRIAEDMPQ---GKSVNEEFACGHMIDSLCRSGRNHGA 145 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A 145 (499)
..+.++++.++-+..+ .+-.+|+..+.+|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4445555544444321 12234555555555555555555554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.2 Score=27.14 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 010853 407 DNYVYAAMIKGLCRSGKIHEA 427 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a 427 (499)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 333444444444444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.87 E-value=5.2 Score=31.51 Aligned_cols=36 Identities=8% Similarity=0.206 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 010853 37 KVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 72 (499)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 72 (499)
+.++.+.+.+++|++..+..+++.+.+.|++..-..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 444445555666666666666666666666554443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.86 E-value=5.2 Score=31.42 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=9.3
Q ss_pred ccCChHHHHHHHHHHHhcC
Q 010853 243 LIKNPTELLNVLVFMLQTQ 261 (499)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~ 261 (499)
+.+..++|+.-|..+.+.|
T Consensus 70 ~~~k~d~Alaaf~~lektg 88 (221)
T COG4649 70 QENKTDDALAAFTDLEKTG 88 (221)
T ss_pred HcCCchHHHHHHHHHHhcC
Confidence 3444455555555555444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.84 E-value=2.3 Score=40.23 Aligned_cols=150 Identities=15% Similarity=0.070 Sum_probs=85.1
Q ss_pred cCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHH
Q 010853 103 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 182 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 182 (499)
-.|+++.|..++..+.+ ...+.+.+.+.+.|..++|+++- +|+.. -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence 34666666555544442 23344566666677666665432 22221 1233446677777777
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCC
Q 010853 183 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 262 (499)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 262 (499)
+..+. .+..-|..|.++....+++..|.+.|..... |..++..+...|+.+....+-....+.|.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 66543 2445677788888888888888887776542 44455555566666555555555554443
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 263 QPDVITLNTVINGFCKMGRIEEALKVLNDM 292 (499)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 292 (499)
. |.-..+|...|+++++.+++..-
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHhc
Confidence 2 22233455567777776666543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.82 E-value=15 Score=36.59 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHc--
Q 010853 237 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN-- 314 (499)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 314 (499)
+...+.-.|.++.|.+++-. ..+...+...+...+..|.-.+-.+... ..+.......|...-+..|+..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34555566777777777765 1222334555444444332222111111 2121111001222556777777764
Q ss_pred -cCCHHHHHHHHHH
Q 010853 315 -VGRIQEALNLLYQ 327 (499)
Q Consensus 315 -~~~~~~a~~~~~~ 327 (499)
..+..+|.+.+.-
T Consensus 339 ~~td~~~Al~Y~~l 352 (613)
T PF04097_consen 339 EITDPREALQYLYL 352 (613)
T ss_dssp TTT-HHHHHHHHHG
T ss_pred hccCHHHHHHHHHH
Confidence 5677788887765
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.72 E-value=6.1 Score=32.03 Aligned_cols=72 Identities=13% Similarity=-0.003 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC---CCCCCcccHHHHHHHHhcCCCHHHH
Q 010853 143 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF---GYLPSEHTYKVLVEGLCGESDLEKA 215 (499)
Q Consensus 143 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 215 (499)
+.|.+.|-.+...+.--++.....|...|. ..+.+++.+++....+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455666666665554434444444444443 45566666666655432 2245566666666666666666655
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.48 Score=25.44 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.30 E-value=6 Score=31.08 Aligned_cols=51 Identities=12% Similarity=-0.001 Sum_probs=23.6
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCcc-cHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 173 KHGGCMRAYQLLEEGIQFGYLPSEH-TYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
..+..++|+.-|.++.+.|...-+. ....+.......|+...|...|+++-
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 4455566666666665554321110 11112223345555555555555554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.29 Score=26.47 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=25.1
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 010853 431 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 463 (499)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 463 (499)
|++.++..+. |...|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4556666533 7889999999999999999886
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.00 E-value=3.4 Score=35.76 Aligned_cols=48 Identities=13% Similarity=0.290 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
++++++.++..=+..|+-||..+++.+++.+.+.+++..|.++...+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555544443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.71 E-value=8.2 Score=31.63 Aligned_cols=65 Identities=17% Similarity=0.032 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 231 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 296 (499)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 296 (499)
+.+||.+.--+...|+++.|.+.|+...+..+.-+-...|.-|..| -.|++..|.+-|-..-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcC
Confidence 4466666666666777777777776666654433333333333322 3466666666555554443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.7 Score=34.84 Aligned_cols=95 Identities=11% Similarity=0.019 Sum_probs=50.8
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHh
Q 010853 59 RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 138 (499)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 138 (499)
.-+.+.|++++|..-|...++..+.. ........|..-..++.+.+.++.|+.-.....+.++. ...+...-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~-~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPST-STEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccc-cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 34556677777776666666555443 11333344555555666666666666666555555431 11222223344555
Q ss_pred cCChhhHHHHHHHHHhc
Q 010853 139 SGRNHGASRVVYVMRKR 155 (499)
Q Consensus 139 ~~~~~~A~~~~~~~~~~ 155 (499)
...++.|++=|..+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 55566666666655554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.44 E-value=6.9 Score=34.01 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=63.7
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch
Q 010853 261 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC--APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 338 (499)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 338 (499)
|......+...++..-....+++.++..+-++...... .|+. +-.+.++.+. .-++++++.++..- -..|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~np-IqYGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNP-IQYGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCc-chhccccch
Confidence 33445555555555555567777777777777653210 1111 1112222222 23556777777663 367888888
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
.+++.+|..+.+.+++..|..+...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888888777766543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.79 Score=24.45 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
|..+..++...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444555555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.03 E-value=40 Score=38.46 Aligned_cols=325 Identities=11% Similarity=-0.013 Sum_probs=151.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHh-ccCCCCCCchhhHHHHHH
Q 010853 56 VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED-MPQGKSVNEEFACGHMID 134 (499)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~ 134 (499)
.+..+=.+.+.+.+|...+++-.... . .-......|..+...|+.-+++|...-+... ... | .....|.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~e--k-~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~----~---sl~~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE--K-EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD----P---SLYQQIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc--c-hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC----c---cHHHHHH
Confidence 44556667777877776554421000 0 1111223344444578888888877666553 211 1 1223445
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccH-HHHHHHHhcCCCHH
Q 010853 135 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY-KVLVEGLCGESDLE 213 (499)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~ 213 (499)
.....|+++.|...|+.+.+.+.. ....++-++......|.++.+....+..... ..+....+ +.=+.+--+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchh
Confidence 566778888888888888877321 3566777776666677777766655444332 11222222 22233445666777
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHhc--cCChHHHHHHHHHHHhcC--------CC-CCHhhHHHHHHHHHhcCCH
Q 010853 214 KARKVLQFMLSKKDVDRTRICNIYLRALCL--IKNPTELLNVLVFMLQTQ--------CQ-PDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~--------~~-~~~~~~~~l~~~~~~~~~~ 282 (499)
.....+. .++......-. +.....+ ..+.-.-.+.++-+.+.- .. .-...|..++....-.. .
T Consensus 1536 ~~e~~l~---~~n~e~w~~~~--~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l 1609 (2382)
T KOG0890|consen 1536 LLESYLS---DRNIEYWSVES--IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-L 1609 (2382)
T ss_pred hhhhhhh---cccccchhHHH--HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-H
Confidence 6666554 11221111110 1222221 122111112222222211 11 01123444444332211 1
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC----CC-CCchhhHHHHHHHHHhcCCHHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR----GY-SPGIVTYNAVLRGLFRLRRVEEA 357 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a 357 (499)
+...+.+..........-+..-|..-+..-....+..+-+--+++.+... +. .--..+|....+.....|.++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 11111111111111001111222222222111112222222222222111 11 12245677777777778999998
Q ss_pred HHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhc
Q 010853 358 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 401 (499)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (499)
...+-...+.+ .| ..+--.+......|+...|..++++...
T Consensus 1690 ~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1690 QNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 88777776655 22 3444556667788999999998888763
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.02 E-value=3.3 Score=28.75 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010853 392 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
+.+-++.+...+..|++.+..+.+++|.+.+++..|.++|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444555555555555555555555555554444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.99 E-value=1.2 Score=23.79 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 445 CYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.86 E-value=2.5 Score=40.03 Aligned_cols=130 Identities=13% Similarity=0.084 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 010853 94 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 173 (499)
Q Consensus 94 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 173 (499)
.+.++..+-++|..++|+++- +|.. .-.....+.|+++.|.++..+.. +..-|..|.++...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 344666677777777776542 2211 12334456777777777665433 56678888888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHH
Q 010853 174 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 253 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 253 (499)
.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|. .|....++...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHH
Confidence 8888888888776543 44566666666776655555554443332 23444566677888877777
Q ss_pred HHH
Q 010853 254 LVF 256 (499)
Q Consensus 254 ~~~ 256 (499)
+..
T Consensus 744 Li~ 746 (794)
T KOG0276|consen 744 LIS 746 (794)
T ss_pred HHh
Confidence 643
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.79 E-value=11 Score=31.58 Aligned_cols=200 Identities=19% Similarity=0.113 Sum_probs=112.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHH-
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF- 310 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~- 310 (499)
........+...++...+...+...... ........+......+...+++..+...+........ .+.........
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 138 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP--DPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC--CcchHHHHHHHH
Confidence 4444444444555555555554444431 1122344455555555566666667766666665332 11122222222
Q ss_pred HHHccCCHHHHHHHHHHHhccCCC--CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-CHHhHHHHHHHHHhcC
Q 010853 311 GLLNVGRIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESN 387 (499)
Q Consensus 311 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 387 (499)
.+...|+++.+...+.+... ... ......+......+...++.+.+...+....... +. ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 56677777777777766532 111 1122233333333556678888888888777753 22 3566777777777888
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 388 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
+++.+...+......... ....+..+...+...+..+++...+.+....
T Consensus 217 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888887654332 2334444444555666788888888877765
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.78 E-value=5.4 Score=28.08 Aligned_cols=60 Identities=15% Similarity=0.038 Sum_probs=36.7
Q ss_pred HHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 010853 109 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 169 (499)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 169 (499)
+..+-++.+...+..|++....+.+.+|.+.+++..|.++|+-++.. ..+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 55666677777777777777777778888888888888887777655 1222225555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.74 E-value=13 Score=32.26 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=25.4
Q ss_pred cCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010853 371 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP-SNIHDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 371 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
++..+...++..++..+++.+-.++|+..... ++..|...|..+|+.....|+..-..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 34444444444444444444444444444322 23334444444444444444443333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.15 E-value=9.1 Score=29.82 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=9.8
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 010853 418 LCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~ 436 (499)
+...|++.+|.++|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555443
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=88.82 E-value=5.6 Score=33.94 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=55.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh---
Q 010853 202 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK--- 278 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 278 (499)
=|.+++..++|.++....-+.-+......+.+....|-.|.+.+++..+.++-...+...-.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 35667777777777665555443444445556677777777777777777777776665433344456666655544
Q ss_pred --cCCHHHHHHHH
Q 010853 279 --MGRIEEALKVL 289 (499)
Q Consensus 279 --~~~~~~a~~~~ 289 (499)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 57777777766
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.78 E-value=7.5 Score=31.39 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=60.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCH----HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGVVADS----TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 421 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (499)
.-+...|++++|..-|...+..-.+... ..|..-..++.+.+.++.|..-..+.++.++. .......-..+|-+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3467788999999988888876322121 23344445677788888888887777665443 122222334467777
Q ss_pred CCHHHHHHHHHHHHHcC
Q 010853 422 GKIHEAVHFLYELVDSG 438 (499)
Q Consensus 422 g~~~~a~~~~~~~~~~~ 438 (499)
..+++|++-|+++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888888763
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.58 E-value=15 Score=31.69 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010853 95 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 154 (499)
Q Consensus 95 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 154 (499)
....+.|..+|.+.+|.++.+.....++ .+...+..++..+...|+--.+.+-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3345667777777777777777776665 5566677777777777776666666665543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.8 Score=22.98 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 445 CYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.|..+...+...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566667777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.14 E-value=1.6 Score=24.62 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.07 E-value=4.1 Score=32.28 Aligned_cols=127 Identities=12% Similarity=0.036 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc---cCCHHHHHHHHHHHHHHhhhccCCccCH-HhHHHHHHHHHcCCCH
Q 010853 32 MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR---TRDVERANVLMFKLWERMKEEEDLSVNN-AAFANLVDSLCREGYV 107 (499)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 107 (499)
++.|++.++.-.... +.|+..++.-..++.. ..+..++..++++.+.+..+--.+.|+- .++..+..++...+.+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 455666666644433 4566666655555444 4444567777777776666544455553 3445555554433211
Q ss_pred hHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 010853 108 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 187 (499)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 187 (499)
.|+.. .....+++|.+.|+..... +|+...|+.-+....+ |-++..++
T Consensus 86 ---------------~~d~~---------~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~k------ap~lh~e~ 133 (186)
T PF06552_consen 86 ---------------TPDTA---------EAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAAK------APELHMEI 133 (186)
T ss_dssp ------------------HH---------HHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHT------HHHHHHHH
T ss_pred ---------------cCChH---------HHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHh------hHHHHHHH
Confidence 01110 0112356677777777765 7888888887777643 55566666
Q ss_pred HhCC
Q 010853 188 IQFG 191 (499)
Q Consensus 188 ~~~~ 191 (499)
.+.+
T Consensus 134 ~~~~ 137 (186)
T PF06552_consen 134 HKQG 137 (186)
T ss_dssp HHSS
T ss_pred HHHH
Confidence 5554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.02 E-value=1.5 Score=24.76 Aligned_cols=30 Identities=17% Similarity=-0.009 Sum_probs=21.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 010853 52 LTYSVLVRGVLRTRDVERANVLMFKLWERM 81 (499)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (499)
.+++.+...|...|++++|..++.+++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467778888888888888888777766543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.96 E-value=0.23 Score=38.34 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++... + +-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcc
Confidence 3556666777788888888888866655667778888888888877777777776221 1 22345666667777
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCC
Q 010853 423 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 494 (499)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 494 (499)
.++++.-++.++-... ..+..+...++++.|.+.+.+ .++...|..+++.+...++.
T Consensus 85 l~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SHHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred hHHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 7777766665432211 111112333444444433222 24678899999888877654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.92 E-value=10 Score=29.01 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=29.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHH-hHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
..++++++..++..|.-. .|+.. .-..-...+...|++++|.++|+++...+
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 466777777777776653 23322 12222334566777777777777775443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.14 E-value=18 Score=30.83 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHH----HHHHccCCHHHHHHHHHHHh
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII----FGLLNVGRIQEALNLLYQVM 329 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~ 329 (499)
.|..-|..|....+-.+...++++...-...-|.+.....+- ....+.|++++|..-|.++.
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 344455556555555555555555443322234443333221 22345566666655444444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.10 E-value=16 Score=30.40 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=14.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC
Q 010853 204 EGLCGESDLEKARKVLQFMLSK 225 (499)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~ 225 (499)
..-+..+++.+|+++|+++...
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777777776543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.09 E-value=5.3 Score=32.72 Aligned_cols=77 Identities=22% Similarity=0.154 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG--VTPNIVCYNVVIDG 452 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 452 (499)
|.+..++.+.+.+.+.+++...+.-++.++. |...-..++..++-.|++++|..-++-.-... ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455566777888888888888877766544 55566778888899999999887766555432 22234456666543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.52 E-value=47 Score=35.05 Aligned_cols=82 Identities=12% Similarity=-0.060 Sum_probs=41.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 387 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (499)
....+.....+++|.-.|+..- -....+.+|...|+|.+|..+..++.... .--..+-..|+.-+...+
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~G----------klekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCG----------KLEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhc----------cHHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcc
Confidence 3344445566666655554321 12234556666777777777766654311 001112244555566666
Q ss_pred ChhhHHHHHHHHh
Q 010853 388 QLDEAKRFWDDIV 400 (499)
Q Consensus 388 ~~~~a~~~~~~~~ 400 (499)
++-+|-++..+..
T Consensus 1014 kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1014 KHYEAAKILLEYL 1026 (1265)
T ss_pred cchhHHHHHHHHh
Confidence 6666666665543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.31 E-value=4.2 Score=33.25 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=33.9
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
.+..+.+.+.+.+|+...+.-.+..+ .|......++..++-.|++++|..-++..-..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 44555566666666666655554443 34445555666666667777666666555443
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.58 E-value=4.1 Score=29.86 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=19.3
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 431 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+..+...++-|++......+++|.+.+++..|.++|+-.+
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555554443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.56 E-value=36 Score=32.81 Aligned_cols=408 Identities=11% Similarity=0.013 Sum_probs=204.1
Q ss_pred ChhhHHHHHHhcCC---hHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHh
Q 010853 18 PVASLTSALAITGE---MDVAYKVFDEMRHCGVLPNSL-TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 93 (499)
Q Consensus 18 ~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 93 (499)
+...|..++....+ .+.+..++..++.. .|... -|-.....-.+.|..+.+..+|++.+..++ .....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip------~Svdl 115 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP------LSVDL 115 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh------hHHHH
Confidence 34556666644433 45566677777653 46544 344555666778888888888777766443 34555
Q ss_pred HHHHHHHHH-cCCCHhHHHHHHHhccCCCC--CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 010853 94 FANLVDSLC-REGYVNEVFRIAEDMPQGKS--VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 170 (499)
Q Consensus 94 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 170 (499)
|...+..+. ..|+.+...+.|+....... -.+...|...|..-..++++.....+++++.+. ....|+....-
T Consensus 116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~ 191 (577)
T KOG1258|consen 116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDR 191 (577)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHH
Confidence 555554433 56888888888888664321 123456777888878889999999999999876 23334433333
Q ss_pred HHc---c------CChhHHHHHHHHHHhC---C-CCCCcccHHHHHHHHh-cCCCHHHHHHHHHHHHhCCCCCchhhHHH
Q 010853 171 LCK---H------GGCMRAYQLLEEGIQF---G-YLPSEHTYKVLVEGLC-GESDLEKARKVLQFMLSKKDVDRTRICNI 236 (499)
Q Consensus 171 ~~~---~------~~~~~a~~~~~~~~~~---~-~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (499)
|.. . ...+++.++-...... + ..+.......-+.--. ..+..+.+.....+.. ..
T Consensus 192 f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~ 260 (577)
T KOG1258|consen 192 FKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SI 260 (577)
T ss_pred HHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HH
Confidence 322 1 1223333222222110 0 0000011111111000 0111111111111110 00
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcC-------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 010853 237 YLRALCLIKNPTELLNVLVFMLQTQ-------CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 309 (499)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (499)
--..+............++.-.... ..++..+|...+..-.+.|+.+.+.-+|+...--- ..-...|-..+
T Consensus 261 ~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--A~Y~efWiky~ 338 (577)
T KOG1258|consen 261 HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--ALYDEFWIKYA 338 (577)
T ss_pred HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--hhhHHHHHHHH
Confidence 1111111222222222222222211 12245567777777778888888888887765210 11122333333
Q ss_pred HHHHccCCHHHHHHHHHHHhccC-CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH-HhHHHHHHHHHhcC
Q 010853 310 FGLLNVGRIQEALNLLYQVMPQR-GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS-TTYAIVIDGLCESN 387 (499)
Q Consensus 310 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 387 (499)
.-....|+.+-|..++....+-. .-.|....+.+.+ +-..|++..|..+++.+.+.- |+. ..-..-+....+.|
T Consensus 339 ~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 339 RWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhc
Confidence 33334477777766654432111 1122222222222 334578888888888887753 332 22233344556677
Q ss_pred ChhhHH---HHHHHHhcCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 388 QLDEAK---RFWDDIVWPSNIHDNYVYAAMIKG-----LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 388 ~~~~a~---~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
+.+.+. .++........ +......+.-- +.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 415 ~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 415 NLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred chhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 777776 33333322111 22222222222 23356788888888888776 3556677777776655544
|
|
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.45 E-value=24 Score=30.73 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhcCCHHHHH
Q 010853 409 YVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 409 ~~~~~li~~~~~~g~~~~a~ 428 (499)
..|..|+.+++..|+.+-.+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 35777888888888776544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.34 E-value=1.6 Score=22.93 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=15.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhh
Q 010853 56 VLVRGVLRTRDVERANVLMFKLWERMK 82 (499)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (499)
.+..++.+.|++++|...+.+++++.|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 344555556666666666655555443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.89 E-value=25 Score=30.47 Aligned_cols=169 Identities=12% Similarity=0.063 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcc---------------------CCccCH
Q 010853 33 DVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE---------------------DLSVNN 91 (499)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------------~~~~~~ 91 (499)
.+|+++|.-+.... .-+.+-..++.+++...+..+|...+...+-++++.- +...|.
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv 227 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDV 227 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccH
Confidence 57999999887753 2345667788999999999999887776665554421 111122
Q ss_pred HhHHHHHHHHHcC-CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 010853 92 AAFANLVDSLCRE-GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 170 (499)
Q Consensus 92 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 170 (499)
.-|.+.++..-.. -.++++.++....+..-. ...++.-|...=+.+... -..+++.....
T Consensus 228 ~e~es~~rqi~~inltide~kelv~~ykgdyl---------------~e~~y~Waedererle~l----y~kllgkva~~ 288 (361)
T COG3947 228 QEYESLARQIEAINLTIDELKELVGQYKGDYL---------------PEADYPWAEDERERLEQL----YMKLLGKVARA 288 (361)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHhcCCcC---------------CccccccccchHHHHHHH----HHHHHHHHHHH
Confidence 2222222221111 112222222222211111 011111111111111100 11234445667
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 171 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
|..+|.+.+|.++.+..+... +.+...+..++..++..||--.+.+-++++.
T Consensus 289 yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 289 YLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 778888888888887776643 3466777778888888888666666666553
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.65 E-value=3.6 Score=36.05 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=51.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcC
Q 010853 273 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 352 (499)
Q Consensus 273 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 352 (499)
.+-|.+.|.+++|++.|....... +-+.+++..-..+|.+...+..|..-....+.-. ..-...|+.-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 345777777777777777666543 3377777777777777777776665444433211 111223444444444455
Q ss_pred CHHHHHHHHHHHhhC
Q 010853 353 RVEEAKEVFNCMLGI 367 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~ 367 (499)
...+|.+-++...+.
T Consensus 180 ~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL 194 (536)
T ss_pred hHHHHHHhHHHHHhh
Confidence 555665555555553
|
|
| >PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.50 E-value=4.9 Score=23.84 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=24.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 010853 453 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 487 (499)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 487 (499)
..+.|-..++..++++|.+.|+..+...+..+++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34556666777777777777777777777766654
|
This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.47 E-value=20 Score=28.99 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=25.1
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
|.+.....|.+|+|+..++.....+.. ......-.+.+...|+-++|..-|+.....
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 334444555555555555554443321 111122234444555555555555554444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.36 E-value=3.7 Score=21.79 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555556666666666666665554
|
... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.28 E-value=1.9 Score=22.94 Aligned_cols=28 Identities=14% Similarity=0.014 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 444 VCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3577788899999999999999999876
|
... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.89 E-value=2 Score=21.35 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=8.2
Q ss_pred HHHHHHcCCCHhHHHHHH
Q 010853 97 LVDSLCREGYVNEVFRIA 114 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~ 114 (499)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444444444444443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.61 E-value=0.82 Score=35.24 Aligned_cols=83 Identities=7% Similarity=-0.041 Sum_probs=43.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 010853 132 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 211 (499)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (499)
++..+.+.+.+.....+++.+...+..-+....+.++..|++.+..+...++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4455555666666666666666554444555666666666666655555555541 111222345555555555
Q ss_pred HHHHHHHHHH
Q 010853 212 LEKARKVLQF 221 (499)
Q Consensus 212 ~~~a~~~~~~ 221 (499)
++.+.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=83.54 E-value=18 Score=27.73 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=24.6
Q ss_pred ChhhHHHHHHHHHccCC-hhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 010853 160 SLVSYNSIVHGLCKHGG-CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 209 (499)
Q Consensus 160 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (499)
+...|..++.+.+.... --.+..+|.-+++.+.++++.-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34455555555544333 233445555555545555555555555555443
|
|
| >PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF | Back alignment and domain information |
|---|
Probab=83.30 E-value=1.5 Score=32.47 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=29.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 61 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 61 (499)
-+...|+-.+|.++|++|+.+|.+|| .|+.|+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34667888899999999999998887 488887764
|
The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity []. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.02 E-value=3.3 Score=23.99 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=11.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.01 E-value=2.9 Score=21.91 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444555555555555444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=82.84 E-value=22 Score=28.33 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 425 HEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 425 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
++|.+.|++..+. .|+..+|+.-+...
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 3444444444443 45555555555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.66 E-value=20 Score=27.57 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=29.0
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
...++.+++..++..+---..-.+...++...+ +...|++++|..+|+.+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 346666666666655322222223334444443 456667777777777766653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=82.61 E-value=70 Score=33.87 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=47.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhcC
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY--VYAAMIKGLCRSG 422 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g 422 (499)
...+.....+++|.-.|+..-+. .--+.+|..+|++.+|..+..++... .+.. +-..|+.-+...+
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcc
Confidence 33344556666666666544221 23456777778888887777766421 1222 2255667777778
Q ss_pred CHHHHHHHHHHHHH
Q 010853 423 KIHEAVHFLYELVD 436 (499)
Q Consensus 423 ~~~~a~~~~~~~~~ 436 (499)
++-+|-++..+...
T Consensus 1014 kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1014 KHYEAAKILLEYLS 1027 (1265)
T ss_pred cchhHHHHHHHHhc
Confidence 77777777766543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.59 E-value=1e+02 Score=35.64 Aligned_cols=325 Identities=11% Similarity=0.000 Sum_probs=169.9
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCC--CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKS--VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 173 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 173 (499)
.+..+-.+.+.+.+|.-.++.-..... ......+..+...|+.-+++|....+...-. . +...+. -|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-A----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-c----CccHHH-HHHHHHh
Confidence 344556677888888888887421111 0122334445558888888888777665411 1 233333 3444567
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHH
Q 010853 174 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 253 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 253 (499)
.|++..|...|+.+.+.+ ++...+++.++......|.++..+...+-............++.-+.+-.+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 899999999999988754 2236778888887778888888877766665332222233445555666778888877776
Q ss_pred HHHHHhcCCCCCHhhHHHH--HHHHHhc--CCHHHHHHHHHHHhhCCCC--------CCCHHHHHHHHHHHHccCCHHHH
Q 010853 254 LVFMLQTQCQPDVITLNTV--INGFCKM--GRIEEALKVLNDMVAGKFC--------APDAVTFTTIIFGLLNVGRIQEA 321 (499)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a 321 (499)
+. +. +..+|... .....+. .+.-.-.+.++-+.+.-+. ..-...|..++....-..-....
T Consensus 1541 l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1541 LS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred hh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 65 11 22233322 2222221 1211111222222221110 11123444554443322211111
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHH-HHHHHHHhhC----CC-CcCHHhHHHHHHHHHhcCChhhHHHH
Q 010853 322 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA-KEVFNCMLGI----GV-VADSTTYAIVIDGLCESNQLDEAKRF 395 (499)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~ 395 (499)
.. +...-......-+..-|..-+..-....+..+- ..+-+.+... +. .--..+|-...+....+|.++.|...
T Consensus 1614 ~~-l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1614 EE-LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HH-hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11 111111111111111121122111111111111 1111111111 11 12346788888888889999999988
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 396 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+-.+.+.+ . ...+-.....+...|+...|+.++++..+..
T Consensus 1693 ll~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 87776554 2 2356667778889999999999999988643
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.12 E-value=38 Score=30.49 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=8.0
Q ss_pred CCCHHHHHHHHHH
Q 010853 299 APDAVTFTTIIFG 311 (499)
Q Consensus 299 ~~~~~~~~~l~~~ 311 (499)
+-|..+|-.++..
T Consensus 16 P~di~~Wl~li~~ 28 (321)
T PF08424_consen 16 PHDIEAWLELIEF 28 (321)
T ss_pred cccHHHHHHHHHH
Confidence 4567777666643
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=81.79 E-value=57 Score=32.28 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 010853 456 LSMKREAYQILREMRKNGLNPDAVTWRILDK 486 (499)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 486 (499)
.|++.+|.+.+-.+.+.++.|...-...|.+
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp -------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 4777777777777767667776554444443
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.73 E-value=36 Score=29.90 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010853 300 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 366 (499)
Q Consensus 300 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (499)
++...-...+.++.+.++ ..++..+.+.+... + .....+.++...|+. +|...+..+.+
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~----~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG----T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC----c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344444555555555555 23444444433221 1 122344445555553 34444444443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.62 E-value=3.5 Score=23.91 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=13.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh
Q 010853 202 LVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45556666666666666666553
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.00 E-value=30 Score=28.57 Aligned_cols=161 Identities=12% Similarity=0.039 Sum_probs=83.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 345 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 345 (499)
+.+||-+.--+...|+++.|.+.|+...+.. +....+...-.-++.--|++.-|.+-+...-....-.|-...|..+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4567777777888899999999999887654 22233322222234456788888777666555554444444444333
Q ss_pred HHHHhcCCHHHHHHHH-HHHhhCCCCcCHHhHHHH-HHHHHhcCChhhHHHHHHHHhcCCC------CCCHHHHHHHHHH
Q 010853 346 RGLFRLRRVEEAKEVF-NCMLGIGVVADSTTYAIV-IDGLCESNQLDEAKRFWDDIVWPSN------IHDNYVYAAMIKG 417 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~li~~ 417 (499)
. ..-++.+|..-+ ++... .|..-|... +..|...=.. +.+++.+..-.- ..-..+|--+..-
T Consensus 177 E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 2 223455554433 33322 233333322 2222211111 222232221110 0112356666677
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 010853 418 LCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+...|+.++|..+|+-.+..+
T Consensus 247 ~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HhccccHHHHHHHHHHHHHHh
Confidence 777788888888887776553
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.90 E-value=12 Score=33.06 Aligned_cols=55 Identities=9% Similarity=0.089 Sum_probs=37.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
.+.|.+.|.+++|++.|....... +-+..++..-..+|.+...+..|+.-...++
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 456777788888888887766642 2366777766777777777777766666554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.88 E-value=65 Score=32.32 Aligned_cols=105 Identities=12% Similarity=0.029 Sum_probs=68.2
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCC-CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSV-NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
=++-+.+.+.+++|+++.+.....-.. .-.......|..+.-.|++++|-...-.|... +..-|..-+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 345566778888888887776543221 12345677888888889999988888888765 6677777777776666
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 208 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (499)
+......++ .......+...|..++..+..
T Consensus 438 ~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 654433332 111112356677777777766
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.49 E-value=66 Score=32.20 Aligned_cols=167 Identities=17% Similarity=0.094 Sum_probs=100.4
Q ss_pred hhHHHHH-HhcCChHHHHHHHHHHHhCCCCCChh-----hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHh
Q 010853 20 ASLTSAL-AITGEMDVAYKVFDEMRHCGVLPNSL-----TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 93 (499)
Q Consensus 20 ~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 93 (499)
..+..+| -...+++.|...+++....--+++-. ....+++.+.+.+... |...+.+.++..... +..+-...
T Consensus 63 l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~-~~~~w~~~ 140 (608)
T PF10345_consen 63 LRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY-GHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc-CchhHHHH
Confidence 3345555 58899999999999876543233222 2234566777766666 988888888776552 22223334
Q ss_pred HHHH-HHHHHcCCCHhHHHHHHHhccCCC---CCCchhhHHHHHHHHH--hcCChhhHHHHHHHHHhcCC---------C
Q 010853 94 FANL-VDSLCREGYVNEVFRIAEDMPQGK---SVNEEFACGHMIDSLC--RSGRNHGASRVVYVMRKRGL---------T 158 (499)
Q Consensus 94 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~g~---------~ 158 (499)
|.-+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..+.+.+.++.+..... .
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 4444 333334489999999988865432 2244445555555443 44656777777777644321 2
Q ss_pred CChhhHHHHHHHHH--ccCChhHHHHHHHHHH
Q 010853 159 PSLVSYNSIVHGLC--KHGGCMRAYQLLEEGI 188 (499)
Q Consensus 159 p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 188 (499)
|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556777776655 4677777776666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.5 bits (189), Expect = 4e-15
Identities = 24/218 (11%), Positives = 52/218 (23%), Gaps = 35/218 (16%)
Query: 256 FMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 315
Q Q L ++ A +L
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG--------------------- 155
Query: 316 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 375
Q+ + YNAV+ G R +E V + G+ D +
Sbjct: 156 -------------QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 376 YAIVIDGLCESNQLDEA-KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 434
YA + + +Q +R + + A ++ R+ +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 435 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 472
P V + ++ + ++ ++
Sbjct: 263 SLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.7 bits (179), Expect = 6e-14
Identities = 24/218 (11%), Positives = 67/218 (30%), Gaps = 4/218 (1%)
Query: 194 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 253
P E L++ G+ L+ + + + + + + L ++
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 254 LVF---MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 310
LV Q + + N V+ G+ + G +E + VL + PD +++ +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAAALQ 208
Query: 311 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 370
+ + + + M Q G + +L R ++ +V +
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 371 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 408
+ ++ + + + + + +
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.8 bits (161), Expect = 9e-12
Identities = 28/255 (10%), Positives = 68/255 (26%), Gaps = 6/255 (2%)
Query: 112 RIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 171
R+ + E A + R A + R+ +P ++
Sbjct: 43 RLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEA 102
Query: 172 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF---MLSKKDV 228
+ Q + + L A +L K+ +
Sbjct: 103 PGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL 162
Query: 229 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL-K 287
+ N + EL+ VL + PD+++ + + + + +
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIER 222
Query: 288 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 347
L M FT ++ + + +A++ + P V + +LR
Sbjct: 223 CLEQMSQEGLKLQAL--FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280
Query: 348 LFRLRRVEEAKEVFN 362
++ ++
Sbjct: 281 VYAKDGRVSYPKLHL 295
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 8e-09
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 407 DNYVYAAMIKGLCRSGKIHEAVHFL---YELVDSGVTPNIVCYNVVIDGACKLSMKREAY 463
A K + ++ A H L + + YN V+ G + +E
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 464 QILREMRKNGLNPDAVTWRILDKLHGNRGNDFG 496
+L ++ GL PD +++ + G + D G
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.1 bits (123), Expect = 3e-07
Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 4/146 (2%)
Query: 79 ERMKEEEDLSVNNAAFANLVDSLCREGYVN---EVFRIAEDMPQGKSVNEEFACGHMIDS 135
+ LS + + + Q + + ++
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 136 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ-LLEEGIQFGYLP 194
R G V+++++ GLTP L+SY + + + + + LE+ Q G
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234
Query: 195 SEHTYKVLVEGLCGESDLEKARKVLQ 220
VL+ + L+ KV
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKP 260
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.8 bits (104), Expect = 7e-05
Identities = 32/261 (12%), Positives = 74/261 (28%), Gaps = 9/261 (3%)
Query: 21 SLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR----TRDVERANVLMFK 76
++ A G V ++ G+ P+ L+Y+ ++ + R +ER M +
Sbjct: 170 AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229
Query: 77 LWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS-VNEEFACGHMIDS 135
+++ + + V + P S + + S
Sbjct: 230 EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
Query: 136 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 195
+ + ++ + S V S+ A + L+
Sbjct: 290 YPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKAL 349
Query: 196 EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLV 255
+ L E ++ + R L L +D + + L+ L + E L
Sbjct: 350 CRALRETKNRL--EREVYEGRFSLYPFLC--LLDEREVVRMLLQVLQALPAQGESFTTLA 405
Query: 256 FMLQTQCQPDVITLNTVINGF 276
L + + ++G
Sbjct: 406 RELSARTFSRHVVQRQRVSGQ 426
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 3e-11
Identities = 71/407 (17%), Positives = 135/407 (33%), Gaps = 123/407 (30%)
Query: 196 EHTYK----VLVEGLCGESDLEKARKVLQFMLSKKDVD-----RTRICNIYLRALCLIKN 246
++ YK V + D + + + + +LSK+++D + + L+
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 247 PTELLNVLV---------FM---LQTQC-QPDVIT------LNTVING---FCKMG--RI 282
E++ V F+ ++T+ QP ++T + + N F K R+
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 283 E------EALK--------VLNDMV-AGKFC-APDAVTFTTII----FGL--LNVGRIQE 320
+ +AL +++ ++ +GK A D + F + LN+
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 321 A-------LNLLYQVMPQ-----RGYSPGIVTYNAV---LRGLFR----------LRRVE 355
LLYQ+ P S + +++ LR L + L V+
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 356 EAK--EVFN--C-MLGIGV------VADS----TTYAIVIDGLCESNQLDEAKRFWDDIV 400
AK FN C +L + V D TT I +D + DE K +
Sbjct: 255 NAKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 401 W------PSNIHD-NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453
P + N ++I R G ++ + D T NV+
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNVL---- 366
Query: 454 CKLSMKREAYQILREMRKNGLNPDAV---TW---------RILDKLH 488
+ + R+ + L + P + W +++KLH
Sbjct: 367 -EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-05
Identities = 64/494 (12%), Positives = 146/494 (29%), Gaps = 125/494 (25%)
Query: 17 PPVASLTSALAITGEMDVAYKVF-DEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMF 75
P L AL E+ A V D + G + + V + V+ F
Sbjct: 135 QPYLKLRQALL---ELRPAKNVLIDGVLGSG-------KTWVALDVCLSYKVQCKMD--F 182
Query: 76 KL-WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 134
K+ W +K L L + ++ + D +
Sbjct: 183 KIFWLNLKNCNS---PETVLEMLQK-LLYQ--IDPNWTSRSDHSSNIKLRIHSI------ 230
Query: 135 SLCRSGRNHGASRVVYVMRKRGLTPSL-----VSYNSIVHGLCKHGGCMRAYQLL----E 185
+ + +++ + L V + + C ++L
Sbjct: 231 ----------QAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSC----KILLTTRF 274
Query: 186 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD-RTRICNIYLRALCLI 244
+ + +L + T + ++ ++ + +L L + D + R L +I
Sbjct: 275 KQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 245 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVT 304
E + + + L T+I + E K+ + + F P +
Sbjct: 334 A---ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--F--PPSAH 386
Query: 305 FTTIIFGLL--NVGR--IQEALNLLYQV-MPQRGYSPGIVTYNAVLRGLFRLRR-VEEAK 358
TI+ L+ +V + + +N L++ + ++ ++ ++ L+ +E
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI---YLELKVKLENEY 443
Query: 359 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418
+ ++ Y I DD++ P D Y Y+
Sbjct: 444 ALHRSIV--------DHYNI------------PKTFDSDDLIPPYL--DQYFYS------ 475
Query: 419 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR----EMRKNGL 474
H + L + I+ ++++ R + R ++R +
Sbjct: 476 ----------HIGHHLKN-------------IEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 475 NPDAVTWRILDKLH 488
+A IL+ L
Sbjct: 513 AWNASG-SILNTLQ 525
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 41/306 (13%), Positives = 75/306 (24%), Gaps = 119/306 (38%)
Query: 17 PPVASLTS--ALAITGE-----------------------MDVAYKVFD--EMRH----C 45
P T+ L+I E ++ + V + E R
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 46 GVLPNS--LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 103
V P S + +L +W + + + + V N SL
Sbjct: 379 SVFPPSAHIPTILLSL-----------------IWFDVIKSDVMVVVN-KLHKY--SLVE 418
Query: 104 EGYVNEVFRIAEDMPQGKSVNEEFACGHMID-SLCRSGRN----HGASRVV--YVMRKR- 155
+ I I L N H +V Y + K
Sbjct: 419 KQPKESTISI-----------------PSIYLELKVKLENEYALH--RSIVDHYNIPKTF 459
Query: 156 ---GLTPSLV---SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY--------KV 201
L P + Y+ I H H ++ + E F + K+
Sbjct: 460 DSDDLIPPYLDQYFYSHIGH----H---LKNIEHPERMTLF-----RMVFLDFRFLEQKI 507
Query: 202 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 261
+ + + Q K + Y R + I + F+ +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILD---------FLP--K 554
Query: 262 CQPDVI 267
+ ++I
Sbjct: 555 IEENLI 560
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.52 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.5 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.44 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.43 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.34 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.27 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.23 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.18 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.17 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.14 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.13 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.13 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.13 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.03 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.02 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.02 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.0 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.99 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.99 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.99 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.98 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.98 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.97 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.92 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.92 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.91 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.91 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.89 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.89 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.85 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.81 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.81 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.79 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.75 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.74 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.74 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.74 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.74 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.73 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.72 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.7 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.68 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.67 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.66 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.66 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.65 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.64 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.62 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.6 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.59 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.59 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.58 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.56 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.54 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.49 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.45 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.43 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.41 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.41 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.4 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.4 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.4 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.4 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.39 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.38 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.38 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.36 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.36 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.32 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.31 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.31 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.25 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.22 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.2 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.17 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.17 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.14 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.11 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.1 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.09 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.07 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.06 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.06 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.05 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.03 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.03 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.95 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.92 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.91 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.91 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.9 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.81 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.8 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.74 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.71 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.68 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.66 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.63 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.62 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.57 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.54 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.52 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.4 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.33 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.32 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.96 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.92 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.87 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.82 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.81 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.64 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.62 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.61 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.59 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.56 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.55 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.55 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.51 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.38 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.32 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.3 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.29 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.17 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.09 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.08 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.0 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.93 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.93 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.9 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.89 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.53 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.34 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.51 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.89 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.7 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.36 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.2 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.05 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.85 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.42 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.02 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.99 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.65 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.06 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.47 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.2 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.84 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.61 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.4 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.28 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.14 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.65 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.48 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.28 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.22 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.36 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-40 Score=320.48 Aligned_cols=445 Identities=11% Similarity=-0.015 Sum_probs=381.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHH
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 102 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (499)
...+.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..++.++. ...++..+++.++.+|.
T Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 91 RHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKED-------LYNRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC-------GGGTCHHHHHHHHHHHH
T ss_pred HHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHh-------ccccchhHHHHHHHHHH
Confidence 34448999999999999999864 4788899999999999999999998765442 13567889999999999
Q ss_pred cCCCHhHHHHHHHhccCC---------------CCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 010853 103 REGYVNEVFRIAEDMPQG---------------KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 167 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 167 (499)
+.|++++|.++|+++... +..++..+|+.++.+|.+.|++++|.++|+++.+.+.. +...+..+
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l 240 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQL 240 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHH
Confidence 999999999999964332 22346789999999999999999999999999987432 33333332
Q ss_pred --------------------------------------HHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 010853 168 --------------------------------------VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 209 (499)
Q Consensus 168 --------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (499)
+..|.+.|++++|.++|+++.+. +++..++..++..|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHh
Confidence 45566788999999999998775 57889999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 010853 210 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 289 (499)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 289 (499)
|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++..|.+.|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999998643 4467789999999999999999999999998665 347889999999999999999999999
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 010853 290 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 369 (499)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 369 (499)
+++.+.. +.+..+|..++.+|.+.|++++|+++|++++... +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 397 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 397 SKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9998754 5678899999999999999999999999976543 4577899999999999999999999999998865
Q ss_pred CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 010853 370 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----SNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 443 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 443 (499)
+.+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 550 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDA 550 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh
Confidence 557899999999999999999999999999765 55677 7899999999999999999999999999876 3478
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhc
Q 010853 444 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHG 489 (499)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 489 (499)
.+|..+..+|.+.|++++|.+.++++.+ +.|+ ...+..+..+|.
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHh
Confidence 8999999999999999999999999988 4564 567777766664
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-39 Score=313.30 Aligned_cols=442 Identities=10% Similarity=0.013 Sum_probs=369.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
.+.|.+..+...+..+.. ++...|+.++..+.+.|++++|..++.++... .|+..++..++.+|.+.|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~ 132 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI-------TGNPNDAFWLAQVYCCTGD 132 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHHTTC
T ss_pred cccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh-------CCCchHHHHHHHHHHHcCc
Confidence 345556666666655432 57889999999999999999999988777632 3466888999999999999
Q ss_pred HhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc---------------CCCCChhhHHHHHHHH
Q 010853 107 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR---------------GLTPSLVSYNSIVHGL 171 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------g~~p~~~~~~~l~~~~ 171 (499)
+++|..+|+.+... .++..+++.++.+|.+.|++++|.++|+++... |..++..+|+.++.+|
T Consensus 133 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 133 YARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp HHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH
Confidence 99999999998653 477889999999999999999999999853222 2234578999999999
Q ss_pred HccCChhHHHHHHHHHHhCCCCCC-cccHH--------------------------------------HHHHHHhcCCCH
Q 010853 172 CKHGGCMRAYQLLEEGIQFGYLPS-EHTYK--------------------------------------VLVEGLCGESDL 212 (499)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~--------------------------------------~l~~~~~~~~~~ 212 (499)
.+.|++++|.++|++|.+.+ |+ ...+. .++..|.+.|++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 99999999999999998854 33 22222 225566688999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 213 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 292 (499)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 292 (499)
++|.++|+++.+. +++..++..++..+.+.|++++|..+|+++.+.++. +..++..++.++.+.|++++|..+++++
T Consensus 289 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 289 RRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999998754 578889999999999999999999999999987644 7888999999999999999999999999
Q ss_pred hhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC
Q 010853 293 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 372 (499)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 372 (499)
.+.. +.+..++..++..|.+.|++++|.+.|.+++... +.+..+|+.++..+.+.|++++|.++|+++.+.+ +.+
T Consensus 366 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 440 (597)
T 2xpi_A 366 VDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGT 440 (597)
T ss_dssp HHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTC
T ss_pred HhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 8654 6789999999999999999999999999976543 4467799999999999999999999999999875 568
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhhH
Q 010853 373 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS----GVTPN--IVCY 446 (499)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~ 446 (499)
..++..++.+|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 899999999999999999999999999876544 7889999999999999999999999999876 66777 6799
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCC
Q 010853 447 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 493 (499)
Q Consensus 447 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 493 (499)
..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|+
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 999999999999999999999998854 3478999999999999987
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=252.67 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=127.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCC---------HHHHHHHHHHHhhCCCCcCHH
Q 010853 304 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR---------VEEAKEVFNCMLGIGVVADST 374 (499)
Q Consensus 304 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 374 (499)
.++.+|.+|++.|++++|+++|++ |...|+.||..+|+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~-M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDE-ARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHH-HHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 345555555555555555555555 3345555555555555555554332 566777777777777777777
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 454 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (499)
||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcc
Q 010853 455 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 490 (499)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 490 (499)
+.|+.++|.+++++|++.|..|+..||+.++..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777766654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-28 Score=225.93 Aligned_cols=154 Identities=13% Similarity=0.050 Sum_probs=66.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCC
Q 010853 26 LAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 105 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (499)
+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...+...+..- +.+..+|..+...+.+.|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~------p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN------PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCchHHHHHHHHHHHHCC
Confidence 345555555555555554432 2233444444455555555555554444333321 113344444444444444
Q ss_pred CHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010853 106 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 185 (499)
Q Consensus 106 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 185 (499)
++++|++.|+++.+..+ .+..++..+..++.+.|++++|.+.|+.+.+.... +...+..+...+...|++++|.+.|+
T Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444433221 22233444444444444444444444444433211 12233333344444444444444444
Q ss_pred HHH
Q 010853 186 EGI 188 (499)
Q Consensus 186 ~~~ 188 (499)
++.
T Consensus 160 ~al 162 (388)
T 1w3b_A 160 KAI 162 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.6e-28 Score=223.19 Aligned_cols=383 Identities=13% Similarity=0.055 Sum_probs=329.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHH
Q 010853 57 LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 136 (499)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 136 (499)
+...+.+.|++++|...+.++++..|. +...+..+...+.+.|++++|...++...+..+ .+..+|..+..++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHH
Confidence 456778899999999998888775433 456777788899999999999999999877654 5678899999999
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHHhcCCCHHHH
Q 010853 137 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS-EHTYKVLVEGLCGESDLEKA 215 (499)
Q Consensus 137 ~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 215 (499)
.+.|++++|.+.|+++.+.... +..+|..+..++...|++++|.+.|+++.+.. |+ ...+..+...+...|++++|
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHH
Confidence 9999999999999999987422 45679999999999999999999999998854 54 45677788899999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010853 216 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 295 (499)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 295 (499)
.+.|+++... .+.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...+++....
T Consensus 155 ~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999854 4455678999999999999999999999999987643 6778899999999999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHh
Q 010853 296 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 375 (499)
Q Consensus 296 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 375 (499)
. +.+..++..+...+...|++++|...+.+++... +.+..+|..+..++.+.|++++|...++++.+.. +.+..+
T Consensus 233 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 307 (388)
T 1w3b_A 233 S--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADS 307 (388)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred C--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHH
Confidence 4 5568899999999999999999999999987554 3356688999999999999999999999999875 678889
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (499)
+..+...+...|++++|...++++.+..+ .+..++..+..+|.+.|++++|.+.|+++.+..+. +...|..+...+..
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHH
Confidence 99999999999999999999999986543 36778999999999999999999999999986432 56788888888777
Q ss_pred cCC
Q 010853 456 LSM 458 (499)
Q Consensus 456 ~g~ 458 (499)
.|+
T Consensus 386 ~~~ 388 (388)
T 1w3b_A 386 MQD 388 (388)
T ss_dssp TCC
T ss_pred ccC
Confidence 653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=242.85 Aligned_cols=185 Identities=15% Similarity=0.165 Sum_probs=134.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccC---------CHHHHHHHHHHHhccCCCCCchh
Q 010853 269 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG---------RIQEALNLLYQVMPQRGYSPGIV 339 (499)
Q Consensus 269 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~ 339 (499)
++.+|++|++.|++++|+++|++|.+.+. .||..+|+.+|.+|.+.+ ..+.|.++|.+ |...|+.||..
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv-~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~-M~~~G~~Pd~~ 106 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGV-QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQ-MIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHH-HHHTTCCCCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHH-HHHhCCCCCHH
Confidence 45555555555555555555555555543 555555555555555433 35677777777 45677778888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888887888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 010853 420 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455 (499)
Q Consensus 420 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (499)
+.|+.++|.++|++|.+.|..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888877777765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-25 Score=213.46 Aligned_cols=433 Identities=9% Similarity=-0.049 Sum_probs=270.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 101 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (499)
....+.+.|++++|+..|+++...+ |++.+|..++.++.+.|++++|...+.++++.-| .+..++..++.++
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP------DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh------HHHHHHHHHHHHH
Confidence 3455588999999999999998875 7888999999999999999999998888776432 2567888899999
Q ss_pred HcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010853 102 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 181 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 181 (499)
.+.|++++|...|+.+...++ ++......++..+........+.+.+..+...+..|+...+..-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999887765 3344444455544444333334333333322222222221111111111111111111
Q ss_pred HHHHHHHhCCCC--------C-CcccHHHHHHHHhc---CCCHHHHHHHHHHHHh-----CCC--------CCchhhHHH
Q 010853 182 QLLEEGIQFGYL--------P-SEHTYKVLVEGLCG---ESDLEKARKVLQFMLS-----KKD--------VDRTRICNI 236 (499)
Q Consensus 182 ~~~~~~~~~~~~--------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ 236 (499)
.+...+...... | +...+......+.. .|+++.|..+++++.. ... +.....+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 111111111111 1 12233333333333 6777777777777765 211 112345666
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccC
Q 010853 237 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 316 (499)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (499)
+...+...|++++|...++.+.+.... ...+..+..++...|++++|...++.+.... +.+...+..+...+...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhC
Confidence 677777777777777777777766543 6667777777777777777777777777654 445666777777777777
Q ss_pred CHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHH
Q 010853 317 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 396 (499)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (499)
++++|...+.+.+... +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+
T Consensus 319 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp CTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777765433 2344566667777777777777777777776653 345566777777777777777777777
Q ss_pred HHHhcCCCCC-C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 010853 397 DDIVWPSNIH-D----NYVYAAMIKGLCR---SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 468 (499)
Q Consensus 397 ~~~~~~~~~~-~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (499)
+++....... + ...|..+..++.. .|++++|.+.++++.+... .+..++..+...|.+.|++++|...+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7765432221 1 3367777777777 7777778777777776642 2556677777777777888888777777
Q ss_pred HHH
Q 010853 469 MRK 471 (499)
Q Consensus 469 m~~ 471 (499)
+.+
T Consensus 475 a~~ 477 (514)
T 2gw1_A 475 SAD 477 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-23 Score=192.97 Aligned_cols=367 Identities=12% Similarity=0.045 Sum_probs=214.2
Q ss_pred HHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 010853 91 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 170 (499)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 170 (499)
...+..++..+.+.|++++|+.+|+.+.+..+ .+..++..+..++...|++++|...|+.+.+.+.. +...+..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 33444455555555555555555555443322 23444444555555555555555555555444221 33444445555
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCC-c---ccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCC
Q 010853 171 LCKHGGCMRAYQLLEEGIQFGYLPS-E---HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 246 (499)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 246 (499)
+...|++++|.+.|+++.+.. |+ . ..+..+...+.. ..+......+...|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 555555555555555544422 21 1 222222222000 001112334566677
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010853 247 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 326 (499)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 326 (499)
+++|...++.+.+..+ .+...+..+..+|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|...+.
T Consensus 159 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777666543 256666777777777777777777777766543 4556677777777777777777777777
Q ss_pred HHhccCCCCCchhhHHHH------------HHHHHhcCCHHHHHHHHHHHhhCCCCcC-----HHhHHHHHHHHHhcCCh
Q 010853 327 QVMPQRGYSPGIVTYNAV------------LRGLFRLRRVEEAKEVFNCMLGIGVVAD-----STTYAIVIDGLCESNQL 389 (499)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~ 389 (499)
+++... +.+...+..+ ...+...|++++|...|+.+.+.. |+ ...+..+..++.+.|++
T Consensus 236 ~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 236 ECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCH
Confidence 655332 2222233333 667778888888888888887743 33 34677778888888888
Q ss_pred hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH------------HHhcC
Q 010853 390 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG------------ACKLS 457 (499)
Q Consensus 390 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g 457 (499)
++|...++++....+ .+..+|..+..+|...|++++|.+.++++.+..+. +...+..+..+ |...|
T Consensus 312 ~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg 389 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILG 389 (450)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSC
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhC
Confidence 888888888765432 25677888888888888888888888888875322 34455555422 33334
Q ss_pred -----ChHHHHHHHHHH-HHCCCCCC-----------HhHHHHHHHHhcccCCCc
Q 010853 458 -----MKREAYQILREM-RKNGLNPD-----------AVTWRILDKLHGNRGNDF 495 (499)
Q Consensus 458 -----~~~~a~~~~~~m-~~~g~~p~-----------~~~~~~l~~~~~~~g~~~ 495 (499)
+.+++.+.++++ .+ ..|| ...+..+..+|.-.||..
T Consensus 390 ~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~ 442 (450)
T 2y4t_A 390 VKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442 (450)
T ss_dssp SSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred CCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 556778888763 33 2333 236777778887777643
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-23 Score=195.33 Aligned_cols=387 Identities=12% Similarity=0.042 Sum_probs=228.1
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHH
Q 010853 34 VAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 113 (499)
Q Consensus 34 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 113 (499)
.+...+.++.... +.+...+..++..+.+.|++++|...+.++++. .+.+..++..++.++...|++++|...
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~ 82 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDG------DPDNYIAYYRRATVFLAMGKSKAALPD 82 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555542 557788999999999999999999988887753 223688999999999999999999999
Q ss_pred HHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-h---hhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010853 114 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS-L---VSYNSIVHGLCKHGGCMRAYQLLEEGIQ 189 (499)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 189 (499)
|+.+.+.++ .+..++..+..++.+.|++++|.+.|+.+.+.. |+ . ..+..+...+...
T Consensus 83 ~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~--------------- 144 (450)
T 2y4t_A 83 LTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ--------------- 144 (450)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH---------------
Confidence 999988765 457788999999999999999999999999873 44 3 5666665441110
Q ss_pred CCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhH
Q 010853 190 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 269 (499)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 269 (499)
.+..+...+...|++++|...++++... .+.+..++..+..++...|++++|...++.+.+... .+..++
T Consensus 145 --------~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 214 (450)
T 2y4t_A 145 --------RLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAF 214 (450)
T ss_dssp --------HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHH
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHH
Confidence 0111222333344444444444444421 222333444444445555555555555544444321 244555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHH------------HHHHHccCCHHHHHHHHHHHhccCCCCCc
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI------------IFGLLNVGRIQEALNLLYQVMPQRGYSPG 337 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 337 (499)
..+..+|...|++++|...|+++.... +.+...+..+ ...+.+.|++++|...|.+++......+.
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 292 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE 292 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH
Confidence 555555666666666666665555432 2233333332 56666667777777776665543311111
Q ss_pred --hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHH
Q 010853 338 --IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 415 (499)
Q Consensus 338 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 415 (499)
...+..+..++.+.|++++|...++.+.+.. +.+..++..+..+|...|++++|...++++.+..+. +...+..+.
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 2355666666667777777777777666543 345666667777777777777777777777654332 344444444
Q ss_pred HH------------HHhcC-----CHHHHHHHHHH-HHHcCCCCCh-----------hhHHHHHHHHHhcCChHH
Q 010853 416 KG------------LCRSG-----KIHEAVHFLYE-LVDSGVTPNI-----------VCYNVVIDGACKLSMKRE 461 (499)
Q Consensus 416 ~~------------~~~~g-----~~~~a~~~~~~-~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~ 461 (499)
.+ |...| +.+++.+.+++ .... .||. ..|..+..+|...++.++
T Consensus 371 ~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22 33333 45666777776 3332 2221 245555556655555543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-23 Score=197.62 Aligned_cols=426 Identities=10% Similarity=-0.019 Sum_probs=306.1
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHH
Q 010853 51 SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 130 (499)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (499)
...+......+.+.|++++|...|.+++..- |+..++..+..++.+.|++++|+..++.+.+.++ .+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 77 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHH
Confidence 4567778888999999999999887776542 5678888999999999999999999998887664 4567888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (499)
.+..++...|++++|...|+.+.+.+. ++......++..+........+.+.+..+...+..|+...+..-........
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 889999999999999999999888753 3445555555554444333333333333322222222211111111111111
Q ss_pred CHHHHHHHHHHHHhCCC---------CCchhhHHHHHHHHhc---cCChHHHHHHHHHHHh-----cCC--------CCC
Q 010853 211 DLEKARKVLQFMLSKKD---------VDRTRICNIYLRALCL---IKNPTELLNVLVFMLQ-----TQC--------QPD 265 (499)
Q Consensus 211 ~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~ 265 (499)
.......+...+..... +.+...+......+.. .|++++|...++++.+ ... +.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 11111111111111111 1223344444444444 8999999999999987 311 223
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 345 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 345 (499)
...+..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...+.+.+... +.+...+..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 311 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHH
Confidence 5677888999999999999999999998764 338889999999999999999999999977544 44566888899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 425 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (499)
..+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+...+...|+++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999875 456778999999999999999999999999865443 5678899999999999999
Q ss_pred HHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCC
Q 010853 426 EAVHFLYELVDSGVTP-N----IVCYNVVIDGACK---LSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 493 (499)
Q Consensus 426 ~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 493 (499)
+|.+.++++.+..... + ...+..+...+.. .|++++|...++++.+.. +.+...+..+..+|.+.|+
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcC
Confidence 9999999998753221 1 3388899999999 999999999999998743 2356788888899988887
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-22 Score=194.81 Aligned_cols=426 Identities=11% Similarity=0.019 Sum_probs=284.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHH
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 102 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (499)
...+.+.|++++|++.|+++.... +.++.++..+..++.+.|++++|...+.++++.-+ .+..++..+..++.
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP------DHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------chHHHHHHHHHHHH
Confidence 444488999999999999998864 45788899999999999999999998888876532 25678888999999
Q ss_pred cCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CCChhhHHHHHHHHHccCChhHH
Q 010853 103 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL--TPSLVSYNSIVHGLCKHGGCMRA 180 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~~~~~~a 180 (499)
..|++++|...|+.+.. .+.+. ...+..+...+....|...++.+..... .+........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSL-NGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHhc-CCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999974432 22111 1234455556667788888888866411 11111122333334444555544
Q ss_pred HHHHHHHHhCCCCCCcc-cHHHHHHHHhcC--------CCHHHHHHHHHHHHhCCCCCch-------hhHHHHHHHHhcc
Q 010853 181 YQLLEEGIQFGYLPSEH-TYKVLVEGLCGE--------SDLEKARKVLQFMLSKKDVDRT-------RICNIYLRALCLI 244 (499)
Q Consensus 181 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 244 (499)
...+..... ..+... ....+...+... |++++|..+++++.+.. +.+. .++..+...+...
T Consensus 180 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 180 VSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhc
Confidence 444332211 111111 222222222222 46778888888877432 2222 2455566677778
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 010853 245 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 324 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 324 (499)
|++++|...++...+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 88888888888887764 346677778888888888888888888877654 45677788888888888888888888
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 325 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
+.+.+... +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+
T Consensus 333 ~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 333 FQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 88776544 2345567777788888888888888888887764 44566777888888888888888888887754321
Q ss_pred -----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 405 -----IHDNYVYAAMIKGLCRS----------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 405 -----~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
......+..+..++... |++++|...|+++.+... .+...+..+...|...|++++|.+.|+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11222344455666666 888888888888887643 35677788888888888888888888888
Q ss_pred HH
Q 010853 470 RK 471 (499)
Q Consensus 470 ~~ 471 (499)
.+
T Consensus 489 l~ 490 (537)
T 3fp2_A 489 AI 490 (537)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-22 Score=191.39 Aligned_cols=395 Identities=7% Similarity=-0.030 Sum_probs=289.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 101 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (499)
+...+.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|...+. .+... |+ .....+..+
T Consensus 65 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~-------~~--~~~~~~~~~ 133 (537)
T 3fp2_A 65 ISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLN-------GD--FDGASIEPM 133 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------------------CH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC-------CC--CChHHHHHH
Confidence 3445589999999999999999875 4578889999999999999999998774 33221 11 111234455
Q ss_pred HcCCCHhHHHHHHHhccCCCCC--CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh-hHHHHHHHHHc-----
Q 010853 102 CREGYVNEVFRIAEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV-SYNSIVHGLCK----- 173 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~----- 173 (499)
...+...+|...++.+....+. +........+..+....+.+.+...+...... .+... ....+...+..
T Consensus 134 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 211 (537)
T 3fp2_A 134 LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGY 211 (537)
T ss_dssp HHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhh
Confidence 5666778899999998765321 11122233455555666666555444332221 12211 22333333222
Q ss_pred ---cCChhHHHHHHHHHHhCCCCCC--------cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 010853 174 ---HGGCMRAYQLLEEGIQFGYLPS--------EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 242 (499)
Q Consensus 174 ---~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (499)
.|++++|..+++++.+.. |+ ..++..+...+...|++++|...++.+.... |+...+..+...+.
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHH
Confidence 247889999999988743 43 2246667778889999999999999998643 44778888999999
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010853 243 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 322 (499)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 322 (499)
..|++++|...++...+..+. +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999887643 67889999999999999999999999998765 456778899999999999999999
Q ss_pred HHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CcCHHhHHHHHHHHHhc----------C
Q 010853 323 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-----VADSTTYAIVIDGLCES----------N 387 (499)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g 387 (499)
..+.+.+... +.+...+..+...+...|++++|...++.+.+... ......+.....++... |
T Consensus 365 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 365 AFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 9999987654 44566888889999999999999999999876421 11222344555677777 9
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010853 388 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 439 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 439 (499)
++++|...++++.+..+. +..++..+..+|...|++++|.+.|++..+...
T Consensus 443 ~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999876543 677899999999999999999999999998753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-19 Score=164.32 Aligned_cols=326 Identities=12% Similarity=0.037 Sum_probs=155.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 010853 129 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 208 (499)
Q Consensus 129 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (499)
+..+...+...|++++|...|+.+.+.... +..++..+..++...|++++|...++++.+.. +.+...+..+...+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 334444444445555555555444443211 33444444444555555555555555444422 1123344444445555
Q ss_pred CCCHHHHHHHHHHHHhCCCC--CchhhHHH------------HHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 010853 209 ESDLEKARKVLQFMLSKKDV--DRTRICNI------------YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 274 (499)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 274 (499)
.|++++|...++++.+.... .+...+.. ....+...|++++|...++.+.+..+ .+...+..+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 55555555555554422110 11112211 12334444444444444444444332 13344444444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCH
Q 010853 275 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 354 (499)
Q Consensus 275 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 354 (499)
++...|++++|...++.+.+.. +.+...+..+...+...|++++|...+.+.+.... .+...+..+
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~---------- 228 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ--DHKRCFAHY---------- 228 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHH----------
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--cchHHHHHH----------
Confidence 5555555555555555544432 33444444444444455555555554444332221 111111100
Q ss_pred HHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 010853 355 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN----YVYAAMIKGLCRSGKIHEAVHF 430 (499)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~ 430 (499)
..+. .......+...+...|++++|...++++....+. +. ..+..+..++...|++++|.+.
T Consensus 229 -------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 229 -------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp -------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 0000 0001112245566677777777777776654333 22 1244466677777777777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHh
Q 010853 431 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLH 488 (499)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~ 488 (499)
+++..+.. +.+..++..+...+...|++++|.+.++++.+ +.|+ ...+..+.++.
T Consensus 295 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 295 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 77777653 22566777777777777777777777777766 3454 34444554444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.1e-20 Score=166.55 Aligned_cols=325 Identities=10% Similarity=0.017 Sum_probs=168.2
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHH
Q 010853 51 SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 130 (499)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (499)
+..+..+...+...|++++|...+.++++.. +.+..++..+...+...|++++|...++.+.+..+ .+..++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 75 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARL 75 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHH
Confidence 3445555555555555555555555444321 11334455555555555555555555555444332 2334444
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCC----ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTP----SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 206 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 206 (499)
.+..++...|++++|...|+...+. .| +...+..+..... ...+..+...+
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~ 130 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDA 130 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHH
Confidence 4555555555555555555555443 22 1122222211000 00011224566
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 010853 207 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 286 (499)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 286 (499)
...|++++|..+++++.+. .+.+...+..+...+...|++++|...++...+..+ .+...+..+...+...|++++|.
T Consensus 131 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777888888888777643 344556777777777888888888888887777653 36777888888888889999998
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010853 287 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 366 (499)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (499)
..++...+.. +.+...+..+.... .......+...+...|++++|...++.+.+
T Consensus 209 ~~~~~a~~~~--~~~~~~~~~~~~~~------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 209 SEVRECLKLD--QDHKRCFAHYKQVK------------------------KLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHH------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--ccchHHHHHHHHHH------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888887654 23333322111000 011111223334444555555555554444
Q ss_pred CCCCcCH----HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 367 IGVVADS----TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 367 ~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.. +.+. ..+..+..++...|++++|...++++.+..+. +..+|..+..++...|++++|.+.|+++.+.
T Consensus 263 ~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 263 TE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 32 1111 12233444555555555555555555443221 3445555555555555555555555555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-19 Score=161.72 Aligned_cols=292 Identities=11% Similarity=0.022 Sum_probs=212.3
Q ss_pred CCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHH
Q 010853 193 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 272 (499)
Q Consensus 193 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 272 (499)
..+...+..+...+...|++++|..+++++... .+.+...+..++..+...|++++|...++++.+..+. +...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK-DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 345555666666666667777777777666643 3334445555666666677777777777776665432 56677777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhc
Q 010853 273 INGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 351 (499)
Q Consensus 273 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 351 (499)
...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+...+...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 88888888 8888888888887654 4456777888888888888888888888866544 23345566677788888
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC--------CCCCHHHHHHHHHHHHhcCC
Q 010853 352 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS--------NIHDNYVYAAMIKGLCRSGK 423 (499)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 423 (499)
|++++|...++++.+.. +.+..++..+...+...|++++|...++++.... ......++..+..++...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 88888888888888765 5567788888888888888888888888876431 12345678888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHh-cccCCC
Q 010853 424 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP-DAVTWRILDKLH-GNRGND 494 (499)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~-~~~g~~ 494 (499)
+++|.+.+++..+.... +...+..+...+...|++++|.+.++++.+ +.| +...+..+..++ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCch
Confidence 99999999998887533 667888888889999999999999998876 445 566777777777 455554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-19 Score=157.49 Aligned_cols=287 Identities=8% Similarity=-0.016 Sum_probs=167.8
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 010853 124 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 203 (499)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 203 (499)
.+...+..+...+...|++++|.++|+.+.+.... +...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34455566667777777777777777777766332 44556666677777777777777777776643 22456666677
Q ss_pred HHHhcCC-CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 204 EGLCGES-DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 204 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
..+...| ++++|...++++... .+.+...+..+...+...|++++|...++...+.... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTL-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTT-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 7777777 777777777777643 2333445666666666666666666666666655432 334455566666666777
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCC-------CCCchhhHHHHHHHHHhcCCHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG-------YSPGIVTYNAVLRGLFRLRRVE 355 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~ 355 (499)
++|...++++.+.. +.+...+..+...+...|++++|...+.+.+.... .+....++..+..++...|+++
T Consensus 176 ~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 77777776666543 44556666666666666666666666665543211 0122334555555555555555
Q ss_pred HHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 356 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
+|...+++..+.. +.+..++..+..++...|++++|...++++.+..+. +...+..+..++
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 5555555555433 234444555555555555555555555555433221 334444444444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-17 Score=153.97 Aligned_cols=368 Identities=9% Similarity=-0.051 Sum_probs=295.2
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHc----C
Q 010853 33 DVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR----TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR----E 104 (499)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 104 (499)
..++..++...+.| ++..+..+...+.. .+++++|...+.+..+. + +...+..+...|.. .
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~---~~~a~~~Lg~~y~~g~g~~ 92 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----G---YTPAEYVLGLRYMNGEGVP 92 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T---CHHHHHHHHHHHHHTSSSC
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----C---CHHHHHHHHHHHHcCCCCC
Confidence 34566677766654 77888888888888 89999999988777653 1 46678888888988 8
Q ss_pred CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCC
Q 010853 105 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR----SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK----HGG 176 (499)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~~~ 176 (499)
+++++|.+.|+...+.+ +..++..|...|.. .+++++|...|++..+.| +...+..+...|.. .++
T Consensus 93 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999987765 44666778888887 789999999999998875 67778888888877 789
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc----cCChH
Q 010853 177 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG----ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL----IKNPT 248 (499)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 248 (499)
+++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+..+...+.. .++++
T Consensus 167 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999999988864 56777788888877 899999999999988654 44566667777765 78999
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHcc-----CCHH
Q 010853 249 ELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV-----GRIQ 319 (499)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~ 319 (499)
+|..+++...+.+ +...+..+...|.. .++.++|...|+...+.+ +...+..+...|... ++++
T Consensus 241 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 241 QSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 9999999988775 45566777777777 889999999999988743 556677777888776 8999
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----cCChhhH
Q 010853 320 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR---RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEA 392 (499)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 392 (499)
+|...+.+..+.. +...+..+...+...| ++++|..+|++..+.| +...+..+...|.. .+++++|
T Consensus 314 ~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 314 QAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999998876432 4456666777776656 7899999999998875 67788888888888 8999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 010853 393 KRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSGVT 440 (499)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~ 440 (499)
...+++..+.+ +...+..|...|.. .+++++|...|++..+.+..
T Consensus 387 ~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 387 AIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 99999998764 56678888888888 89999999999999988643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-17 Score=157.66 Aligned_cols=413 Identities=8% Similarity=0.021 Sum_probs=280.4
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhcc
Q 010853 39 FDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 118 (499)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 118 (499)
|++..+.. +-+...|..++.. .+.|++++|..+++++++..| -+...|...+..+.+.|++++|..+|++..
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P------~~~~~w~~~~~~~~~~~~~~~a~~~~~ral 73 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP------SSGRFWKLYIEAEIKAKNYDKVEKLFQRCL 73 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444432 3366677777774 667788888777776665433 245677777777788888888888888877
Q ss_pred CCCCCCchhhHHHHHHHH-HhcCChhhHHH----HHHHHHhc-CCCC-ChhhHHHHHHHHHc---------cCChhHHHH
Q 010853 119 QGKSVNEEFACGHMIDSL-CRSGRNHGASR----VVYVMRKR-GLTP-SLVSYNSIVHGLCK---------HGGCMRAYQ 182 (499)
Q Consensus 119 ~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~----~~~~~~~~-g~~p-~~~~~~~l~~~~~~---------~~~~~~a~~ 182 (499)
... |+...|...+... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..
T Consensus 74 ~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~ 151 (530)
T 2ooe_A 74 MKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR 151 (530)
T ss_dssp TTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHH
T ss_pred hcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHH
Confidence 765 4555666555422 34566666654 56555443 4443 34566666655543 577788888
Q ss_pred HHHHHHhCCCCCCc---ccHHHHHHHH-------------hcCCCHHHHHHHHHHH------HhCC---CCCc-------
Q 010853 183 LLEEGIQFGYLPSE---HTYKVLVEGL-------------CGESDLEKARKVLQFM------LSKK---DVDR------- 230 (499)
Q Consensus 183 ~~~~~~~~~~~~~~---~~~~~l~~~~-------------~~~~~~~~a~~~~~~~------~~~~---~~~~------- 230 (499)
+|++.++. |.. ..|....... ...+++..|..+++.+ .+.. .+|.
T Consensus 152 ~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 152 VYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 88887762 322 2222221110 1345567777766652 2221 2332
Q ss_pred -hhhHHHHHHHHhc----cCCh----HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh-------cCCHH-------HHHH
Q 010853 231 -TRICNIYLRALCL----IKNP----TELLNVLVFMLQTQCQPDVITLNTVINGFCK-------MGRIE-------EALK 287 (499)
Q Consensus 231 -~~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~ 287 (499)
...|...+..... .++. +++..+|++.....+ .+...|..+...+.+ .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 1345554433222 1232 367788888887643 367788888888775 78877 8999
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-h-hhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010853 288 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-I-VTYNAVLRGLFRLRRVEEAKEVFNCML 365 (499)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 365 (499)
+|++..+.-. +.+...|..++..+.+.|++++|..+|++++.. .|+ . ..|...+..+.+.|++++|..+|+...
T Consensus 308 ~~~~Al~~~~-p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 308 IYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHTTTTC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999986321 456888999999999999999999999998754 443 2 478888888889999999999999998
Q ss_pred hCCCCcCHHhHHHHHHH-HHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-
Q 010853 366 GIGVVADSTTYAIVIDG-LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-TPN- 442 (499)
Q Consensus 366 ~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~- 442 (499)
+.. +.+...+...... +...|+.++|..+|+...+..+ .+...|..++..+.+.|+.++|..+|++....+. .|+
T Consensus 384 ~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 384 EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp TCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred hcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 863 2233333333222 3468999999999999986643 3678899999999999999999999999998743 222
Q ss_pred -hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 443 -IVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 443 -~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
...|...+......|+.+.+..+.+++.+
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34788888888889999999999999876
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-19 Score=158.43 Aligned_cols=291 Identities=14% Similarity=0.126 Sum_probs=136.1
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHH
Q 010853 20 ASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD 99 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (499)
.+...++-+.|++++|.+.++++.. +.+|+.++.++.+.|++++|+..|.+ .+|..+|..++.
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik-----------a~D~~~y~~V~~ 69 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK-----------ADDPSSYMEVVQ 69 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc-----------CCCHHHHHHHHH
Confidence 3455566888999999999999933 35899999999999999999987633 246778999999
Q ss_pred HHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhH
Q 010853 100 SLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 179 (499)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 179 (499)
.+...|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++
T Consensus 70 ~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 70 AANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 999999999999988877664 3557788899999999999999998885 3788899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 010853 180 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 259 (499)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (499)
|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-- 203 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-- 203 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT--
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH--
Confidence 99999976 47999999999999999999999988 36789999999999999999996655432
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHhccCCCCC-
Q 010853 260 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV--GRIQEALNLLYQVMPQRGYSP- 336 (499)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~- 336 (499)
...+.....++..|.+.|.+++|..+++...... +.....|+.+.-+|++- ++..+.++.|. ..-+++|
T Consensus 204 ---~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~ 275 (449)
T 1b89_A 204 ---VVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKV 275 (449)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHH
T ss_pred ---HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHH
Confidence 2334445578999999999999999999998655 45667777776666653 44445555443 3444444
Q ss_pred -----chhhHHHHHHHHHhcCCHHHHHHHH
Q 010853 337 -----GIVTYNAVLRGLFRLRRVEEAKEVF 361 (499)
Q Consensus 337 -----~~~~~~~ll~~~~~~~~~~~a~~~~ 361 (499)
+...|..+...|...++++.|....
T Consensus 276 ~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 276 LRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 4667888998999999999887753
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-16 Score=150.57 Aligned_cols=353 Identities=8% Similarity=-0.050 Sum_probs=294.4
Q ss_pred CHHhHHHHHHHHHc----CCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCCh
Q 010853 90 NNAAFANLVDSLCR----EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR----SGRNHGASRVVYVMRKRGLTPSL 161 (499)
Q Consensus 90 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~g~~p~~ 161 (499)
+...+..+...|.. .+++++|+..|+...+.+ +..++..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 56677778888887 899999999999987764 45677778888888 899999999999998875 67
Q ss_pred hhHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCchhh
Q 010853 162 VSYNSIVHGLCK----HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG----ESDLEKARKVLQFMLSKKDVDRTRI 233 (499)
Q Consensus 162 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (499)
..+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 778888888887 789999999999998865 55677778888876 789999999999998764 5667
Q ss_pred HHHHHHHHhc----cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCHHHH
Q 010853 234 CNIYLRALCL----IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTF 305 (499)
Q Consensus 234 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 305 (499)
+..+...|.. .++.++|..+++...+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 7788888877 899999999999998875 56677788888876 789999999999998743 55667
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCcCHHhH
Q 010853 306 TTIIFGLLN----VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL-----RRVEEAKEVFNCMLGIGVVADSTTY 376 (499)
Q Consensus 306 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~ 376 (499)
..+...|.. .++.++|+..|.+.... -+...+..+...+... +++++|..+|++..+.| +...+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 777777777 89999999999997643 2445666777777776 89999999999999876 45677
Q ss_pred HHHHHHHHhcC---ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010853 377 AIVIDGLCESN---QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 377 ~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 449 (499)
..+...|...| ++++|.+.+++..+.+ +...+..+...|.. .+++++|.+.|++..+.| +...+..+
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 77888887766 7899999999998763 67788889999988 899999999999999875 56788888
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHCCC
Q 010853 450 IDGACK----LSMKREAYQILREMRKNGL 474 (499)
Q Consensus 450 ~~~~~~----~g~~~~a~~~~~~m~~~g~ 474 (499)
...|.. .+++++|...|++..+.|.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 888988 8999999999999988664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-19 Score=162.38 Aligned_cols=290 Identities=13% Similarity=0.006 Sum_probs=196.1
Q ss_pred cCChhHHHH-HHHHHHhCCC---CCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHH
Q 010853 174 HGGCMRAYQ-LLEEGIQFGY---LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 249 (499)
Q Consensus 174 ~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 249 (499)
.|++++|.+ .+++...... ..+...+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ-DPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 5554332211 112344555666666666666666666666543 23344556666666666666666
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHH---------------HHHHHHc
Q 010853 250 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT---------------IIFGLLN 314 (499)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~ 314 (499)
|...++...+..+ .+..++..+..++...|++++|...++++.... +.+...+.. .+..+..
T Consensus 117 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 117 AISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 6666666665543 255666667777777777777777777766543 122222211 1233337
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 010853 315 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 394 (499)
Q Consensus 315 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 394 (499)
.|++++|...+.+++......++..++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888999999998877655333357788888889999999999999999988764 4567888999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCChHHHHH
Q 010853 395 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP----------NIVCYNVVIDGACKLSMKREAYQ 464 (499)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~ 464 (499)
.++++....+ .+..++..+..+|...|++++|...|+++.+..... ...+|..+..+|...|++++|..
T Consensus 273 ~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999876543 367788999999999999999999999988753221 15788999999999999999998
Q ss_pred HHHHH
Q 010853 465 ILREM 469 (499)
Q Consensus 465 ~~~~m 469 (499)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 87643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-16 Score=152.94 Aligned_cols=393 Identities=10% Similarity=0.044 Sum_probs=281.8
Q ss_pred CHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 010853 90 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 169 (499)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 169 (499)
+...|..++. +.+.|++++|..+|+++.+..+ .+...|..++..+.+.|++++|..+|++.... .|+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 5678888888 4789999999999999998765 56778999999999999999999999999987 478777777775
Q ss_pred HH-HccCChhHHHH----HHHHHHh-CCCCC-CcccHHHHHHHHhc---------CCCHHHHHHHHHHHHhCCCCCchhh
Q 010853 170 GL-CKHGGCMRAYQ----LLEEGIQ-FGYLP-SEHTYKVLVEGLCG---------ESDLEKARKVLQFMLSKKDVDRTRI 233 (499)
Q Consensus 170 ~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (499)
.. ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++.++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34677777665 7776654 35544 34566666665543 6889999999999986321111234
Q ss_pred HHHHHHHH-------------hccCChHHHHHHHHHHH------hcC---CCCC--------HhhHHHHHHHHHhc----
Q 010853 234 CNIYLRAL-------------CLIKNPTELLNVLVFML------QTQ---CQPD--------VITLNTVINGFCKM---- 279 (499)
Q Consensus 234 ~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~---- 279 (499)
|....... ...++++.|..++..+. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 44332211 13445667776666532 221 2333 23455554433221
Q ss_pred CCH----HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHhccCCCCCchhhH
Q 010853 280 GRI----EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN-------VGRIQ-------EALNLLYQVMPQRGYSPGIVTY 341 (499)
Q Consensus 280 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~ 341 (499)
++. ..+..+|++..... +.+...|..++..+.+ .|+++ +|..++++.+... .+.+...|
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-~p~~~~l~ 324 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLY 324 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-CSSCHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-CcccHHHH
Confidence 232 47778888888754 5578888888887775 68876 8999999976421 23457788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC-H-HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH-H
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD-S-TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG-L 418 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 418 (499)
..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.... +...|...+.. +
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHH
Confidence 88889999999999999999999985 443 3 57888888899999999999999999865432 33333332222 3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC--HhHHHHHHHHhcccCC
Q 010853 419 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL-NPD--AVTWRILDKLHGNRGN 493 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~--~~~~~~l~~~~~~~g~ 493 (499)
...|++++|..+|++..+... .+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+....+.|+
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 468999999999999988742 3678899999999999999999999999988632 332 3478777777777776
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-18 Score=158.19 Aligned_cols=307 Identities=9% Similarity=-0.041 Sum_probs=189.5
Q ss_pred HHcCCCHhHHHH-HHHhccCCCC---CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 010853 101 LCREGYVNEVFR-IAEDMPQGKS---VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 176 (499)
Q Consensus 101 ~~~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 176 (499)
+...|++++|.. .++....... ..+...+..+...+.+.|++++|...|+.+.+.... +..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 334578888887 7776554432 123556777888888889999999999888887433 66778888888888899
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHH
Q 010853 177 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 256 (499)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 256 (499)
+++|...++++.+.. +.+..++..+...+...|++++|...++++....... ...+...... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH-------hh-------
Confidence 999998888887754 2356777888888888888888888888887543221 1111111000 00
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCC
Q 010853 257 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 336 (499)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 336 (499)
...+. ..+..+.. +...|++++|...++++.+.....++..++..+...+...|++++|...+.+.+... +.
T Consensus 178 ----~~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~ 249 (368)
T 1fch_A 178 ----GAGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PN 249 (368)
T ss_dssp -------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred ----hhccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC
Confidence 00000 01111222 226667777777777766543211146667777777777777777777777665443 33
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC----------
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH---------- 406 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------- 406 (499)
+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++....+..
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 45566677777777777777777777776653 4456667777777777777777777777765432211
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 407 DNYVYAAMIKGLCRSGKIHEAVHFLYE 433 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 433 (499)
...+|..+..+|...|++++|..++++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 156777777777777777777776654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-18 Score=155.56 Aligned_cols=264 Identities=10% Similarity=-0.033 Sum_probs=173.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 010853 199 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 278 (499)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (499)
+..+...+.+.|++++|..+|+++... .+.+..++..+...+...|++++|...+++..+..+ .+..++..+..+|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQ-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence 444444444444444444444444432 222334444455555555555555555555544432 245666677777777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCC----------HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPD----------AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 348 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 348 (499)
.|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+.+++......++..++..+...+
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 777777777777766532 111 22233457778888888888888888776653333677888888888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+..+. +..+|..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 88899999999999888764 556788888999999999999999999988765433 5778888999999999999999
Q ss_pred HHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 010853 429 HFLYELVDSGVT-----------PNIVCYNVVIDGACKLSMKREAYQILRE 468 (499)
Q Consensus 429 ~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (499)
+.|+++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999988864311 1356788899999999999888877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-18 Score=157.59 Aligned_cols=258 Identities=10% Similarity=-0.064 Sum_probs=208.9
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 010853 230 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 309 (499)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (499)
+...+......+.+.|++++|...++.+.+..+. +..++..+..++...|++++|+..|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 3446888899999999999999999999987643 78899999999999999999999999998765 56788999999
Q ss_pred HHHHccCCHHHHHHHHHHHhccCCCCCc--------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--CHHhHHHH
Q 010853 310 FGLLNVGRIQEALNLLYQVMPQRGYSPG--------IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA--DSTTYAIV 379 (499)
Q Consensus 310 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 379 (499)
..|...|++++|...+.+++....-.++ ...+..+...+...|++++|...++++.+.. +. +..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHH
Confidence 9999999999999999997754311111 1222344778889999999999999999864 33 68899999
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 459 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (499)
...|...|++++|...++++.+..+. +..+|..+..+|...|++++|.+.|+++.+.... +..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 99999999999999999999876543 6789999999999999999999999999987533 578899999999999999
Q ss_pred HHHHHHHHHHHHCCC---C--------CCHhHHHHHHHHhcccCC
Q 010853 460 REAYQILREMRKNGL---N--------PDAVTWRILDKLHGNRGN 493 (499)
Q Consensus 460 ~~a~~~~~~m~~~g~---~--------p~~~~~~~l~~~~~~~g~ 493 (499)
++|...++++.+..- . .+...|..+..++...|+
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 999999999876210 1 136788888888877775
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-19 Score=156.47 Aligned_cols=284 Identities=11% Similarity=0.087 Sum_probs=132.0
Q ss_pred ccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCCh
Q 010853 63 RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRN 142 (499)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 142 (499)
+.|+.++|.+.++++ + ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++
T Consensus 15 ~~~~ld~A~~fae~~----~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 15 HIGNLDRAYEFAERC----N-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC----C-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCH
Confidence 567788898755433 2 2358899999999999999999999753 5667899999999999999
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHH
Q 010853 143 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 222 (499)
Q Consensus 143 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 222 (499)
++|..+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999988877764 4567889999999999999999988874 377789999999999999999999999977
Q ss_pred HhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCH
Q 010853 223 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 302 (499)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 302 (499)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~a 207 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHA 207 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCH
Confidence 36999999999999999999999988 278999999999999999999966555432 333
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCc------CHHh
Q 010853 303 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-IGVVA------DSTT 375 (499)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~ 375 (499)
.-...++..|.+.|.+++|..+++..+... +-....|+.+.-.+++- .+++..+.++...+ .+++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345578899999999999999999977544 33455666666556553 34444444433322 23333 4567
Q ss_pred HHHHHHHHHhcCChhhHHHHH
Q 010853 376 YAIVIDGLCESNQLDEAKRFW 396 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~ 396 (499)
|..++..|..-++++.|....
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHH
Confidence 888999999999999887643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-17 Score=147.46 Aligned_cols=263 Identities=8% Similarity=-0.081 Sum_probs=178.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 010853 199 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 278 (499)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (499)
+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...+++..+..+ .+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQA-APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHH
Confidence 344444444445555555555444432 222333444444555555555555555555544432 245556666666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCHHHHHHH--------------HH-HHHccCCHHHHHHHHHHHhccCCCCCchhhHHH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPDAVTFTTI--------------IF-GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (499)
.|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...+.+.+... +.+...+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 177 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQLHAS 177 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHHHHH
Confidence 666666666666665543 2222222222 22 3677888899999888876544 345677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 010853 344 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 423 (499)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (499)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+..++...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcc
Confidence 8888999999999999999988764 456788889999999999999999999998765433 67788999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 424 IHEAVHFLYELVDSGVTP-----------NIVCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
+++|.+.++++.+..... +...|..+..++...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999998764332 4678889999999999999999988764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-14 Score=144.19 Aligned_cols=410 Identities=12% Similarity=0.072 Sum_probs=272.7
Q ss_pred CChhhHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhH
Q 010853 17 PPVASLTSALAITGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 94 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 94 (499)
.+...|..++...+...+ ++.++.....+ .-++.--+..+++|...|.+.+|.++++++.-. ...+.-+...-
T Consensus 951 ~d~~lW~~vl~~~n~~RR--~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 951 KDPELWGSVLLESNPYRR--PLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNLQ 1025 (1630)
T ss_pred cCHHHHHHHhcCCcHHHH--HHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHHH
Confidence 445556666644443322 23333222211 235555677788888888888888888777632 11223344555
Q ss_pred HHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 010853 95 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 174 (499)
Q Consensus 95 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 174 (499)
+.++....+. +..+..+..+.+.... ..-+...+...|.+++|..+|++... .....+.++. ..
T Consensus 1026 nlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i 1089 (1630)
T 1xi4_A 1026 NLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HI 1089 (1630)
T ss_pred HHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HH
Confidence 5566666555 4455555555554211 22366777888888888888887531 2222333332 66
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHH
Q 010853 175 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 254 (499)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 254 (499)
+++++|.++.++. -+..+|..+..++...|++++|...|.+. .+...|..++.++.+.|++++|.+++
T Consensus 1090 ~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1090 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred hhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7788888888754 24677888888888889999888888553 45567777888888889999998888
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCC
Q 010853 255 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 334 (499)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 334 (499)
....+... +....+.++.+|++.+++++...+. + .++...|..+...|...|++++|...|...
T Consensus 1158 ~mArk~~~--e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------ 1221 (1630)
T 1xi4_A 1158 QMARKKAR--ESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 1221 (1630)
T ss_pred HHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------
Confidence 87776643 3333335888888888887544432 2 456667777888888899999998888762
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHH
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 414 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 414 (499)
..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..+...+..+
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeel 1286 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 1286 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHH
Confidence 37888888888889999998888876 25578888888888888888888876643 2355567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCC------CHhHHHHHHH
Q 010853 415 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL--SMKREAYQILREMRKNGLNP------DAVTWRILDK 486 (499)
Q Consensus 415 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~g~~p------~~~~~~~l~~ 486 (499)
+..|.+.|.+++|+.+++...... +-....|+-+...|++. ++.-++.+.|..-. ++.| +...|..++-
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHH
Confidence 888899999999999998877654 33445666666666653 33344444443221 2222 4567888888
Q ss_pred HhcccCC
Q 010853 487 LHGNRGN 493 (499)
Q Consensus 487 ~~~~~g~ 493 (499)
+|.+.|+
T Consensus 1364 LY~~~~e 1370 (1630)
T 1xi4_A 1364 LYDKYEE 1370 (1630)
T ss_pred HHHhccc
Confidence 8877665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-14 Score=144.12 Aligned_cols=378 Identities=12% Similarity=0.108 Sum_probs=287.2
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHH
Q 010853 20 ASLTSALAITGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 97 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (499)
......+...|.+.+|++++++....+- .-+....+.++.+..+. +..+...+. .+.. ......+
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI----~kLd--------~~d~~eI 1055 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYI----NRLD--------NYDAPDI 1055 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHH----HHhh--------hccHHHH
Confidence 4446666899999999999999985421 12445666677766666 455554432 2221 1113348
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 177 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 177 (499)
...+...|.+++|..+|++... ...+.+.++. ..+++++|.++.++.. +..+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 8889999999999999999742 1122233332 6789999999998652 578999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHH
Q 010853 178 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 257 (499)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (499)
++|...|.+. -|...|..++.++.+.|++++|.+++....+.. +++.....++.+|++.+++++...+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9999999663 467788999999999999999999999887644 33334445899999999988655443
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc
Q 010853 258 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 337 (499)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 337 (499)
+ .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+.+. .+
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA-------~n 1249 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA-------NS 1249 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CC
Confidence 1 346667778999999999999999999974 37999999999999999999999874 35
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 417 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 417 (499)
..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|..+++...... .-....|+.+...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 689999999999999999998876643 4466778899999999999999999999887555 3355577777777
Q ss_pred HHhc--CCHHHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHhcCChHHHHH
Q 010853 418 LCRS--GKIHEAVHFLYELVDSGVTP------NIVCYNVVIDGACKLSMKREAYQ 464 (499)
Q Consensus 418 ~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~ 464 (499)
|++- ++..++.++|..-. ++++ +...|..++..|.+.|+++.|..
T Consensus 1324 yaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7765 34445555554322 2222 45679999999999999999883
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-17 Score=145.24 Aligned_cols=279 Identities=13% Similarity=-0.008 Sum_probs=146.0
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 010853 126 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 205 (499)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 205 (499)
...+..+...+...|++++|..+|+++.+.... +...+..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344455556666666666666666666655322 44556666666666666666666666665532 1244555566666
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHH-HH-HHHhcCCHH
Q 010853 206 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV-IN-GFCKMGRIE 283 (499)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~ 283 (499)
+...|++++|...++++..... .....+..+... .|+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 6666666666666666654321 111111111000 0000111111 11 244455555
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 284 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 363 (499)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 363 (499)
+|...++++.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+...+...|++++|...+++
T Consensus 156 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 156 ECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555433 3345555555555555566666655555544332 22344555555666666666666666666
Q ss_pred HhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010853 364 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-----------DNYVYAAMIKGLCRSGKIHEAVHFLY 432 (499)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~ 432 (499)
+.+.. +.+..++..+..++...|++++|...++++....+.. +..+|..+..++...|++++|..+++
T Consensus 232 a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 232 ALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55543 3345556666666666666666666666665432221 34566666677777777777766665
Q ss_pred HH
Q 010853 433 EL 434 (499)
Q Consensus 433 ~~ 434 (499)
+.
T Consensus 311 ~~ 312 (327)
T 3cv0_A 311 QN 312 (327)
T ss_dssp CC
T ss_pred HH
Confidence 43
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-16 Score=138.93 Aligned_cols=249 Identities=10% Similarity=0.023 Sum_probs=104.9
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCC--cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChH
Q 010853 171 LCKHGGCMRAYQLLEEGIQFGYLPS--EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 248 (499)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (499)
....|++..|+...+..... .|+ ......+.++|...|+++.|...++. ..+|+...+..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 33455555555555544322 122 12333445555555555555543322 12223334444444444444445
Q ss_pred HHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010853 249 ELLNVLVFMLQTQCQP-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 327 (499)
Q Consensus 249 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 327 (499)
+|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555554444433222 223333333444444555555444443 12334444444444444444444444444
Q ss_pred HhccCCCCCchhhH---HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 328 VMPQRGYSPGIVTY---NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 328 ~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
+.... |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++....+
T Consensus 156 ~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 156 MQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33221 221100 111122222344444444444444432 33444444444444444444444444444443322
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 010853 405 IHDNYVYAAMIKGLCRSGKIHE-AVHFLYELVDS 437 (499)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 437 (499)
. +..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 2 33344444444444444433 33444444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-16 Score=138.98 Aligned_cols=256 Identities=11% Similarity=0.063 Sum_probs=156.3
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCch--hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 205 GLCGESDLEKARKVLQFMLSKKDVDRT--RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
.....|++..|+..++.... ..|+. .....+.++|...|+++.|...++. .-+|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 34456777777776665532 22222 2445556677777777777665533 1244566666667777777777
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 362 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 362 (499)
++|++.++++...+..+.+...+..+...+...|++++|++.+.+ +.+...+..+...+.+.|++++|...++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777665432133455556666677777777777776644 3455566666777777777777777777
Q ss_pred HHhhCCCCcCHHhH---HHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010853 363 CMLGIGVVADSTTY---AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 439 (499)
Q Consensus 363 ~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 439 (499)
.+.+.. |+.... ..++..+...|++++|..+|+++.+..+ .+...|+.+..++...|++++|.+.|+++.+...
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 776653 332211 1222333445677777777777765533 3666677777777777777777777777776643
Q ss_pred CCChhhHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHh
Q 010853 440 TPNIVCYNVVIDGACKLSMKRE-AYQILREMRKNGLNPDAV 479 (499)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~ 479 (499)
. +..++..++..+...|+.++ +.++++++.+ +.|+..
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 2 55667777777777777654 4567776665 345443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-19 Score=169.33 Aligned_cols=152 Identities=13% Similarity=0.112 Sum_probs=124.9
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHH
Q 010853 336 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG---IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 412 (499)
Q Consensus 336 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (499)
.-..||+++|.+|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999988764 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HhHHHHHH
Q 010853 413 AMIKGLCRSGK-IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD------AVTWRILD 485 (499)
Q Consensus 413 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~l~ 485 (499)
++|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++.++++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999987 478899999999999999999999888766553 455555555 4456655 55566666
Q ss_pred HHhcccC
Q 010853 486 KLHGNRG 492 (499)
Q Consensus 486 ~~~~~~g 492 (499)
+.|.+.|
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-15 Score=144.44 Aligned_cols=398 Identities=11% Similarity=-0.040 Sum_probs=239.8
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccC---CccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCC-----
Q 010853 49 PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED---LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG----- 120 (499)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 120 (499)
.....|+.+...+...|++++|+..+.+.++-.+...+ ..-...+|+.+..+|...|++++|...++...+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34667999999999999999999999988776554322 1223567889999999999999998888775421
Q ss_pred --CCCCchhhHHHHHHHHHh--cCChhhHHHHHHHHHhcCCCCChhhHHHHHHH---HHccCChhHHHHHHHHHHhCCCC
Q 010853 121 --KSVNEEFACGHMIDSLCR--SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG---LCKHGGCMRAYQLLEEGIQFGYL 193 (499)
Q Consensus 121 --~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 193 (499)
.......++..+..++.. .+++++|.+.|++..+..+. ++..+..+..+ +...++.++|++.+++..+...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 111223445555445544 45789999999998887432 44455544444 3456777888888888776431
Q ss_pred CCcccHHHHHHHHh----cCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhH
Q 010853 194 PSEHTYKVLVEGLC----GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 269 (499)
Q Consensus 194 ~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 269 (499)
.+...+..+...+. ..+++++|.+++++.... .+....++..+...+...|++++|...+.+..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 23344444444433 356778888888887743 4455667777888888888888888888888776533 45556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 349 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 349 (499)
..+..+|...+... .... ...... .....+..+.|...+.+..... +.+..++..+...+.
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~--~~~~~~------~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR--ENGMYG------KRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC--------C------HHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---------hhHH--HHHHHH------HHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHH
Confidence 66655553221111 0000 000000 0111223567777777766544 344567788888999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHH--hHHHHHH-HHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADST--TYAIVID-GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 426 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 426 (499)
..|++++|...|++..+....+... .+..+.. .....|++++|...+++..+..+ +..... +..+.
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~---------~~~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKE---------KMKDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHH---------HHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHH---------HHHHH
Confidence 9999999999999988765333221 2223322 24567899999999999876543 322221 22344
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHhHH
Q 010853 427 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG-LNPDAVTW 481 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~ 481 (499)
+.+++++....+ +.+..+|..+...|...|++++|++.|++.++.| ..|+..+|
T Consensus 415 l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 415 LQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 556666666654 3367899999999999999999999999998754 23454444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.6e-18 Score=162.22 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=108.1
Q ss_pred CcCHHhHHHHHHHHHhcCChhhHHHHHHHHh---cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 010853 370 VADSTTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 446 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 446 (499)
..-..||++||++|++.|++++|.++|++|. ..|..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3456789999999999999999999998875 4578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 010853 447 NVVIDGACKLSMK-REAYQILREMRKNGLNPDAVTWRILDK 486 (499)
Q Consensus 447 ~~l~~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~l~~ 486 (499)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 9999999999985 789999999999999999999994443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-14 Score=137.61 Aligned_cols=383 Identities=9% Similarity=-0.055 Sum_probs=234.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC--------CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCC-c-cCH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHC--------GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL-S-VNN 91 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~-~~~ 91 (499)
+..++...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+.++.+-.+...+. . ...
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 344558899999999999987542 112245678999999999999999999998887755543221 1 234
Q ss_pred HhHHHHHHHHHc--CCCHhHHHHHHHhccCCCCCCchhhHHHHHHH---HHhcCChhhHHHHHHHHHhcCCCCChhhHHH
Q 010853 92 AAFANLVDSLCR--EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS---LCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 166 (499)
Q Consensus 92 ~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ 166 (499)
.++..+..++.. .+++++|++.|++..+..+ .+...+..+..+ +...++.++|++.+++..+.... +..++..
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~ 214 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHH
Confidence 566666666554 4579999999999887664 334455444444 44568889999999998877432 4556665
Q ss_pred HHHHHHc----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 010853 167 IVHGLCK----HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 242 (499)
Q Consensus 167 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (499)
+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...+++..+. .+.+..++..+..+|.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-IPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-CCChHHHHHHHHHHHH
Confidence 5555544 567889999999887754 235677888999999999999999999999853 3444556666655543
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010853 243 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 322 (499)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 322 (499)
..+... .... ...........+..+.|...++...... +.+..++..+...+...|++++|.
T Consensus 293 ~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 293 AKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHH
Confidence 211110 0000 0000111111234567777777776654 455666777888888888888888
Q ss_pred HHHHHHhccCCCCCch-hhHHHHHH-HHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 323 NLLYQVMPQRGYSPGI-VTYNAVLR-GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 323 ~~~~~~~~~~~~~~~~-~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
..|.+.+....-..+. ..+..+.. .....|++++|+..|.+..+.. |+...... ....+..+++...
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l 423 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHH
Confidence 8888766433111111 11222221 2346788888888888887753 33322221 2233445555555
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 401 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
..++. +..+|..+..+|...|++++|++.|++.++.+
T Consensus 424 ~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 424 SKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44432 56678888888888898899999998888765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.9e-15 Score=126.31 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=164.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCC----HHHHHH
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPD----AVTFTT 307 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~ 307 (499)
.+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...+++..+... ..++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45555566666666666666666666655 4666777777777777777777777777665321 0111 466777
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 387 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (499)
+...+...|++++|...+.+.+... |+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~---~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH---RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC---chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 7778888888888888887766432 332 33556677888888888888764 445667788888888889
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 010853 388 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 467 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 467 (499)
++++|...++++....+. +..+|..+..++...|++++|.+.++++.+... .+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999888765543 677888888899999999999999999888753 357788888888999999999999998
Q ss_pred HHHH
Q 010853 468 EMRK 471 (499)
Q Consensus 468 ~m~~ 471 (499)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-15 Score=124.03 Aligned_cols=199 Identities=11% Similarity=0.021 Sum_probs=140.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHH
Q 010853 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (499)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++.+... +.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 455566667777777777777777777777654 4566777777777777777777777777766543 334556666
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHH
Q 010853 344 VLRGLFRL-----------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 412 (499)
Q Consensus 344 ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (499)
+..++... |++++|...+++..+.. +.+...+..+..++...|++++|...++++.+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 67777777 88999999998888764 4467788888888999999999999999888776 5778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
.+..+|...|++++|+..|++..+..+. +...+..+...+...|++++|...+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8889999999999999999998887533 66778888888889999999988887764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-14 Score=135.40 Aligned_cols=378 Identities=9% Similarity=-0.036 Sum_probs=199.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCH---hHHHHHHHhccCCCCCCchhhHHHH
Q 010853 56 VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV---NEVFRIAEDMPQGKSVNEEFACGHM 132 (499)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l 132 (499)
.+...+.+.|++++|...+.++.+. + +...+..+...+...|+. ++|++.|+...+. +..++..+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~-----g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~L 75 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL-----G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----T---CCTGGGTCC--------------------------------CHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-----C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHH
Confidence 4677788888888888877666432 2 334455566667777777 7888888777654 34455556
Q ss_pred HHHHHhcC-----ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChh---HHHHHHHHHHhCCCCCCcccHHHHHH
Q 010853 133 IDSLCRSG-----RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM---RAYQLLEEGIQFGYLPSEHTYKVLVE 204 (499)
Q Consensus 133 ~~~~~~~~-----~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~ 204 (499)
...+...+ ++++|...|++..+.| +...+..|...|...+..+ .+.+.+......| +......+..
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~ 149 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVL 149 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHH
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 66454444 6678888888877765 2336666666666554433 3444554444433 3455566666
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC---ChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc--
Q 010853 205 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK---NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM-- 279 (499)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 279 (499)
.|...+.++.+......+.......++..+..+...|...| +.++|+..|+...+.|.. +...+..+...|...
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATL 228 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGG
T ss_pred HHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCC
Confidence 66666644433333222222111222236666666666677 677777777777776643 444445556666544
Q ss_pred --CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcC--
Q 010853 280 --GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG-L--LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR-- 352 (499)
Q Consensus 280 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 352 (499)
+++++|...|+... .+ +...+..+... + ...+++++|+..|.+.... + +...+..+...|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa-~g----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCHHHHHHHHHHHc-CC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCC
Confidence 57777777777766 22 33344444444 2 4567777777777775532 2 4445555555554 44
Q ss_pred ---CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----c
Q 010853 353 ---RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----S 421 (499)
Q Consensus 353 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 421 (499)
++++|..+|++.. .| +...+..|...|.. ..++++|...|++..+.|. ......|...|.. .
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBC
T ss_pred CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCC
Confidence 7777777777766 33 45556666655554 3377777777777766543 2234455555543 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 422 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 422 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
.+.++|...|+...+.|.. +.......+......++.++|.++.++..
T Consensus 372 ~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4677777777777766532 22222222222223334555666655543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-14 Score=132.77 Aligned_cols=380 Identities=11% Similarity=-0.013 Sum_probs=252.4
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH---HHHHHHHHHHHHHhhhccCCccCHHhHHH
Q 010853 20 ASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV---ERANVLMFKLWERMKEEEDLSVNNAAFAN 96 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (499)
..+...+.+.|++++|++.|++..+.| ++..+..|...+...|+. ++|...|.+..+. ++..+..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---------~~~A~~~ 74 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---------SPRAQAR 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------CHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---------CHHHHHH
Confidence 335666689999999999999998876 455667777788888888 8998877766532 4456666
Q ss_pred HHHHHHcCC-----CHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChh---hHHHHHHHHHhcCCCCChhhHHHHH
Q 010853 97 LVDSLCREG-----YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH---GASRVVYVMRKRGLTPSLVSYNSIV 168 (499)
Q Consensus 97 l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~g~~p~~~~~~~l~ 168 (499)
+...+...+ ++++|+..|+...+.|.. .++..|...|...+..+ ++.+.+......| +...+..+.
T Consensus 75 Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg 148 (452)
T 3e4b_A 75 LGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQV 148 (452)
T ss_dssp HHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHH
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 777565555 788999999998876642 36777888887766544 4555565555554 466777788
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC---CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcc-
Q 010853 169 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES---DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI- 244 (499)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 244 (499)
..|...+.++++......+.+.-...++..+..+...|...| +.++|...|++..+.+ .+....+..+...|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 888888866655554333332222334458888888999999 9999999999998655 44444445666666654
Q ss_pred ---CChHHHHHHHHHHHhcCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccC--
Q 010853 245 ---KNPTELLNVLVFMLQTQCQPDVITLNTVING-F--CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG-- 316 (499)
Q Consensus 245 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 316 (499)
+++++|..+|+... . -+...+..+... + ...+++++|...|++..+.+ +...+..+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCC
Confidence 79999999999987 3 355666677766 4 56899999999999998754 6677777777777 55
Q ss_pred ---CHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----
Q 010853 317 ---RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE---- 385 (499)
Q Consensus 317 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 385 (499)
++++|...|.+.. +-+...+..+...|.. ..++++|..+|+...+.|. ......|...|..
T Consensus 299 ~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGT 370 (452)
T ss_dssp SCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTB
T ss_pred CCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCC
Confidence 9999999998855 3355666667666665 3499999999999999873 3455666666664
Q ss_pred cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 386 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
..+.++|...++...+.|.. +.......+......++.++|.++.++.+.
T Consensus 371 ~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46899999999999877643 222222222222333466777777777654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-15 Score=126.22 Aligned_cols=118 Identities=10% Similarity=-0.033 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHH
Q 010853 316 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 395 (499)
Q Consensus 316 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 395 (499)
|++++|...+.+..... +.+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...
T Consensus 119 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44444444444433221 1223344444445555555555555555554433 33445555555555555666666665
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 396 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
++++.+..+. +...|..+..++...|++++|.+.+++..+.
T Consensus 196 ~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 196 CNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5555543322 3445555666666666666666666655543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-12 Score=121.72 Aligned_cols=446 Identities=10% Similarity=-0.013 Sum_probs=303.5
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC---Hh
Q 010853 32 MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY---VN 108 (499)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~ 108 (499)
..+.+..|++.+... +-|...|..++..+.+.++++.+..+|++++...|. ....|..-+..-.+.|+ ++
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~------~~~lW~~Yi~~E~~~~~~~~~~ 120 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL------MANIWCMRLSLEFDKMEELDAA 120 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTC--CCCHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHhhCCcchHH
Confidence 455666677766654 468999999999999999999999998888876554 45677778888888888 99
Q ss_pred HHHHHHHhccCCCC-CCchhhHHHHHHHHHhcCCh--------hhHHHHHHHHHh-cCC-CCC-hhhHHHHHHHHHc---
Q 010853 109 EVFRIAEDMPQGKS-VNEEFACGHMIDSLCRSGRN--------HGASRVVYVMRK-RGL-TPS-LVSYNSIVHGLCK--- 173 (499)
Q Consensus 109 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~-~g~-~p~-~~~~~~l~~~~~~--- 173 (499)
.+..+|++.....+ .|++..|...+....+.++. +...++|+.... .|. .|+ ...|...+.....
T Consensus 121 ~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 99999999887652 36777888887766665553 334577877554 366 554 4577777765432
Q ss_pred ------cCChhHHHHHHHHHHhCCCCCCcccHHH---HHHHHh----------cCCCHHHHHHHHHHHHh--CCC---CC
Q 010853 174 ------HGGCMRAYQLLEEGIQFGYLPSEHTYKV---LVEGLC----------GESDLEKARKVLQFMLS--KKD---VD 229 (499)
Q Consensus 174 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~----------~~~~~~~a~~~~~~~~~--~~~---~~ 229 (499)
.++++.+..+|+..+......-..+|.. ...... ...+++.|...+.++.. .+. .|
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 3456788899999875211111122321 111110 01123344445544321 011 01
Q ss_pred c--------------------hhhHHHHHHHHhccC-------ChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 230 R--------------------TRICNIYLRALCLIK-------NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 230 ~--------------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
. ...|...+..--..+ ..+.+..+|++.+...+ -+...|-..+..+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcH
Confidence 0 124555544332222 12345667877776643 3777888888888889999
Q ss_pred HHHH-HHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCC--------CCC------------chhhH
Q 010853 283 EEAL-KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG--------YSP------------GIVTY 341 (499)
Q Consensus 283 ~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~------------~~~~~ 341 (499)
++|. ++|+...... +.+...|...+...-+.|+++.|.++|++++.... -.| ....|
T Consensus 360 ~~a~r~il~rAi~~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 360 STVITKYLKLGQQCI--PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp TTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 9996 9999988643 56677778888888899999999999998775310 013 12357
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc-CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
...+....+.|+.+.|..+|....+.-.......|...+..-.+. ++.+.|..+|+...+.- ..+...|..++.....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHh
Confidence 777777788899999999999998861122334444333333344 45999999999998763 3366778899998899
Q ss_pred cCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcc
Q 010853 421 SGKIHEAVHFLYELVDSGVTP--NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 490 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 490 (499)
.|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+.++.+++.+ ..|+......+.+-|.-
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEFTNKYKV 586 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHHHHHTCB
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHhcC
Confidence 999999999999998874322 345788888888889999999999999988 45776677777666643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-14 Score=120.50 Aligned_cols=193 Identities=15% Similarity=0.036 Sum_probs=98.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
+..+...+...|++++|...++...+..+. +...+..+..++.+.|++++|+..+++..+.. +.+...+..+...+.
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 333333444444444444444444333221 44445555555555555555555555555433 334445555555555
Q ss_pred cc-----------CCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHH
Q 010853 314 NV-----------GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 382 (499)
Q Consensus 314 ~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (499)
.. |++++|+..+.+.+... +.+...+..+..++...|++++|+..|++..+.. .+...+..+..+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 55 66666666666655433 2234455566666666666666666666666654 456666666666
Q ss_pred HHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 383 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 434 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 434 (499)
+...|++++|...++++.+..+. +...+..+..++...|++++|++.+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66667777777776666654433 4556666666666677777776666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-13 Score=120.75 Aligned_cols=164 Identities=9% Similarity=0.005 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 010853 269 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 348 (499)
Q Consensus 269 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 348 (499)
|..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+...+
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHH
Confidence 4555555555555555555555555433 2344455555555555566666655555544321 22233333333122
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC---hhhHHHHHHHHhcCC-CCCC------HHHHHHHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPS-NIHD------NYVYAAMIKGL 418 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~ 418 (499)
...+++++|...|+++.+.. +.+...+..+..++...|+ ++.|...++++.+.. ..|+ ..+|..+...|
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 33345555555555555432 2234444444455554444 444555554443211 0011 12344444455
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 010853 419 CRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~ 437 (499)
...|++++|.+.++++.+.
T Consensus 232 ~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 5555555555555555444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-13 Score=115.89 Aligned_cols=213 Identities=9% Similarity=-0.027 Sum_probs=150.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHH
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 344 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 344 (499)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHH
Confidence 44556667777777777777777777776643 4456677777777777777777777777765443 3345566777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhhCCCCc-CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 345 LRGLFRL-RRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 345 l~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
...+... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+..+. +...+..+..++...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcC
Confidence 7777777 88888888888777632222 3566777777888888888888888887765433 5667788888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 423 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
++++|.+.++++.+.....+...+..+...+...|+.+.+..+++.+.+ ..|+......+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~ 221 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTV 221 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 8888888888887765324566677777777888888888888888765 34655544443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=9.8e-14 Score=119.30 Aligned_cols=208 Identities=13% Similarity=0.053 Sum_probs=125.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHH
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 346 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 346 (499)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.+.+.+... +.+...+..+..
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 113 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHH
Confidence 345555555666666666666666655443 3445556666666666666666666666654332 224445555666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCc-CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010853 347 GLFRLRRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 425 (499)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (499)
.+...|++++|..+++++.+.+..| +...+..+..++...|++++|...++++...... +...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666522222 3445566666666777777777777666654332 4556666777777777777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHH
Q 010853 426 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 482 (499)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 482 (499)
+|...++++.+... .+...+..+...+...|++++|.+.++++.+ ..|+...+.
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~ 246 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHHHH
Confidence 77777777666532 3455666666667777777777777777765 335444433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=119.73 Aligned_cols=251 Identities=10% Similarity=0.010 Sum_probs=189.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC--HHHHHHHHH
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD--AVTFTTIIF 310 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~ 310 (499)
.+......+...|++++|...+++..+..+. +...+..+..++...|++++|+..+++..+... .++ ...|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN-ATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-TTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-chhHHHHHHHHHHH
Confidence 3444556666677777777777777665432 555788888899999999999999999987331 222 445889999
Q ss_pred HHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChh
Q 010853 311 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390 (499)
Q Consensus 311 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (499)
.+...|++++|+..+.+.+... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987654 3355688899999999999999999999998874 556777777773444556999
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHHhcCChH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSG-VTPN------IVCYNVVIDGACKLSMKR 460 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~ 460 (499)
+|...++++.+..+. +...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999876543 56778888888888888 888999999888642 1233 257788889999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HhHHHHHHHHhccc
Q 010853 461 EAYQILREMRKNGLNPD-AVTWRILDKLHGNR 491 (499)
Q Consensus 461 ~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 491 (499)
+|.+.++++.+ +.|+ ...+..+.......
T Consensus 239 ~A~~~~~~al~--~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 239 KADAAWKNILA--LDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHC------
T ss_pred HHHHHHHHHHh--cCccHHHHHHHhhhhhccc
Confidence 99999999988 4565 44554544444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-14 Score=121.58 Aligned_cols=212 Identities=15% Similarity=0.144 Sum_probs=151.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHH
Q 010853 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (499)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 96 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYG 96 (243)
T ss_dssp ---------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHH
Confidence 345567777778888888888888888887754 5567788888888888888888888888876543 345667778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 010853 344 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 423 (499)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (499)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++...... +...+..+...+...|+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCC
Confidence 8888888899999999998888764 456778888888899999999999999988765433 66788888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHH
Q 010853 424 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRIL 484 (499)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 484 (499)
+++|.+.++++.+... .+..++..+..+|...|++++|.+.++++.+ ..|+ ...+..+
T Consensus 175 ~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~ 233 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHMLALHAK 233 (243)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchHHHHHHH
Confidence 9999999999888753 3577888888999999999999999999887 3454 3344333
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-13 Score=115.53 Aligned_cols=201 Identities=12% Similarity=0.004 Sum_probs=157.4
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 010853 232 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 311 (499)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (499)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHH
Confidence 4556666667777777777777777766543 356777888888888888888888888887654 4567788888888
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChh
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSP-GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (499)
+...|++++|.+.+.+.+. .+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 8889999999998888765 22233 45677778888888999999999999888764 446778888888999999999
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+|...++.+.+... .+...+..+...+...|++++|.+.++++.+..
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999876544 366778888888999999999999999988864
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-14 Score=123.13 Aligned_cols=247 Identities=11% Similarity=-0.044 Sum_probs=163.9
Q ss_pred cCCCHHHHHHHHHHHHhCCCC---CchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH
Q 010853 208 GESDLEKARKVLQFMLSKKDV---DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 284 (499)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (499)
..|++++|...++++.+.... .+..++..+...+...|++++|...+++..+..+. +...+..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 446677777777776654211 12345666667777777777777777777665432 56777778888888888888
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 285 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 364 (499)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 364 (499)
|...|+++.+.. +.+...+..+...+...|++++|...+.+++... |+.......+..+...|++++|...+...
T Consensus 96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888888877654 4456777788888888888888888888766443 33333344444556668888888888777
Q ss_pred hhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010853 365 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH---DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 441 (499)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 441 (499)
.... +++...+ .++..+...++.++|...++.+....... +..++..+..+|...|++++|...|+++.+.+ |
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 6643 3333333 36666777778888888888876433211 14577888888888889999998888888763 3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHH
Q 010853 442 NIVCYNVVIDGACKLSMKREAYQIL 466 (499)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (499)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 233355667777777777665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-13 Score=113.25 Aligned_cols=202 Identities=8% Similarity=-0.036 Sum_probs=153.8
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q 010853 231 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 310 (499)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (499)
...+..+...+...|++++|...++...+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 44566666667777777777777777666543 256677778888888888888888888887654 456777888888
Q ss_pred HHHcc-CCHHHHHHHHHHHhccCCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC
Q 010853 311 GLLNV-GRIQEALNLLYQVMPQRGY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 311 ~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (499)
.+... |++++|...+.+.+. .+. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 88888 888888888888765 222 2335667778888888899999999988887764 4457788888888899999
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
+++|...++++....+..+...+..+...+...|+.+++..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999988876554246667777888888889999999988888765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-13 Score=123.13 Aligned_cols=246 Identities=7% Similarity=0.081 Sum_probs=169.6
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR-IEEALKVLNDMVAGKFCAPDAVTFTTIIFG 311 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (499)
.+..+...+...|++++|+..+++.++..+. +...|+.+..++...|+ +++|+..|+++.... +.+...|..+..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 4555555666666666666666666665433 56677777777777785 888888888777654 4567777777778
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh-cCChh
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-SNQLD 390 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 390 (499)
+...|++++|+..|.+++... +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 888888888888887776554 3456677777777778888888888888887765 4467777777777777 55546
Q ss_pred hH-----HHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC------
Q 010853 391 EA-----KRFWDDIVWPSNIHDNYVYAAMIKGLCRSG--KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS------ 457 (499)
Q Consensus 391 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 457 (499)
+| ...+++++...+. +...|..+..++...| ++++|++.+.++ +.+ ..+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4677777665544 5667777777777777 578888888777 332 335567777777777763
Q ss_pred ---ChHHHHHHHHHH-HHCCCCCC-HhHHHHHHHHhc
Q 010853 458 ---MKREAYQILREM-RKNGLNPD-AVTWRILDKLHG 489 (499)
Q Consensus 458 ---~~~~a~~~~~~m-~~~g~~p~-~~~~~~l~~~~~ 489 (499)
..++|+++++++ .+ +.|. ...|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 247788888887 55 4553 455665555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-12 Score=110.76 Aligned_cols=222 Identities=9% Similarity=-0.083 Sum_probs=162.2
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCHHHHHH
Q 010853 232 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTFTT 307 (499)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 307 (499)
..+..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 79 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHH
Confidence 344555555666666666666666665522 44566667777777 778888888887777643 5666777
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHhHHHH
Q 010853 308 IIFGLLN----VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIV 379 (499)
Q Consensus 308 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 379 (499)
+...|.. .+++++|+..+.+..... +...+..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 7777777 788888888887766432 55667777777777 788888888888888765 55666777
Q ss_pred HHHHHh----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 380 IDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 380 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 888888888888887653 45677778888888 888888888888888764 2567777778
Q ss_pred HHHh----cCChHHHHHHHHHHHHCC
Q 010853 452 GACK----LSMKREAYQILREMRKNG 473 (499)
Q Consensus 452 ~~~~----~g~~~~a~~~~~~m~~~g 473 (499)
.|.. .+++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888 888888999888888754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-14 Score=122.20 Aligned_cols=187 Identities=11% Similarity=-0.055 Sum_probs=134.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHc
Q 010853 27 AITGEMDVAYKVFDEMRHCGVL---PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 103 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (499)
...|++++|+..|+++.+.... .+..++..+...+...|++++|...+.++++.-+ .+..++..+...+..
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP------DMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHH
Confidence 4568889999999998886321 2456788888888899999999888877776422 246678888888888
Q ss_pred CCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHH
Q 010853 104 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 183 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 183 (499)
.|++++|.+.|+...+..+ .+..++..+..++...|++++|...|+.+.+. .|+.......+..+...|++++|...
T Consensus 90 ~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888888888776554 34567777888888888888888888888776 34544444455555667888888888
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010853 184 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
+.+..... |+......++..+...++.++|...++....
T Consensus 167 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 167 LKQHFEKS--DKEQWGWNIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHHHHHHS--CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHHHhcC--CcchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 87766542 2223333466666777777777777777653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=118.33 Aligned_cols=198 Identities=11% Similarity=0.025 Sum_probs=118.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVYV 102 (243)
T ss_dssp ----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHHH
Confidence 33344444444555555555554444322 245556666666666667777766666666543 345666666666677
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHH
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 393 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 393 (499)
..|++++|...+.+.+... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777776655433 2344556666666777777777777777766653 345666777777777777777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 394 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
..++++...... +..++..+..+|...|++++|.+.++++.+..
T Consensus 180 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777655432 55677777777778888888888887777754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-12 Score=110.31 Aligned_cols=178 Identities=8% Similarity=-0.074 Sum_probs=105.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHc----c
Q 010853 244 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN----V 315 (499)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 315 (499)
.+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+. .+...+..+...|.. .
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcc
Confidence 444444444444444443 34455555555555 66666666666666553 245555556666665 6
Q ss_pred CCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----cC
Q 010853 316 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SN 387 (499)
Q Consensus 316 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 387 (499)
+++++|+..+.+..... +...+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCc
Confidence 66666666666654322 33444555555555 666777777777666653 34556666666666 67
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 010853 388 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 438 (499)
++++|...+++..+.+. ...+..+...|.. .+++++|.+.|++..+.|
T Consensus 201 ~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777777665432 4456666666666 677777777777776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=5.4e-13 Score=120.65 Aligned_cols=246 Identities=10% Similarity=0.062 Sum_probs=138.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC-HHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 010853 163 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD-LEKARKVLQFMLSKKDVDRTRICNIYLRAL 241 (499)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (499)
.|..+..++...|++++|++.+++.++... -+...|..+..++...|+ +++|+..+++++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al------------------ 159 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAII------------------ 159 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHH------------------
Confidence 455555555555666666666665555321 133445555555555554 555555555554
Q ss_pred hccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010853 242 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 321 (499)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 321 (499)
+..+. +...|..+..++...|++++|+..|+++.+.. +.+...|..+..++...|++++|
T Consensus 160 -----------------~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 160 -----------------EEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp -----------------HHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTH
T ss_pred -----------------HHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHH
Confidence 33322 44555555566666666666666666665543 44555666666666666666666
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHHh-cCCHHHH-----HHHHHHHhhCCCCcCHHhHHHHHHHHHhcC--ChhhHH
Q 010853 322 LNLLYQVMPQRGYSPGIVTYNAVLRGLFR-LRRVEEA-----KEVFNCMLGIGVVADSTTYAIVIDGLCESN--QLDEAK 393 (499)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~ 393 (499)
+..+.+++... +.+...|+.+..++.. .|..++| +..+++..+.. +-+...|..+..++...| ++++|.
T Consensus 220 l~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 220 LQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHH
Confidence 66666655443 2344555555555555 3443555 46666666543 345566777777777666 577777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHcCCCC-ChhhHHHHHHHHH
Q 010853 394 RFWDDIVWPSNIHDNYVYAAMIKGLCRSG---------KIHEAVHFLYEL-VDSGVTP-NIVCYNVVIDGAC 454 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~~-~~~~~~~-~~~~~~~l~~~~~ 454 (499)
+.+.++ +.. ..+...+..+..+|.+.| ..++|+++++++ .+. .| ....|..+...+.
T Consensus 297 ~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 297 NQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 777776 332 235566777777777653 247788888777 554 33 3344555544443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.7e-14 Score=128.86 Aligned_cols=277 Identities=13% Similarity=0.108 Sum_probs=139.7
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCC-
Q 010853 160 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS-----EHTYKVLVEGLCGESDLEKARKVLQFMLSK----KDVD- 229 (499)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 229 (499)
....+......+...|++++|...|++..+.. |+ ...+..+...+...|+++.|...+++.... +..+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44455666777777888888888888777643 32 245666677777777777777777765431 1111
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHH
Q 010853 230 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 308 (499)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 308 (499)
...++..+...+...|++++|...+.+..+.... ++. .....++..+
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------------~~~~~~~~~l 133 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--------------------------------VGEARALYNL 133 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------------------------------cchHHHHHHH
Confidence 1224444445555555555555555444432100 010 0012233444
Q ss_pred HHHHHccCC--------------------HHHHHHHHHHHhccC---CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 309 IFGLLNVGR--------------------IQEALNLLYQVMPQR---GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 364 (499)
Q Consensus 309 ~~~~~~~~~--------------------~~~a~~~~~~~~~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 364 (499)
...+...|+ +++|...+.+.+... +. +....++..+...+...|++++|...+++.
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444444444 444444444332210 00 111234445555555566666666666555
Q ss_pred hhC----CCC-cCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 365 LGI----GVV-ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN----IH-DNYVYAAMIKGLCRSGKIHEAVHFLYEL 434 (499)
Q Consensus 365 ~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 434 (499)
.+. +.. ....++..+..+|...|++++|...+++...... .+ ...++..+...|...|++++|.+.+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 432 100 0122455555666666666666666665542110 00 1334555666666666666666666665
Q ss_pred HHcCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 435 VDSGVT-PN----IVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 435 ~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
.+.... .+ ..++..+...|...|++++|.+.+++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 542100 01 3345556666666666666666666654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-13 Score=126.24 Aligned_cols=307 Identities=12% Similarity=0.061 Sum_probs=195.8
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCC-
Q 010853 124 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS----LVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GYLP- 194 (499)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 194 (499)
.....+......+...|++++|...|+...+.+.. + ...+..+...+...|++++|...+++.... +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455667788899999999999999999987432 3 356888899999999999999999987543 2112
Q ss_pred CcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-Cc----hhhHHHHHHHHhccCC-------------hHHHHHHHHH
Q 010853 195 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV-DR----TRICNIYLRALCLIKN-------------PTELLNVLVF 256 (499)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~-------------~~~a~~~~~~ 256 (499)
...++..+...+...|++++|...+++....... .+ ..++..+...+...|+ ++++...
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~--- 162 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA--- 162 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH---
Confidence 2456778888999999999999999987642100 00 1234444444444444 0000000
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 257 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG----KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
+++|...+++.... +.......++..+...+...|++++|...+.+.+...
T Consensus 163 -------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 163 -------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 44444444433221 1001123455666666777777777777766654332
Q ss_pred CCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 010853 333 GYSPG----IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----GVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 333 ~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
.-.++ ..++..+...+...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++.....
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 11111 235666777777888888888888776542 1111 14567778888888899999888888775321
Q ss_pred CC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCh
Q 010853 404 NI-----HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS----GVT-PNIVCYNVVIDGACKLSMK 459 (499)
Q Consensus 404 ~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 459 (499)
.. ....++..+..+|...|++++|.+.+++..+. +.. ....++..+...+...|+.
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 11 11446778888899999999999999887653 111 1234566677777777765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-13 Score=127.26 Aligned_cols=276 Identities=12% Similarity=0.070 Sum_probs=160.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCc-----ccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHH
Q 010853 163 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE-----HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 237 (499)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (499)
.+..+...+...|++++|...|+++.+.. |+. ..+..+...+...|++++|...+++......
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------- 117 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK---------- 117 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------
Confidence 44455666777778888888777777643 332 3566666777777777777777776643200
Q ss_pred HHHHhccCChHHHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCCCHHHHHHHHHHH
Q 010853 238 LRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK----FCAPDAVTFTTIIFGL 312 (499)
Q Consensus 238 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~ 312 (499)
..+ .......+..+...|...|++++|...+++..+.. .......++..+...|
T Consensus 118 ---------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 118 ---------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ---------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 000 01122334444445555555555555554443210 0011233445555555
Q ss_pred HccCC-----------------HHHHHHHHHHHhccC---CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-
Q 010853 313 LNVGR-----------------IQEALNLLYQVMPQR---GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV- 370 (499)
Q Consensus 313 ~~~~~-----------------~~~a~~~~~~~~~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~- 370 (499)
...|+ +++|...+.+.+... +. .....++..+...+...|++++|...+++..+....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 555555555433211 11 112235566666777777777777777776543100
Q ss_pred cC----HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--
Q 010853 371 AD----STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI-----HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-- 439 (499)
Q Consensus 371 ~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-- 439 (499)
.+ ..++..+..+|...|++++|...++++...... ....++..+...|...|++++|.+.+++..+...
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01 226677777788888888888888776532111 1134677788888888888888888888765311
Q ss_pred ---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 440 ---TPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 440 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.....++..+...|...|++++|.+.+++..+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11134677778888888888888888888765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=126.68 Aligned_cols=233 Identities=14% Similarity=0.027 Sum_probs=152.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHH
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVLPNS----LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS 100 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (499)
.+...|++++|+..|+++.+.+ +.+. .++..+...+...|++++|...+.+.++......+......++..+...
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 3378899999999999998864 2233 4688888999999999999999988887655543334455678888889
Q ss_pred HHcCCCHhHHHHHHHhccCCC-----CCCchhhHHHHHHHHHhcCC-----------------hhhHHHHHHHHHhc---
Q 010853 101 LCREGYVNEVFRIAEDMPQGK-----SVNEEFACGHMIDSLCRSGR-----------------NHGASRVVYVMRKR--- 155 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~~--- 155 (499)
+...|++++|...+++..+.. ......++..+...+...|+ +++|.+.+++..+.
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888765431 11234467777788888888 88888887775442
Q ss_pred -CCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC-CC----cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 010853 156 -GLTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL-PS----EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 228 (499)
Q Consensus 156 -g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (499)
+..+ ...++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++.......
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 1111 1236667777777888888888888776543111 01 125666667777777777777777665432100
Q ss_pred -----CchhhHHHHHHHHhccCChHHHHHHHHHHH
Q 010853 229 -----DRTRICNIYLRALCLIKNPTELLNVLVFML 258 (499)
Q Consensus 229 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (499)
....++..+...+...|++++|...+++..
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 296 LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 012234444444444555555554444443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-12 Score=104.65 Aligned_cols=171 Identities=10% Similarity=0.045 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 380 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 380 (499)
+...|..+...|...|++++|+..|++.++.. +-+...+..+..++...|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 44556666666666666666666666655443 2344556666666666666666666666665543 33455566666
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 460 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 460 (499)
..+...++++.+...+.+.....+. +...+..+..+|...|++++|++.|++..+.++. +..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 6666677777777777766654433 5556667777777777777777777777766432 5566777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCH
Q 010853 461 EAYQILREMRKNGLNPDA 478 (499)
Q Consensus 461 ~a~~~~~~m~~~g~~p~~ 478 (499)
+|++.|++..+ +.|+.
T Consensus 159 ~A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHHh--CCccC
Confidence 77777777766 34543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-11 Score=109.19 Aligned_cols=216 Identities=7% Similarity=-0.017 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHhhC-CCCCCCHHHHHHHHHHH
Q 010853 248 TELLNVLVFMLQTQCQPDVITLNTVINGFC-------KMGRI-------EEALKVLNDMVAG-KFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 312 (499)
++|...|++.....+ .+...|..++..+. +.|++ ++|..+|++..+. . +.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 455566666655432 25556666555554 34664 7777777777762 2 34556777777777
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCc-hh-hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHH-hcCCh
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPG-IV-TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC-ESNQL 389 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~ 389 (499)
...|++++|..+|++.+.. .|+ .. .|..+...+.+.|++++|..+|++..+.. +.+...|........ ..|++
T Consensus 110 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCH
Confidence 7777888888877776643 333 22 57777777777778888888888777754 334444443333322 25788
Q ss_pred hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHhcCChHHHHHHH
Q 010853 390 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTP--NIVCYNVVIDGACKLSMKREAYQIL 466 (499)
Q Consensus 390 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (499)
+.|..+|++..+..+. +...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888777655433 56677777777777888888888888877753 343 3456777777777778888888888
Q ss_pred HHHHH
Q 010853 467 REMRK 471 (499)
Q Consensus 467 ~~m~~ 471 (499)
+++.+
T Consensus 265 ~~a~~ 269 (308)
T 2ond_A 265 KRRFT 269 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-13 Score=121.57 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=170.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 010853 164 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS-----EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 238 (499)
Q Consensus 164 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 238 (499)
+......+...|++++|...|+++.+.. |+ ...+..+...+...|++++|...+++.....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------ 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------------
Confidence 4444555666677777777777666542 22 2345556666666666666666666554210
Q ss_pred HHHhccCChHHHHHHHHHHHhcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC----HHHHHHHHHHHH
Q 010853 239 RALCLIKNPTELLNVLVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD----AVTFTTIIFGLL 313 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 313 (499)
...+. +.....+..+...+...|++++|...+++..+.....++ ..++..+...+.
T Consensus 74 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 74 -------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp -------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 00000 112334555566666666666666666654432100111 335556666666
Q ss_pred ccCC--------------------HHHHHHHHHHHhccC---CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-
Q 010853 314 NVGR--------------------IQEALNLLYQVMPQR---GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG- 368 (499)
Q Consensus 314 ~~~~--------------------~~~a~~~~~~~~~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 368 (499)
..|+ +++|...+.+.+... +. ......+..+...+...|++++|...+++..+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6666 677766665543221 11 1123456677777888899999988888876431
Q ss_pred ---C-CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 010853 369 ---V-VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI-H----DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG- 438 (499)
Q Consensus 369 ---~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 438 (499)
. .....++..+...+...|++++|...+++....... . ...++..+...+...|++++|...+++..+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 0 111236778888889999999999999887532111 1 14467888889999999999999999887531
Q ss_pred ---C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 439 ---V-TPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 439 ---~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
- .....++..+...|...|++++|...++++.+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1 11134677888899999999999999999876
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-13 Score=120.75 Aligned_cols=276 Identities=14% Similarity=0.058 Sum_probs=168.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPN----SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
...+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+.+.++.............++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 445588999999999999998864 223 367788899999999999999999888776655433333466788888
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCC-----CCchhhHHHHHHHHHhcCC--------------------hhhHHHHHHHHH
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKS-----VNEEFACGHMIDSLCRSGR--------------------NHGASRVVYVMR 153 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~ 153 (499)
..+...|++++|...+++..+... .....++..+...+...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 889999999999888887653211 0113366677777888888 777777776654
Q ss_pred hc----CCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC-C----CcccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 154 KR----GLTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL-P----SEHTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 154 ~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
+. +..| ...++..+...+...|++++|.+.+++..+.... + ...++..+...+...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 1111 1235666666777777777777777665532100 0 11244555555566666666666665543
Q ss_pred hCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----C
Q 010853 224 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF----C 298 (499)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~ 298 (499)
.... ..+. .....++..+...+...|++++|...+++...... .
T Consensus 251 ~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 251 LLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHH-------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 2100 0000 00133445555566666666666666655543210 0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhc
Q 010853 299 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 330 (499)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 330 (499)
.....++..+...+...|++++|...+.+.+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 11133555566666666666666666666543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-10 Score=108.51 Aligned_cols=424 Identities=8% Similarity=0.018 Sum_probs=278.4
Q ss_pred ChhhHHHHH---HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC---HHHHHHHHHHHHHHhhhccCCccCH
Q 010853 18 PVASLTSAL---AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD---VERANVLMFKLWERMKEEEDLSVNN 91 (499)
Q Consensus 18 ~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (499)
+...|...+ .+.+.++.+..+|+++... .+.....|...+..-.+.++ ++.+..+|++.+...+ ..|+.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~----~~~sv 139 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL----GNNDL 139 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS----CCCCH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC----CCCCH
Confidence 556666666 5678999999999999986 35567788889998888888 9999887776654321 13677
Q ss_pred HhHHHHHHHHHcCCCH--------hHHHHHHHhccC-CCC-CC-chhhHHHHHHHHHh---------cCChhhHHHHHHH
Q 010853 92 AAFANLVDSLCREGYV--------NEVFRIAEDMPQ-GKS-VN-EEFACGHMIDSLCR---------SGRNHGASRVVYV 151 (499)
Q Consensus 92 ~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~~~ 151 (499)
..|..-+....+.++. +.+.++|+.... .|. .+ +...|...+..... .++++.+..+|+.
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 7777777665555443 334577776443 233 23 34577777765442 3456788999999
Q ss_pred HHhcCCCCChhhHHHHHHHHHc-------------cCChhHHHHHHHHHHhC--CCC---CC------------------
Q 010853 152 MRKRGLTPSLVSYNSIVHGLCK-------------HGGCMRAYQLLEEGIQF--GYL---PS------------------ 195 (499)
Q Consensus 152 ~~~~g~~p~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~~---~~------------------ 195 (499)
........-..+|......-.. ..+++.|...+.++... ++. |.
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 8864222112233222111111 11234445555443211 111 11
Q ss_pred --cccHHHHHHHHhcCC-------CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHH-HHHHHHHhcCCCCC
Q 010853 196 --EHTYKVLVEGLCGES-------DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL-NVLVFMLQTQCQPD 265 (499)
Q Consensus 196 --~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~ 265 (499)
...|...+..--..+ ..+.+..+|++.+. ..+....+|...+..+...|+.++|. .+++...... +.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~-~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ-HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCC
Confidence 022333443322222 13445677888875 34557778888888888899999996 9999988754 346
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--------CCC------------CHHHHHHHHHHHHccCCHHHHHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKF--------CAP------------DAVTFTTIIFGLLNVGRIQEALNLL 325 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~ 325 (499)
...|-..+....+.|+++.|.++|+.+..... ..| ....|...+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66677888888999999999999999875310 013 2346777788888889999999999
Q ss_pred HHHhcc-CCCCCchhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 010853 326 YQVMPQ-RGYSPGIVTYNAVLRGLFRL-RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 326 ~~~~~~-~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
.+++.. ....+ ..|......-.+. ++.+.|..+|+...+. .+.+...+...+......|+.+.|+.+|++.+...
T Consensus 458 ~~A~~~~~~~~~--~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 458 GKCRRLKKLVTP--DIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHTGGGSCT--HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHhcCCCCh--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 998755 22222 2333322222333 4589999999999886 35566777788888888999999999999998765
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 404 NIH--DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 404 ~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
..+ ....|..++..-.+.|+.+.+..+.+++.+.- |+......++.-|
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 422 44589999999999999999999999999874 4444444444333
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-12 Score=116.37 Aligned_cols=230 Identities=7% Similarity=-0.053 Sum_probs=143.1
Q ss_pred HHHhccCChHHHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----CHHHHHHH
Q 010853 239 RALCLIKNPTELLNVLVFMLQT----QCQP-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP-----DAVTFTTI 308 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l 308 (499)
..+...|++++|...+++..+. +-.+ ...++..+...|...|+++.|...+++..+.....+ ...++..+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3444455555555555555432 1111 234566666777777777777777766554211011 23466667
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CcCHHhHHHH
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSPG----IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----GV-VADSTTYAIV 379 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 379 (499)
...|...|++++|...+.+.+....-.++ ..++..+..++...|++++|...+++..+. +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 77777788888887777766533211111 235667777788888888888888877652 22 3345667778
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-hhhHHHHHH
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPS----NIHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPN-IVCYNVVID 451 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 451 (499)
..+|...|++++|...+++..... .......+..+...+...|+ +++|+.++++. +..|+ ...+..+..
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHH
Confidence 888888888888888887765321 11112235667777778888 66666666655 22222 346667788
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010853 452 GACKLSMKREAYQILREMRK 471 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~ 471 (499)
.|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88888898888888888754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-12 Score=101.51 Aligned_cols=167 Identities=10% Similarity=0.104 Sum_probs=131.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHH
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 344 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 344 (499)
+...|..+...|...|++++|++.|++..+.. +.+..++..+..++.+.|++++|...+.+..... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 56677888888888888888888888887764 5567778888888888888888888887765444 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 424 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (499)
...+...++++.+...+.+..+.. +.+...+..+..++...|++++|.+.++++.+..+. +..+|..+..+|.+.|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCH
Confidence 777788888888888888887764 456777888888888889999999888888766544 667888888888899999
Q ss_pred HHHHHHHHHHHHc
Q 010853 425 HEAVHFLYELVDS 437 (499)
Q Consensus 425 ~~a~~~~~~~~~~ 437 (499)
++|++.|++.++.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999888875
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-11 Score=113.79 Aligned_cols=233 Identities=9% Similarity=0.025 Sum_probs=154.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhC----CCCC-chhhHHHHHHHHhccCChHHHHHHHHHHHhcCC------CCCHhhHH
Q 010853 202 LVEGLCGESDLEKARKVLQFMLSK----KDVD-RTRICNIYLRALCLIKNPTELLNVLVFMLQTQC------QPDVITLN 270 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 270 (499)
....+...|++++|...+++.... +..+ ...++..+...+...|++++|...+.+..+... .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455566666666666666532 1111 123566666666667777776666666554211 11234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHhcc---CCC-CCchhhHH
Q 010853 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAP----DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ---RGY-SPGIVTYN 342 (499)
Q Consensus 271 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~ 342 (499)
.+..+|...|++++|...+++..+.....+ ...++..+...|...|++++|...+.+.+.. .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888888999999888887764311011 2346778888899999999999988887642 122 33356678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC----CCCcCHHhHHHHHHHHHhcCC---hhhHHHHHHHHhcCCCCCCHHHHHHHH
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGI----GVVADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMI 415 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li 415 (499)
.+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++.. ........+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence 8888899999999999999887653 112223345667788888888 777777777662 1122334677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 010853 416 KGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~ 436 (499)
..|...|++++|.+.+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=119.53 Aligned_cols=205 Identities=13% Similarity=0.005 Sum_probs=100.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC-----CC
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR-----GY 334 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~ 334 (499)
...+..+...|...|++++|...+++.... ...+.....+..+...+...|++++|...+.+.+... +.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 334455555555555555555555554432 1102234455555566666666666666665544321 11
Q ss_pred -CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC----
Q 010853 335 -SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI------G-VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP---- 402 (499)
Q Consensus 335 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 402 (499)
+.....+..+...+...|++++|..+++++.+. + .+....++..+..+|...|++++|...++++...
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 122344555566666666666666666665543 1 1122345566666666667777776666666531
Q ss_pred ---CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 403 ---SNIHD-------NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 403 ---~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
...+. ...+..+...+...+.+.++...++...... +.+..++..+..+|.+.|++++|.+.+++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00111 0112222222333344445555555554432 22445677777788888888888888877754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-12 Score=120.62 Aligned_cols=195 Identities=10% Similarity=-0.055 Sum_probs=110.0
Q ss_pred CHhhHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHH
Q 010853 265 DVITLNTVINGFCKMGRI-EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (499)
+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|.+.+.. .|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH---CKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCHHHHHH
Confidence 444445555555555555 55555555554432 333455555555555555555555555554432 233444555
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc--------CChhhHHHHHHHHhcCCCC-
Q 010853 344 VLRGLFRL---------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES--------NQLDEAKRFWDDIVWPSNI- 405 (499)
Q Consensus 344 ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~- 405 (499)
+...+... |++++|...+++..+.. +.+...+..+..+|... |++++|...|+++.+..+.
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 55555555 66666666666665543 33455566666666665 6666666666666554321
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 010853 406 -HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 466 (499)
Q Consensus 406 -~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (499)
.+...|..+..+|...|++++|.+.|++..+.... +...+..+..++...|++++|++.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 25556666666777777777777777766665422 4455666666666666666666544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.3e-11 Score=104.43 Aligned_cols=220 Identities=10% Similarity=-0.016 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHh-------ccCCh-------HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 010853 213 EKARKVLQFMLSKKDVDRTRICNIYLRALC-------LIKNP-------TELLNVLVFMLQTQCQPDVITLNTVINGFCK 278 (499)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (499)
++|..+|++.+.. .+.+...|..++..+. ..|+. ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4566666666542 3344555555555544 24664 7777777777763112355677888888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH-hcCCHHH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPDAV-TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF-RLRRVEE 356 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~ 356 (499)
.|++++|..+|+++.+.. +.+.. .|..++..+.+.|++++|..+|.+.+... +++...|........ ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888743 22333 77888888888888888888888876543 233334433332222 3689999
Q ss_pred HHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 357 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIH--DNYVYAAMIKGLCRSGKIHEAVHFLYE 433 (499)
Q Consensus 357 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 433 (499)
|..+|+...+.. +.+...+..++..+.+.|++++|..+|+++.... ..| ....|..++..+...|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887753 4467788888888889999999999999998753 233 456888888888899999999999999
Q ss_pred HHHcC
Q 010853 434 LVDSG 438 (499)
Q Consensus 434 ~~~~~ 438 (499)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-12 Score=118.03 Aligned_cols=213 Identities=9% Similarity=-0.006 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCh-HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010853 212 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP-TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 290 (499)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 290 (499)
++.+...++.... ..+.+...+..+...+...|++ ++|...+++..+.... +...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4445555555442 2334455666666666666666 6777666666665432 56677778888888888888888888
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhc--------CC
Q 010853 291 DMVAGKFCAPDAVTFTTIIFGLLNV---------GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL--------RR 353 (499)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~ 353 (499)
+..+. .|+...+..+...+... |++++|+..+.+.+... +.+...|..+..++... |+
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 87765 35567777777778777 88888888888876554 33466777777777777 88
Q ss_pred HHHHHHHHHHHhhCCCC---cCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010853 354 VEEAKEVFNCMLGIGVV---ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 430 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 430 (499)
+++|...|++..+.. + .+...+..+..+|...|++++|...|+++.+..+. +...+..+..++...|++++|++.
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888753 3 47778888888888889999998888888766543 566778888888888888888765
Q ss_pred HHH
Q 010853 431 LYE 433 (499)
Q Consensus 431 ~~~ 433 (499)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.7e-13 Score=117.21 Aligned_cols=248 Identities=14% Similarity=0.078 Sum_probs=130.6
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhC-------CCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhh
Q 010853 161 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQF-------GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 233 (499)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (499)
..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...+++.....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 345566666666777777777777666542 111233445555666666666666666666554310
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCCHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTT 307 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~ 307 (499)
........+.....+..+...|...|++++|...++++.+. +..+.....+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00000001112344555566666666666666666655442 110123445566
Q ss_pred HHHHHHccCCHHHHHHHHHHHhcc------CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCcC--
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQ------RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-------GVVAD-- 372 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-- 372 (499)
+...+...|++++|...+.+.+.. ...+....++..+...+...|++++|...++++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 666666777777777766665433 111222345666667777777777777777776642 11111
Q ss_pred -----HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 373 -----STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 373 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
...+..+...+...+.+.++...++...... .....++..+..+|...|++++|.+.|++..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1122223333444556666666776665432 225567888999999999999999999988764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=9.4e-11 Score=107.05 Aligned_cols=199 Identities=14% Similarity=-0.037 Sum_probs=133.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChh----hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH
Q 010853 26 LAITGEMDVAYKVFDEMRHCGVLPNSL----TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 101 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (499)
+...|++++|...+++........+.. +++.+...+...|++++|...+.+.+...+..+.......++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 378899999999999988754222222 4666778888999999999999888876665432222234566778888
Q ss_pred HcCCCHhHHHHHHHhccCC----CCC--C-chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC----ChhhHHHHHHH
Q 010853 102 CREGYVNEVFRIAEDMPQG----KSV--N-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP----SLVSYNSIVHG 170 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~ 170 (499)
...|++++|...+++.... +.. | ....+..+...+...|++++|...+++..+..... ...++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 8999999998888876532 111 2 23455667778888899999988888876653221 12356667777
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCc-ccHH-----HHHHHHhcCCCHHHHHHHHHHHHh
Q 010853 171 LCKHGGCMRAYQLLEEGIQFGYLPSE-HTYK-----VLVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
+...|++++|...+++.......++. ..+. ..+..+...|+++.|...+++...
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 88888888888888877643211211 1111 122335677777777777777653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-11 Score=108.65 Aligned_cols=229 Identities=10% Similarity=-0.036 Sum_probs=148.1
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCC-C----CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-----CCHHHHHHH
Q 010853 239 RALCLIKNPTELLNVLVFMLQTQCQ-P----DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA-----PDAVTFTTI 308 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l 308 (499)
..+...|++++|...+++..+.... + ...++..+...|...|+++.|...+++..+..... ....++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3444556666666666655543110 1 23456667777777888888877777665421101 124566777
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCC----chhhHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCcCHHhHHHH
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSP----GIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-----IGVVADSTTYAIV 379 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 379 (499)
...|...|++++|.+.+.+.+....-.+ ...++..+..++...|++++|...+++..+ .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 7788888888888888777654321111 134566777788888888888888888776 33 3336677888
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-hhhHHHHHH
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPS----NIHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPN-IVCYNVVID 451 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 451 (499)
..++.+.|++++|...+++..... .......+..+...+...++ +.+|+..+++ .+..|+ ...+..+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHH
Confidence 888888999999988888876422 12223345666666777777 6677776665 222222 235667788
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010853 452 GACKLSMKREAYQILREMRK 471 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~ 471 (499)
.|...|++++|...+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88889999999998888754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-10 Score=94.91 Aligned_cols=164 Identities=12% Similarity=0.039 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHH
Q 010853 303 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 382 (499)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (499)
..+..+...+...|++++|...+.+.+... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345555666666677777777666644322 2345556666666667777777777777766553 3456666667777
Q ss_pred HHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 010853 383 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 462 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 462 (499)
+...|++++|...++++....+ .+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777777765433 2556677777777777777888777777776642 2556777777777777888888
Q ss_pred HHHHHHHHH
Q 010853 463 YQILREMRK 471 (499)
Q Consensus 463 ~~~~~~m~~ 471 (499)
.+.++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-10 Score=102.09 Aligned_cols=273 Identities=10% Similarity=-0.039 Sum_probs=151.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCcc----cHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCc----hhhHH
Q 010853 165 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH----TYKVLVEGLCGESDLEKARKVLQFMLSKKD-VDR----TRICN 235 (499)
Q Consensus 165 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 235 (499)
......+...|++++|...+++........+.. ++..+...+...|+++.|...+++...... ..+ ...+.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667888888888888876643211111 345556667778888888888877654211 111 12344
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhc----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CC-CHHHH
Q 010853 236 IYLRALCLIKNPTELLNVLVFMLQT----QCQ--P-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC--AP-DAVTF 305 (499)
Q Consensus 236 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~-~~~~~ 305 (499)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... .+ ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5566666777777777777666543 111 1 2234455666667777777777777766543210 11 13445
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHH-----HHHHHHHhcCCHHHHHHHHHHHhhCCCCc---CHHhHH
Q 010853 306 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN-----AVLRGLFRLRRVEEAKEVFNCMLGIGVVA---DSTTYA 377 (499)
Q Consensus 306 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 377 (499)
..+...+...|++++|...+.+.............+. ..+..+...|++++|...++........+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 5666666777777777777766543211111111111 12233556677777777777665533211 122345
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWP----SNIHDN-YVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.+...+...|++++|...++..... +..++. .++..+..++...|+.++|...+++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5566666777777777776665421 111111 24455556666677777777777766653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.5e-10 Score=100.80 Aligned_cols=91 Identities=8% Similarity=-0.141 Sum_probs=52.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHccCChhHHHHHHHHHHhCCC-----CC-CcccHHH
Q 010853 133 IDSLCRSGRNHGASRVVYVMRKRGL-TPS----LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY-----LP-SEHTYKV 201 (499)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~ 201 (499)
...+...|++++|...|++..+... .++ ..++..+..+|...|+++.|...+.+..+... .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777655411 112 23556666677777777777777666543210 00 1234555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH
Q 010853 202 LVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
+...|...|++++|...+++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al 209 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAAL 209 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666666666666666654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-10 Score=94.43 Aligned_cols=167 Identities=12% Similarity=0.069 Sum_probs=132.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 345 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 345 (499)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 3456667777888888888888888877654 4567778888888888888888888888876543 34566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 425 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (499)
..+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++...... +...+..+...+...|+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHH
Confidence 88888899999999988887764 456778888888899999999999999888765433 5678888889999999999
Q ss_pred HHHHHHHHHHHcC
Q 010853 426 EAVHFLYELVDSG 438 (499)
Q Consensus 426 ~a~~~~~~~~~~~ 438 (499)
+|.+.++++.+..
T Consensus 162 ~A~~~~~~~~~~~ 174 (186)
T 3as5_A 162 EALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC
Confidence 9999998887653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.2e-11 Score=115.91 Aligned_cols=165 Identities=12% Similarity=0.031 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 380 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 380 (499)
+..+++.+...+.+.|++++|++.|++.++.. +-+...+..+..++.+.|++++|+..|++..+.. +-+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34556666666666666666666666655443 2234556666666666666666666666666543 33455666666
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 460 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 460 (499)
.+|...|++++|.+.|+++++..+. +...|+.+..+|...|++++|++.|++.++.... +...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 6666677777777777666654433 4556666777777777777777777776665422 4556666666777777777
Q ss_pred HHHHHHHHHH
Q 010853 461 EAYQILREMR 470 (499)
Q Consensus 461 ~a~~~~~~m~ 470 (499)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-10 Score=95.41 Aligned_cols=206 Identities=12% Similarity=0.035 Sum_probs=154.7
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHH
Q 010853 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (499)
.|+..+......+...|++++|...|++..+... .++...+..+..++...|++++|+..+.+.+... +.+...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHH
Confidence 4567888889999999999999999999987652 2777888889999999999999999999977544 335667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCH-------HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC---HHHHHH
Q 010853 344 VLRGLFRLRRVEEAKEVFNCMLGIGVVADS-------TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD---NYVYAA 413 (499)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ 413 (499)
+..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...++++.+. .|+ ...|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 8899999999999999999998864 3345 45777888889999999999999999765 343 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 485 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 485 (499)
+..+|...| ...++++...+ ..+...|.... ....+.+++|...+++..+ +.|+......++
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l 220 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 777776544 34455555543 22344444433 3345678999999999988 557654444333
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.28 E-value=7e-11 Score=103.16 Aligned_cols=229 Identities=13% Similarity=0.007 Sum_probs=155.5
Q ss_pred hccCChHHHHHHHHHHHhc-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCCHHHHHHH
Q 010853 242 CLIKNPTELLNVLVFMLQT-------QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTTI 308 (499)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 308 (499)
...|++++|...+++..+. ..+....++..+...|...|++++|...++++.+. ...+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467777777777666542 22334667888899999999999999999988754 2113346678889
Q ss_pred HHHHHccCCHHHHHHHHHHHhccC-----C-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CCcCHHh
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQR-----G-YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI------G-VVADSTT 375 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 375 (499)
...+...|++++|...+.+.+... . .+....++..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999876541 1 1334567888888899999999999999988764 1 1223567
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcC-------CCCC-CHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCC
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWP-------SNIH-DNYVYAAMIKGLCRSGKIH------EAVHFLYELVDSGVTP 441 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~ 441 (499)
+..+..+|...|++++|...++++... ...+ ....|..+...+...+... .+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888889999999999999999988642 1111 2223444444443333322 22222221111 1112
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 442 NIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
...++..+...|...|++++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345788889999999999999999998875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-10 Score=113.12 Aligned_cols=166 Identities=17% Similarity=0.098 Sum_probs=110.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHH
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 344 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 344 (499)
+...++.+..+|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++.++.. +-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 34566667777777777777777777766543 3456667777777777777777777777665443 2345566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 424 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (499)
..++...|++++|++.|++..+.. +-+...+..+..+|...|++++|...|+++.+..+. +...|..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 777777777777777777776653 345666777777777777777777777777655433 455677777777777777
Q ss_pred HHHHHHHHHHHH
Q 010853 425 HEAVHFLYELVD 436 (499)
Q Consensus 425 ~~a~~~~~~~~~ 436 (499)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776666553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.5e-10 Score=93.21 Aligned_cols=197 Identities=12% Similarity=-0.001 Sum_probs=122.8
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q 010853 231 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 310 (499)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (499)
+..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHHHH
Confidence 345555555666666666666666666655543455666667777777777777777777777654 445666777777
Q ss_pred HHHccCCHHHHHHHHHHHhccCCCCCch-----hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--CHHhHHHHHHHH
Q 010853 311 GLLNVGRIQEALNLLYQVMPQRGYSPGI-----VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA--DSTTYAIVIDGL 383 (499)
Q Consensus 311 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 383 (499)
.+...|++++|...+.+.+....-.+.. ..|..+...+...|++++|...|++..+.. +. +...+..+..+|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHH
Confidence 7777777777777777766544221111 346666667777888888888888887753 22 345666666666
Q ss_pred HhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 384 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
...| ..+++++...... +...|.... ....+.+++|...+++..+..
T Consensus 164 ~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 5443 3344444433222 333343333 233466788888888888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=101.67 Aligned_cols=230 Identities=14% Similarity=0.079 Sum_probs=160.6
Q ss_pred hcCCCHHHHHHHHHHHHh-------CCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc------CC-CCCHhhHHHH
Q 010853 207 CGESDLEKARKVLQFMLS-------KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT------QC-QPDVITLNTV 272 (499)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 272 (499)
...|+++.|..++++..+ ...+....++..+...+...|++++|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456777777777766654 222334568889999999999999999999988765 22 2245678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhcc------CCCCCchhh
Q 010853 273 INGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ------RGYSPGIVT 340 (499)
Q Consensus 273 ~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 340 (499)
..+|...|++++|...+++.... ...+....++..+...+...|++++|...+.+.+.. ...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 111234677888999999999999999999998754 112234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCc-CHHhHHHHHHHHHhcCChhhH------HHHHHHHhcCCCCC
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGI-------GVVA-DSTTYAIVIDGLCESNQLDEA------KRFWDDIVWPSNIH 406 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a------~~~~~~~~~~~~~~ 406 (499)
+..+...+...|++++|...+++..+. ...+ ....+..+...+...+....+ ...++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888899999999999999999998763 1122 222333333344333333332 222222211 1122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 407 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
...++..+..+|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3447888999999999999999999988753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-08 Score=87.81 Aligned_cols=185 Identities=9% Similarity=0.073 Sum_probs=111.2
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 285 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 364 (499)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 364 (499)
++..|++....+ .++..++..+..++...|++++|++++.+.+......-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 566666665543 344555556677777777777777777775433211234556667777777778888888888777
Q ss_pred hhCCCCc-----CHHhHHHHHHHH--HhcC--ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010853 365 LGIGVVA-----DSTTYAIVIDGL--CESN--QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 365 ~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
.+. .| +..+...|+.++ ...| ++..|..+|+++.... |+..+-..++.++...|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 664 34 244555555452 2223 7777777887775432 332222333346777788888887777655
Q ss_pred HcC-----C----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 010853 436 DSG-----V----TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 479 (499)
Q Consensus 436 ~~~-----~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 479 (499)
+.. . +-|..++..+|......|+ +|.++++++.+ ..|+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 431 0 2255566455555555665 67777777776 445543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.18 E-value=6e-08 Score=91.02 Aligned_cols=208 Identities=9% Similarity=-0.027 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010853 248 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 327 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 327 (499)
+.+..+|++++...+ .+...|...+..+.+.|+.+.|..+++..... +.+...+. .|....+.++..+.+.+
T Consensus 196 ~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~----~y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL----YYGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH----HHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH----HHHhhcchhHHHHHHHH
Confidence 456677777776543 35677777788888888899999999888875 22222222 12221111111111111
Q ss_pred HhccCC--------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh-cCChhhHHHHHHH
Q 010853 328 VMPQRG--------YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-SNQLDEAKRFWDD 398 (499)
Q Consensus 328 ~~~~~~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 398 (499)
...... .......|...+....+.++.+.|..+|+.. ... ..+...|...+..-.. .++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 110000 0111245666666666778899999999999 321 2344445433322222 3369999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 399 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 399 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..+..+. +...|...++.....|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++.+
T Consensus 346 al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8865432 44567778888888999999999999872 2567788888777778999999998888763
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-09 Score=94.86 Aligned_cols=165 Identities=10% Similarity=-0.093 Sum_probs=81.7
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCC---C--chhhHHHHH
Q 010853 59 RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV---N--EEFACGHMI 133 (499)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~ 133 (499)
..+...|++++|...+.+.++..+...+......+|+.+..+|.+.|++++|+..++...+.... + -..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556677777776666665544332111112345666666666666666666666554332110 0 123445555
Q ss_pred HHHHhc-CChhhHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcc------cHHH
Q 010853 134 DSLCRS-GRNHGASRVVYVMRKRGLTP-S----LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH------TYKV 201 (499)
Q Consensus 134 ~~~~~~-~~~~~A~~~~~~~~~~g~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ 201 (499)
.+|... |++++|...|++..+..... + ..++..+...+...|++++|...|++..+........ .|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 555554 66666666655554431100 0 2234555555555555555555555555432211111 2344
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH
Q 010853 202 LVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
+..++...|+++.|...+++..
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-10 Score=88.34 Aligned_cols=143 Identities=14% Similarity=0.028 Sum_probs=104.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010853 347 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 426 (499)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 426 (499)
.+...|++++|+..+....... +.+...+..+...|...|++++|.+.|+++++..+. +..+|..+..+|...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence 3445567788888887776642 223445666778888888888888888888766544 67788888888888888888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH-HHHHHHCCCCC-CHhHHHHHHHHhcccCCC
Q 010853 427 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI-LREMRKNGLNP-DAVTWRILDKLHGNRGND 494 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~ 494 (499)
|+..|++..+.++. +...|..+...|.+.|++++|.+. +++..+ +.| ++..|....+++.+.|+|
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGED 150 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCcC
Confidence 88888888887533 567788888888888888766654 577776 455 456677777777777765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-09 Score=94.66 Aligned_cols=198 Identities=13% Similarity=0.028 Sum_probs=145.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 24 SALAITGEMDVAYKVFDEMRHC----GVLPN-SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
.++...|++++|+..|++.... |.+++ ..+|+.+..++.+.|++++|...+.+.++..+..+.......+++.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3447899999999999988653 32222 568899999999999999999999999887665433222356788899
Q ss_pred HHHHcC-CCHhHHHHHHHhccCCCCCC-----chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh------hHHH
Q 010853 99 DSLCRE-GYVNEVFRIAEDMPQGKSVN-----EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV------SYNS 166 (499)
Q Consensus 99 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~------~~~~ 166 (499)
..+... |++++|+..|++..+..+.. ...++..+...+.+.|++++|...|++..+........ .|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 999996 99999999999876543211 13467888999999999999999999999875432221 4677
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCcc------cHHHHHHHHh--cCCCHHHHHHHHHHHH
Q 010853 167 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH------TYKVLVEGLC--GESDLEKARKVLQFML 223 (499)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~ 223 (499)
+..++...|++++|...|++..+. .|+.. .+..++..+. ..+++++|+..|+.+.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 888899999999999999998763 34321 2334555554 4566777777776654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-09 Score=87.94 Aligned_cols=138 Identities=11% Similarity=-0.034 Sum_probs=91.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
.+..++...|++++|...|++..+.. +.+...+..+..++...|++++|...|+++.+..+. +..+|..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Confidence 36677778888888888888887764 446777788888888888888888888888766544 5667777777776554
Q ss_pred C--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 010853 423 K--IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 486 (499)
Q Consensus 423 ~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 486 (499)
+ .+.+...++.... ..|....+.....++...|++++|...|++..+ +.|+......+.+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 3 3344555554431 222223344445556667888888888888876 5677666655554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-09 Score=80.68 Aligned_cols=128 Identities=10% Similarity=0.146 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++...... +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 4455666666777777777777766543 345566666777777777777777777777654332 45566777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 421 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7778888777777776542 2456677777777778888888887777765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.3e-09 Score=90.02 Aligned_cols=100 Identities=9% Similarity=0.008 Sum_probs=49.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-hhhH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD---AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTY 341 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 341 (499)
...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..++.+.|++++|+..|.+.+....-.|. ...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3344444555555555555655555555432 112 344555555555555666665555555443321111 2234
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHhhC
Q 010853 342 NAVLRGLFR--------LRRVEEAKEVFNCMLGI 367 (499)
Q Consensus 342 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~ 367 (499)
..+..++.. .|++++|...|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 444444444 55666666666655543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.8e-09 Score=89.32 Aligned_cols=177 Identities=9% Similarity=-0.026 Sum_probs=138.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CcCHHh
Q 010853 299 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV--VADSTT 375 (499)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 375 (499)
+.+...+-.+...+.+.|++++|+..|.+++....-.|. ...+..+..++...|++++|...|+...+... +.....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456777888888999999999999999998765522221 56777888899999999999999999988631 122456
Q ss_pred HHHHHHHHHh--------cCChhhHHHHHHHHhcCCCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 010853 376 YAIVIDGLCE--------SNQLDEAKRFWDDIVWPSNIHDNYVY-----------------AAMIKGLCRSGKIHEAVHF 430 (499)
Q Consensus 376 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~ 430 (499)
+..+..++.. .|++++|...|++++...+. +.... ..+...|...|++++|+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7778888888 99999999999999865443 22223 5568889999999999999
Q ss_pred HHHHHHcCCCC--ChhhHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCCH
Q 010853 431 LYELVDSGVTP--NIVCYNVVIDGACKL----------SMKREAYQILREMRKNGLNPDA 478 (499)
Q Consensus 431 ~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~ 478 (499)
|+++++..... ....+..+..+|... |++++|...++++.+ ..|+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 228 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDS 228 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCC
Confidence 99999874332 234677788888866 889999999999987 34654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=9.7e-09 Score=78.01 Aligned_cols=129 Identities=10% Similarity=0.180 Sum_probs=80.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHH
Q 010853 305 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 384 (499)
Q Consensus 305 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (499)
+..+...+...|++++|...+.++.... +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4445555566666666666666544332 2234455555666666666666666666666543 334556666667777
Q ss_pred hcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 385 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 385 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
..|++++|...++++....+. +...+..+...+...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777776654332 4556677777777777777777777777654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=6.4e-08 Score=83.00 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMVA 294 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 294 (499)
..+...+..+.+.|+.+.|.+.++.|.+
T Consensus 137 ea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 137 ELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444444444444444444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.9e-09 Score=84.76 Aligned_cols=131 Identities=6% Similarity=0.015 Sum_probs=89.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 387 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (499)
+..++.+.|++++|+..|.+.+... +.+...+..+..++...|++++|...|++..+.. +.+..++..+..+|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 7778888888888888888877554 3456677788888888888888888888888764 456777777777776554
Q ss_pred C--hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 010853 388 Q--LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 445 (499)
Q Consensus 388 ~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 445 (499)
+ .+.+...++.+.. ..|....+.....++...|++++|+..|++.++. .|+...
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 3 3445555555432 2333334444566667778889999999888775 455443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-09 Score=104.03 Aligned_cols=174 Identities=10% Similarity=-0.029 Sum_probs=125.9
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 010853 277 CKMGRIEEALKVLNDMV--------AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 348 (499)
Q Consensus 277 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 348 (499)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|+..+.+.+... +.+...|..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHH
Confidence 66788888888888877 332 4456677777888888888888888888876554 33556777777788
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
...|++++|...|++..+.. +.+...+..+..++...|++++ ...|+++.+.++. +...|..+..++...|++++|+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888887764 4466777788888888888888 8888888766544 5667888888888888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 010853 429 HFLYELVDSGVTPNIVCYNVVIDGACKLSM 458 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 458 (499)
+.|++..+.+.. +...+..+..++...++
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 888887765322 34566666666655444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.7e-09 Score=82.91 Aligned_cols=145 Identities=7% Similarity=-0.041 Sum_probs=91.2
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (499)
...+...|++++|+..+.+..... +.+...+..+...|...|++++|++.|++..+.. +-+..+|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 344455666777777776644322 2234455566677777777777777777777654 4466677777777777777
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF-LYELVDSGVTPNIVCYNVVIDGACKLSM 458 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 458 (499)
+++|...|+++.+..+. +..+|..+...|.+.|++++|.+. +++..+..+. ++..|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 77777777777665443 556777777777777777665544 4666665432 45556655555555553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-08 Score=81.98 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=74.7
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHH-HHhcC
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG-LCESN 387 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g 387 (499)
...+...|++++|...+.+.+... +.+...+..+..++...|++++|...++...+.. |+...+..+... +...+
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 334444444555544444433222 2223344444444444555555555554444332 122222111111 11111
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHH
Q 010853 388 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKLSMKREAYQIL 466 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (499)
....|...+++..+..+. +...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 222345555555543332 45556666666666666666666666666554332 2345666666666666666666666
Q ss_pred HHHH
Q 010853 467 REMR 470 (499)
Q Consensus 467 ~~m~ 470 (499)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-07 Score=87.05 Aligned_cols=347 Identities=7% Similarity=-0.081 Sum_probs=198.4
Q ss_pred ccCC-HHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCC
Q 010853 63 RTRD-VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 141 (499)
Q Consensus 63 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 141 (499)
+.|+ ...|+.+|..++...|. |+++.+..+|++....- |+...|...+....+.++
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------------~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~ 62 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------------KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQ 62 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------------TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC-
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------------CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCc
Confidence 3455 66667766666655542 88999999999988743 688888888887777663
Q ss_pred -hhhHHHHHHHHHhc-CCCC-ChhhHHHHHHHHH----ccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh---cCCC
Q 010853 142 -NHGASRVVYVMRKR-GLTP-SLVSYNSIVHGLC----KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC---GESD 211 (499)
Q Consensus 142 -~~~A~~~~~~~~~~-g~~p-~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~ 211 (499)
.+....+|+..... |..| +...|...+..+. .+++.+.+..+|+..+.. |.. .+..+-..|. ...+
T Consensus 63 ~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~ 138 (493)
T 2uy1_A 63 KKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELELN 138 (493)
T ss_dssp ---CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhc
Confidence 45677788876654 5333 5567777776654 245677888888888773 211 1122222221 1112
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-------CHHH
Q 010853 212 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-------RIEE 284 (499)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~ 284 (499)
...+..++.+.. +.+..|..++..+...-...+...|...+..-...+ ..+.
T Consensus 139 ~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~R 197 (493)
T 2uy1_A 139 KITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESR 197 (493)
T ss_dssp HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred cccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHH
Confidence 222333332211 122223333333222100113345555444432211 1345
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHH-HHHHHH
Q 010853 285 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA-KEVFNC 363 (499)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~ 363 (499)
+..+|+++.... +.+...|...+..+.+.|+.+.|..++.+.+.. +.+...+. .|......++. ..+.+.
T Consensus 198 v~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~----~y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 198 MHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL----YYGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH----HHHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH----HHHhhcchhHHHHHHHHH
Confidence 677888887754 556788888888888999999999999998865 33332222 22222111121 122221
Q ss_pred HhhCC-----C---CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 010853 364 MLGIG-----V---VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS-GKIHEAVHFLYEL 434 (499)
Q Consensus 364 ~~~~~-----~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~ 434 (499)
..... . .....+|...+....+.++.+.|..+|+.+ .. ...+..+|......-... ++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11000 0 112245666777777788899999999999 32 223445554333322233 3699999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 435 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
.+.... ++..+...+....+.|+.+.|..+|+++
T Consensus 347 l~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 347 LLKHPD-STLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 886422 4455666777778899999999888875
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-07 Score=80.04 Aligned_cols=225 Identities=8% Similarity=-0.071 Sum_probs=138.0
Q ss_pred HhcCC-hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC--CHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH--
Q 010853 27 AITGE-MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR--DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL-- 101 (499)
Q Consensus 27 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 101 (499)
.+.|. .++|+++++.++... +-+..+|+.-..++...+ ++++++..+..++..-|+ +..+|+.....+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk------~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK------NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT------CCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHHH
Confidence 44444 568999999999864 235566888888888888 999999998888876544 234454444444
Q ss_pred --HcC---CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChh--hHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 010853 102 --CRE---GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH--GASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 174 (499)
Q Consensus 102 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 174 (499)
... ++++++++.++.+.+.++ .+..+|+.-..++.+.|.++ ++++.++.+.+..+. |...|+.....+...
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 444 677888888888777665 55667777777777777777 788888888777554 666676655555555
Q ss_pred CC------hhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCH-HHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCh
Q 010853 175 GG------CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL-EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 247 (499)
Q Consensus 175 ~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 247 (499)
+. ++++++.+++++.... -|...|+.+-..+.+.|+. +.+..+..++...+
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~--------------------- 251 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE--------------------- 251 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG---------------------
T ss_pred cccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc---------------------
Confidence 44 5555555555554321 2344444444444444432 22333333332211
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010853 248 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 294 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 294 (499)
..-..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 252 ------------~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 252 ------------KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ------------GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 00122455566666666666666667766666654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=9.3e-09 Score=101.16 Aligned_cols=174 Identities=11% Similarity=0.006 Sum_probs=141.5
Q ss_pred hccCChHHHHHHHHHHH--------hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 242 CLIKNPTELLNVLVFML--------QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 242 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
...|++++|.+.+++.. +.. +.+...+..+..++...|++++|+..|+++.+.. +.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 77899999999999988 433 2356778888899999999999999999998765 567888999999999
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHH
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 393 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 393 (499)
..|++++|...|++.+... +.+...+..+..++...|++++ ...|++..+.. +.+...+..+..++...|++++|.
T Consensus 479 ~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999987665 3356678888889999999999 99999998865 557788999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 010853 394 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 423 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (499)
..|+++.+.++. +...+..+..++...++
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 999999765433 45577777777766554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=7e-08 Score=79.84 Aligned_cols=175 Identities=10% Similarity=-0.053 Sum_probs=96.2
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcC----CHHHHHHH
Q 010853 285 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR----RVEEAKEV 360 (499)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~ 360 (499)
|.+.|++..+. -+...+..+...|...+++++|+..|.+..... +...+..+...|.. + ++++|..+
T Consensus 5 A~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 5 PGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp TTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 34444444442 244445555555555555555555555544221 33344444444444 4 56666666
Q ss_pred HHHHhhCCCCcCHHhHHHHHHHHHh----cCChhhHHHHHHHHhcCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 010853 361 FNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNI-HDNYVYAAMIKGLCR----SGKIHEAVHFL 431 (499)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~ 431 (499)
|++..+.| +...+..|...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66665544 44455555555555 56666677766666554321 014456666666666 56677777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCC
Q 010853 432 YELVDSGVTPNIVCYNVVIDGACKL-S-----MKREAYQILREMRKNG 473 (499)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g 473 (499)
++..+. ..+...+..|...|... | ++++|...+++..+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777665 12334555555555542 2 6677777777776665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-07 Score=79.51 Aligned_cols=217 Identities=6% Similarity=0.016 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH----Hcc---CCH
Q 010853 248 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMG--RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL----LNV---GRI 318 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 318 (499)
++|+.....++...+. +...|+.--.++...| +++++++.++.+.... +.+..+|+.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3455555544444322 3334444444444444 5555555555555443 22333333222222 222 455
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC------hh
Q 010853 319 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE--EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ------LD 390 (499)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 390 (499)
++++..+.+++... +-+..+|+.-.-.+.+.|.++ ++++.++.+.+.. +-|...|+.-...+...+. ++
T Consensus 127 ~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 55555555554433 334444444444444555555 6666666665544 3355555544444444444 55
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE-AVHFLYELVDSG--VTPNIVCYNVVIDGACKLSMKREAYQILR 467 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 467 (499)
++.+.+++++...+. |...|+.+-..+.+.|+..+ +.++..++.+.+ -..+...+..+...|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 666666666555443 55566666555555555322 334444444322 11244556666666666666666666666
Q ss_pred HHHH
Q 010853 468 EMRK 471 (499)
Q Consensus 468 ~m~~ 471 (499)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.98 E-value=7.6e-08 Score=80.57 Aligned_cols=190 Identities=9% Similarity=-0.000 Sum_probs=119.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch-hhHH
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP-DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI-VTYN 342 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 342 (499)
+...+..+...+.+.|++++|...|+++.+.....+ ....+..+..++.+.|++++|+..|.+.+....-.+.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556667778889999999999999887532122 24567778888999999999999998877655332221 1333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 343 AVLRGLFR------------------LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 343 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
.+..++.. .|++++|...|+++.+.. +-+.......... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH-----
Confidence 34444433 345555555555555542 1111111111000 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010853 405 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN--IVCYNVVIDGACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 473 (499)
......+...|.+.|++++|+..|+++++..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00113456778899999999999999998743311 2467888899999999999999999988753
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5e-08 Score=84.98 Aligned_cols=165 Identities=14% Similarity=0.079 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHH-H
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI-V 379 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l 379 (499)
+...+..+...+...|++++|...|++.+... +.+...+..+...+...|++++|...++.+.... |+...... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 34444455555556666666666666555443 2234455555556666666666666666555432 33322221 1
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCC
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKLSM 458 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 458 (499)
...+...++.+.|...+++.....+. +...+..+...+...|++++|.+.|+++....... +...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 22244555556666666666554432 45566666666666666666666666666653321 14456666666666666
Q ss_pred hHHHHHHHHHHH
Q 010853 459 KREAYQILREMR 470 (499)
Q Consensus 459 ~~~a~~~~~~m~ 470 (499)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 666666665543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-08 Score=81.27 Aligned_cols=163 Identities=12% Similarity=0.003 Sum_probs=120.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 347 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 347 (499)
.+......+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..... |+...+......
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHH
Confidence 44566677888899999999998877654 4567788888888999999999999888765443 233222221111
Q ss_pred -HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHH
Q 010853 348 -LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIH 425 (499)
Q Consensus 348 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 425 (499)
+...+....|...+++..+.. +.+...+..+..++...|++++|...++++.+..+.+ +...+..+..++...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 122223345788888887754 4467888889999999999999999999998776543 3567888999999999999
Q ss_pred HHHHHHHHHHH
Q 010853 426 EAVHFLYELVD 436 (499)
Q Consensus 426 ~a~~~~~~~~~ 436 (499)
+|...|++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999887654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-08 Score=86.11 Aligned_cols=166 Identities=10% Similarity=-0.008 Sum_probs=125.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHH-H
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN-A 343 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~ 343 (499)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+.+.... .|+..... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence 45556677778888899999999998887765 556778888888889999999999988875543 34433222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcC
Q 010853 344 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSG 422 (499)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 422 (499)
....+...++.+.|...+++..+.. +.+...+..+...+...|++++|...++++.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2223556677788888888888765 5577888888899999999999999999988765442 2567888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 010853 423 KIHEAVHFLYELVD 436 (499)
Q Consensus 423 ~~~~a~~~~~~~~~ 436 (499)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 98888888877653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-07 Score=77.46 Aligned_cols=177 Identities=11% Similarity=-0.015 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccC----CHHHHHHH
Q 010853 249 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG----RIQEALNL 324 (499)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 324 (499)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.+ +...+..+...|.. + ++++|...
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3455555555553 56677777778888888888888888887743 56667777777777 6 78888888
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCC-cCHHhHHHHHHHHHh----cCChhhHHHH
Q 010853 325 LYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCE----SNQLDEAKRF 395 (499)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~ 395 (499)
|.+.... -+...+..+...|.. .+++++|..+|++..+.|.. .+...+..|...|.. .+++++|...
T Consensus 76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8886532 245566666666766 77888999999888887621 126677778888877 7789999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 010853 396 WDDIVWPSNIHDNYVYAAMIKGLCRS-G-----KIHEAVHFLYELVDSGV 439 (499)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~~ 439 (499)
|++..+.+ .+...+..|...|... | ++++|...|++..+.|.
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99887652 2444666777777643 3 88999999998888763
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-08 Score=95.61 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=120.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 358 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 358 (499)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.+... +.+...+..+..++...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999988764 5568889999999999999999999999977554 345678888889999999999999
Q ss_pred HHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 010853 359 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS---GKIHEAVHFLYELV 435 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~ 435 (499)
..+++..+.. +.+...+..+..+|...|++++|.+.++++.+.... +...+..+..++... |++++|.+.+++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999998865 456788899999999999999999999999876543 667888899999999 99999999999999
Q ss_pred HcCCCCChhhHHHH
Q 010853 436 DSGVTPNIVCYNVV 449 (499)
Q Consensus 436 ~~~~~~~~~~~~~l 449 (499)
+.+.. +...|..+
T Consensus 156 ~~~p~-~~~~~~~l 168 (568)
T 2vsy_A 156 AQGVG-AVEPFAFL 168 (568)
T ss_dssp HHTCC-CSCHHHHT
T ss_pred hcCCc-ccChHHHh
Confidence 87543 33444433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-07 Score=78.29 Aligned_cols=188 Identities=8% Similarity=-0.069 Sum_probs=130.9
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCH-HHHHH
Q 010853 231 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD--VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA-VTFTT 307 (499)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ 307 (499)
...+......+...|++++|...|+.+.+..+... ...+..+..++.+.|++++|+..|+++.+.....+.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44566677888999999999999999998654321 3567788999999999999999999998754212221 24555
Q ss_pred HHHHHHc------------------cCCHHHHHHHHHHHhccCCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 308 IIFGLLN------------------VGRIQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 308 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
+..++.. .|++++|...|.+.+... |+. ..+..... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHH----------HHHHHHHHH---
Confidence 5555553 578999999999977554 332 22221111 001111110
Q ss_pred CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010853 369 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 439 (499)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 439 (499)
.....+...|.+.|++++|...|+++++..+... ...+..+..+|.+.|++++|.+.++.+...++
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 1123456778899999999999999986544321 24688889999999999999999999887643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.4e-08 Score=95.45 Aligned_cols=156 Identities=13% Similarity=-0.053 Sum_probs=119.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 010853 244 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 323 (499)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 323 (499)
.|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999998876533 67888999999999999999999999999865 5678899999999999999999999
Q ss_pred HHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc---CChhhHHHHHHHHh
Q 010853 324 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES---NQLDEAKRFWDDIV 400 (499)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 400 (499)
.+++.+... +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++..
T Consensus 79 ~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999987654 4456788889999999999999999999998865 45678889999999999 99999999999998
Q ss_pred cCCCC
Q 010853 401 WPSNI 405 (499)
Q Consensus 401 ~~~~~ 405 (499)
+.+..
T Consensus 156 ~~~p~ 160 (568)
T 2vsy_A 156 AQGVG 160 (568)
T ss_dssp HHTCC
T ss_pred hcCCc
Confidence 76554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-08 Score=88.29 Aligned_cols=159 Identities=11% Similarity=-0.042 Sum_probs=73.3
Q ss_pred cCChHHHHHHHHHHHhCCC------CCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 29 TGEMDVAYKVFDEMRHCGV------LPNS----LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~~------~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
.|++++|.+++++..+... .++. ..|...+..+...|++++|...+.+.++..+.......-..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677788888887765210 1111 13444445555566666666655555544333211111233455555
Q ss_pred HHHHcCCCHhHHHHHHHhccCC----CCC-CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-C----hhhHHHHH
Q 010853 99 DSLCREGYVNEVFRIAEDMPQG----KSV-NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP-S----LVSYNSIV 168 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~----~~~~~~l~ 168 (499)
..|.+.|++++|+..|++..+. +-. .-..++..+..+|.. |++++|+..|++..+..... + ..++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 5555555555555555543221 110 012334444444544 55555555555443321000 0 22344444
Q ss_pred HHHHccCChhHHHHHHHHHH
Q 010853 169 HGLCKHGGCMRAYQLLEEGI 188 (499)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~ 188 (499)
.++...|++++|+..|++..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-07 Score=81.89 Aligned_cols=164 Identities=14% Similarity=0.083 Sum_probs=114.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccCCCCCchh----hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cC----HHhHHH
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV----TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV-AD----STTYAI 378 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 378 (499)
.+..+...|++++|...+.+........|+.. .+..+...+...+++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888877665443334422 2334555566677888888888888763222 22 236788
Q ss_pred HHHHHHhcCChhhHHHHHHHHhc----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHH
Q 010853 379 VIDGLCESNQLDEAKRFWDDIVW----P-SNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS----GVTPN-IVCYN 447 (499)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 447 (499)
+..+|...|++++|...++++.+ . +..+ ...++..+..+|...|++++|.+.+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888889999999988888762 1 1111 2237788889999999999999999887753 22222 56788
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHH
Q 010853 448 VVIDGACKLSM-KREAYQILREMRK 471 (499)
Q Consensus 448 ~l~~~~~~~g~-~~~a~~~~~~m~~ 471 (499)
.+..+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88889999995 6999999988753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.6e-07 Score=78.26 Aligned_cols=166 Identities=11% Similarity=-0.004 Sum_probs=122.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc----hhhHH
Q 010853 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDA----VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----IVTYN 342 (499)
Q Consensus 271 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 342 (499)
..+..+...|++++|..++++..+.....|+. ..+..+...+...+++++|+..+.+.+....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888999999999999988754323332 23345666777888999999999988753322233 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh----C-CCCc-CHHhHHHHHHHHHhcCChhhHHHHHHHHhc----CCCCC-CHHHH
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLG----I-GVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVW----PSNIH-DNYVY 411 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~ 411 (499)
.+..+|...|++++|...|+++.+ . +..+ ...++..+..+|...|++++|...+++..+ .+..+ -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888899999999999999998874 1 1122 234788899999999999999999988763 22222 25688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 010853 412 AAMIKGLCRSGK-IHEAVHFLYELVD 436 (499)
Q Consensus 412 ~~li~~~~~~g~-~~~a~~~~~~~~~ 436 (499)
..+..+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999994 6999999988764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.8e-08 Score=86.81 Aligned_cols=95 Identities=9% Similarity=-0.033 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-CHHhHHHHHHHHHhcCChhhHHHHHHHHhcC----CCCCC-HH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGI----GVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----SNIHD-NY 409 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~ 409 (499)
++..+...|.. |++++|+..|++..+. +... ...++..+...|...|++++|...+++.... +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 34444444544 6666666665555432 1000 1245556666666677777777666666432 11111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
.+..+..++...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45555556666677777777777766
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-07 Score=75.44 Aligned_cols=130 Identities=11% Similarity=-0.041 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHH
Q 010853 303 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 382 (499)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (499)
..+..+...+...|++++|...+.+.+ .|+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 345556667777888888888777643 4566777777777888888888888888877654 4466777777788
Q ss_pred HHhcCChhhHHHHHHHHhcCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 383 LCESNQLDEAKRFWDDIVWPSNIHD---------------NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+...|++++|...++++.+...... ...+..+..+|...|++++|.+.|++..+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887776543211 1566777777788888888888888777654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.5e-07 Score=77.57 Aligned_cols=168 Identities=13% Similarity=0.068 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch----hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CcC--H
Q 010853 303 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI----VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV---VAD--S 373 (499)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 373 (499)
..+...+..+...|++++|.+.+.+.+......++. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344445666777778888877777655433222211 1233345556677888888888888765321 111 4
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHh---cCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-C
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNI-H--DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG----VTP-N 442 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~-~ 442 (499)
.+++.+...|...|++++|...++++. +.... + ...++..+..+|...|++++|.+.+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 477888888888999999999888876 22111 1 12578888889999999999999998877532 111 1
Q ss_pred hhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 010853 443 IVCYNVVIDGACKLSMKREA-YQILREMR 470 (499)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 470 (499)
..+|..+..+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45778888889999999999 77677764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.8e-07 Score=74.92 Aligned_cols=130 Identities=10% Similarity=-0.058 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHH
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 346 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 346 (499)
..+..+...+...|++++|...|++.. .|+...+..+...+...|++++|+..+.+.+... +.+...+..+..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHH
Confidence 344556667777888888888887663 5677778888888888888888888887766543 345566777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCH----------------HhHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 347 GLFRLRRVEEAKEVFNCMLGIGVVADS----------------TTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
++...|++++|...|+...+.. +.+. ..+..+..++...|++++|...++.+.+..+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 7888888888888888877653 2222 5677777778888888888888888776543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-08 Score=77.38 Aligned_cols=104 Identities=8% Similarity=-0.035 Sum_probs=77.0
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
+...+..+...+...|++++|...|+++....+. +...|..+..+|...|++++|++.|++..+..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 3446666777777888888888888888766543 6667778888888888888888888888776533 5667777788
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 010853 452 GACKLSMKREAYQILREMRKNGLNPDAV 479 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 479 (499)
+|...|++++|...|++..+ +.|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 88888888888888888776 345543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-07 Score=69.09 Aligned_cols=99 Identities=10% Similarity=0.044 Sum_probs=63.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 454 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (499)
.+......|.+.|++++|...|++.++..+. +..+|..+..+|...|++++|++.+++.++.+.. +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 4555566666667777777777666654433 5556666667777777777777777776665422 4556666666777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC
Q 010853 455 KLSMKREAYQILREMRKNGLNPD 477 (499)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~p~ 477 (499)
..|++++|++.|++..+ +.|+
T Consensus 93 ~~~~~~~A~~~~~~al~--l~P~ 113 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ--VDPS 113 (126)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTT
T ss_pred HCCCHHHHHHHHHHHHH--HCcC
Confidence 77777777777777666 4454
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-07 Score=78.38 Aligned_cols=195 Identities=10% Similarity=-0.053 Sum_probs=127.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHH-------HHHHhccCCHHHHHHHHHHHHHHhhhccCCccC---------
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVL-------VRGVLRTRDVERANVLMFKLWERMKEEEDLSVN--------- 90 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 90 (499)
...++...|++.|.++.+.. +-....|..+ ...+.+.++..++...+...++.-+..-+...+
T Consensus 17 ~~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 17 MLPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred ccCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 36899999999999999864 3356677777 455555555555544333332211111111111
Q ss_pred ------HHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--hh
Q 010853 91 ------NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS--LV 162 (499)
Q Consensus 91 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~ 162 (499)
..........+...|++++|.++|+.+...++ +......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 22334466778888999999999998887663 32255556667888899999999887554431 111 23
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--cccHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 010853 163 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS--EHTYKVLVEGLCGESDLEKARKVLQFMLSK 225 (499)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 225 (499)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 567778888888888888888888764332243 234555666777888888888888888754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-07 Score=78.29 Aligned_cols=161 Identities=9% Similarity=-0.080 Sum_probs=103.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
...|++++|.+.++.+... ......++..+...+...|++++|...+.+.+......+.......++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578999999966655442 223567788889999999999999999888887665543333345677778888888888
Q ss_pred HhHHHHHHHhccCC----CCCC--chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHccC
Q 010853 107 VNEVFRIAEDMPQG----KSVN--EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT-PS----LVSYNSIVHGLCKHG 175 (499)
Q Consensus 107 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~~ 175 (499)
+++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+.... .+ ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888877765432 1011 2344566667777777777777777766542100 11 123455666666667
Q ss_pred ChhHHHHHHHHHH
Q 010853 176 GCMRAYQLLEEGI 188 (499)
Q Consensus 176 ~~~~a~~~~~~~~ 188 (499)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777666666544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=6.2e-08 Score=74.85 Aligned_cols=97 Identities=9% Similarity=-0.058 Sum_probs=51.2
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 010853 373 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 452 (499)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (499)
...+..+...+...|++++|...|+.+....+. +...|..+..+|...|++++|+..|++....+.. +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 334444555555555555555555555443322 4445555555555555555555555555554322 34455555555
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 010853 453 ACKLSMKREAYQILREMRK 471 (499)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~ 471 (499)
|...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.74 E-value=4.5e-07 Score=71.57 Aligned_cols=129 Identities=10% Similarity=-0.043 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
..+..+...+...|++++|...|+...+.. +.+..++..+..++...|++++|...+++.....+. +...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345566666777788888888888777654 446677777788888888888888888887765433 566778888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHH--HHHHHhcCChHHHHHHHHHHH
Q 010853 419 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVV--IDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~ 470 (499)
...|++++|.+.++++.+.... +...+..+ +..+...|++++|++.++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888876432 44444333 333667788888888887664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-06 Score=74.44 Aligned_cols=170 Identities=11% Similarity=-0.015 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc----h
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA----VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----I 338 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 338 (499)
..+...+..+...|++++|.+.+.+..+.....++. ..+..+...+...|++++|+..+.+.+.......+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 345556777888999999999988877654211111 22344556677888999999998887643221112 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhh---C-CCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC----CCC-C
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLG---I-GVVA--DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS----NIH-D 407 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~ 407 (499)
.+++.+...|...|++++|...+++..+ . +..+ ...++..+..+|...|++++|...+++..... ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788888889999999999999998862 1 1111 12578888999999999999999998876321 111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 010853 408 NYVYAAMIKGLCRSGKIHEA-VHFLYELVD 436 (499)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 436 (499)
..+|..+..+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788899999999999999 777877653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=7.3e-06 Score=71.85 Aligned_cols=231 Identities=7% Similarity=0.059 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHcc-C-CHHHHHH
Q 010853 247 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV-G-RIQEALN 323 (499)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~ 323 (499)
.++|+++++.++...+. +..+|+.--..+...| .+++++..++.+.... +.+..+|+.-...+.+. + +++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34555555555555433 4444555445555555 3666666666666554 44555555554444444 4 5566666
Q ss_pred HHHHHhccCCCCCchhhHHHHHHHHHhcCCHH--------HHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC-------
Q 010853 324 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE--------EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ------- 388 (499)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 388 (499)
.+.+++... +.+...|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-...+.+.+.
T Consensus 147 ~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 666655433 233444443333333333333 6666777666654 4466666666666666554
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCCh
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI--------------------HEAVHFLYELVDSG-----VTPNI 443 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~~ 443 (499)
++++.+.+++++...+. |...|+-+-..+.+.|+. ....++..++...+ -.++.
T Consensus 224 ~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 46666666666655444 666666655555555442 22333333332221 02456
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHH
Q 010853 444 VCYNVVIDGACKLSMKREAYQILREMRKNGLNP-DAVTWRILD 485 (499)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~ 485 (499)
..+..++..|...|+.++|.++++.+.+. ..| ...-|+-..
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~~ 344 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFRR 344 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHHH
Confidence 67777778888888888888888887643 333 334444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=7.6e-06 Score=71.71 Aligned_cols=174 Identities=7% Similarity=-0.113 Sum_probs=125.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcC-
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR-DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE- 104 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 104 (499)
.+.+..++|+++++.++... +-+..+|+.-..++...+ +++++...+..++..-++ +..+|+.....+.+.
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK------ny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK------SYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHC
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhc
Confidence 55566678999999999864 335667888888888888 599999988888765443 566777777777666
Q ss_pred C-CHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChh--------hHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 105 G-YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH--------GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 105 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
+ +++++++.++.+.+.++ .+..+|+.-..++.+.|.++ ++++.++++.+..+. |...|+.....+.+.+
T Consensus 138 ~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred CCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 6 88999999999998776 56778877666666666666 888899988887655 7778888777777766
Q ss_pred C-------hhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 010853 176 G-------CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210 (499)
Q Consensus 176 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (499)
. ++++++.+++.+.... -|...|+.+-..+.+.|
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 5 5677777777766431 24455554444444333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.3e-07 Score=67.79 Aligned_cols=108 Identities=11% Similarity=-0.032 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
..+......+.+.|++++|+..|++..+.. +.+..+|..+..+|...|++++|...++++++.++. +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 345566677778888888888888877764 456777777888888888888888888888765543 566788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010853 419 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 449 (499)
...|++++|++.|++.++..+. +...+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 8888888888888888876432 34444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-07 Score=75.10 Aligned_cols=120 Identities=8% Similarity=0.062 Sum_probs=53.2
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHH-HHhcCCh--h
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG-LCESNQL--D 390 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 390 (499)
..|++++|...+.+.+... +.+...+..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3444455555554444332 2233444444445555555555555555544432 2234444444444 4444554 5
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
+|...++++....+. +...+..+..+|...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 555555554433222 3344444445555555555555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.3e-07 Score=67.26 Aligned_cols=96 Identities=8% Similarity=0.005 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
..+..+...+...|++++|...++++...... +...+..+..++...|++++|.+.+++..+... .+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence 34444444444444555555444444433221 334444444455555555555555555444321 1334444444455
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010853 454 CKLSMKREAYQILREMRK 471 (499)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~ 471 (499)
...|++++|.+.+++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=9.5e-07 Score=65.64 Aligned_cols=95 Identities=11% Similarity=0.151 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 454 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (499)
.+..+...+...|++++|...++++..... .+..++..+...+...|++++|...++++.+... .+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence 334444444444444444444444443221 1333444444455555555555555555444321 13344444445555
Q ss_pred hcCChHHHHHHHHHHHH
Q 010853 455 KLSMKREAYQILREMRK 471 (499)
Q Consensus 455 ~~g~~~~a~~~~~~m~~ 471 (499)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=5.8e-07 Score=67.49 Aligned_cols=115 Identities=12% Similarity=0.073 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.....+. +...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 33344444444455555555554444332 223344444444444444555544444444433221 2334444444444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 420 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 420 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
..|++++|...+++..+.... +...+..+..++...|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 445555555554444443211 3333444444444333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.67 E-value=9.7e-07 Score=69.61 Aligned_cols=129 Identities=9% Similarity=-0.006 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHH
Q 010853 303 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 382 (499)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (499)
..+..+...+...|++++|...+.+.+... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344555566666677777777666655433 2345556666666777777777777777776653 3456667777777
Q ss_pred HHhcCChhhHHHHHHHHhcCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 010853 383 LCESNQLDEAKRFWDDIVWPSNIHDNYVYA--AMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
+...|++++|...++++....+. +...+. ..+..+...|++++|++.+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77778888888887777655433 333443 33333666778888888777654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.3e-07 Score=66.92 Aligned_cols=120 Identities=8% Similarity=-0.071 Sum_probs=100.3
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHH
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 414 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 414 (499)
+.+...+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...++++.+.... +...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 4456778888899999999999999999998875 457888999999999999999999999999876543 67789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 415 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 415 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
..++...|++++|.+.|++..+.... +...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 99999999999999999999887432 4556666766666555
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-07 Score=78.48 Aligned_cols=198 Identities=9% Similarity=-0.081 Sum_probs=131.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCHHHHHHH-------HHHHHccCCHHHHHHHHHHHhccCCCCCch------------
Q 010853 278 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTI-------IFGLLNVGRIQEALNLLYQVMPQRGYSPGI------------ 338 (499)
Q Consensus 278 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------ 338 (499)
..++...|.+.|.++.... +.....|..+ ...+...++..+++..+.+.+ ++.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhhhhhccCCccc
Confidence 4677788888888777654 3445556555 334444334444444443322 222211
Q ss_pred ----------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC-
Q 010853 339 ----------VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD- 407 (499)
Q Consensus 339 ----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 407 (499)
.........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 122345566778899999999998888754 443355666668889999999999998665432 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 408 -NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN--IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 408 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
...+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++.. ..|+...+..|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHHH
Confidence 23677788899999999999999998875433243 33566667788899999999999999987 45665555554
Q ss_pred H
Q 010853 485 D 485 (499)
Q Consensus 485 ~ 485 (499)
.
T Consensus 248 ~ 248 (282)
T 4f3v_A 248 K 248 (282)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.7e-07 Score=74.89 Aligned_cols=120 Identities=13% Similarity=-0.022 Sum_probs=50.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC---CCC-CchhhHHHHHHHHHhcCC
Q 010853 278 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR---GYS-PGIVTYNAVLRGLFRLRR 353 (499)
Q Consensus 278 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~ll~~~~~~~~ 353 (499)
..|++++|.+.++.+.... ......+..+...+...|++++|...+.+.+... +.. ....++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3455555555333332211 2234455555555555555555555555443211 011 112334444444555555
Q ss_pred HHHHHHHHHHHhhC----CCC--cCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 010853 354 VEEAKEVFNCMLGI----GVV--ADSTTYAIVIDGLCESNQLDEAKRFWDDI 399 (499)
Q Consensus 354 ~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 399 (499)
+++|...+++..+. +-. ....++..+...+...|++++|...+++.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55555555544331 100 01223344444444555555555554444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-06 Score=64.73 Aligned_cols=116 Identities=10% Similarity=0.158 Sum_probs=96.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 417 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 417 (499)
...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++....+. +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 5677888889999999999999999998764 457788899999999999999999999999866433 67788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 010853 418 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 456 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (499)
+...|++++|...++++.+.... +...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhc
Confidence 99999999999999999987532 455566555555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-07 Score=70.78 Aligned_cols=95 Identities=8% Similarity=-0.010 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...++++....+. +...+..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3334444555555555555555555433 334444555555555555555555555555443322 33344445555555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 010853 421 SGKIHEAVHFLYELVDS 437 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~ 437 (499)
.|++++|.+.|++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.4e-07 Score=66.63 Aligned_cols=107 Identities=12% Similarity=0.035 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----hhhHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT--PN----IVCYNV 448 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 448 (499)
.+..+...+.+.|++++|...|+++++..+. +...|..+..+|...|++++|++.+++.++.+.. ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4555666667777777777777776655433 5556667777777777777777777776653211 11 124556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 449 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
+..++...|++++|++.|++..+ ..||+.....|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 66667777777777777777765 34565555444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=8.2e-07 Score=76.99 Aligned_cols=192 Identities=9% Similarity=-0.029 Sum_probs=114.5
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 010853 232 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 311 (499)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (499)
..+..+...+...|++++|...++...+..+. +...|..+..+|.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34555566666677777777777766665432 66777788888888888888888888887654 5567778888888
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChh
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (499)
+...|++++|...|.+.+... |+. ..+...+....+ ...+... ........+.+......+... ..|+++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 888888888888887766432 211 111111111111 1111111 122222334454444444332 257888
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS-GKIHEAVHFLYELVD 436 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~ 436 (499)
+|.+.++...+..+. +......+...+.+. +.+++|.++|.++.+
T Consensus 153 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888877654321 333334444444444 567788888887654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-06 Score=65.62 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=59.2
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
..+..+...+...|++++|...|++..+..+. +...|..+..++...|++++|+..+++..+.+.. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34455555666666666666666666554332 4556666666666666666666666666665422 455666666666
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010853 454 CKLSMKREAYQILREMRK 471 (499)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~ 471 (499)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666666654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-07 Score=78.75 Aligned_cols=194 Identities=9% Similarity=0.030 Sum_probs=130.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHH
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 344 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 344 (499)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|...+.+.+... +.+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 45677788889999999999999999998764 4578899999999999999999999999977543 4456778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 424 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (499)
..++...|++++|...|+...+.. +.+...+...+....+.. .+.. +..........+......+... ..|++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 899999999999999999987642 111111111222211111 1111 1112222333344444444332 26889
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 010853 425 HEAVHFLYELVDSGVTPNI-VCYNVVIDGACKL-SMKREAYQILREMRK 471 (499)
Q Consensus 425 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 471 (499)
++|++.+++..+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999988887765 4443 3333343334444 667889999987754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.7e-07 Score=69.76 Aligned_cols=99 Identities=10% Similarity=-0.022 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 417 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 417 (499)
...+..+...+.+.|++++|...|+.+.+.. +.+...|..+..+|...|++++|...|+++....+. +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 4456667777788888888888888888765 456777888888888888888888888888766544 56677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 010853 418 LCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~ 438 (499)
|...|++++|...|++..+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888888764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.1e-07 Score=72.77 Aligned_cols=119 Identities=8% Similarity=0.077 Sum_probs=70.4
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG-LCRSGKI--HE 426 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 426 (499)
..|++++|...++...+.. +.+...+..+..+|...|++++|...++++....+. +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 4456666666666665543 345566666666666667777777766666544332 44555566666 5566666 66
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 427 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
|...++++.+.+.. +...+..+...|...|++++|...++++.+
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77666666665422 445566666666666777777777666665
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=6.4e-07 Score=69.07 Aligned_cols=100 Identities=14% Similarity=0.020 Sum_probs=80.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
+...+..+...+...|++++|...|+...... +.+...+..+..+|...|++++|...++++....+. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 44556667777888899999999998888764 557778888888888999999999999888766543 5667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 010853 417 GLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 417 ~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+|...|++++|.+.|++..+..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8999999999999998888753
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-06 Score=77.43 Aligned_cols=94 Identities=4% Similarity=-0.114 Sum_probs=60.2
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
.++..+..+|.+.|++++|...+++++...+. +...|..+..+|...|++++|+..|++..+.... +...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 55666666677777777777777776655433 5556666777777777777777777777665422 455666666666
Q ss_pred HhcCChHHH-HHHHHHH
Q 010853 454 CKLSMKREA-YQILREM 469 (499)
Q Consensus 454 ~~~g~~~~a-~~~~~~m 469 (499)
...|+.++| ..+++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 667776666 3344444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-06 Score=63.92 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 347 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 347 (499)
.+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|...+.+.+... +.+...+..+...
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHH
Confidence 33444444444445555544444444322 2234444444444444444444444444433221 1123333334444
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 010853 348 LFRLRRVEEAKEVFNCMLG 366 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~ 366 (499)
+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 4444444444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=3e-06 Score=63.24 Aligned_cols=97 Identities=11% Similarity=-0.010 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
..+......+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.+..+. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 345556666777788888888888777654 446677777888888888888888888887765543 566777788888
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 010853 419 CRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~ 437 (499)
...|++++|.+.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888888887765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.7e-06 Score=75.83 Aligned_cols=96 Identities=8% Similarity=0.022 Sum_probs=73.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 417 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 417 (499)
...|..+..++.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|+++.+..+. +...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 3567777778888888888888888887764 456778888888888888888888888888766543 56677888888
Q ss_pred HHhcCCHHHH-HHHHHHHH
Q 010853 418 LCRSGKIHEA-VHFLYELV 435 (499)
Q Consensus 418 ~~~~g~~~~a-~~~~~~~~ 435 (499)
+...|+.++| ...++.|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888877 44566654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=6.6e-06 Score=60.23 Aligned_cols=96 Identities=14% Similarity=0.039 Sum_probs=62.7
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
..+..+...+...|++++|...++......+. +...+..+..++...|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 44555666666677777777777666554332 4556666667777777777777777777665422 455666666777
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010853 454 CKLSMKREAYQILREMRK 471 (499)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~ 471 (499)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777777765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=7.6e-06 Score=59.89 Aligned_cols=98 Identities=9% Similarity=-0.020 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
..+..+...+...|++++|...++...... +.+...+..+..++...|++++|...++++....+. +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345555566666777777777777666543 335566666667777777777777777776654332 455666777777
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 010853 419 CRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~~ 438 (499)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 77777777777777776653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.8e-06 Score=66.85 Aligned_cols=100 Identities=8% Similarity=-0.034 Sum_probs=78.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
+...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...+++++...+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567777777888888888888888887764 446777888888888888888888888888766543 5677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 010853 417 GLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 417 ~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+|...|++++|.+.|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888887764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00021 Score=62.35 Aligned_cols=187 Identities=11% Similarity=0.060 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCC-HHHHH
Q 010853 282 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG--RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR-VEEAK 358 (499)
Q Consensus 282 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~ 358 (499)
+++++.+++.+.... +.+..+|+.-...+.+.+ .+++++..+.+++... +-+...|+.-.-.+...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 344555555555433 344455554444444444 2555555555554433 2334444444444444454 35555
Q ss_pred HHHHHHhhCCCCcCHHhHHHHHHHHHhc--------------CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---
Q 010853 359 EVFNCMLGIGVVADSTTYAIVIDGLCES--------------NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS--- 421 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 421 (499)
+.++.+.+.. +-|...|+.....+... +.++++.+.+...+...+. |...|+-+-..+.+.
T Consensus 166 ~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 166 AFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCc
Confidence 5555555543 33444454444333332 3355666666666655443 555665444333333
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCChhhHHHHHH---HHHhcCChHHHHHHHHHHHHCCCCCC
Q 010853 422 --------GKIHEAVHFLYELVDSGVTPNIVCYNVVID---GACKLSMKREAYQILREMRKNGLNPD 477 (499)
Q Consensus 422 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~g~~p~ 477 (499)
+.++++++.++++.+..+. +..++..++. +....|..+++...+.++.+ +.|-
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~ 307 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPM 307 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGG
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcc
Confidence 3467888888888876432 2222222221 11235667788888888876 4553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.6e-06 Score=65.19 Aligned_cols=98 Identities=8% Similarity=-0.043 Sum_probs=73.7
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
+...+..+...+...|++++|...|+.+...++. +...|..+..+|...|++++|+..|++....+.. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 3445566667777888888888888887765543 6667777888888888888888888888876533 5667777777
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010853 452 GACKLSMKREAYQILREMRK 471 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~ 471 (499)
+|...|++++|.+.|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=3e-07 Score=75.17 Aligned_cols=95 Identities=13% Similarity=-0.025 Sum_probs=48.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
.++..+..+|...|++++|...++.+....+. +...+..+..+|...|++++|.+.|++..+.... +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 44555555666666666666666666544322 4455666666666666666666666666655322 444555555555
Q ss_pred HhcCChHHHH-HHHHHHH
Q 010853 454 CKLSMKREAY-QILREMR 470 (499)
Q Consensus 454 ~~~g~~~~a~-~~~~~m~ 470 (499)
...++.+++. ..+..|.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 5555555444 3344443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.8e-06 Score=62.12 Aligned_cols=104 Identities=11% Similarity=0.112 Sum_probs=70.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC--CC----HHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI--HD----NYVYAA 413 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 413 (499)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...+++.++..+. ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556667777777777777777777654 445667777777777778877777777776543211 11 135667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 446 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 446 (499)
+..++...|++++|++.|++.+.. .||+...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 777888888888888888887765 3454443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.9e-06 Score=61.90 Aligned_cols=97 Identities=8% Similarity=-0.020 Sum_probs=49.5
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
+...+..+...+...|+++.|...++......+. +...|..+..++...|++++|...+++..+.+.. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 3444445555555555555555555555443322 3445555555555555555555555555554322 3445555555
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 010853 452 GACKLSMKREAYQILREMR 470 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~ 470 (499)
++...|++++|...+++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-05 Score=60.80 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=73.1
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 449 (499)
+...+..+...+...|++++|...+++..+..... ....|..+..+|...|++++|.+.+++..+.... +...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 45556666666677777777777777766543221 0456666777777777777777777777765322 45666677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhc
Q 010853 450 IDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHG 489 (499)
Q Consensus 450 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 489 (499)
..++...|++++|...+++..+ +.|+ ...+..+..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHh
Confidence 7777777777777777777766 3343 344444444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-05 Score=74.92 Aligned_cols=201 Identities=8% Similarity=-0.070 Sum_probs=118.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccC
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPNS----------------LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED 86 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (499)
..-+.+.|++++|++.|..+.+....... .++..++..|.+.|++++|...+.++....+....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45568899999999999999875422111 23677888899999999998888777665543211
Q ss_pred CccCHHhHHHHHHHHHcCCCHhHHHHHHHhccC----CC-CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc--CCC-
Q 010853 87 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ----GK-SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR--GLT- 158 (499)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--g~~- 158 (499)
......+.+.+...+...|+.++|..+++.... .+ ......++..+...+...|++++|..+++.+... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 111112233333444456777777777665432 11 1122345566777777777777777777765443 111
Q ss_pred -C-ChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCCC--cccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 159 -P-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GYLPS--EHTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 159 -p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
+ ...++..++..|...|++++|..++++.... +.++. ...+..+...+...|+++.|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 1235666667777777777777777665432 11111 1234444555566666666666655543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.40 E-value=5.4e-06 Score=62.07 Aligned_cols=110 Identities=7% Similarity=0.048 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----hhhHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT--PN----IVCYNV 448 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 448 (499)
.+..+...+...|+++.|...++++....+. +...+..+...+...|++++|...++++.+.... ++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4445555555566666666666655543322 4445555666666666666666666665543211 11 445555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 010853 449 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 487 (499)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 487 (499)
+..++...|++++|.+.++++.+. .|+...+..+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 666666666666666666666552 3444444444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.6e-06 Score=67.48 Aligned_cols=156 Identities=9% Similarity=-0.091 Sum_probs=90.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc--------------hhhHH
Q 010853 277 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG--------------IVTYN 342 (499)
Q Consensus 277 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~ 342 (499)
...|+++++.+.++.-.... ......+..+...+...|++++|+..|.+.+....-.|+ ...+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 33455555555554222111 223455666777777888888888888776654432221 15666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
.+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|++.....+. +...+..+..++...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHH
Confidence 67777777888888888888777754 446677777777888888888888888877655433 5556666666666666
Q ss_pred CHHHHH-HHHHHHHH
Q 010853 423 KIHEAV-HFLYELVD 436 (499)
Q Consensus 423 ~~~~a~-~~~~~~~~ 436 (499)
+.+++. ..+..+..
T Consensus 171 ~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 171 EARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHC-----------
T ss_pred HHHHHHHHHHHHHhc
Confidence 666555 44444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=3.4e-06 Score=62.35 Aligned_cols=92 Identities=11% Similarity=-0.062 Sum_probs=49.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
.+...+.+.|++++|...++++.+..+. +...|..+..++...|++++|+..|++..+..+. +...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3444455555555555555555544332 4445555555555556666666666555554322 3445555555555566
Q ss_pred ChHHHHHHHHHHHH
Q 010853 458 MKREAYQILREMRK 471 (499)
Q Consensus 458 ~~~~a~~~~~~m~~ 471 (499)
++++|+..+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.1e-06 Score=64.16 Aligned_cols=99 Identities=9% Similarity=-0.003 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 380 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 380 (499)
+...+..+...+...|++++|+..|.+.+... +.+...|..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45556666666777777777777776665443 2345566666666777777777777777766654 33566666666
Q ss_pred HHHHhcCChhhHHHHHHHHhcC
Q 010853 381 DGLCESNQLDEAKRFWDDIVWP 402 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~ 402 (499)
.+|...|++++|...|+++.+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 7777777777777777766543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.8e-06 Score=60.36 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=53.3
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT-PNIVCYNVVIDG 452 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 452 (499)
..+..+...+...|++++|...++++.+.... +...|..+..++...|++++|.+.+++..+.... .+...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34444555555556666666665555543322 4445555566666666666666666666554211 034455555566
Q ss_pred HHhc-CChHHHHHHHHHHHH
Q 010853 453 ACKL-SMKREAYQILREMRK 471 (499)
Q Consensus 453 ~~~~-g~~~~a~~~~~~m~~ 471 (499)
+... |++++|.+.+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 6666 666666666666554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.1e-05 Score=73.09 Aligned_cols=199 Identities=9% Similarity=-0.024 Sum_probs=89.9
Q ss_pred HHHHhccCChHHHHHHHHHHHhcCCCCCH----------------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC
Q 010853 238 LRALCLIKNPTELLNVLVFMLQTQCQPDV----------------ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 301 (499)
Q Consensus 238 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 301 (499)
.+.+...|++++|.+.+..+.+....... ..+..+...|...|++++|.+.+..+.+.....++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34455666777777777666654332211 12445555666666666666666554432110111
Q ss_pred HH----HHHHHHHHHHccCCHHHHHHHHHHHhccC---CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CC--
Q 010853 302 AV----TFTTIIFGLLNVGRIQEALNLLYQVMPQR---GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI--GV-- 369 (499)
Q Consensus 302 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~-- 369 (499)
.. ..+.+...+...|+.+.+..++.+.+... +. .....++..+...+...|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 12222223334455555555555443211 11 111234444555555555555555555554321 00
Q ss_pred -CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC--C-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 370 -VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS--N-IH-D--NYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 370 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
+....++..++..|...|++++|..++++..... . .| . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1112344555555555555555555555443110 0 11 0 12334444444555555555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-05 Score=60.81 Aligned_cols=99 Identities=11% Similarity=-0.073 Sum_probs=73.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...++.+....+. +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 45566677777777788888888777777654 445677777777888888888888888877765443 5667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 010853 417 GLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 417 ~~~~~g~~~~a~~~~~~~~~~ 437 (499)
++...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888888887764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-05 Score=60.09 Aligned_cols=92 Identities=12% Similarity=-0.037 Sum_probs=50.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHH
Q 010853 379 VIDGLCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN---IVCYNVVIDGA 453 (499)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 453 (499)
+...+...|++++|...++.+....+... ...+..+..++...|++++|...|+++.+.... + ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 34455556666666666665554332211 134555556666666666666666666654322 2 34455555566
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010853 454 CKLSMKREAYQILREMRK 471 (499)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~ 471 (499)
...|++++|...|+++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.31 E-value=4.8e-06 Score=62.37 Aligned_cols=110 Identities=9% Similarity=0.121 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC--CC----HHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI--HD----NYVYA 412 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 412 (499)
..+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...++++...... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666667777777777777766653 345666667777777777777777777776543221 11 55677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
.+..++...|++++|.+.|+++.+.. |+......+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 77778888888888888888887753 35444444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00074 Score=58.93 Aligned_cols=183 Identities=10% Similarity=0.015 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCC-HHHHHHHH
Q 010853 249 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMG--RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR-IQEALNLL 325 (499)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 325 (499)
+++.+++.+....++ +..+|+.-.-++...+ .+++++.+++.+.+.. +.|..+|+.-...+...|. ++++++.+
T Consensus 92 ~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 92 AELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 344444444443322 3444444433444444 2455555555555443 3444444444444444444 34555555
Q ss_pred HHHhccCCCCCchhhHHHHHHHHHhc--------------CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc-----
Q 010853 326 YQVMPQRGYSPGIVTYNAVLRGLFRL--------------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES----- 386 (499)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 386 (499)
.+++... +-|...|+.....+.+. +.++++++.+....... +-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 5544333 22333333333333222 33566666666666543 44555555444444433
Q ss_pred ------CChhhHHHHHHHHhcCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHcC
Q 010853 387 ------NQLDEAKRFWDDIVWPSNIHDNYVYAAMI---KGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 387 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+.++++.+.++++.+..+. +.-.+..++ ......|..+++...+.++++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3466777777777654332 222222222 12224567788888888888764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.6e-06 Score=58.69 Aligned_cols=96 Identities=16% Similarity=0.076 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC-CCHHHHHHHHHHHH
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI-HDNYVYAAMIKGLC 419 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~ 419 (499)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.... .+...+..+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3344444445555555555555544432 223444455555555555555555555555433211 02344555555555
Q ss_pred hc-CCHHHHHHHHHHHHHc
Q 010853 420 RS-GKIHEAVHFLYELVDS 437 (499)
Q Consensus 420 ~~-g~~~~a~~~~~~~~~~ 437 (499)
.. |++++|.+.+++....
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 55 5555555555555544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.2e-06 Score=65.44 Aligned_cols=137 Identities=12% Similarity=-0.033 Sum_probs=81.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCC----C-CCch
Q 010853 52 LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK----S-VNEE 126 (499)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~ 126 (499)
.++..+...+...|++++|...+.+.++..+...+......++..+...+...|++++|.+.++...+.. . ....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4566777778888888888888877776655542322223466667777777777777777776654321 1 0113
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcC----CCC-ChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 010853 127 FACGHMIDSLCRSGRNHGASRVVYVMRKRG----LTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGI 188 (499)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 188 (499)
.++..+...+...|++++|.+.+++..+.. ..+ ....+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345556666667777777777666654331 000 12344555555666666666666665544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.5e-05 Score=59.94 Aligned_cols=99 Identities=15% Similarity=0.065 Sum_probs=67.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC----HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHH
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD----STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 412 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (499)
+...+..+...+...|++++|...|++..+.. |+ ...+..+..+|...|++++|...+++.....+. +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 34455666666677777777777777776643 33 456666777777777777777777777654332 456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
.+..++...|++++|...|++..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77777777888888888887777653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=8.5e-06 Score=60.14 Aligned_cols=96 Identities=14% Similarity=-0.016 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
.+..+...+.+.|++++|...++...+.. +.+...+..+..++...|++++|...++++.+..+. +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34455666778888888888888888764 456777888888888888888888888888776544 5667788888888
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 010853 420 RSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 420 ~~g~~~~a~~~~~~~~~~ 437 (499)
..|++++|...+++.++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888888764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-05 Score=62.26 Aligned_cols=62 Identities=21% Similarity=0.110 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 409 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 409 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..|..+..+|.+.|++++|+..+++.++.+.. +...|..+..+|...|++++|...|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 35555666666666666666666666665422 455566666666666666666666666655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.2e-06 Score=61.46 Aligned_cols=85 Identities=9% Similarity=-0.013 Sum_probs=50.9
Q ss_pred cCChhhHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 010853 386 SNQLDEAKRFWDDIVWPSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 463 (499)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 463 (499)
.|++++|...|+++++.+. +.+...+..+..+|...|++++|++.|++..+..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666665431 123345666666677777777777777777665433 4556666666677777777777
Q ss_pred HHHHHHHH
Q 010853 464 QILREMRK 471 (499)
Q Consensus 464 ~~~~~m~~ 471 (499)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=6.5e-06 Score=77.12 Aligned_cols=116 Identities=10% Similarity=-0.054 Sum_probs=58.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
.+.|++++|.+.+++..+.. +.+..++..+..+|.+.|++++|...++++.+..+. +...|..+..+|...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555555442 234555555555555566666666666555544332 4445555555666666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 010853 429 HFLYELVDSGVTPNIVCYNVVIDG--ACKLSMKREAYQILR 467 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 467 (499)
+.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666665554321 22333333333 555555555555555
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=62.70 Aligned_cols=134 Identities=13% Similarity=0.048 Sum_probs=101.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVL-PN----SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 96 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (499)
+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+.+.++..+...+.......+..
T Consensus 15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 94 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 344448899999999999998764211 11 1478889999999999999999999988876655333334567888
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCC----CC-CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQG----KS-VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
+...+...|++++|.+.+++..+. +. .....++..+...+...|++++|.+.+++..+.
T Consensus 95 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 95 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 899999999999999998886532 11 112356777888899999999999999887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.14 E-value=7.9e-05 Score=55.51 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH---HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC--HHHHHHHHHH
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKG 417 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~ 417 (499)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...++.+....+... ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455667778888888877777643 2222 4666677777788888888888887765443311 4566777778
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 010853 418 LCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+...|++++|...|+++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888887763
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.11 E-value=3.8e-05 Score=69.17 Aligned_cols=91 Identities=5% Similarity=-0.082 Sum_probs=62.9
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
+..+|..+..+|.+.|++++|...++++++..+. +...|..+..+|...|++++|++.|++..+.... +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4456777777778888888888888887765433 5667777778888888888888888887776422 4556666666
Q ss_pred HHHhcCChHHHHH
Q 010853 452 GACKLSMKREAYQ 464 (499)
Q Consensus 452 ~~~~~g~~~~a~~ 464 (499)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.3e-06 Score=60.13 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010853 245 KNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 322 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 322 (499)
|++++|+..|++..+.+ -+.+...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHHH
Confidence 34444444444444432 11133445555555556666666666666555443 334555555555566666666666
Q ss_pred HHHHHHhccC
Q 010853 323 NLLYQVMPQR 332 (499)
Q Consensus 323 ~~~~~~~~~~ 332 (499)
..+.+.+...
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 6555554433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.09 E-value=4.3e-05 Score=71.25 Aligned_cols=88 Identities=7% Similarity=-0.090 Sum_probs=47.1
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
.+|..+..+|.+.|++++|...+++++...+. +...|..+..+|...|++++|+..|+++.+.... +...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 44555555566666666666666665544332 4455555566666666666666666666554321 334555555555
Q ss_pred HhcCChHHHH
Q 010853 454 CKLSMKREAY 463 (499)
Q Consensus 454 ~~~g~~~~a~ 463 (499)
.+.++.+++.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00018 Score=54.75 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC-ChhhH----HHHHHHHHhcCChHHHHHHHHHHHH-----CCC
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDS-----GVTP-NIVCY----NVVIDGACKLSMKREAYQILREMRK-----NGL 474 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~ 474 (499)
.|..+..++.+.|++++|+..+++.++. .+.| +...| .....++...|++++|+..|++..+ .|+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777777777777777777777765 1123 44566 7777777788888888888877754 455
Q ss_pred CCCHhHHHHHH
Q 010853 475 NPDAVTWRILD 485 (499)
Q Consensus 475 ~p~~~~~~~l~ 485 (499)
.+........+
T Consensus 139 ~~~~~~~~~~~ 149 (159)
T 2hr2_A 139 TPGKERMMEVA 149 (159)
T ss_dssp CTTHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55444444333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=3.3e-05 Score=72.33 Aligned_cols=119 Identities=8% Similarity=-0.021 Sum_probs=66.4
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCH
Q 010853 239 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 318 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (499)
..+.+.|++++|.+.+++..+.... +...+..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 3455566666777666666665322 45566666666666666666666666666553 34556666666666666666
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHH--HHhcCCHHHHHHHHH
Q 010853 319 QEALNLLYQVMPQRGYSPGIVTYNAVLRG--LFRLRRVEEAKEVFN 362 (499)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 362 (499)
++|.+.+++.++...- +...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666665544322 22233333333 555566666666665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.06 E-value=6.3e-05 Score=70.13 Aligned_cols=130 Identities=10% Similarity=0.043 Sum_probs=85.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCC-------------chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 010853 304 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP-------------GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 370 (499)
Q Consensus 304 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 370 (499)
.+..+...+.+.|++++|+..|.+.+......+ ....|..+..++.+.|++++|+..+++..+.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 344444455555555555555555443221111 14567777888888888888888888888764 4
Q ss_pred cCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 010853 371 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH-FLYELV 435 (499)
Q Consensus 371 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~~~ 435 (499)
.+...+..+..+|...|++++|...|+++.+..+. +...+..+..++...++.+++.+ .++.|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888889999999998888765443 44577778888888887776653 444444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.6e-05 Score=58.71 Aligned_cols=66 Identities=17% Similarity=0.093 Sum_probs=51.3
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+...|..+..+|.+.|++++|...++.++..++. +...|..+..+|...|++++|...|++..+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3456777778888888888888888888766543 66678888888888888888888888888763
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.03 E-value=6.9e-05 Score=67.50 Aligned_cols=91 Identities=10% Similarity=-0.010 Sum_probs=69.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|+++.+..+. +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34567778888888889999999988888764 446778888888888999999999999888765443 5666777777
Q ss_pred HHHhcCCHHHHHH
Q 010853 417 GLCRSGKIHEAVH 429 (499)
Q Consensus 417 ~~~~~g~~~~a~~ 429 (499)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00033 Score=66.84 Aligned_cols=135 Identities=10% Similarity=0.049 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC--ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN--QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG-KIHEAVHF 430 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~ 430 (499)
++++++.++.+.+.. +-+..+|..-..++.+.+ +++++...++++.+.++. +..+|+.-..++.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 666777777766654 345566666666666666 557777777777666544 6666766666666666 67777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhc--------------CChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHhcccCC
Q 010853 431 LYELVDSGVTPNIVCYNVVIDGACKL--------------SMKREAYQILREMRKNGLNP-DAVTWRILDKLHGNRGN 493 (499)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 493 (499)
++++++.++. |...|+.....+.+. +.++++++.++++.. +.| |...|..+-.++.+.|.
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCC
Confidence 7777666544 566666665555542 446778888877776 334 56677777777776665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00054 Score=65.41 Aligned_cols=173 Identities=9% Similarity=-0.023 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhc
Q 010853 282 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR----------IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 351 (499)
Q Consensus 282 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 351 (499)
.++|++.++++.... +.+...|+.--.++...++ ++++++.+++++... +-+..+|+.-.-++.+.
T Consensus 45 ~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 456677777777654 4445556555555555555 778888887776554 44555666666666777
Q ss_pred C--CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC-ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-------
Q 010853 352 R--RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN-QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS------- 421 (499)
Q Consensus 352 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 421 (499)
+ +++++++.++++.+.. +-+..+|+.-..++.+.| .++++.+.++++++.++. |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 7 6688888888888765 457777777777777777 788888888888776655 677777776666553
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 010853 422 -------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 461 (499)
Q Consensus 422 -------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 461 (499)
+.++++++.+++++...+. |...|..+-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999999887543 67788887777777666443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00052 Score=51.76 Aligned_cols=111 Identities=4% Similarity=-0.062 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 010853 352 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEA 427 (499)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 427 (499)
+++++|..+|++..+.| .++.. |...|...+.+++|.+.|++..+.+ +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677777777777776 33333 6666666677777888888777653 55667777777776 6788888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 010853 428 VHFLYELVDSGVTPNIVCYNVVIDGACK----LSMKREAYQILREMRKNG 473 (499)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 473 (499)
.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888887764 45667777777777 778888888888887766
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.91 E-value=4.6e-05 Score=67.83 Aligned_cols=59 Identities=19% Similarity=0.125 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
|..+..++.+.|++++|...++...+.. +.+...+..+..+|...|++++|...|+++.
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555555444432 2234444444444444555555555544443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.91 E-value=5.6e-05 Score=57.59 Aligned_cols=102 Identities=13% Similarity=-0.016 Sum_probs=58.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCC------ccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCC-----
Q 010853 52 LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL------SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG----- 120 (499)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 120 (499)
..+......+.+.|++++|...|.+.++..+..+.. ..+...|..+..++.+.|++++|+..++...+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345667777888888888888888888766552110 011225666666666666666666665555443
Q ss_pred --CCCCchhhH----HHHHHHHHhcCChhhHHHHHHHHHh
Q 010853 121 --KSVNEEFAC----GHMIDSLCRSGRNHGASRVVYVMRK 154 (499)
Q Consensus 121 --~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~ 154 (499)
++ .+..+| .....++...|++++|+..|++..+
T Consensus 92 e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 32 233344 4455555555555555555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.9e-05 Score=69.18 Aligned_cols=149 Identities=8% Similarity=-0.024 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 380 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 380 (499)
....+..+...+.+.|++++|...|.+.+... |+... +...++.+++...+. ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHH
Confidence 35556677777888888888888888766432 33221 222333333332221 13678888
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCh
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG-ACKLSMK 459 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 459 (499)
.+|.+.|++++|...+++++...+. +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876543 6778999999999999999999999998765422 44455555544 3345667
Q ss_pred HHHHHHHHHHHH
Q 010853 460 REAYQILREMRK 471 (499)
Q Consensus 460 ~~a~~~~~~m~~ 471 (499)
+.+..+|+.|..
T Consensus 316 ~~a~~~~~~~l~ 327 (338)
T 2if4_A 316 QKQKEMYKGIFK 327 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhC
Confidence 788888888875
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00011 Score=68.42 Aligned_cols=124 Identities=13% Similarity=0.018 Sum_probs=84.6
Q ss_pred HHhcCCHHHHHHHHHHHhhC-----C--CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhc-----CCCC-C-CHHHHHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGI-----G--VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW-----PSNI-H-DNYVYAA 413 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~ 413 (499)
+...|++++|+.++++..+. | .+....+++.|..+|...|++++|..++++... .|.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45677888888777766532 1 112245678888888888888888888877642 2221 2 2236788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVD-----SGVT-PN-IVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
|...|...|++++|..++++..+ .|.. |+ ..+.+.+..++...+++++|..++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999998888888764 2322 22 23456666777788888999999888875
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=4.5e-05 Score=57.97 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=53.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCCh----------hhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL----------DEAKRFWDDIVWPSNIHDNYVYAAMIKG 417 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~ 417 (499)
..+.+.+++|...++...+.. +.+...|..+..++...+++ ++|+..|++.++.++. +...|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 345556777777777777654 44666676666666666554 3666666666555443 44556666666
Q ss_pred HHhcC-----------CHHHHHHHHHHHHHc
Q 010853 418 LCRSG-----------KIHEAVHFLYELVDS 437 (499)
Q Consensus 418 ~~~~g-----------~~~~a~~~~~~~~~~ 437 (499)
|...| ++++|++.|++.++.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 66553 566666666666654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00032 Score=50.96 Aligned_cols=78 Identities=15% Similarity=0.026 Sum_probs=35.2
Q ss_pred HHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 357 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 357 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
|...|++..+.. +.+...+..+..+|...|++++|...++++....+. +...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444432 233444444444455555555555555544433222 333444444444455555555554444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00017 Score=67.16 Aligned_cols=128 Identities=8% Similarity=-0.107 Sum_probs=79.1
Q ss_pred HhcCChHHHHHHHHHHHhCC---CCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc-cCCccC-HHhHHHH
Q 010853 27 AITGEMDVAYKVFDEMRHCG---VLP----NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE-EDLSVN-NAAFANL 97 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~-~~~~~~l 97 (499)
..+|++++|+.++++.++.. ..| ...+++.|..+|..+|++++|..++.++++..... +...|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 57888999988888876421 112 23567888888888999999988888877654432 122333 3467777
Q ss_pred HHHHHcCCCHhHHHHHHHhccC-----CCCC-Cc-hhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQ-----GKSV-NE-EFACGHMIDSLCRSGRNHGASRVVYVMRK 154 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 154 (499)
...|...|++++|..++++... .|.. |+ ..+.+.+-.++...+.+++|..+|..+++
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777887777777666432 1210 11 22333444555555666666666665554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00029 Score=51.17 Aligned_cols=79 Identities=10% Similarity=-0.022 Sum_probs=53.2
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
.|...++++.+..+. +...+..+..+|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666666654433 5566777777777777777777777777766422 45566777777777777777777777765
Q ss_pred H
Q 010853 471 K 471 (499)
Q Consensus 471 ~ 471 (499)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00048 Score=47.24 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 334444444444444444444444444321 1333444444444444444444444444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00019 Score=51.64 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
..+..+...+...|++++|...+++.....+. +...|..+..++...|++++|++.+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34444555555555555555555555543322 4445555555555555566665555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0024 Score=48.06 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=7.7
Q ss_pred cCCHHHHHHHHHHHHHc
Q 010853 421 SGKIHEAVHFLYELVDS 437 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~ 437 (499)
.+++++|.+.|++..+.
T Consensus 110 ~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHC
Confidence 34444444444444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00052 Score=49.25 Aligned_cols=84 Identities=20% Similarity=0.150 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------Hh
Q 010853 407 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-------AV 479 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-------~~ 479 (499)
+...|..+...+...|++++|++.|++..+.... +...+..+..++...|++++|++.+++..+ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 4567888999999999999999999999987533 678899999999999999999999999987 4565 44
Q ss_pred HHHHHHHHhcccCC
Q 010853 480 TWRILDKLHGNRGN 493 (499)
Q Consensus 480 ~~~~l~~~~~~~g~ 493 (499)
.+..+..++...|+
T Consensus 80 ~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 80 LQYRLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00023 Score=54.10 Aligned_cols=100 Identities=9% Similarity=-0.021 Sum_probs=66.0
Q ss_pred hcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010853 385 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI----------HEAVHFLYELVDSGVTPNIVCYNVVIDGAC 454 (499)
Q Consensus 385 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (499)
+.+.+++|...++...+..+. +...|..+..++...+++ ++|+..|++.++.++. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 445667777777777665544 666676666677666553 4777777777776433 5566777777776
Q ss_pred hcC-----------ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 010853 455 KLS-----------MKREAYQILREMRKNGLNPDAVTWRILDKLH 488 (499)
Q Consensus 455 ~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 488 (499)
..| ++++|++.|++..+ +.|+...|..-++..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 653 67777777777776 567666666555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00042 Score=48.79 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHhHHHHHH
Q 010853 407 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG-LNPDAVTWRILD 485 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~l~ 485 (499)
+...+..+..+|...|++++|++.|++..+.+.. +...|..+..+|...|++++|.+.+++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 3445555666666666666666666666655422 34455556666666666666666666554311 123444444444
Q ss_pred HHhcccC
Q 010853 486 KLHGNRG 492 (499)
Q Consensus 486 ~~~~~~g 492 (499)
..+...+
T Consensus 85 ~~l~~~~ 91 (100)
T 3ma5_A 85 DAKLKAE 91 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 4444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0009 Score=45.83 Aligned_cols=79 Identities=9% Similarity=0.135 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
..+..+...+...|++++|...+++.....+. +...+..+..++...|++++|.+.+++..+.... +...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34444455555555555555555555443222 3445555555555556666666655555554321 334444444444
Q ss_pred H
Q 010853 454 C 454 (499)
Q Consensus 454 ~ 454 (499)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00052 Score=48.31 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=33.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 329 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 329 (499)
+...+..+..+|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.+.+.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555443 2334455555555555555555555555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0052 Score=53.91 Aligned_cols=76 Identities=18% Similarity=0.099 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 405 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...+|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 3466677777777777788888888888888875 6777777777788888888888888888877 56777666544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.32 E-value=6.1e-06 Score=73.55 Aligned_cols=246 Identities=13% Similarity=0.111 Sum_probs=163.9
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhH
Q 010853 50 NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 129 (499)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 129 (499)
.+..|+.|..+..+.+...+|+.-| + -.-|+..|..++....+.|.+++-++.+....+.. .++..=
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy------I-----kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~ID 119 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY------I-----KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVE 119 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS------C-----CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH------H-----hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccH
Confidence 4567999999999999998886532 1 12255677789999999999999999988877664 344555
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCC------------------
Q 010853 130 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG------------------ 191 (499)
Q Consensus 130 ~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------ 191 (499)
+.|+-+|++.++..+-.+.+. .||..-...+.+-|...|.++.|.-+|..+....
T Consensus 120 teLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred HHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999876544332 4677777888888888888888887776543211
Q ss_pred --CCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhH
Q 010853 192 --YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 269 (499)
Q Consensus 192 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 269 (499)
-.-+..||..+-.+|...+++..|.-.--.+.-.... ...++..|-..|.+++.+.+++.-.... ......|
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmF 266 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF 266 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHH
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHH
Confidence 1235677888888888888777776555444422211 2234566777888888888877666322 3456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------CHHHHHHHHHHHHccCCHHHHHH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAP-------DAVTFTTIIFGLLNVGRIQEALN 323 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~ 323 (499)
+-|.-.|++- ++++..+-++..-.+-. .| ....|..++..|.+-.+++.|..
T Consensus 267 TELaILYsKY-~PeKlmEHlklf~sriN-ipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 267 TELAILYSKF-KPQKMREHLELFWSRVN-IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHSS-CTTHHHHHHTTSSSSSC-CTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhcc-HHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7777777765 44444444443322211 22 23457777777777777776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.012 Score=51.71 Aligned_cols=74 Identities=15% Similarity=-0.006 Sum_probs=51.2
Q ss_pred CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 010853 370 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 447 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (499)
+.+..++..+...+...|+++.|...++++...+ |+...|..+...+...|++++|.+.+++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4566677766666666678888888887777654 56666666777777778888888888777776 34444543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0039 Score=46.81 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 407 DNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSGVTP--NIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+..+...+..++++.+ +.++++.+|++..+.+ .| +...+-.+.-+|.+.|++++|.+.++.+.+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4444444444444444 3334555555544432 12 223333333444555555555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0067 Score=55.46 Aligned_cols=88 Identities=9% Similarity=-0.114 Sum_probs=41.3
Q ss_pred cCChHHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcc-CCccCH-HhHHHHHH
Q 010853 29 TGEMDVAYKVFDEMRHC---GVLPN----SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE-DLSVNN-AAFANLVD 99 (499)
Q Consensus 29 ~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~ 99 (499)
.|++++|+.++++.++. -..|+ ..+++.|..+|..+|++++|..++.++++-..... ...|++ .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35556666666555431 11111 23455556666666666666665555554333221 122222 24444555
Q ss_pred HHHcCCCHhHHHHHHHh
Q 010853 100 SLCREGYVNEVFRIAED 116 (499)
Q Consensus 100 ~~~~~~~~~~a~~~~~~ 116 (499)
.|..+|++++|..++++
T Consensus 391 ~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 391 LYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHH
Confidence 55555555555444444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.023 Score=57.28 Aligned_cols=123 Identities=12% Similarity=0.050 Sum_probs=69.5
Q ss_pred HHcCCCHhHHHH-HHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhH
Q 010853 101 LCREGYVNEVFR-IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 179 (499)
Q Consensus 101 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 179 (499)
....+++++|.+ ++..+. +......++..+.+.|..+.|+++.+. . ..-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHH
Confidence 345677777766 443322 011225566667777777777765521 1 111333456777777
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHH
Q 010853 180 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 256 (499)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 256 (499)
|.++.+.+ .+...|..+...+.+.++++.|++.|.++.. +..+...+...++.+...++.+.
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 77775432 3556777777777788888888777776631 33344444445555444444333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.017 Score=39.64 Aligned_cols=64 Identities=14% Similarity=-0.008 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 407 DNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+...+..+..++...++ .++|..++++..+.+.. +......+...+...|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444443332 45555555555554322 444555555555555555555555555554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0059 Score=55.82 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDI 399 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~ 399 (499)
+++.|..+|...|++++|..+++++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 4444444555555555555444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.017 Score=39.61 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=45.3
Q ss_pred CcCHHhHHHHHHHHHhcCC---hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 370 VADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+.+...+..+..++...++ .++|..++++..+.++. +......+...+...|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455666666666654443 57777777777765544 56666667777777777777777777777654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.019 Score=52.48 Aligned_cols=105 Identities=14% Similarity=0.026 Sum_probs=70.6
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhh
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPS---NIH----DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-----G-VTPN-IVC 445 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~ 445 (499)
+..+...|++++|..++++..+.. ..+ ...+++.+..+|...|++++|..++++.++. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556788888888888776321 112 1236788888888899999999988887642 2 1222 246
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHhHHHHH
Q 010853 446 YNVVIDGACKLSMKREAYQILREMRK---NGLNPDAVTWRIL 484 (499)
Q Consensus 446 ~~~l~~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~l 484 (499)
++.|...|...|++++|+.++++..+ .-+.||......+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88888889999999999998888753 2233554433333
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.01 Score=54.28 Aligned_cols=92 Identities=12% Similarity=0.020 Sum_probs=64.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC---CCc----CHHhHHHHHHHHHhcCChhhHHHHHHHHhc-----CCC-CCC-HHH
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIG---VVA----DSTTYAIVIDGLCESNQLDEAKRFWDDIVW-----PSN-IHD-NYV 410 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~~-~~~ 410 (499)
+..+...|++++|+.++++..+.. +.| ...+++.|..+|...|++++|..+++++.. .|. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888888776431 112 234677888888888888888888877642 122 122 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78888899999999999998888764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.13 Score=37.24 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 010853 408 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 474 (499)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 474 (499)
.......+..+..+|+-++-.+++..+.. +-+|++...-.+..||.+.|+..++.+++.++.+.|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33445555556666666666666655432 2245555666666666666666666666666666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.2 Score=50.47 Aligned_cols=128 Identities=17% Similarity=0.116 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 349 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 349 (499)
..++..+.+.|.++.|.++.++ |. .-.......|++++|.++.+. + .+...|..+...+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~--------~~-----~~f~~~l~~~~~~~A~~~~~~-~------~~~~~W~~la~~al 692 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD--------QD-----QKFELALKVGQLTLARDLLTD-E------SAEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC--------HH-----HHHHHHHHHTCHHHHHHHHTT-C------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC--------cc-----hheehhhhcCCHHHHHHHHHh-h------CcHhHHHHHHHHHH
Confidence 5555566666666666654421 11 112234456666666665433 1 24556666666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 429 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 429 (499)
+.++++.|++.|..+.. |..+...+...|+.+...++.+.....+. ++....+|.+.|++++|.+
T Consensus 693 ~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp HTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHH
Confidence 77777777776666543 23344444445555554444444433221 2333334444455555554
Q ss_pred HHH
Q 010853 430 FLY 432 (499)
Q Consensus 430 ~~~ 432 (499)
++.
T Consensus 758 ~~~ 760 (814)
T 3mkq_A 758 LLI 760 (814)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.024 Score=39.21 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=29.3
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
..+...|++++|...++++.+..+. +.. .|..+..+|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555555443322 333 4555555555555555555555555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.032 Score=38.60 Aligned_cols=58 Identities=21% Similarity=0.195 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIV-CYNVVIDGACKLSMKREAYQILREMRKN 472 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 472 (499)
....+...|++++|.+.++++.+.... +.. .+..+..+|...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 456778899999999999999987533 566 8888999999999999999999999874
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.23 Score=38.28 Aligned_cols=130 Identities=11% Similarity=0.109 Sum_probs=91.8
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (499)
.......|+++.|.++.++. .+...|..+.......|+++-|++.|..... +..+.-.|...|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 44566789999999877652 4677899999999999999999999988764 3455556777888
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 468 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (499)
.+....+-+.....+. ++....++...|+++++.++|.+. |-.| -.+......|..+.|.++.++
T Consensus 76 ~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~------eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLP------LAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHH------HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChH------HHHHHHHHcCcHHHHHHHHHH
Confidence 8887777766655442 566666777889999999988543 2222 111122335667778888776
Q ss_pred H
Q 010853 469 M 469 (499)
Q Consensus 469 m 469 (499)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.04 Score=41.34 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC---ChhhHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN---QLDEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 428 (499)
...+.+-|.+..+.| +++..+...+..++++.+ +.+++..+++++.+.+ .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345566666666655 467777777888888877 5668888888887654 22 2344555666778888888888
Q ss_pred HHHHHHHHc
Q 010853 429 HFLYELVDS 437 (499)
Q Consensus 429 ~~~~~~~~~ 437 (499)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888876
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.052 Score=38.10 Aligned_cols=64 Identities=8% Similarity=0.070 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPS------NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.-+..+...+...|++..|...++.+.+.. ..+...++..+..++.+.|++++|..+++++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334444555555555555555555443210 1123334445555555555555555555555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.22 Score=38.46 Aligned_cols=130 Identities=13% Similarity=0.100 Sum_probs=90.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcC
Q 010853 273 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 352 (499)
Q Consensus 273 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 352 (499)
.......|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+.- -+..+.-.|...|
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----------D~~~L~~Ly~~tg 74 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH----------SFDKLSFLYLVTG 74 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----------CHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----------CHHHHHHHHHHhC
Confidence 34556789999999887654 578899999999999999999999987731 2445555567788
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 432 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 432 (499)
+.+....+-+.....| . ++.-...+.-.|+++++.+++.+.. ..|. -+-.....|-.+.|.++.+
T Consensus 75 ~~e~L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~---r~~e------A~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG---SLPL------AYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp CHHHHHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT---CHHH------HHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC---ChHH------HHHHHHHcCcHHHHHHHHH
Confidence 8888777776666655 2 4555556677899999999987652 1111 1112223466777877776
Q ss_pred HH
Q 010853 433 EL 434 (499)
Q Consensus 433 ~~ 434 (499)
++
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 65
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.23 Score=36.00 Aligned_cols=138 Identities=16% Similarity=0.158 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 358 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 358 (499)
.|.+++..++..+... +.+..-|+.++.-....-+-+-..++++..=.-..+ ...|+.....
T Consensus 20 dG~v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp TTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred hhhHHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 4566666666666554 334444555544444444444444444442211111 1123333333
Q ss_pred HHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 359 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
..+-.+- .+.......+......|.-+.-.+++..+.. +..|++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3333221 1233344445555566666666666666432 234455555666666666666666666666666666
Q ss_pred CC
Q 010853 439 VT 440 (499)
Q Consensus 439 ~~ 440 (499)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 43
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.041 Score=38.68 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=45.7
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccC-CccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCC
Q 010853 50 NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED-LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 121 (499)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 121 (499)
+...+..+...+.+.+++..|...+..+++..+.... .......+..+..++.+.|+++.|+..++...+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4556667788888888888888888777776544321 12234455666666666666666666666655433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.056 Score=45.48 Aligned_cols=92 Identities=10% Similarity=0.095 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhCCCCcC---HHhHHHHHHHHHh-----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCH
Q 010853 354 VEEAKEVFNCMLGIGVVAD---STTYAIVIDGLCE-----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS-GKI 424 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 424 (499)
...|...+++..+. .|+ ...|..+...|.. -|+.++|.++|++.++.++.-+..++..+.+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666667776664 344 5577777777777 488888888888887765543466777778888774 888
Q ss_pred HHHHHHHHHHHHcCCC--CChhhHH
Q 010853 425 HEAVHFLYELVDSGVT--PNIVCYN 447 (499)
Q Consensus 425 ~~a~~~~~~~~~~~~~--~~~~~~~ 447 (499)
+++.+.+++.+..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888887655 5544444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.079 Score=39.23 Aligned_cols=112 Identities=11% Similarity=0.143 Sum_probs=66.4
Q ss_pred chhhHHHHHHHHHhcCCH------HHHHHHHHHHhhCCCCcCHH-hHHHHHH------HHHhcCChhhHHHHHHHHhcCC
Q 010853 337 GIVTYNAVLRGLFRLRRV------EEAKEVFNCMLGIGVVADST-TYAIVID------GLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .+...+. .+...+|.++|.++|+.+++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 334444444444444555 5666666666653 344321 1111111 1223478888888888886543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 404 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
-.. ..+|......-.++|+...|.+++.+.+..+..| ...+...++
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 333 6677777777788888888888888888877654 344444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.62 Score=42.78 Aligned_cols=58 Identities=16% Similarity=-0.043 Sum_probs=31.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHhcCCCHHHHHHHHHHH
Q 010853 165 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS-----EHTYKVLVEGLCGESDLEKARKVLQFM 222 (499)
Q Consensus 165 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 222 (499)
..|...+...|++.+|..++.++...-...+ ...+...++.|...+++..|..++.++
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455566666666666666666543211111 123444555566666666666666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.64 Score=39.18 Aligned_cols=121 Identities=12% Similarity=0.018 Sum_probs=76.4
Q ss_pred CCCHhHHHHHHHhccCCCCCCchhhHHHHHHH-HHhc--CC------hhhHHHHHHHHHhcCCCCC---hhhHHHHHHHH
Q 010853 104 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS-LCRS--GR------NHGASRVVYVMRKRGLTPS---LVSYNSIVHGL 171 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--~~------~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~ 171 (499)
.++..+..+.+.++...+ +....|..++.+ +... |+ ...|..++++..+. .|+ ...|..+...|
T Consensus 134 ~~~~~~~~~~l~~~~~~d--ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY 209 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVD--VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFY 209 (301)
T ss_dssp SSCHHHHHHHHTTCCGGG--HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccc--cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHH
Confidence 344444444455444322 334455555543 2332 33 35677777777776 455 44778888888
Q ss_pred Hc-----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCC
Q 010853 172 CK-----HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE-SDLEKARKVLQFMLSKKDV 228 (499)
Q Consensus 172 ~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~ 228 (499)
.. -|+.++|.+.|++..+.+..-+..++....+.++.. |+.+.+.+.+++.+.....
T Consensus 210 ~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 210 AAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 77 488888888888888754222366777777777774 8888888888888765544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.00022 Score=63.94 Aligned_cols=237 Identities=9% Similarity=0.036 Sum_probs=128.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHH
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 102 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (499)
..+..+.+++.+|++.|-+. .|+..|..++.+..+.|.+++-...+. |..+. .-++..=+.|+-+|+
T Consensus 61 gkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~-----MaRk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 61 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ-----MARKK--ARESYVETELIFALA 127 (624)
T ss_dssp HHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHH-----TTSTT--CCSTTTTHHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHH--hcccccHHHHHHHHH
Confidence 44445556666665544221 245556667777777777666655332 11110 111122233666666
Q ss_pred cCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc--------------------CCCCChh
Q 010853 103 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR--------------------GLTPSLV 162 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------------g~~p~~~ 162 (499)
+.++..+..+.+ ..|+..-...+.+-|...|.++.|.-+|..+..- .-.-++.
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 666654432211 1133333344555555555555554444333110 0123678
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 010853 163 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 242 (499)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (499)
||..+-.+|...+.+.-|.-.--.++- ...-...++..|-..|-+++.+.+++.-. .-......+|.-+.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEagl-glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAAL-GLERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT-TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh-CCCchhHHHHHHHHHHHH
Confidence 899999999999988877665444432 22234456777888999999999988876 233445567777777776
Q ss_pred ccCChHHHHHHHHHHHhc-CCC------CCHhhHHHHHHHHHhcCCHHHHH
Q 010853 243 LIKNPTELLNVLVFMLQT-QCQ------PDVITLNTVINGFCKMGRIEEAL 286 (499)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~ 286 (499)
+- ++++..+.++..-.. +++ -....|.-++-.|.+-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 65 555555555432221 111 02334556666666666666554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.12 Score=38.31 Aligned_cols=107 Identities=9% Similarity=-0.024 Sum_probs=62.5
Q ss_pred CChhhHHHHHHHHhccCCH------HHHHHHHHHHHHHhhhccCCccCHHhHHHHHHH---HHcCCCHhHHHHHHHhccC
Q 010853 49 PNSLTYSVLVRGVLRTRDV------ERANVLMFKLWERMKEEEDLSVNNAAFANLVDS---LCREGYVNEVFRIAEDMPQ 119 (499)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~ 119 (499)
.|..+|-..+...-+.|+. ++.+.+|.+++..+|....... ..|.-+.-- +...++.++|.++|+.+.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~w--rrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQN--ESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTC--HHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3666777777777777777 7777777778777766521111 122211111 1223677777777776644
Q ss_pred CCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 010853 120 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT 158 (499)
Q Consensus 120 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~ 158 (499)
.+-.- ...|......-.+.|++..|.+++......+.+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 32222 445555555566677777777777777766555
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.1 Score=37.59 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhh---HHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE---AKRFWDDIVWPSNI-HDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
....+.+-|......| .++..+-..+..++.+..+... +..+++.+.+.+.. -.....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3334444444443333 2444444444555555444333 44555554433200 01112223334444555555555
Q ss_pred HHHHHHHHc
Q 010853 429 HFLYELVDS 437 (499)
Q Consensus 429 ~~~~~~~~~ 437 (499)
+.++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.13 Score=37.12 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=54.5
Q ss_pred cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChH
Q 010853 386 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE---AVHFLYELVDSGVTP--NIVCYNVVIDGACKLSMKR 460 (499)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 460 (499)
......+++-+.+....+. ++..+-..+..++.+..+... ++.+++++...+ .| .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3344455555555544333 455566666777777766554 777777776653 12 2334445556777788888
Q ss_pred HHHHHHHHHHHCCCCCCH
Q 010853 461 EAYQILREMRKNGLNPDA 478 (499)
Q Consensus 461 ~a~~~~~~m~~~g~~p~~ 478 (499)
+|.+.++.+.+ +.|+.
T Consensus 92 ~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHH--hCCCC
Confidence 88888888776 56644
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.51 E-value=4.4 Score=40.65 Aligned_cols=259 Identities=14% Similarity=0.103 Sum_probs=134.5
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCc--hhhHHHHHHHHhccCChHHHHHHHHHHHhcCC-------CCCHhhHHHHHHHH
Q 010853 206 LCGESDLEKARKVLQFMLSKKDVDR--TRICNIYLRALCLIKNPTELLNVLVFMLQTQC-------QPDVITLNTVINGF 276 (499)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 276 (499)
....|+.+++..+++..+..+...+ ...-..+.-+....|..+++..++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566777777777766553211122 22333333444555555567777766654321 01111122222223
Q ss_pred HhcCC-HHHHHHHHHHHhhCCCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCC
Q 010853 277 CKMGR-IEEALKVLNDMVAGKFCAPDAVTFT--TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 353 (499)
Q Consensus 277 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 353 (499)
.-.|. -+++.+.+..+.... .+...... ++...+.-.|+.+....++..++... ..+..-...+.-++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCC
Confidence 22332 245555555555432 11111122 23334556677766666666544321 1122222333334457788
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhH--HHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTY--AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 431 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 431 (499)
.+.+..+.+.+.... .|....- ..+.-+|+..|+.....++++.+.... ..+..-...+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888887642 2222222 233456778889888888988887532 223333333334455567766677777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 010853 432 YELVDSGVTPNIVCYNVVIDGACKLSMK-REAYQILREMRK 471 (499)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 471 (499)
+.+.+.+ .|....-..+..+....|.. .++..++..+..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6555543 45555444555555555554 567777777763
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.51 Score=42.44 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHhHHHHHHH
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-----KNGLNPDAVTWRILDK 486 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~~~l~~ 486 (499)
..++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|++.|++.. +.|+.|+..+-...-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445555566666666666666665553 2255566666666666666666666666653 2466666555444333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.66 Score=35.16 Aligned_cols=64 Identities=8% Similarity=-0.025 Sum_probs=48.0
Q ss_pred ChhhHHHHHHhcCChHHHHHHHHHHHhCC-CCCCh-------hhHHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 010853 18 PVASLTSALAITGEMDVAYKVFDEMRHCG-VLPNS-------LTYSVLVRGVLRTRDVERANVLMFKLWERM 81 (499)
Q Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (499)
........+...|.++.|+-+.+.+.... ..|+. .++..+.+++...++|.+|...|.++++.-
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 45666777799999999998888865431 12332 356778899999999999999998876643
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.36 E-value=7.3 Score=39.14 Aligned_cols=296 Identities=12% Similarity=0.058 Sum_probs=148.5
Q ss_pred HHHHHHHHhcCChhhH-HHHH-HHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcc--cHHHHHHH
Q 010853 130 GHMIDSLCRSGRNHGA-SRVV-YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH--TYKVLVEG 205 (499)
Q Consensus 130 ~~l~~~~~~~~~~~~A-~~~~-~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 205 (499)
.++.+++...|--... .... +.+.+. ++-...-.+.--+....|+.++++.++......+-..+.. .-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 4566777777754333 2111 222222 1111112223334556788888887776544311011111 11223334
Q ss_pred HhcCCCHHHHHHHHHHHHhCCC-------CCchhhHHHHHHHH--hccCChHHHHHHHHHHHhcCCCCCHhhHH--HHHH
Q 010853 206 LCGESDLEKARKVLQFMLSKKD-------VDRTRICNIYLRAL--CLIKNPTELLNVLVFMLQTQCQPDVITLN--TVIN 274 (499)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~ 274 (499)
....|..+++..++...+.... .+....-..+.-++ ...++ +++.+.+..+....- +...... .+..
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGl 498 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGL 498 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhh
Confidence 4556655667777766554321 01111222222333 33343 345555555554321 1111112 2333
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHH---HHHHHHHhc
Q 010853 275 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN---AVLRGLFRL 351 (499)
Q Consensus 275 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~ 351 (499)
.+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+.... .|.. -|. ++.-+|+..
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~--dp~v-Rygaa~alglAyaGT 573 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGRQELADDLITKMLASD--ESLL-RYGGAFTIALAYAGT 573 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS--CHHH-HHHHHHHHHHHTTTS
T ss_pred hhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC--CHHH-HHHHHHHHHHHhcCC
Confidence 4556678888888888776532 2222223333334446777777777666543222 2222 232 233456778
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 010853 352 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI-HEAVHF 430 (499)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~ 430 (499)
|+......++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+++++
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 89888888998888753 2233333333344556778777888887666543 34444334444444444443 678888
Q ss_pred HHHHHH
Q 010853 431 LYELVD 436 (499)
Q Consensus 431 ~~~~~~ 436 (499)
+..+..
T Consensus 652 L~~L~~ 657 (963)
T 4ady_A 652 LDPLTK 657 (963)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 888864
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.20 E-value=5 Score=36.77 Aligned_cols=242 Identities=8% Similarity=0.065 Sum_probs=132.3
Q ss_pred cCChHHHHHHHHHHHhc-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH----c
Q 010853 244 IKNPTELLNVLVFMLQT-----QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL----N 314 (499)
Q Consensus 244 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 314 (499)
.++++.|.+.+..+.+. ...........++..|...|+++...+.+..+.+..+.. ......+++.+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhc
Confidence 36788888877666542 233345567778888999999998888887776654312 222333433322 2
Q ss_pred cCCHH--HHHHHHHHHhccCCCCCc--------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCcC---HHhHHHH
Q 010853 315 VGRIQ--EALNLLYQVMPQRGYSPG--------IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI--GVVAD---STTYAIV 379 (499)
Q Consensus 315 ~~~~~--~a~~~~~~~~~~~~~~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l 379 (499)
....+ .-..+... + ..+... ......+...+...|++.+|..++..+... |.... ...+...
T Consensus 107 ~~~~d~~~~~~~i~~-l--~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 107 SKSLDLNTRISVIET-I--RVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HCTTHHHHHHHHHHC-C--SSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHH-H--HHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22222 22222221 1 111111 112345667777888888888888887632 22211 2356666
Q ss_pred HHHHHhcCChhhHHHHHHHHh----cCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHH--
Q 010853 380 IDGLCESNQLDEAKRFWDDIV----WPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVI-- 450 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~----~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~-- 450 (499)
++.|...+++.+|..++.++. .....|+ ...+...+..+...+++.+|.+.|.++.+. ...-+...+..++
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 778888888888888888763 1212222 124566777777888888888877777652 1122233232222
Q ss_pred --HHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcc
Q 010853 451 --DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 490 (499)
Q Consensus 451 --~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 490 (499)
.+..-.+....-..++........-++...+..|+++|..
T Consensus 264 ~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~ 305 (445)
T 4b4t_P 264 IVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 305 (445)
T ss_dssp HHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHh
Confidence 1222233333333444444443333455666777766643
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.05 E-value=1.6 Score=31.60 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 010853 405 IHDNYVYAAMIKGLCRSGKI---HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 479 (499)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 479 (499)
.|+..+--.+..++.+..+. .+++.+++++...+..-....+-.+.-++.+.|++++|.+..+.+.+ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 34444444455555555433 35666666666554221233444555566667777777777666665 455543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.85 E-value=7.8 Score=38.04 Aligned_cols=126 Identities=14% Similarity=0.005 Sum_probs=76.1
Q ss_pred HHHHHHHHccCC-hhHHHHHHHHHHhCCCCCCcccH--HHHHHHHhcCC-CHHHHHHHHHHHHhC------CCCC-c---
Q 010853 165 NSIVHGLCKHGG-CMRAYQLLEEGIQFGYLPSEHTY--KVLVEGLCGES-DLEKARKVLQFMLSK------KDVD-R--- 230 (499)
Q Consensus 165 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~--- 230 (499)
..++..+...++ .+.|..+++++.+.. |....+ ..++..+...+ +--+|.+++.+..+. ...+ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555666 477888888887743 433332 23333333333 223455555554321 1111 1
Q ss_pred -------hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010853 231 -------TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 293 (499)
Q Consensus 231 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 293 (499)
......-...+...|+++-|+.+.++.....+ -+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222234455668888989988888877643 367788999999999999999998888774
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.42 E-value=1.7 Score=29.51 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
.=+.++-++.+...+..|++.+..+.+++|.+.+++..|.++|+-.+.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.02 E-value=1 Score=44.09 Aligned_cols=53 Identities=11% Similarity=0.011 Sum_probs=42.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 416 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
+.+...|+++-|+++.++....- +-+-.+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45667788899999888888763 225678889999999999999988888776
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.69 Score=41.62 Aligned_cols=65 Identities=5% Similarity=0.016 Sum_probs=35.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 92 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
...|++.+|+..++.+.... +-+...+..++.++.+.|+..+|...|.++-..+.+.-++.|...
T Consensus 182 l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 182 IACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 45555666655555555432 234555555666666666666666555555555544445555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.65 E-value=5.5 Score=41.75 Aligned_cols=191 Identities=13% Similarity=0.109 Sum_probs=118.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCC--------------
Q 010853 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP-------------- 336 (499)
Q Consensus 271 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 336 (499)
.++..+...+..+.+.++..-. +.+....-.+..++...|++++|.+.|.+.. .++..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhhhhhcccccc
Confidence 4555566677777766655432 3344444556778889999999999997742 22211
Q ss_pred ---------chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH----HhHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 010853 337 ---------GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS----TTYAIVIDGLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 337 ---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
-..-|..++..+.+.+.++.+.++-....+...+.+. ..|..+...+...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 1123677788888889999988888776654222222 257888999999999999999998876554
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH------------HHHHHHHHH-Hc-CCCCChhhHHHHHHHHHhcCChHHHH-HHHHH
Q 010853 404 NIHDNYVYAAMIKGLCRSGKIHE------------AVHFLYELV-DS-GVTPNIVCYNVVIDGACKLSMKREAY-QILRE 468 (499)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~------------a~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~ 468 (499)
.+ ......|+...+..|..+. ..+++..-. .. .+...+.-|..|-.-+...|++..|- -+|+.
T Consensus 969 ~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 LK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp SC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 43 3456777777776665443 333433211 11 11212233555555566777776554 44565
Q ss_pred HHH
Q 010853 469 MRK 471 (499)
Q Consensus 469 m~~ 471 (499)
+.+
T Consensus 1047 ~~R 1049 (1139)
T 4fhn_B 1047 LSR 1049 (1139)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.06 E-value=3.5 Score=30.29 Aligned_cols=71 Identities=14% Similarity=0.092 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010853 406 HDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 478 (499)
Q Consensus 406 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 478 (499)
|+..+--.+..++.+..+ ..+++.+++++...+..-.....-.|.-++.+.|++++|.+..+.+.+ +.|+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 444444445555555543 234556666665543222233444445566666666666666666666 45543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.47 E-value=3 Score=28.42 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 356 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++++-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444444444555555555555555555555555554443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.20 E-value=3.7 Score=29.71 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=23.0
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
+..+-++.+...+..|++.+..+.+++|.+.+++..|.++|+-.+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555555554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.84 E-value=4.3 Score=29.43 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=36.2
Q ss_pred CcCHHhHHHHHHHHHhcCCh---hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 370 VADSTTYAIVIDGLCESNQL---DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.|+..+--.+..++.+..+. .++..+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 44555555555555555433 345556665554432212333444555666666666666666666654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.61 E-value=8.4 Score=40.41 Aligned_cols=143 Identities=13% Similarity=0.087 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC----C---------------
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----S--------------- 403 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--------------- 403 (499)
.++..+...+..+.+.++.... +.+...--.+..+|...|++++|.++|++.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3455566666666666554433 223333345566777788888888888765210 0
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 404 ---NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI----VCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 404 ---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
...-..-|..++..+-+.|.++.+.++-+..++....-+. ..|..+.+++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0001123667777788888888888877776654222121 2577778888888888888888877765433
Q ss_pred CHhHHHHHHHHhcccC
Q 010853 477 DAVTWRILDKLHGNRG 492 (499)
Q Consensus 477 ~~~~~~~l~~~~~~~g 492 (499)
-....+.|+...+..|
T Consensus 970 r~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQG 985 (1139)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3456666665555444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.40 E-value=9.6 Score=32.71 Aligned_cols=25 Identities=16% Similarity=-0.023 Sum_probs=13.5
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHH
Q 010853 160 SLVSYNSIVHGLCKHGGCMRAYQLL 184 (499)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~a~~~~ 184 (499)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4444555555555555555555544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.28 E-value=5.7 Score=28.74 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 356 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
+..+-++.+....+.|++.+....+++|.+.+|+..|.++++-++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.14 E-value=14 Score=31.96 Aligned_cols=22 Identities=5% Similarity=0.007 Sum_probs=11.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHH
Q 010853 53 TYSVLVRGVLRTRDVERANVLM 74 (499)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~ 74 (499)
.|.++..-|.+++++++|.+++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL 58 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDIL 58 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHH
Confidence 4444555555555555555543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.65 E-value=4.2 Score=37.06 Aligned_cols=101 Identities=8% Similarity=-0.163 Sum_probs=58.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhcc---CCCCCCchhh
Q 010853 52 LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP---QGKSVNEEFA 128 (499)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~ 128 (499)
.+...+...+.+.|+++.|...+.++..... +...-...+-.+++.+...+++..+...++++. ..+..++...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAI---STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT---CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 3566677777777777777777766655433 233445666777777777777777776666643 2222222211
Q ss_pred --HHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 129 --CGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 129 --~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
...-...+...+++..|...|-+....
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 111122234567777777777665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.48 E-value=5.6 Score=30.19 Aligned_cols=64 Identities=8% Similarity=0.027 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 269 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD-------AVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 269 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
+-.-+..+...|.++.|+-+.+.+.......|+ ..++..+.+++...+++..|...|++.+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 334455556666666666555543321100122 1244555666777777777777776655433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.28 E-value=8.2 Score=28.40 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=39.5
Q ss_pred CcCHHhHHHHHHHHHhcCC---hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 370 VADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.|+..+--.+..++.+..+ ..++..+++++...+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555556666666554 3356666666655433222333344555677777777777777777765
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.22 E-value=16 Score=31.65 Aligned_cols=170 Identities=17% Similarity=0.146 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH---HHHhccCCCCCchhhHHH
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL---YQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~ 343 (499)
.+|.++..-|.+.+++++|++++..-. ..+.+.|+...+.++. -+.....++++|......
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA----------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~r 99 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVS----------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 345566666666666666666655432 2344455555444332 133445566677666666
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHhh----CC--CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 344 VLRGLFRLRRVE-EAKEVFNCMLG----IG--VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 344 ll~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
++..+.....-+ .=..+.+.+.+ .| ..-|+.....+...|.+.+++.+|+..|= .+-.++...+..++.
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHH
Confidence 666655443211 11222222221 11 12245555666677777777777766662 122222244544443
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 417 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 417 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
-+...+...+ ++... ...+--|...++...|..+++...+
T Consensus 176 ew~~~~~~~e--------------~dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 176 EWYKQDESHT--------------APLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTSCGGG--------------HHHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCcc--------------HHHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333322111 11112 2233346667888888887777653
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.36 E-value=13 Score=33.82 Aligned_cols=97 Identities=11% Similarity=-0.056 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC---CCCCCccc--H
Q 010853 127 FACGHMIDSLCRSGRNHGASRVVYVMRKRG--LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF---GYLPSEHT--Y 199 (499)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 199 (499)
.+...+...|.+.|+++.|.+.|.++...- ...-...+-..++.+...+++..+...+.+.... +-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356678888888888888888888887652 2223456677778888888888888887776432 21121110 0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 200 KVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 200 ~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
..-...+...+++..|-..|-+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 111122344566666666665544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 499 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.26 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.24 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.2 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.19 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.17 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.02 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.01 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.66 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.66 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.64 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.63 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.58 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.56 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.48 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.44 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.44 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.33 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.32 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.3 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.27 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.19 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.17 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.14 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.11 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.08 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.02 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.01 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.94 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.93 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.83 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.67 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.67 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.63 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.52 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.51 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.32 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.3 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.77 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.55 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.52 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.08 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.68 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.26 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.8 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.31 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.6 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.87 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-22 Score=185.07 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=38.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCC
Q 010853 26 LAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 105 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (499)
+.+.|++++|++.|+++.+.. +-++.++..+..++.+.|++++|...+.++++.-|. +..++..+..++.+.|
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL------LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHhhhhc
Confidence 344555555555555554432 223444455555555555555555544444332111 2233444444444444
Q ss_pred CHhHHHHHHHhcc
Q 010853 106 YVNEVFRIAEDMP 118 (499)
Q Consensus 106 ~~~~a~~~~~~~~ 118 (499)
++++|+..+....
T Consensus 82 ~~~~A~~~~~~~~ 94 (388)
T d1w3ba_ 82 QLQEAIEHYRHAL 94 (388)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ccccccccccccc
Confidence 4444444444433
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=8.3e-23 Score=186.21 Aligned_cols=379 Identities=11% Similarity=0.049 Sum_probs=203.5
Q ss_pred HHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHH
Q 010853 101 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 180 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a 180 (499)
+.+.|++++|.+.++++.+..+ .+..++..+..++.+.|++++|...|+...+.... +..+|..+..++...|++++|
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcccccc
Confidence 3344444444444444443332 22334444444444455555555555544443211 234444444555555555555
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc
Q 010853 181 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 260 (499)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (499)
...+....+... .+..............+....+......... ...................+....+...+......
T Consensus 87 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 87 IEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQ-YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cccccccccccc-ccccccccccccccccccccccccccccccc-cccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 555544444221 1112222222222222333333333322221 11222223333333444444455555544444443
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhh
Q 010853 261 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 340 (499)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 340 (499)
.+ .+...+..+...+...|+++.|...++...+.. +.+...+..+...+...|++++|...+.+..... +.+...
T Consensus 165 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 239 (388)
T d1w3ba_ 165 QP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVV 239 (388)
T ss_dssp CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHH
T ss_pred Cc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh--hhHHHH
Confidence 32 244555556666666667777766666665543 3445566666666667777777776666654333 233445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
+..+...+.+.|++++|...|++..+.. +.+..++..+..++...|++++|.+.++......+ .+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHHHH
Confidence 5556666667777777777777766653 34556666677777777777777777776654432 355566677777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhcccCC
Q 010853 421 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHGNRGN 493 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 493 (499)
.|++++|++.|++..+..+. +..++..+..+|.+.|++++|...|++..+ +.|+ ...|..|..+|.+.||
T Consensus 318 ~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 77777777777777665322 455666677777777777777777777765 4554 5566777777766654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.1e-13 Score=121.60 Aligned_cols=270 Identities=13% Similarity=-0.028 Sum_probs=153.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCC
Q 010853 167 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 246 (499)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 246 (499)
....+.+.|++++|...|+++++... -+..+|..+..++...|+++.|...+++..+. .+.+...+..+...+...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLEL-KPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc-cccccccccccccccccccc
Confidence 34444555556666666555555321 13345555555555555555555555555432 12233344444444444555
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010853 247 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 326 (499)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 326 (499)
+++|.+.+........ +............. ..+.......+..+...+.+.++...+.
T Consensus 103 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 103 QRQACEILRDWLRYTP--AYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp HHHHHHHHHHHHHTST--TTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhcc--chHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 5555544444443321 11000000000000 0000001111222334455667777777
Q ss_pred HHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC
Q 010853 327 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 406 (499)
Q Consensus 327 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 406 (499)
+.+......++...+..+...+...|++++|...++...... +-+..++..+..+|...|++++|.+.++++.+..+.
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG- 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence 766555444556677777788888899999999998887754 446778888888889999999999999888765433
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------CCChhhHHHHHHHHHhcCChHHH
Q 010853 407 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV----------TPNIVCYNVVIDGACKLSMKREA 462 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~a 462 (499)
+..+|..+..+|.+.|++++|++.|++.++... ......|..+-.++...|+.+.+
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 566788888899999999999999988876311 11122455555566666666544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3e-13 Score=118.86 Aligned_cols=244 Identities=10% Similarity=-0.007 Sum_probs=134.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 010853 132 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 211 (499)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (499)
....+.+.|++++|...|+.+.+..+. +..+|..+..++...|++++|...+.+..+... -+...+..+...+...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence 344455666666666666666655322 345566666666666666666666666555321 133455555566666666
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 212 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 291 (499)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 291 (499)
+++|.+.++......... ...+........ ..+.......+..+...+...++...+.+
T Consensus 103 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAY-AHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHHHHHHTSTTT-GGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccch-HHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 666666666655321110 000000000000 00000111111222333445566666665
Q ss_pred HhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 010853 292 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 371 (499)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 371 (499)
.........+...+..+...+...|++++|+..+++.+... +.+...|..+..++...|++++|.+.|++..+.. +-
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 55433223456666677777777777777777777765443 2345566677777777778888877777776653 33
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhc
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVW 401 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (499)
+..++..+..+|.+.|++++|...|+++++
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566677777778888888888888777653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=2.1e-09 Score=95.13 Aligned_cols=200 Identities=14% Similarity=-0.021 Sum_probs=125.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHH
Q 010853 24 SALAITGEMDVAYKVFDEMRHCGVLPN----SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD 99 (499)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (499)
.++...|++++|++++++........+ ..++..+..++...|++++|...+.++++..+..+........+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344889999999999999887531111 2456778889999999999999998888766654333334456667777
Q ss_pred HHHcCCCHhHHHHHHHhccCC----C---CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC----CChhhHHHHH
Q 010853 100 SLCREGYVNEVFRIAEDMPQG----K---SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT----PSLVSYNSIV 168 (499)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~----p~~~~~~~l~ 168 (499)
.+...|++..+...+...... . .......+..+...+...|+++.+...+......... .....+....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 888888888888777664321 1 1111234455666777788888888888777654221 1223444555
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCC----C--CcccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 169 HGLCKHGGCMRAYQLLEEGIQFGYL----P--SEHTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
..+...++...+...+.+....... + ....+..+...+...|+++.|...++...
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 6666677777777666654432110 0 11233444555566666777766666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.4e-09 Score=93.95 Aligned_cols=213 Identities=6% Similarity=0.038 Sum_probs=115.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (499)
++.+...+.+.+.+++|+..++.+++..+. +...|+....++...| ++++|+..++...+.. +-+..+|..+...+
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhHHH
Confidence 334444444555555555555555555432 4455555555555544 3666666666665543 44566666666666
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC----
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ---- 388 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 388 (499)
.+.|++++|+..+.+++... +.+...|..+...+...|++++|+..++.+.+.. +.+...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 66666666666666655443 3345566666666666666666666666666654 3345555555555444443
Q ss_pred --hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHH
Q 010853 389 --LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGAC 454 (499)
Q Consensus 389 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 454 (499)
+++|...+..+++..+. +...|+.+...+... ..+++.+.++...+....+ +...+..++..|.
T Consensus 200 ~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 35566666665554433 455555554444333 3455566666555543222 2334444455443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=9.3e-09 Score=90.85 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=31.9
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCc------ccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 167 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSE------HTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
....+...|++++|.+++++..+.. |+. ..+..+...+...|++++|...+++..
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 78 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 78 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445556677777777776665532 221 234445556666666666666666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2e-09 Score=92.94 Aligned_cols=217 Identities=11% Similarity=0.064 Sum_probs=171.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCCchhhHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG-RIQEALNLLYQVMPQRGYSPGIVTYNAV 344 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l 344 (499)
...++.+...+.+.+..++|++.++++.+.. +-+...|+....++...+ ++++|+..+.+.+... +-+..+|..+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~ 118 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHR 118 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHH
Confidence 3456667777888999999999999999875 667888898888888876 5899999999987665 4567788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK- 423 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 423 (499)
...+.+.|++++|+..++++.+.. +.+...|..+..++...|++++|...++.+++.++. +...|+.+..++.+.+.
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred hHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHcccc
Confidence 899999999999999999999875 567899999999999999999999999999987655 67788887777766654
Q ss_pred -----HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHhcc
Q 010853 424 -----IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP-DAVTWRILDKLHGN 490 (499)
Q Consensus 424 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~ 490 (499)
+++|++.+.++++..+. +...|..+...+.. ...+++.+.++...+....+ +...+..+...|..
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 67899999999887543 67777777665544 44677888888887633222 34455566666543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=4.2e-09 Score=90.86 Aligned_cols=162 Identities=8% Similarity=-0.019 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHH-H
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG-L 312 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 312 (499)
|..++......|+.+.|..+++.+.+.........|...+..+.+.|+.+.|.++|+.+.+.. +.+...|...... +
T Consensus 102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--~~~~~~~~~~a~~e~ 179 (308)
T d2onda1 102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 333333333444444444444444333222222334444444444444455555554444332 1222222222211 1
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcC--HHhHHHHHHHHHhcCCh
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VVAD--STTYAIVIDGLCESNQL 389 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~ 389 (499)
...|+.+.|..+|+.++... +.+...|...+......|+++.|..+|++..+.. ..|. ...|...+..-...|+.
T Consensus 180 ~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~ 257 (308)
T d2onda1 180 YCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence 22344444555554444332 2233344444444445555555555555544332 1111 22344444444444555
Q ss_pred hhHHHHHHHH
Q 010853 390 DEAKRFWDDI 399 (499)
Q Consensus 390 ~~a~~~~~~~ 399 (499)
+.+..+++++
T Consensus 258 ~~~~~~~~r~ 267 (308)
T d2onda1 258 ASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=4.8e-09 Score=90.50 Aligned_cols=81 Identities=6% Similarity=-0.012 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHH
Q 010853 143 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 222 (499)
Q Consensus 143 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 222 (499)
++|..+|++..+...+.+...|...+......|+++.|..+|+.+.+.........|...+..+.+.|+++.|.++|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44555555544432222333444445555555555555555555544221111223444455555555555555555554
Q ss_pred H
Q 010853 223 L 223 (499)
Q Consensus 223 ~ 223 (499)
.
T Consensus 161 l 161 (308)
T d2onda1 161 R 161 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1.4e-08 Score=85.19 Aligned_cols=95 Identities=11% Similarity=-0.060 Sum_probs=50.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (499)
++..+..+|.+.|++++|...|++.++..+. +..+|..+..+|.+.|++++|+..|+++.+.. +.+..++..+..++
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHHH
Confidence 3444445555555555555555555544322 44555555555555566666665555555533 23344455555555
Q ss_pred HccCCHHHHHHHHHHHhc
Q 010853 313 LNVGRIQEALNLLYQVMP 330 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~ 330 (499)
...|++++|...+.+.++
T Consensus 116 ~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHh
Confidence 555555555555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=1.6e-08 Score=84.76 Aligned_cols=201 Identities=8% Similarity=-0.110 Sum_probs=139.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 345 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 345 (499)
..++..+..+|.+.|++++|+..|++..+.. +.+..+|..+..++.+.|++++|+..|.+.+... +.+..++..+.
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg 112 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRG 112 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHH
Confidence 3466777889999999999999999998865 5678999999999999999999999999988655 33456788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK-- 423 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-- 423 (499)
.++...|++++|...|+...+.. +.+......+..++.+.+..+.+..+..........+. .++ ++..+.....
T Consensus 113 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~ 188 (259)
T d1xnfa_ 113 IALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQ 188 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhh-HHHHHHHHHHHH
Confidence 89999999999999999998864 34555544455555666666665555555544332221 122 2233322222
Q ss_pred --HHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010853 424 --IHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 478 (499)
Q Consensus 424 --~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 478 (499)
.+.+...+...... .| ...+|..+...|...|++++|.+.|++..+ ..|+.
T Consensus 189 ~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 242 (259)
T d1xnfa_ 189 TLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 242 (259)
T ss_dssp HHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred HHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCC
Confidence 22222222221111 11 234677788899999999999999999987 45654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=1.2e-09 Score=95.79 Aligned_cols=230 Identities=7% Similarity=-0.068 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC--ChHHHHHHHHHHHhcCCCCCHhhHH-HHHHHHHhcCCHHHHHH
Q 010853 211 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK--NPTELLNVLVFMLQTQCQPDVITLN-TVINGFCKMGRIEEALK 287 (499)
Q Consensus 211 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~ 287 (499)
++++|+.+++.+.+ ..+.+...|.....++...+ +++++...+....+...+ +...+. .....+...+.++.|+.
T Consensus 88 ~~~~al~~~~~~l~-~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 88 LVKAELGFLESCLR-VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHH
Confidence 34444455554442 12223333443333333332 345555555555544322 333332 33355556677777777
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010853 288 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 367 (499)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (499)
.++.+.... +.+...|..+...+.+.|++++|...+.+.+.. .|+. ......+...+..+++...+......
T Consensus 166 ~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 166 FTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 777666654 456666777777777777766665444332211 1111 12223344556666677777766655
Q ss_pred CCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhH
Q 010853 368 GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN-IVCY 446 (499)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ 446 (499)
. +++...+..+...+...|+.++|...+.+....++. +..+|..+..++...|++++|.+.++++.+. .|+ ...|
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~ 313 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYL 313 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHH
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHH
Confidence 4 444555556666677778888888888877654432 4556777778888888888888888888776 343 3455
Q ss_pred HHHHHHHH
Q 010853 447 NVVIDGAC 454 (499)
Q Consensus 447 ~~l~~~~~ 454 (499)
..+...+.
T Consensus 314 ~~L~~~~~ 321 (334)
T d1dcea1 314 DDLRSKFL 321 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55554444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=9.1e-10 Score=96.54 Aligned_cols=108 Identities=6% Similarity=-0.045 Sum_probs=51.7
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC--ChhHHHHHHHHHHhCCCCCCcccHH-HHHHHHhcCCCHHHHH
Q 010853 140 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG--GCMRAYQLLEEGIQFGYLPSEHTYK-VLVEGLCGESDLEKAR 216 (499)
Q Consensus 140 ~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~ 216 (499)
|.+++|+.+++...+...+ +...|..+..++...+ ++++|...+..+.+... ++...+. .....+...+.++.|.
T Consensus 87 ~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHH
Confidence 3355566666665554322 4444544444444433 35566666666555321 1222222 2334444556666666
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHhccCChHHH
Q 010853 217 KVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 250 (499)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 250 (499)
..++.+... .+.+...|..+...+...|++++|
T Consensus 165 ~~~~~~i~~-~p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 165 AFTDSLITR-NFSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp HHHHTTTTT-TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHhcCHHHH
Confidence 666555532 233344455555555555554443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=6.4e-07 Score=70.45 Aligned_cols=131 Identities=11% Similarity=-0.099 Sum_probs=72.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 427 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 427 (499)
+...|+++.|++.|..+ .+|+..++..+..+|...|++++|.+.|++.++.++. +...|..+..+|.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHH
Confidence 44556666666666543 1345555566666666666666666666666555433 455566666666666666666
Q ss_pred HHHHHHHHHcCCC--------------CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 010853 428 VHFLYELVDSGVT--------------PN-IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRI 483 (499)
Q Consensus 428 ~~~~~~~~~~~~~--------------~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 483 (499)
++.|++....... ++ ..++..+..++.+.|++++|.+.++...+....|+......
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~ 160 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 160 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 6666665542100 00 12344455566667777777777766665444443434433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.5e-06 Score=68.20 Aligned_cols=124 Identities=12% Similarity=-0.012 Sum_probs=65.5
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhh
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 391 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 391 (499)
+...|+++.|++.|.++ .+|+..+|..+..++...|++++|++.|++..+.. +-+...|..+..+|.+.|++++
T Consensus 15 ~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 34445555555544431 12334444445555555555555555555555443 3344445555555555555555
Q ss_pred HHHHHHHHhcCCC--------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010853 392 AKRFWDDIVWPSN--------------IH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 441 (499)
Q Consensus 392 a~~~~~~~~~~~~--------------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 441 (499)
|...|++...... .+ ...++..+..++.+.|++++|.+.++........+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 5555554432110 00 12345567778888888888888888887765444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=6.4e-07 Score=76.03 Aligned_cols=170 Identities=9% Similarity=-0.087 Sum_probs=85.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCC----CC-CCchhh
Q 010853 54 YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG----KS-VNEEFA 128 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 128 (499)
|......|...+++++|...|.+..+-.....+...-..+|..+..+|.+.|++++|.+.++...+. +. .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 3344556677777777777777666654443222222346666677777777777776666654321 10 011223
Q ss_pred HHHHHHHHHh-cCChhhHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCc------
Q 010853 129 CGHMIDSLCR-SGRNHGASRVVYVMRKR----GLTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE------ 196 (499)
Q Consensus 129 ~~~l~~~~~~-~~~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 196 (499)
+..+...|.. .|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.|++..........
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 3344444433 46666666666554332 1110 0223455556666666666666666665543211111
Q ss_pred ccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 197 HTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
..+...+..+...|+++.|...+++..
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 112223334445555666655555554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=6.1e-07 Score=64.06 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=65.5
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 459 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (499)
...+...|++++|...|+++++..+. +...|..+..+|...|++++|++.+.+.++.+.. +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence 44566677777777777777665443 5666777777777777777777777777776533 666777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCH
Q 010853 460 REAYQILREMRKNGLNPDA 478 (499)
Q Consensus 460 ~~a~~~~~~m~~~g~~p~~ 478 (499)
++|+..+++..+ +.|+.
T Consensus 88 ~~A~~~~~~a~~--~~p~~ 104 (117)
T d1elwa_ 88 EEAKRTYEEGLK--HEANN 104 (117)
T ss_dssp HHHHHHHHHHHT--TCTTC
T ss_pred HHHHHHHHHHHH--hCCCC
Confidence 777777777776 44543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=1.6e-06 Score=73.57 Aligned_cols=201 Identities=11% Similarity=-0.055 Sum_probs=123.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCC----CchhhH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAG----KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYS----PGIVTY 341 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 341 (499)
......|...|++++|.+.|.+..+. +....-..+|..+..+|.+.|++++|...+.+.+....-. ....++
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 33456677777888887777766542 1101124567777788888888888888777654322111 113345
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHhhC----CCCc-CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCH------H
Q 010853 342 NAVLRGLF-RLRRVEEAKEVFNCMLGI----GVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN------Y 409 (499)
Q Consensus 342 ~~ll~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~ 409 (499)
..+...|. ..|++++|...+++..+. +.++ -..++..+...+...|++++|...++++......... .
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 55555554 358888888888876532 2111 1345677888888999999999999887654332211 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHh--cCChHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP----NIVCYNVVIDGACK--LSMKREAYQILREMR 470 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~ 470 (499)
.+...+..+...|+++.|...+++..+..+.. .......++.++.. .+.+++|+..|+.+.
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 23445556777889999998888887653211 12344556666654 345677777776553
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.1e-06 Score=62.63 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=69.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 424 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (499)
...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|...++.+++.++. +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence 455677788888888888877764 556777777888888888888888888888766544 667777888888888888
Q ss_pred HHHHHHHHHHHHcC
Q 010853 425 HEAVHFLYELVDSG 438 (499)
Q Consensus 425 ~~a~~~~~~~~~~~ 438 (499)
++|+..|++..+..
T Consensus 88 ~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.3e-06 Score=66.48 Aligned_cols=119 Identities=10% Similarity=-0.035 Sum_probs=86.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
.....+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|+++++..+. +..+|..+..++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence 34456778888888888888888875 557778888888888889999999999888876544 6678888888888899
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCChHHHHH
Q 010853 423 KIHEAVHFLYELVDSGVTPNIVCYNVVIDG--ACKLSMKREAYQ 464 (499)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~ 464 (499)
++++|.+.+++....... +...+..+..+ ....+.++++..
T Consensus 93 ~~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988888886432 34444444333 223333444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=3.8e-07 Score=72.75 Aligned_cols=99 Identities=14% Similarity=0.023 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHH
Q 010853 300 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 379 (499)
Q Consensus 300 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 379 (499)
|++..+......+.+.|++++|+..|.+.+... +.+...|..+..+|.+.|++++|+..|+...+.. +-+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence 555566666666777777777777776666544 3455566666666777777777777777766643 3345566666
Q ss_pred HHHHHhcCChhhHHHHHHHHhc
Q 010853 380 IDGLCESNQLDEAKRFWDDIVW 401 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~ 401 (499)
..+|...|++++|...|+++..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6777777777777777766543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2e-06 Score=65.32 Aligned_cols=104 Identities=12% Similarity=0.061 Sum_probs=87.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 010853 377 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 456 (499)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (499)
......|.+.|++++|...|+++++.++. +...|..+..+|...|++++|.+.|+++++.+.. +...|..+..++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHc
Confidence 33456788999999999999999987655 7889999999999999999999999999998633 678999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HhHHHHH
Q 010853 457 SMKREAYQILREMRKNGLNPD-AVTWRIL 484 (499)
Q Consensus 457 g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 484 (499)
|++++|...+++..+ +.|+ ...+..+
T Consensus 92 g~~~eA~~~~~~a~~--~~p~~~~~~~~l 118 (159)
T d1a17a_ 92 GKFRAALRDYETVVK--VKPHDKDAKMKY 118 (159)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--cCCCCHHHHHHH
Confidence 999999999999988 4465 3333333
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.48 E-value=1.1e-06 Score=70.08 Aligned_cols=100 Identities=12% Similarity=-0.047 Sum_probs=88.6
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHH
Q 010853 336 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 415 (499)
Q Consensus 336 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 415 (499)
|+...+......+.+.|++++|+..|.+..+.. +.+...|..+..+|.+.|++++|...++.+++..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 666777788889999999999999999998875 668889999999999999999999999999876544 677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 010853 416 KGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.+|...|++++|+..|+++.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998864
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=5.9e-07 Score=64.28 Aligned_cols=94 Identities=13% Similarity=0.143 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC---hhhHHHHHHHHhcCCCCCCH-HHHHHHHHHH
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDN-YVYAAMIKGL 418 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~ 418 (499)
.+++.+...+++++|++.|+.....+ +.+..++..+..++.+.++ +++|..+++++...+..|+. .+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34444555555555555555555543 3344555555555544332 23455555555443322221 2344455555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 010853 419 CRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~ 437 (499)
.+.|++++|++.|+++++.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 5555555555555555553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.44 E-value=0.00011 Score=60.90 Aligned_cols=219 Identities=10% Similarity=-0.068 Sum_probs=113.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 010853 237 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (499)
+...+...+++++|+++|++..+.| +...+..|...|.. ..+...+...+......+ +......+...+
T Consensus 8 lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----~~~a~~~l~~~~ 80 (265)
T d1ouva_ 8 LGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHLLGNLY 80 (265)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----ccchhhcccccc
Confidence 3334444445555555555444443 23333334444443 345566666665555433 222222222222
Q ss_pred H----ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHH
Q 010853 313 L----NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF----RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 384 (499)
Q Consensus 313 ~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (499)
. ...+.+.|...+...... +. ......+...+. .......+...+......+ +...+..|...+.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~a~~~-g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~ 153 (265)
T d1ouva_ 81 YSGQGVSQNTNKALQYYSKACDL-KY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 153 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT-TC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred ccccccchhhHHHHHHHhhhhhh-hh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhhhc
Confidence 2 234556666666554322 11 111112222222 1334556666666655533 4455555665555
Q ss_pred h----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-
Q 010853 385 E----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK- 455 (499)
Q Consensus 385 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 455 (499)
. ..+...+...++...+.+ +......+...|.. ..++++|+..|++..+.| ++..+..|...|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G 227 (265)
T d1ouva_ 154 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG 227 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred cCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcC
Confidence 4 345556666666665543 44445555555544 457888888888887775 44566666666664
Q ss_pred ---cCChHHHHHHHHHHHHCCCC
Q 010853 456 ---LSMKREAYQILREMRKNGLN 475 (499)
Q Consensus 456 ---~g~~~~a~~~~~~m~~~g~~ 475 (499)
..+.++|.+.|++..+.|..
T Consensus 228 ~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 228 EGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCccCHHHHHHHHHHHHHCcCH
Confidence 34678888888888777643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.37 E-value=2.2e-06 Score=60.48 Aligned_cols=88 Identities=11% Similarity=-0.031 Sum_probs=47.9
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 459 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (499)
...+.+.|++++|...+++++...+. +...|..+..++.+.|++++|+..|++.++..+. +...|..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence 33455555555555555555544332 4455555555555556666666666555554322 445555555555556666
Q ss_pred HHHHHHHHHH
Q 010853 460 REAYQILREM 469 (499)
Q Consensus 460 ~~a~~~~~~m 469 (499)
++|++.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=3.5e-06 Score=60.13 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCh-hhHHHHHHH
Q 010853 377 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPNI-VCYNVVIDG 452 (499)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 452 (499)
..+++.+...+++++|++.|++....++. +..++..+..++.+.++ +++|+.+|+++...+..|+. .+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 45777788888899999999988876554 66778888888876554 45688888888776544432 367778888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 010853 453 ACKLSMKREAYQILREMRKNGLNPDAVTWRILD 485 (499)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 485 (499)
|.+.|++++|++.|+++.+ +.|+..-...+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~ 112 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELE 112 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence 8899999999999999887 567655444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.32 E-value=0.00018 Score=59.52 Aligned_cols=96 Identities=7% Similarity=-0.073 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----cCChhhHHHHHHHHhcCCCCCCHHH
Q 010853 339 VTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYV 410 (499)
Q Consensus 339 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 410 (499)
..+..+...+.. ..+...+..+++...+.| +......+...|.. ..+++.|...|+...+.+ ++..
T Consensus 143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a 216 (265)
T d1ouva_ 143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 216 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred chhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHH
Confidence 334444444443 345556666666666544 34444445444443 457777777777776654 3445
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 010853 411 YAAMIKGLCR----SGKIHEAVHFLYELVDSGVT 440 (499)
Q Consensus 411 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~ 440 (499)
+..|...|.. ..+.++|.+.|++..+.|..
T Consensus 217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 5556666654 33677777777777776633
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.30 E-value=3e-06 Score=59.73 Aligned_cols=91 Identities=13% Similarity=0.007 Sum_probs=72.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
.....+.+.|++++|...|++..+.. +-+..+|..+..++.+.|++++|...++++.+..+. +..+|..+..+|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence 34556778888888888888888764 446778888888888888888888888888776544 6778888888888888
Q ss_pred CHHHHHHHHHHHH
Q 010853 423 KIHEAVHFLYELV 435 (499)
Q Consensus 423 ~~~~a~~~~~~~~ 435 (499)
++++|.+.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8888888888753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.27 E-value=0.00084 Score=56.66 Aligned_cols=135 Identities=12% Similarity=0.085 Sum_probs=74.1
Q ss_pred CHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 010853 90 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 169 (499)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 169 (499)
|..--..++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHH
Confidence 333344466677777777777777776543 3456677777777777777665332 5667777777
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC
Q 010853 170 GLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK 245 (499)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 245 (499)
.+........+ .+.......+......++..|-..|.++....+++.... ....+...++.++..|++.+
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~-~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG-LERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-STTCCHHHHHHHHHHHHTTC
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc-CCccchHHHHHHHHHHHHhC
Confidence 77766554332 222223334555556677777777888887777777652 23445556666777666643
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.3e-05 Score=57.99 Aligned_cols=93 Identities=9% Similarity=0.067 Sum_probs=48.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C-----hhhHHHHHH
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-N-----IVCYNVVID 451 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~-----~~~~~~l~~ 451 (499)
.+...+...|++++|...|++.++.++. +..+|..+..+|.+.|++++|++.++++++..... . ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 3444555556666666666555544432 45555555666666666666666665555421110 0 123444445
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010853 452 GACKLSMKREAYQILREMRK 471 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~ 471 (499)
.+...+++++|++.|++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 55555666666666655544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=2.1e-05 Score=60.07 Aligned_cols=102 Identities=11% Similarity=-0.061 Sum_probs=50.6
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC---------HHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCC
Q 010853 53 TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN---------NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV 123 (499)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 123 (499)
.+...+..+.+.|++++|...|.+.+...+........ ..+|+.+..+|.+.|++++|+..++.....++
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p- 93 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS- 93 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc-
Confidence 34455667777778888877777777665543222211 12233344444444444444444444444332
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 124 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
.++.++..+..++...|++++|...|+...+.
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 23334444444444444444444444444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=2.6e-05 Score=59.55 Aligned_cols=99 Identities=4% Similarity=-0.131 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cC-------------HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV-AD-------------STTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
..+......+.+.|++++|+..|.+..+.-.. +. ..+|+.+..+|.+.|++++|...++.++..++
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 34455566788899999999999888754111 00 13445566667777777777777777766544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 405 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
. +...|..+..+|...|++++|+..|++..+.+
T Consensus 94 ~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 94 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred c-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3 56666777777777777777777777776654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.14 E-value=0.0016 Score=54.92 Aligned_cols=48 Identities=4% Similarity=-0.044 Sum_probs=29.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 464 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 464 (499)
++..+.+.++......+++...+.| +....+++...|...++++.-.+
T Consensus 254 ~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 254 AVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHH
Confidence 4444455555555556665555444 34577888888888888654333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.11 E-value=5.9e-05 Score=56.31 Aligned_cols=123 Identities=11% Similarity=0.034 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
.+..-...+.+.|++.+|+..|.+....-.... ............. ....+|..+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~-------------~~~~~~~~~~~~~-------~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------EWDDQILLDKKKN-------IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------TCCCHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh-------------hhhhHHHHHhhhh-------HHHHHHhhHHHHHH
Confidence 444555667778888888888887765311000 0000000000000 02235677888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 010853 420 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 485 (499)
Q Consensus 420 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 485 (499)
+.|++++|++.+++.++.++ .+..+|..+..++...|++++|...|++..+ +.|+.......+
T Consensus 79 ~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l 141 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSY 141 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHH
T ss_pred Hhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 99999999999999888753 3778888888999999999999999998887 557544433333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.08 E-value=0.00012 Score=56.08 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=89.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 424 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (499)
.......|++++|.+.|......- +... +......+-+...-..+.. .....+..+..++...|++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 345677899999999999988741 1110 0000111111111111110 0234677888999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHhHHHHHHHHhc
Q 010853 425 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-----KNGLNPDAVTWRILDKLHG 489 (499)
Q Consensus 425 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~~~l~~~~~ 489 (499)
++|+..+++++..... +...|..++.+|.+.|+.++|++.|+++. +.|+.|...+-...-....
T Consensus 84 ~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il~ 152 (179)
T d2ff4a2 84 SAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILR 152 (179)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 9999999999988643 88899999999999999999999999974 4699999877555444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.02 E-value=7.6e-05 Score=56.78 Aligned_cols=111 Identities=9% Similarity=-0.137 Sum_probs=58.1
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHH
Q 010853 52 LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGH 131 (499)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 131 (499)
..+.-.+..+.+.|++.+|...|.+++...+............ .+. .....|+.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~-------------------~~~-------~~~~~~~N 69 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKA-------------------SES-------FLLAAFLN 69 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHH-------------------HHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhh-------------------cch-------hHHHHHHh
Confidence 3455667778888888888888888776654432221111000 000 00123333
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010853 132 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 189 (499)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 189 (499)
+..+|.+.|++++|+..++...+.... +..+|..+..++...|++++|...|..+.+
T Consensus 70 la~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 70 LAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555554322 444555555555555555555555555554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=4e-05 Score=55.27 Aligned_cols=95 Identities=9% Similarity=0.170 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-C-----HHHHHHHH
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-D-----NYVYAAMI 415 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~-----~~~~~~li 415 (499)
..+...+.+.|++++|+..|.+.++.+ +.+..++..+..+|...|+++.|...++++++..+.. . ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345556677777777777777777664 4466677777777777777777777777765422110 1 12566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 010853 416 KGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
..+...+++++|++.|++....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 7777778888888888777665
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.01 E-value=5.3e-05 Score=56.57 Aligned_cols=110 Identities=8% Similarity=-0.050 Sum_probs=56.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHH
Q 010853 54 YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 133 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 133 (499)
+..-+..+.+.|++.+|...|.+.+...+...... +......... ....++..+.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-~~~~~~~~~~------------------------~~~~~~~Nla 74 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-DQILLDKKKN------------------------IEISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-CHHHHHHHHH------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-hHHHHHhhhh------------------------HHHHHHhhHH
Confidence 44455566677777777777777666544332211 1110000000 0112344455
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010853 134 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 189 (499)
Q Consensus 134 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 189 (499)
.+|.+.|++++|++.++...+..+. +..+|..+..++...|++++|...|+...+
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555566666666666555555322 445555566666666666666666665555
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.94 E-value=0.00025 Score=53.75 Aligned_cols=63 Identities=5% Similarity=-0.070 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+|..+..+|.+.|++++|...++.++..++. +...|..+..++...|++++|...|+++.+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444555666666666666666666554432 55566666666666666666666666666553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.93 E-value=0.00011 Score=55.94 Aligned_cols=62 Identities=6% Similarity=-0.135 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.+..+..++.+.|++++|...++.+++..+. +...|..+..++...|++++|++.|++..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4444555555566666666666665554432 4455555556666666666666666655554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.00013 Score=55.56 Aligned_cols=99 Identities=8% Similarity=-0.070 Sum_probs=50.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhhccC---------C-ccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCc
Q 010853 56 VLVRGVLRTRDVERANVLMFKLWERMKEEED---------L-SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 125 (499)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 125 (499)
.....+...|++.+|...|.+.+...+.... . +.....|..+..++.+.|++++|+..++...+..+ .+
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~ 110 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SN 110 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hh
Confidence 3444556667777777666665543221100 0 01222344455555555555555555555555443 34
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 126 EFACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
..+|..+..++...|++++|.+.|+...+.
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 445555555555555555555555555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=8.4e-05 Score=56.92 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHH
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 152 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 152 (499)
.+...+.+.|++++|+..++.+....+ -+...|..++.++.+.|+..+|++.|+.+
T Consensus 72 ~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 72 AKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344444455555555555555444443 33444444555555555555555554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=1.2e-05 Score=73.51 Aligned_cols=92 Identities=3% Similarity=-0.143 Sum_probs=30.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (499)
.+..+...+.+.++.+.|...+....... ....+..+...+...|++++|...|++..+.. +.+...|+.+...+
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAILA 196 (497)
T ss_dssp ---------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 33344444444444444444433332211 01233344444444445555555444444432 33344444444444
Q ss_pred HccCCHHHHHHHHHHHh
Q 010853 313 LNVGRIQEALNLLYQVM 329 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~ 329 (499)
...|+..+|+..|.+.+
T Consensus 197 ~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44455554544444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=2.3e-05 Score=71.63 Aligned_cols=112 Identities=8% Similarity=-0.047 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
..+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...|+++.+..+. +...|+.|...+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 344444455555566666655555443321 1234555555666666666666666666554433 445566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 010853 419 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (499)
...|+..+|...|.+.+... +|-..++..|...+.+
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 66666666666666665543 3344555555555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.67 E-value=0.00013 Score=53.69 Aligned_cols=114 Identities=16% Similarity=0.124 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc----------CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 351 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES----------NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
.+.+++|...|+...+.. |.+..++..+..++... +.+++|...++++++.++. +..+|..+..+|..
T Consensus 10 ~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHH
Confidence 344555666665555543 34445555555444432 2345566666666654433 45556666666654
Q ss_pred cC-----------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 010853 421 SG-----------KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 474 (499)
Q Consensus 421 ~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 474 (499)
.| .+++|.+.|++..+. .|+...+...+..+ .+|.+++.+..+.|+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 43 357777888887775 45555554444333 346677777666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.67 E-value=9.1e-05 Score=60.71 Aligned_cols=123 Identities=11% Similarity=-0.005 Sum_probs=82.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCC
Q 010853 26 LAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 105 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (499)
..+.|++++|++.+++..+.. +.|...+..++..++..|++++|...+....+.-|. +...+..+...+...+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~------~~~~~~~l~~ll~a~~ 78 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE------YLPGASQLRHLVKAAQ 78 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHhcc
Confidence 357899999999999999874 457888999999999999999999988887765433 2334444444444444
Q ss_pred CHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 106 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 106 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
..+++..........+..++...+......+...|+.++|.++++.+.+.
T Consensus 79 ~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 79 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 44433322222112222233344444556677788999999888888776
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.63 E-value=3.6e-05 Score=63.16 Aligned_cols=120 Identities=8% Similarity=-0.051 Sum_probs=57.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 429 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 429 (499)
+.|++++|+..+++.++.. +.|...+..+...++..|++++|...++...+..+. +...+..+...+...+..+++..
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHHH
Confidence 4566666666666666654 445566666666666666666666666666544322 22233333333322222222211
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 430 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
-.......+-.++...+......+...|+.++|.+.++++.+
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 110000001111122223334445566666666666666654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.52 E-value=0.00013 Score=53.64 Aligned_cols=102 Identities=10% Similarity=-0.029 Sum_probs=78.9
Q ss_pred HHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 010853 383 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS----------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 452 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (499)
|-+.+.+++|...++...+..+. +..++..+..++... +.+++|+..|++.++.++. +..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence 44567799999999999887655 777888888887643 4568899999999987644 67788888888
Q ss_pred HHhcC-----------ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 010853 453 ACKLS-----------MKREAYQILREMRKNGLNPDAVTWRILDKLH 488 (499)
Q Consensus 453 ~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 488 (499)
|...| .+++|.+.|++..+ +.|+...+..-+..+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH
Confidence 87654 36889999999987 678877776655443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.00035 Score=46.89 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=51.4
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC-HHhHHHHHHHHHcCCCHhHHHHHHHhccCCCC
Q 010853 50 NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFANLVDSLCREGYVNEVFRIAEDMPQGKS 122 (499)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 122 (499)
+...+..++..+.+.|++.+|...+.+.++..+......++ ..++..+..++.+.|++++|++.++++.+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence 34456677888888888888888888888777665444443 34666677777777777777777777666553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.32 E-value=0.0022 Score=47.59 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=59.4
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC--
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNI-H----------DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-----GVTPN-- 442 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~-~----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-- 442 (499)
..+...|++++|...|++.++.... | ....|+.+..+|...|++++|.+.+++.+.. ...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3444556666666666666532111 1 1346777888888888888888888877642 11111
Q ss_pred ---hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 443 ---IVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 443 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
...+..+..+|...|++++|+..|++..+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12466677888899999999999888754
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.30 E-value=0.00055 Score=51.04 Aligned_cols=102 Identities=15% Similarity=-0.008 Sum_probs=57.8
Q ss_pred hhHHHH--HHHHhccCCHHHHHHHHHHHHHHhhhccCCcc------CHHhHHHHHHHHHcCCCHhHHHHHHHhccCC---
Q 010853 52 LTYSVL--VRGVLRTRDVERANVLMFKLWERMKEEEDLSV------NNAAFANLVDSLCREGYVNEVFRIAEDMPQG--- 120 (499)
Q Consensus 52 ~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 120 (499)
.+|..+ ...+.+.|++++|+..|.+.++..+..+...+ ....|+.+..++.+.|++++|...++...+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 355555 45566778899998888888876554432221 1345666677777777777776665554321
Q ss_pred ----CCC---CchhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010853 121 ----KSV---NEEFACGHMIDSLCRSGRNHGASRVVYVMR 153 (499)
Q Consensus 121 ----~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 153 (499)
... ....++..+..+|...|++++|.+.|++..
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 110 011234445555556666666666555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.01 Score=39.33 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
+++.+..++.+.|++++|++.++++++.
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.55 E-value=0.055 Score=36.73 Aligned_cols=138 Identities=16% Similarity=0.162 Sum_probs=66.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 358 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 358 (499)
.|.+++..+++.+... +.+..-|+.++.-....-+-+-..++++..-.-..+.| .++.....
T Consensus 15 dG~ve~Gveii~k~~~----ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~vv 76 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSVV 76 (161)
T ss_dssp TTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHHH
T ss_pred hhhHHhHHHHHHHHcc----cCCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHHHH
Confidence 4566666666666655 33444555555554455555555555544322221111 12222222
Q ss_pred HHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 359 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
..+-.+- .+...++..++.....|.-+.-.++++.+.+ +-++++...-.+..+|.+.|...++.+++.+..+.|
T Consensus 77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 2222111 1223334444555555666666666655544 334455555556666666666666666666666655
Q ss_pred CC
Q 010853 439 VT 440 (499)
Q Consensus 439 ~~ 440 (499)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 43
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.52 E-value=0.058 Score=38.13 Aligned_cols=110 Identities=4% Similarity=-0.033 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAV 428 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 428 (499)
|+++|..+|++..+.|.. .....|. .....+.++|...+++..+.+ +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 455666666666655521 1122222 223456667777777766554 33444445544443 34677788
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 010853 429 HFLYELVDSGVTPNIVCYNVVIDGACK----LSMKREAYQILREMRKNG 473 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 473 (499)
++|++..+.| ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 8888877765 33444555555554 356777888888877766
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.08 E-value=0.11 Score=35.30 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=94.8
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhh
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 391 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 391 (499)
+.-.|..++..+++.+..... +..-||.++--....-+-+-..++++.+-+. .| ...+++...
T Consensus 12 ~ildG~ve~Gveii~k~~~ss----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcccC----CccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHH
Confidence 344677777777777755433 3444555554444444555555555544321 12 123455555
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 392 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
....+-.+ ..+...++..++.+..+|+-+.-.++++.+.+.+ +|++...-.+..+|.+.|...++-+++.++.+
T Consensus 75 vv~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 75 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 55554443 2244556777888999999999999999977754 77888999999999999999999999999999
Q ss_pred CCCC
Q 010853 472 NGLN 475 (499)
Q Consensus 472 ~g~~ 475 (499)
.|++
T Consensus 149 ~G~K 152 (161)
T d1wy6a1 149 KGEK 152 (161)
T ss_dssp TTCH
T ss_pred HhHH
Confidence 9875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.68 E-value=0.2 Score=35.19 Aligned_cols=81 Identities=9% Similarity=0.002 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCC
Q 010853 352 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGK 423 (499)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 423 (499)
.+.++|..++++..+.| +......|...|.. ..+.++|.++|++..+.+ ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45566666666666655 33344444444433 345667777777776554 33344445545543 346
Q ss_pred HHHHHHHHHHHHHcC
Q 010853 424 IHEAVHFLYELVDSG 438 (499)
Q Consensus 424 ~~~a~~~~~~~~~~~ 438 (499)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 777777777777665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.26 E-value=0.16 Score=34.72 Aligned_cols=77 Identities=14% Similarity=0.076 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHH
Q 010853 406 HDNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 482 (499)
Q Consensus 406 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 482 (499)
+...+--.+..++.+.. +.++++.+|+++...+..-....+-.|.-+|.+.|++++|.+.++.+.+ +.|+..-..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~qA~ 110 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQVG 110 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHHHH
Confidence 34444444455555443 3456666676666543211123445555566677777777777777766 556544433
Q ss_pred HH
Q 010853 483 IL 484 (499)
Q Consensus 483 ~l 484 (499)
.|
T Consensus 111 ~L 112 (124)
T d2pqrb1 111 AL 112 (124)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=1.2 Score=38.98 Aligned_cols=397 Identities=10% Similarity=-0.018 Sum_probs=191.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHh--ccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHc
Q 010853 26 LAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL--RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 103 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (499)
..++|+...+.++...+... | ...|-..-..-. ......+... ++++.+ +.+.....-...+..+.+
T Consensus 16 a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~----Fl~~~p---~~P~~~~lr~~~l~~L~~ 84 (450)
T d1qsaa1 16 AWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTN----FVRANP---TLPPARTLQSRFVNELAR 84 (450)
T ss_dssp HHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHH----HHHHCT---TCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHH----HHHHCC---CChhHHHHHHHHHHHHHh
Confidence 37888999888888887432 3 233333322222 2334444433 444332 333333333445667788
Q ss_pred CCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHH--H
Q 010853 104 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA--Y 181 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a--~ 181 (499)
.+++++.+..+.. . +.+...-.....+....|+.+.|...+..+-..|.. .+..+..+...+.+.|..... .
T Consensus 85 ~~~w~~~~~~~~~----~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~~lt~~~~~ 158 (450)
T d1qsaa1 85 REDWRGLLAFSPE----K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYL 158 (450)
T ss_dssp TTCHHHHHHHCCS----C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred ccCHHHHHHhccC----C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCCCCHHHHH
Confidence 8888765544321 1 133444445667777888888888887777666533 444555555555544433221 1
Q ss_pred HHHHHHHhCC-----------CCCCc-ccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc--cCCh
Q 010853 182 QLLEEGIQFG-----------YLPSE-HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL--IKNP 247 (499)
Q Consensus 182 ~~~~~~~~~~-----------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~ 247 (499)
+-+..+...| +.++. ......+..... ...+.... .. ...+......+..++.+ ..+.
T Consensus 159 ~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~---~~--~~~~~~~~~~~~~~l~rla~~d~ 230 (450)
T d1qsaa1 159 ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFA---RT--TGATDFTRQMAAVAFASVARQDA 230 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHH---HH--SCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHH---hc--CCCChhhhHHHHHHHHHHhccCh
Confidence 1122221111 11111 111111111111 11111111 11 11122222222222222 3466
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHH----HHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 010853 248 TELLNVLVFMLQTQCQPDVITLNTVI----NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 323 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 323 (499)
+.+...+......... +...+..+- ......+..+.+...+....... .+.......+......+++..+..
T Consensus 231 ~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~w~~~~al~~~~~~~~~~ 306 (450)
T d1qsaa1 231 ENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS---QSTSLIERRVRMALGTGDRRGLNT 306 (450)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc---cchHHHHHHHHHHHHcCChHHHHH
Confidence 6677776666554322 222222222 22223455666766666665543 344444444445556677777777
Q ss_pred HHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCCh-hhHHHHHHHHhcC
Q 010853 324 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL-DEAKRFWDDIVWP 402 (499)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 402 (499)
.+.. +... ......-.--+..++...|+.+.|...|..+... ++ |-..+.+ .+.|.. .-.. ...
T Consensus 307 ~~~~-l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~~~~------~~~ 371 (450)
T d1qsaa1 307 WLAR-LPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAA-QRIGEEYELKI------DKA 371 (450)
T ss_dssp HHHH-SCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHH-HHTTCCCCCCC------CCC
T ss_pred HHHh-cCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHH-HHcCCCCCCCc------CCC
Confidence 6665 3221 1112233344556677777777777777777542 22 3222221 122211 0000 000
Q ss_pred CCCCC-HH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 403 SNIHD-NY---VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 403 ~~~~~-~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
...+. .. .-..-+..+...|....|...+..+... .+......+.....+.|.++.|+....+.
T Consensus 372 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 00000 00 0112345667788899998888887653 24556667777788889988888776655
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=1.9 Score=37.57 Aligned_cols=338 Identities=13% Similarity=0.053 Sum_probs=183.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHH
Q 010853 56 VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS 135 (499)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 135 (499)
..+..+.+.+++..... ..+ ..+.+...-.....+....|+.++|.+.+..+-..|. ..+..+..+...
T Consensus 77 ~~l~~L~~~~~w~~~~~-------~~~---~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~ 145 (450)
T d1qsaa1 77 RFVNELARREDWRGLLA-------FSP---EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSV 145 (450)
T ss_dssp HHHHHHHHTTCHHHHHH-------HCC---SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHH-------hcc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 34566777777765432 121 2233455555677778888888888887776655443 233455556655
Q ss_pred HHhcCChhhH--HHHHHHHHhcC-----------CCCCh-hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHH
Q 010853 136 LCRSGRNHGA--SRVVYVMRKRG-----------LTPSL-VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV 201 (499)
Q Consensus 136 ~~~~~~~~~A--~~~~~~~~~~g-----------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (499)
+...|.+... .+-+..+...| +.++. ......+.... +...+...... ..++......
T Consensus 146 ~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~~-----~~~~~~~~~~ 217 (450)
T d1qsaa1 146 WRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQM 217 (450)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHHhc-----CCCChhhhHH
Confidence 5555443321 12222222221 11111 11222222221 12222222111 1122222222
Q ss_pred HHHHHhc--CCCHHHHHHHHHHHHhCCCCCchh---hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 010853 202 LVEGLCG--ESDLEKARKVLQFMLSKKDVDRTR---ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGF 276 (499)
Q Consensus 202 l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 276 (499)
+..++.+ ..+.+.+..++............. ....+...+...+..+.+...+......+. +.......+...
T Consensus 218 ~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~a 295 (450)
T d1qsaa1 218 AAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMA 295 (450)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHH
Confidence 3333322 357788888888876543333222 222233333445667788887777766543 444445556666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHH
Q 010853 277 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 356 (499)
Q Consensus 277 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 356 (499)
...+++..+...+..+.... .......--+..++...|+.++|...|..... .+ +|-..+.+ .+.|..-.
T Consensus 296 l~~~~~~~~~~~~~~l~~~~--~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~---~fYG~LAa-~~Lg~~~~ 365 (450)
T d1qsaa1 296 LGTGDRRGLNTWLARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR---GFYPMVAA-QRIGEEYE 365 (450)
T ss_dssp HHHTCHHHHHHHHHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC---SHHHHHHH-HHTTCCCC
T ss_pred HHcCChHHHHHHHHhcCccc--ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CC---ChHHHHHH-HHcCCCCC
Confidence 77899999999998886532 23344555677888899999999999988542 12 34444432 23332100
Q ss_pred HHHHHHHHhhCCC--CcCHH----hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010853 357 AKEVFNCMLGIGV--VADST----TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 430 (499)
Q Consensus 357 a~~~~~~~~~~~~--~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 430 (499)
+....+ .+... .-..-+..+...|....|...|..+... .+......+.....+.|.++.|+..
T Consensus 366 -------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a 435 (450)
T d1qsaa1 366 -------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQA 435 (450)
T ss_dssp -------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHH
Confidence 000000 00100 0112345677889999999999888743 2455667778888899999999987
Q ss_pred HHHH
Q 010853 431 LYEL 434 (499)
Q Consensus 431 ~~~~ 434 (499)
..+.
T Consensus 436 ~~~~ 439 (450)
T d1qsaa1 436 TIAG 439 (450)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.31 E-value=0.5 Score=32.19 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=39.9
Q ss_pred cCHHhHHHHHHHHHhcC---ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 371 ADSTTYAIVIDGLCESN---QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 371 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
++..+--....++.+.. +.+++..+++++.+.++......+-.|.-+|.+.|++++|.+.++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44455555555555543 34567777777765432211234555666777777777777777777765
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.60 E-value=0.74 Score=29.43 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=21.8
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
++.+-+..+...+..|++.+..+.+++|.+.+++..|.++|+-.+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555554444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.87 E-value=1.5 Score=27.96 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 426 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
++.+-++.+...++-|++....+.++||.+.+++..|.++++-.+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555443
|