Citrus Sinensis ID: 010889

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
MGKMPLFALFKNTGNIFRKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA
cccccHHHHHHccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
cccccHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHccccccEEEcc
mgkmplfalfkntgnifrkdeigLEIAQIALPATLalaadpiaslvdtafigqigpVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEAHEEeklekgfaTSEEMEELISEVECKTMTLNNISAKVEARherkhipsassALVIGSVLGLIQAFFVIAYAKpilnymgvnsdspmikpaQQYLTLRSLGAPAVLLSLALQGIFrgfkdtktpfyATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIeevdllppsskdlkfgqfLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLvglpfssrlftkDLKVLQLIGvgipfiavtqpinalafvfdginfgasdfaysAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLrigsgsgpwsflka
MGKMPLFALFKNTGNIFRKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVttslvaeedtikrltveaheeeklekgfatseEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRigsgsgpwsflka
MGKMPLFALFKNTGNIFRKDEIGLEiaqialpatlalaadpiaSLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEAHEEEKLEKGFATSeemeeliseveCKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHvlqlsvvlglvltvnllvglPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFaysaysmvsvavvsILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA
*****LFALFKNTGNIFRKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTV************************VECKTMTLNNI****************SSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPW*****
****PLF**FKNTGNIFRKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNIS********RKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA
MGKMPLFALFKNTGNIFRKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA
**KMPLFALFKNTGNIFRKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
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MGKMPLFALFKNTGNIFRKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSxxxxxxxxxxxxxxxxxxxxxEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSFLKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query498 2.2.26 [Sep-21-2011]
Q9SYD6515 MATE efflux family protei yes no 0.993 0.961 0.652 1e-179
Q9SFB0526 MATE efflux family protei no no 0.991 0.939 0.555 1e-155
Q9SVE7560 MATE efflux family protei no no 0.913 0.812 0.422 1e-101
Q84K71521 MATE efflux family protei no no 0.879 0.840 0.450 1e-100
Q8W4G3559 MATE efflux family protei no no 0.819 0.729 0.252 1e-14
Q58119450 Uncharacterized transport yes no 0.662 0.733 0.243 2e-12
Q945F0543 Enhanced disease suscepti no no 0.783 0.718 0.229 2e-11
P28303459 DNA-damage-inducible prot N/A no 0.624 0.677 0.242 1e-10
P76352495 Uncharacterized transport N/A no 0.706 0.711 0.235 2e-10
Q4L8N9452 Multidrug export protein yes no 0.612 0.674 0.235 7e-06
>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2 Back     alignment and function desciption
 Score =  629 bits (1621), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 329/504 (65%), Positives = 407/504 (80%), Gaps = 9/504 (1%)

Query: 3   KMPLFALFKNTGNIFRKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAV 62
           + PL+  F +  ++ + DE+GLEIA+IALPA LAL ADPIASLVDTAFIGQIGPVELAAV
Sbjct: 13  RNPLYIFFSDFRSVLKFDELGLEIARIALPAALALTADPIASLVDTAFIGQIGPVELAAV 72

Query: 63  GVSIAIFNQVSRITIFPLVSVTTSLVAEEDTI--KRLTVEAHEEEKLEKGFAT-SEEMEE 119
           GVSIA+FNQVSRI IFPLVS+TTS VAEED    ++ TV  H+E  +E G    +EE  E
Sbjct: 73  GVSIALFNQVSRIAIFPLVSITTSFVAEEDACSSQQDTVRDHKE-CIEIGINNPTEETIE 131

Query: 120 LISEVECKTM-----TLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKP 174
           LI E    ++     T ++I +  +   ++++IPSASSAL+IG VLGL QA F+I+ AKP
Sbjct: 132 LIPEKHKDSLSDEFKTSSSIFSISKPPAKKRNIPSASSALIIGGVLGLFQAVFLISAAKP 191

Query: 175 ILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLA 234
           +L++MGV  DSPM++P+Q+YL+LRSLGAPAVLLSLA QG+FRGFKDT TP +AT++GD+ 
Sbjct: 192 LLSFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVT 251

Query: 235 NVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKN 294
           N+ILDPIFIF+F  GV+GAA AHVISQYL+  ILLWKL+ +VD+   S+K L+F +F+KN
Sbjct: 252 NIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKHLQFCRFMKN 311

Query: 295 GFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILAS 354
           GFLL++RVIAVTFCVTL+ASLAAR+GSTSMAAFQVCLQ+WLATSLLADG AVA Q ILAS
Sbjct: 312 GFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILAS 371

Query: 355 AFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFI 414
           AF KKDY +A   AS VLQL +VLG VL V L  GL F +R+FTKD KVL LI +G+PF+
Sbjct: 372 AFAKKDYKRAAATASRVLQLGLVLGFVLAVILGAGLHFGARVFTKDDKVLHLISIGLPFV 431

Query: 415 AVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMY 474
           A TQPINALAFVFDG+NFGASDF Y+A S+V VA+VSILCL  LSS+HG++G+W  L++Y
Sbjct: 432 AGTQPINALAFVFDGVNFGASDFGYAAASLVMVAIVSILCLLFLSSTHGFIGLWFGLTIY 491

Query: 475 MSLRAIAGFLRIGSGSGPWSFLKA 498
           MSLRA  GF RIG+G+GPWSFL++
Sbjct: 492 MSLRAAVGFWRIGTGTGPWSFLRS 515
Citrate transporter critical for aluminum tolerance. Responsible for citrate exudation into the rhizosphere to protect roots from aluminum toxicity.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2 Back     alignment and function description
>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4G3|MATE4_ARATH MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1 Back     alignment and function description
>sp|Q58119|Y709_METJA Uncharacterized transporter MJ0709 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0709 PE=3 SV=1 Back     alignment and function description
>sp|Q945F0|EDS5_ARATH Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1 Back     alignment and function description
>sp|P28303|DINF_ECOLI DNA-damage-inducible protein F OS=Escherichia coli (strain K12) GN=dinF PE=2 SV=1 Back     alignment and function description
>sp|P76352|YEEO_ECOLI Uncharacterized transporter YeeO OS=Escherichia coli (strain K12) GN=yeeO PE=3 SV=3 Back     alignment and function description
>sp|Q4L8N9|MEPA_STAHJ Multidrug export protein MepA OS=Staphylococcus haemolyticus (strain JCSC1435) GN=mepA PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
297739688507 unnamed protein product [Vitis vinifera] 0.987 0.970 0.749 0.0
359481819 977 PREDICTED: MATE efflux family protein 1 0.987 0.503 0.749 0.0
425875109502 multi drugs and toxic compounds exclusio 0.991 0.984 0.706 0.0
224137998486 predicted protein [Populus trichocarpa] 0.971 0.995 0.734 0.0
449448721521 PREDICTED: MATE efflux family protein 1- 0.991 0.948 0.697 0.0
225435446513 PREDICTED: MATE efflux family protein 1 0.993 0.964 0.700 0.0
224104145493 predicted protein [Populus trichocarpa] 0.967 0.977 0.702 0.0
356557727545 PREDICTED: MATE efflux family protein 1- 0.987 0.902 0.673 0.0
343761168553 multidrug resistance pump [Glycine max] 0.995 0.896 0.663 0.0
356557725552 PREDICTED: MATE efflux family protein 1- 0.991 0.894 0.664 0.0
>gi|297739688|emb|CBI29870.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/502 (74%), Positives = 430/502 (85%), Gaps = 10/502 (1%)

Query: 1   MGKMPLFALFKNTGNIFRKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELA 60
           MGK+PL  +F++T N+F+KDE+GLEIAQIA PA LAL ADPIASL+DTAFIG IG VELA
Sbjct: 12  MGKVPLSVIFRDTRNVFKKDELGLEIAQIAFPAALALTADPIASLIDTAFIGHIGAVELA 71

Query: 61  AVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEAHEEEKLEKGFATSEEMEEL 120
           AVGVSIA+FNQVSRI IFPLVS+TTS VAEEDT+ R T      E LEKG A   EMEEL
Sbjct: 72  AVGVSIAVFNQVSRIAIFPLVSITTSFVAEEDTVGRRT-----NENLEKGLAIDNEMEEL 126

Query: 121 ISEVEC----KTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPIL 176
           I  ++      + T+NN +  +E  HER+HIPSASSALVIG VLGLIQA F+I  AK IL
Sbjct: 127 IPHIDSMHNSPSRTVNN-TKNMEFEHERRHIPSASSALVIGGVLGLIQALFLIFSAKSIL 185

Query: 177 NYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANV 236
           N+MGVNS SPM+ PA QYLTLRSLGAPAVLLSLA+QG+FRGFKDTKTP YATILGD+AN+
Sbjct: 186 NFMGVNSGSPMLAPAMQYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATILGDVANI 245

Query: 237 ILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGF 296
           ILDPI +F+F  GVSGAAIAHVISQYLIS+ILLW+L+ +VDLLPPS KDL+ G+FL+NG 
Sbjct: 246 ILDPILMFVFRLGVSGAAIAHVISQYLISVILLWRLMRKVDLLPPSIKDLQLGRFLRNGS 305

Query: 297 LLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAF 356
           LL+VRVIAVTFCVTLAASLAAR GSTSMAAFQVCLQIWLATSLLADGLAVA Q ILASAF
Sbjct: 306 LLLVRVIAVTFCVTLAASLAARLGSTSMAAFQVCLQIWLATSLLADGLAVAGQAILASAF 365

Query: 357 VKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAV 416
            KKDYDKAT  AS VLQL +VLGLVL+V LLV L ++SR+FTKD+ VLQL+ +GIPF+AV
Sbjct: 366 AKKDYDKATATASRVLQLGLVLGLVLSVFLLVVLQYASRVFTKDVNVLQLMNLGIPFVAV 425

Query: 417 TQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMS 476
           TQPINALAFVFDG+NFGASDFAYSA SMV VA+VSILCLFILSSS G++GIW+ALS+YMS
Sbjct: 426 TQPINALAFVFDGVNFGASDFAYSACSMVLVAIVSILCLFILSSSLGFIGIWIALSIYMS 485

Query: 477 LRAIAGFLRIGSGSGPWSFLKA 498
           LR ++GF RI +GSGPWSFL+A
Sbjct: 486 LRTMSGFWRIWTGSGPWSFLRA 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|425875109|dbj|BAM68467.1| multi drugs and toxic compounds exclusion protein [Eucalyptus camaldulensis] Back     alignment and taxonomy information
>gi|224137998|ref|XP_002322704.1| predicted protein [Populus trichocarpa] gi|222867334|gb|EEF04465.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449448721|ref|XP_004142114.1| PREDICTED: MATE efflux family protein 1-like [Cucumis sativus] gi|449502611|ref|XP_004161692.1| PREDICTED: MATE efflux family protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225435446|ref|XP_002285445.1| PREDICTED: MATE efflux family protein 1 [Vitis vinifera] gi|297746319|emb|CBI16375.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224104145|ref|XP_002313336.1| predicted protein [Populus trichocarpa] gi|222849744|gb|EEE87291.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356557727|ref|XP_003547163.1| PREDICTED: MATE efflux family protein 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|343761168|gb|AEM55566.1| multidrug resistance pump [Glycine max] Back     alignment and taxonomy information
>gi|356557725|ref|XP_003547162.1| PREDICTED: MATE efflux family protein 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
TAIR|locus:2008236515 AT1G51340 [Arabidopsis thalian 0.989 0.957 0.573 8.6e-143
TAIR|locus:2077477526 FRD3 "FERRIC REDUCTASE DEFECTI 0.989 0.937 0.491 9.9e-126
TAIR|locus:2057135521 AT2G38330 "AT2G38330" [Arabido 0.706 0.675 0.426 3.1e-87
TAIR|locus:2121783560 AT4G38380 [Arabidopsis thalian 0.710 0.632 0.423 1e-84
UNIPROTKB|P28303459 dinF "DinF MATE Transporter" [ 0.692 0.751 0.224 4.8e-16
TAIR|locus:2050140559 AT2G21340 [Arabidopsis thalian 0.714 0.636 0.230 1e-14
UNIPROTKB|Q8E8P4455 dinF "DNA damage-inducible mul 0.413 0.452 0.263 8.1e-14
TIGR_CMR|SO_4617455 SO_4617 "DNA-damage-inducible 0.413 0.452 0.263 8.1e-14
UNIPROTKB|Q0BYJ3437 HNE_2771 "Putative DNA-damage- 0.401 0.457 0.257 9e-13
UNIPROTKB|Q9KVQ1454 VC_0090 "DNA-damage-inducible 0.668 0.733 0.226 2e-12
TAIR|locus:2008236 AT1G51340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1396 (496.5 bits), Expect = 8.6e-143, P = 8.6e-143
 Identities = 288/502 (57%), Positives = 357/502 (71%)

Query:     5 PLFALFKNTGNIFRKDEIGLEXXXXXXXXXXXXXXXXXXSLVDTAFIGQIGPVELAAVGV 64
             PL+  F +  ++ + DE+GLE                  SLVDTAFIGQIGPVELAAVGV
Sbjct:    15 PLYIFFSDFRSVLKFDELGLEIARIALPAALALTADPIASLVDTAFIGQIGPVELAAVGV 74

Query:    65 SIAIFNQVSRITIFPLVSVTTSLVAEEDTI--KRLTVEAHEEEKLEKGFATSXXXXXXXX 122
             SIA+FNQVSRI IFPLVS+TTS VAEED    ++ TV  H+E  +E G            
Sbjct:    75 SIALFNQVSRIAIFPLVSITTSFVAEEDACSSQQDTVRDHKE-CIEIGINNPTEETIELI 133

Query:   123 XXXCKTM------TLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPIL 176
                 K        T ++I +  +   ++++IPSASSAL+IG VLGL QA F+I+ AKP+L
Sbjct:   134 PEKHKDSLSDEFKTSSSIFSISKPPAKKRNIPSASSALIIGGVLGLFQAVFLISAAKPLL 193

Query:   177 NYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANV 236
             ++MGV  DSPM++P+Q+YL+LRSLGAPAVLLSLA QG+FRGFKDT TP +AT++GD+ N+
Sbjct:   194 SFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNI 253

Query:   237 ILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGF 296
             ILDPIFIF+F  GV+GAA AHVISQYL+  ILLWKL+ +VD+   S+K L+F +F+KNGF
Sbjct:   254 ILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKHLQFCRFMKNGF 313

Query:   297 LLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAF 356
             LL++RVIAVTFCVTL+ASLAAR+GSTSMAAFQVCLQ+WLATSLLADG AVA Q ILASAF
Sbjct:   314 LLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASAF 373

Query:   357 VKKDYDKATTIASHXXXXXXXXXXXXXXXXXXXXPFSSRLFTKDLKVLQLIGVGIPFIAV 416
              KKDY +A   AS                      F +R+FTKD KVL LI +G+PF+A 
Sbjct:   374 AKKDYKRAAATASRVLQLGLVLGFVLAVILGAGLHFGARVFTKDDKVLHLISIGLPFVAG 433

Query:   417 TQPINALAFVFDGINFGASDFXXXXXXXXXXXXXXILCLFILSSSHGYVGIWVALSMYMS 476
             TQPINALAFVFDG+NFGASDF              ILCL  LSS+HG++G+W  L++YMS
Sbjct:   434 TQPINALAFVFDGVNFGASDFGYAAASLVMVAIVSILCLLFLSSTHGFIGLWFGLTIYMS 493

Query:   477 LRAIAGFLRIGSGSGPWSFLKA 498
             LRA  GF RIG+G+GPWSFL++
Sbjct:   494 LRAAVGFWRIGTGTGPWSFLRS 515
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
TAIR|locus:2077477 FRD3 "FERRIC REDUCTASE DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057135 AT2G38330 "AT2G38330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121783 AT4G38380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P28303 dinF "DinF MATE Transporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TAIR|locus:2050140 AT2G21340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8E8P4 dinF "DNA damage-inducible multidrug and toxin efflux protein DinF" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4617 SO_4617 "DNA-damage-inducible protein F" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q0BYJ3 HNE_2771 "Putative DNA-damage-inducible protein F" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVQ1 VC_0090 "DNA-damage-inducible protein F" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SYD6MATE1_ARATHNo assigned EC number0.65270.99390.9611yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-113
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 6e-63
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 1e-50
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 3e-43
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 4e-34
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-30
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 1e-28
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 3e-27
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-26
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 5e-25
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 6e-22
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-20
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 2e-19
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-19
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 3e-18
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 7e-17
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 1e-16
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 1e-15
PRK10367441 PRK10367, PRK10367, DNA-damage-inducible SOS respo 2e-14
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-14
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 4e-14
pfam01554161 pfam01554, MatE, MatE 4e-10
pfam01554161 pfam01554, MatE, MatE 6e-10
PRK10189478 PRK10189, PRK10189, MATE family multidrug exporter 7e-09
PRK09575453 PRK09575, vmrA, multidrug efflux pump VmrA; Review 5e-08
cd13148441 cd13148, MATE_like_3, Uncharacterized subfamily of 7e-07
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 3e-06
pfam03023452 pfam03023, MVIN, MviN-like protein 4e-06
COG0728518 COG0728, MviN, Uncharacterized membrane protein, p 1e-05
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-05
cd13123420 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of 7e-05
TIGR01695502 TIGR01695, mviN, integral membrane protein MviN 1e-04
COG0534 455 COG0534, NorM, Na+-driven multidrug efflux pump [D 3e-04
TIGR02900 488 TIGR02900, spore_V_B, stage V sporulation protein 4e-04
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 7e-04
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 0.001
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 0.001
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 0.002
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 0.004
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information 
 Score =  339 bits (872), Expect = e-113
 Identities = 155/470 (32%), Positives = 225/470 (47%), Gaps = 55/470 (11%)

Query: 25  EIAQIALPATLALAADPIASLVDTAFIGQIG-PVELAAVGVSIAIFNQVSRITIFPLVSV 83
           EI  +ALPA L+    P+  LVDTA +G +G    L AV +   IFN +  +  F  +  
Sbjct: 4   EILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTLFWLFGFLRMG- 62

Query: 84  TTSLVAEEDTIKRLTVEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHE 143
           TT LVA+                                               + A   
Sbjct: 63  TTGLVAQ----------------------------------------------ALGAGDR 76

Query: 144 RKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAP 203
            + I     AL++   +GL+            L  +G  + + +   A+QYL +R LGAP
Sbjct: 77  EEAIALLVRALLLALAIGLLLILLQSPLLALALLLLG--ASAAVAALARQYLRIRILGAP 134

Query: 204 AVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYL 263
           AVLL+    G FRG +DT+TP    I+G++ N++LDP+F+F   WGV+GAA+A VI+QYL
Sbjct: 135 AVLLNYVATGWFRGLQDTRTPLILQIVGNVVNIVLDPLFVFGLGWGVAGAALATVIAQYL 194

Query: 264 ISLILLWKLIEEVDLLPPSS-----KDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAAR 318
            +L+ LW L   V LL  S            +  K    + +R +A+        +LAAR
Sbjct: 195 GALLGLWLLRRRVRLLGKSLSRRLPSKAALKRLFKLNRDIFIRTLALLAAFLFFTALAAR 254

Query: 319 QGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVL 378
            G   +AA Q+ LQ WL +S   DG A AA+ ++  A    D   A  +A  +LQ  + L
Sbjct: 255 LGDVILAANQILLQFWLLSSYFLDGFAYAAEALVGRALGAGDRKAARRVARRLLQWGLGL 314

Query: 379 GLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFA 438
           G++L +   +G     RLFT D  VL L    +P++A+  PI ALAFV DGI  GA+D  
Sbjct: 315 GVLLALLFFLGGEPIIRLFTDDPAVLALAATYLPWLALLPPIGALAFVLDGIFIGATDTR 374

Query: 439 YSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGS 488
           Y   SM+    V +  LF+L    G  G+W+AL ++M LR +   LR+  
Sbjct: 375 YLRNSMLVSLAVFLPLLFLLVPLWGNHGLWLALILFMLLRGLTLALRLPR 424

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|182293 PRK10189, PRK10189, MATE family multidrug exporter; Provisional Back     alignment and domain information
>gnl|CDD|236576 PRK09575, vmrA, multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|217323 pfam03023, MVIN, MviN-like protein Back     alignment and domain information
>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|233536 TIGR01695, mviN, integral membrane protein MviN Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|234052 TIGR02900, spore_V_B, stage V sporulation protein B Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 498
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 99.97
KOG1347473 consensus Uncharacterized membrane protein, predic 99.97
COG2244480 RfbX Membrane protein involved in the export of O- 99.95
PRK10189 478 MATE family multidrug exporter; Provisional 99.89
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.88
PRK00187 464 multidrug efflux protein NorA; Provisional 99.88
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.88
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.87
PRK01766 456 multidrug efflux protein; Reviewed 99.87
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.79
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.73
TIGR01695502 mviN integral membrane protein MviN. This model re 99.73
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.72
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.66
PRK10459492 colanic acid exporter; Provisional 99.63
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.63
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.63
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.59
PRK15099416 O-antigen translocase; Provisional 99.53
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.52
COG2244480 RfbX Membrane protein involved in the export of O- 99.46
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.3
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.17
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.06
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.57
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.51
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.45
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.41
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.25
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.23
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.1
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.55
COG4267467 Predicted membrane protein [Function unknown] 97.36
PF14936179 p53-inducible11: Tumour protein p53-inducible prot 87.79
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-53  Score=432.51  Aligned_cols=426  Identities=28%  Similarity=0.461  Sum_probs=394.8

Q ss_pred             cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhh
Q 010889           19 KDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLT   98 (498)
Q Consensus        19 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (498)
                      .++..|+++++++|++++++.+.+++.+|++++||++++++++++++.++...+..+.                      
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~----------------------   69 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIF----------------------   69 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            4568999999999999999999999999999999999999999999988876543222                      


Q ss_pred             hhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 010889           99 VEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNY  178 (498)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~  178 (498)
                                            .|.+.|++..++|++|+||+++.++   ...++++++.+++++..++.+.+.++++.+
T Consensus        70 ----------------------~gl~~g~~~liaq~~Ga~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~  124 (455)
T COG0534          70 ----------------------IGLGTGTTVLVAQAIGAGDRKKAKR---VLGQGLLLALLLGLLLAILLLFFAEPLLRL  124 (455)
T ss_pred             ----------------------HHHHHhHHHHHHHHHcCCchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  2445567889999999999999999   899999999999999999999999999999


Q ss_pred             cccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhh-hc-chhhhHHHH
Q 010889          179 MGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL-FN-WGVSGAAIA  256 (498)
Q Consensus       179 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~-~~-~gv~Gaa~a  256 (498)
                      ++.++|  +.+.+.+|+++..++.|+..++..+.+.+|+.||+|.+++.++++.++|+++|++++++ ++ +|+.|+++|
T Consensus       125 l~~~~~--v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~A  202 (455)
T COG0534         125 LGAPAE--VLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALA  202 (455)
T ss_pred             cCCCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHH
Confidence            987666  89999999999999999999999999999999999999999999999999999999998 57 999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc---cC---CCCccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Q 010889          257 HVISQYLISLILLWKLIEEVD---LL---PPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVC  330 (498)
Q Consensus       257 ~~is~~i~~l~~~~~~~~~~~---~~---~~~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia  330 (498)
                      |++++++..++..++++++++   ..   ..+.+...+||+++.|.|..+++......+...+.+++++|++.+|+|+++
T Consensus       203 T~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~  282 (455)
T COG0534         203 TVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIA  282 (455)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            999999999999999887763   11   123444567999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhh
Q 010889          331 LQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVG  410 (498)
Q Consensus       331 ~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~  410 (498)
                      .++.++.++++.+++++..|++++++|++|+|++|+..+.+..++...+...+..++++++++.++|++|+|+.+.+..+
T Consensus       283 ~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~  362 (455)
T COG0534         283 LRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVIL  362 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHH-HHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHc
Q 010889          411 IPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVS-VAVVSILCLFILSSS-HGYVGIWVALSMYMSLRAIAGFLRIGS  488 (498)
Q Consensus       411 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~i~i~l~~~l~~~-~G~~G~~ia~~~~~~i~~~~~~~~~~~  488 (498)
                      +++.++..++++.+.+..+.+|+.||+|.++...+. .+++.+|+.+++.+. +|..|+|++...++.+..+...+++++
T Consensus       363 l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~  442 (455)
T COG0534         363 LLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRR  442 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999996655 689999999999988 999999999999999999999999984


Q ss_pred             CCCCCCc
Q 010889          489 GSGPWSF  495 (498)
Q Consensus       489 ~~~~w~~  495 (498)
                        ++|++
T Consensus       443 --~~~~~  447 (455)
T COG0534         443 --GRWRR  447 (455)
T ss_pred             --hhhhh
Confidence              44543

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 7e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  123 bits (311), Expect = 7e-31
 Identities = 87/483 (18%), Positives = 168/483 (34%), Gaps = 73/483 (15%)

Query: 25  EIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVT 84
            + ++A P  +A  A      VDT   G +  +++AAV ++ +I+     +    L+   
Sbjct: 13  NLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSI-LFGVGLLMAL 71

Query: 85  TSLVAEEDTIKRLTVEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHER 144
             +VA+ +                                                   +
Sbjct: 72  VPVVAQLN-----------------------------------------------GAGRQ 84

Query: 145 KHIPSA-SSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAP 203
             IP      L++  ++ +     V+   + I+ +M V  +  M      Y+       P
Sbjct: 85  HKIPFEVHQGLILALLVSVP-IIAVLFQTQFIIRFMDV--EEAMATKTVGYMHAVIFAVP 141

Query: 204 AVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIF----LFNWGVSGAAIAHVI 259
           A LL  AL+    G   TK       +G L N+ L+ IF++        G  G  +A  I
Sbjct: 142 AYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAI 201

Query: 260 SQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRV---IAVTFCV-----TL 311
             +++ L+LL+  I     L        F +      + + R+   +A           +
Sbjct: 202 VYWIMLLLLLF-YIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAV 260

Query: 312 AASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHV 371
            A L A  GST +AA QV L       +    +  A    +     ++D   A   A+  
Sbjct: 261 VALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVG 320

Query: 372 LQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGIN 431
           L   +    +  +  ++     + L+T++  V+ L    + F A+ Q ++A+  V  G  
Sbjct: 321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSL 380

Query: 432 FGASD------FAYSAYSMVSVAVVSILCLFILSSSHGY--VGIWVALSMYMSLRAIAGF 483
            G  D        + +Y ++ +    IL +    +       G W+   + +S  A+   
Sbjct: 381 RGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLG 440

Query: 484 LRI 486
            R+
Sbjct: 441 QRL 443
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query498
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.77
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2.3e-46  Score=385.38  Aligned_cols=423  Identities=19%  Similarity=0.219  Sum_probs=379.7

Q ss_pred             cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhh
Q 010889           19 KDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLT   98 (498)
Q Consensus        19 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (498)
                      .++..|++++.++|.+++++.+.+++.+|+.+++|+|++++|+++++.++......+.                      
T Consensus         7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~----------------------   64 (460)
T 3mkt_A            7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG----------------------   64 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            4578899999999999999999999999999999999999999999987754322111                      


Q ss_pred             hhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 010889           99 VEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNY  178 (498)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~  178 (498)
                                            .|++.+.+..++|++|++|+++.++   .+++++.+...++++..++ +.+.+++..+
T Consensus        65 ----------------------~g~~~~~~~~is~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~  118 (460)
T 3mkt_A           65 ----------------------VGLLMALVPVVAQLNGAGRQHKIPF---EVHQGLILALLVSVPIIAV-LFQTQFIIRF  118 (460)
T ss_dssp             ----------------------HHHHHHHGGGCTTTTSSSSTTTHHH---HHHHHHHHHHHHHHHHHHH-HHHHHTTCSS
T ss_pred             ----------------------HHHHHHHHHHHHHHHcCCChhHHHH---HHHHHHHHHHHHHHHHHHH-HHhHHHHHHH
Confidence                                  1333446778999999999999888   7889999999998887665 7788999988


Q ss_pred             cccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhh----hcchhhhHH
Q 010889          179 MGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL----FNWGVSGAA  254 (498)
Q Consensus       179 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~----~~~gv~Gaa  254 (498)
                      ++.+++  ..+.+..|+++.+++.++..+....++.+|+.||++.++..++++.++|+++++++++.    |++|+.|++
T Consensus       119 ~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a  196 (460)
T 3mkt_A          119 MDVEEA--MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCG  196 (460)
T ss_dssp             CSSTTH--HHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHH
T ss_pred             hCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHH
Confidence            865554  78889999999999999999999999999999999999999999999999999999975    479999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCC-------CccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Q 010889          255 IAHVISQYLISLILLWKLIEEVDLLPP-------SSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAF  327 (498)
Q Consensus       255 ~a~~is~~i~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~  327 (498)
                      +++.+++.+..++..++++++++..+.       +.++..+|++++.+.|.+++.+...+...+++.+++++|++++++|
T Consensus       197 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~  276 (460)
T 3mkt_A          197 VATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAH  276 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            999999999999888887765443221       3344567999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHH
Q 010889          328 QVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLI  407 (498)
Q Consensus       328 ~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~  407 (498)
                      +++.++.++...+..+++++..|.+++++|++|.|++|+..++..++....+++.++++.++++++.++|.+|+++.+.+
T Consensus       277 ~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~  356 (460)
T 3mkt_A          277 QVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALA  356 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888888899


Q ss_pred             HhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHHH-HHHHHHHHHHHhc-------cchHHHHHHHHHHHHHHH
Q 010889          408 GVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVA-VVSILCLFILSSS-------HGYVGIWVALSMYMSLRA  479 (498)
Q Consensus       408 ~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~i~i~l~~~l~~~-------~G~~G~~ia~~~~~~i~~  479 (498)
                      ..++++++++.++++.+.+..+.+++.||+|.+++..+... ++++|+++++.+.       +|+.|+|+++.+++.+..
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~  436 (460)
T 3mkt_A          357 MQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAA  436 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999877765 9999999999987       999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 010889          480 IAGFLRIGSGSG  491 (498)
Q Consensus       480 ~~~~~~~~~~~~  491 (498)
                      ++..++++|+.+
T Consensus       437 ~~~~~~~~~~~~  448 (460)
T 3mkt_A          437 LMLGQRLYWLQK  448 (460)
T ss_dssp             HHHHSSSSSSCC
T ss_pred             HHHHHHHHHHHH
Confidence            988887775443
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00