Citrus Sinensis ID: 010961
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 496 | 2.2.26 [Sep-21-2011] | |||||||
| O49287 | 695 | Putative pentatricopeptid | yes | no | 0.957 | 0.683 | 0.587 | 1e-166 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.780 | 0.555 | 0.318 | 5e-60 | |
| Q9SKQ4 | 597 | Pentatricopeptide repeat- | no | no | 0.844 | 0.701 | 0.299 | 7e-60 | |
| P93005 | 727 | Pentatricopeptide repeat- | no | no | 0.836 | 0.570 | 0.294 | 2e-58 | |
| Q9FHF9 | 697 | Pentatricopeptide repeat- | no | no | 0.784 | 0.558 | 0.291 | 1e-55 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.806 | 0.512 | 0.305 | 4e-55 | |
| Q9ZQ74 | 689 | Pentatricopeptide repeat- | no | no | 0.814 | 0.586 | 0.296 | 3e-54 | |
| Q9FM64 | 830 | Pentatricopeptide repeat- | no | no | 0.899 | 0.537 | 0.286 | 3e-54 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.824 | 0.520 | 0.322 | 7e-54 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.780 | 0.520 | 0.294 | 5e-53 |
| >sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 583 bits (1504), Expect = e-166, Method: Compositional matrix adjust.
Identities = 283/482 (58%), Positives = 365/482 (75%), Gaps = 7/482 (1%)
Query: 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
Y RLLQSC++ + + +Q + LKKG L+S + +AN LLQMY R G A LFDE
Sbjct: 28 YYVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDE 87
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
MP RN FSWN MIEG+M G K SL+ F++MP+++ +SWN+++SGFAKAGEL AR LF
Sbjct: 88 MPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLF 147
Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
N MP ++ + NS++H Y+ NG+A EA+RLFKELN DA L TV+ ACA+L
Sbjct: 148 NAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELN------FSADAITLTTVLKACAELE 201
Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
AL+ GKQIH+ IL+ G++ DS + SSLVN+Y KCGD A+ +L ++EPDD LSALIS
Sbjct: 202 ALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALIS 261
Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
GYANCG++N++R +FDR ++ ++WNSMISGYI+NN EAL+LF++MR N ED+ T
Sbjct: 262 GYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMR-NETREDSRT 320
Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
LA+V++AC LGFLE GKQ+H HACK G+IDD++VAS LLD YSK G P +ACKLFSE++
Sbjct: 321 LAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVE 380
Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
YDTILLN+MI VY SCGRI+DAK +F + NKSLISWNSM G SQNG +E L+ F
Sbjct: 381 SYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQ 440
Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
M+KLDL D+ SL+SVISACA+ISSLELGEQVFAR TI+GLDSDQ++S+SL+D YCKCGF
Sbjct: 441 MHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGF 500
Query: 487 IK 488
++
Sbjct: 501 VE 502
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (592), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 137/430 (31%), Positives = 226/430 (52%), Gaps = 43/430 (10%)
Query: 73 FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
F N +I+ + K G E Q+F+ MPQ+N ++WN +++G K G L A +LF MP R
Sbjct: 56 FIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPER 115
Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
+ WNSM+ + ++ EA+ F ++ E + + A+V+ AC+ L + G
Sbjct: 116 DQCTWNSMVSGFAQHDRCEEALCYFAMMHK---EGFVLNEYSFASVLSACSGLNDMNKGV 172
Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
Q+HS I + D +GS+LV++ Y+ CG
Sbjct: 173 QVHSLIAKSPFLSDVYIGSALVDM-------------------------------YSKCG 201
Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
+NDA+RVFD D + V WNS+I+ + N EAL +F M + V D TLASV+S
Sbjct: 202 NVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVIS 261
Query: 313 ACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
AC+SL ++ G++VHG K + +D+I+++A +D Y+K +A +F + + + I
Sbjct: 262 ACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321
Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
+MI+ Y+ + A+ +F M ++++SWN++I G +QNG EAL LFC + +
Sbjct: 322 AETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381
Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDFYCKCG 485
+ +S A+++ ACA+++ L LG Q V G + D + SL+D Y KCG
Sbjct: 382 VCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441
Query: 486 FIKMDEYYLM 495
+ +E YL+
Sbjct: 442 CV--EEGYLV 449
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (590), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 145/484 (29%), Positives = 232/484 (47%), Gaps = 65/484 (13%)
Query: 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
D LA LLQ C S+ GK +H H G ++N L+ MYM+CG P DA
Sbjct: 47 DLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDAC---- 102
Query: 66 EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
++F+ M +N +SWN ++SG+ K+G L AR +
Sbjct: 103 ---------------------------KVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVV 135
Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
F+ MP R+ ++WN+M+ Y ++G EA+ +KE + + + F A ++ AC
Sbjct: 136 FDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGI---KFNEFSFAGLLTACVKS 192
Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
L+ +Q H +LV G + VL S+++ Y KCG SA + + M D + LI
Sbjct: 193 RQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLI 252
Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
SGYA G M A ++F + + V W ++I+GY+ AL LF KM GV +
Sbjct: 253 SGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQF 312
Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
T +S L A +S+ L HGK++HG+ + V + IV S+L+D YSK G + ++F
Sbjct: 313 TFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVF--- 369
Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
RI D KH + WN+MI L+Q+G +AL +
Sbjct: 370 -------------------RICDDKH--------DCVFWNTMISALAQHGLGHKALRMLD 402
Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKC 484
+M K ++ ++ +L +++AC++ +E G + F +T+ G+ DQ L+D +
Sbjct: 403 DMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRA 462
Query: 485 GFIK 488
G K
Sbjct: 463 GCFK 466
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (577), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 154/523 (29%), Positives = 244/523 (46%), Gaps = 108/523 (20%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
LA + ++ ++ S VG+Q H +K + + L+ MY + G D L +F M
Sbjct: 121 LAGIFKAESSLQSSTVGRQAHALVVKMSSFGD-IYVDTSLVGMYCKAGLVEDGLKVFAYM 179
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------NDFSW--------------- 106
P RN ++W+ M+ G+ G E+++++FN+ ++ +D+ +
Sbjct: 180 PERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGL 239
Query: 107 --------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
N L++ ++K L A +F+ RN+I W++M+ Y +
Sbjct: 240 GRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQ 299
Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
NG + EAV+LF + S ++ + + V+ AC+D+ LE GKQ+HS +L G
Sbjct: 300 NGESLEAVKLFSRMFS---AGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGF--- 353
Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
E F +AL+ YA G + DAR+ FD +
Sbjct: 354 ----------------------------ERHLFATTALVDMYAKAGCLADARKGFDCLQE 385
Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
+W S+ISGY+ N+++ EAL+L+ +M+ G++ + T+ASVL ACSSL LE GKQV
Sbjct: 386 RDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQV 445
Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
HGH K G +V + SAL YSK CG +
Sbjct: 446 HGHTIKHGFGLEVPIGSALSTMYSK-------------------------------CGSL 474
Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
ED +FR PNK ++SWN+MI GLS NG EAL+LF M + D + ++ISAC
Sbjct: 475 EDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISAC 534
Query: 447 ANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIK 488
++ +E G F ++ IGLD +VD + G +K
Sbjct: 535 SHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLK 577
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 140/481 (29%), Positives = 234/481 (48%), Gaps = 92/481 (19%)
Query: 41 LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
+ + +++ Y R DAL LFDEMP R+ SWN+MI G ++ G +++LF+ MP+
Sbjct: 66 VSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPE 125
Query: 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
++ SW +++G ++G++ A LF MP ++ AWNSM+H Y++ G +A++LFK++
Sbjct: 126 RSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQM 185
Query: 161 NS-------------DLVER-----------LQC----DAFILATVIGACADLAALEYGK 192
D ER L+C + VI ACA+ A G
Sbjct: 186 PGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGI 245
Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
Q+H I+ G ++ + +SL+ Y C
Sbjct: 246 QVHGLIIKLGFLYEEYVSASLITFYANC-------------------------------K 274
Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
++ D+R+VFD +W +++SGY N + +AL +F M RN +L + ST AS L+
Sbjct: 275 RIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLN 334
Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
+CS+LG L+ GK++HG A K+G+ D V ++L+ YS G +DA +F +K++
Sbjct: 335 SCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVF--IKIF---- 388
Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
KS++SWNS+IVG +Q+G A +F M +L+
Sbjct: 389 -------------------------KKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNK 423
Query: 433 RMDKFSLASVISACANISSLELGEQVFARVT--IIGLDSDQIISTSLVDFYCKCGFIKMD 490
D+ + ++SAC++ LE G ++F ++ I +D T +VD +CG +K
Sbjct: 424 EPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEA 483
Query: 491 E 491
E
Sbjct: 484 E 484
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (549), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 138/452 (30%), Positives = 224/452 (49%), Gaps = 52/452 (11%)
Query: 38 NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
+S + N + YMR G +AL +F MPR + S+N MI G+++ G E + +LF+
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 98 MPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF 157
MP+++ SWN++I G+ + L AR LF MP R+ +WN+M+ Y +NG +A +F
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVF 180
Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
+ + +A + A V + + A + + K + LV+ ++ +LG +
Sbjct: 181 DRMPEK--NDVSWNALLSAYVQNSKMEEACMLF-KSRENWALVS---WNCLLGG-----F 229
Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
K A Q + M D + +I+GYA GK+++AR++FD + W +M+S
Sbjct: 230 VKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVS 289
Query: 278 GYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336
GYI N EA LF KM RN V
Sbjct: 290 GYIQNRMVEEARELFDKMPERNEV------------------------------------ 313
Query: 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
+A+L Y + A +LF + + NTMIT Y+ CG+I +AK++F M
Sbjct: 314 ----SWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKM 369
Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
P + +SW +MI G SQ+G EAL LF M + R+++ S +S +S CA++ +LELG+
Sbjct: 370 PKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGK 429
Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
Q+ R+ G ++ + +L+ YCKCG I+
Sbjct: 430 QLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 461
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (542), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 153/516 (29%), Positives = 237/516 (45%), Gaps = 112/516 (21%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
LL C S+ +Q H G++ + IA +L+ +Y G DA L+FD++P
Sbjct: 50 LLSKCTNIDSL---RQSHGVLTGNGLMGD-ISIATKLVSLYGFFGYTKDARLVFDQIPEP 105
Query: 71 NCFSWNAMIEGF----------------MKLGHK------EKSL---------------- 92
+ + W M+ + MK G + K+L
Sbjct: 106 DFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIH 165
Query: 93 -QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
QL V P ++ L+ +AK GE+K+A +FND+ RN + W SMI YV+N
Sbjct: 166 CQLVKV-PSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCE 224
Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
E + LF + + + + + T+I AC L+AL GK H ++ +G++ S L +
Sbjct: 225 EGLVLFNRMREN---NVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVT 281
Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
SL+++Y KC G +++ARRVF+ + VM
Sbjct: 282 SLLDMYVKC-------------------------------GDISNARRVFNEHSHVDLVM 310
Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
W +MI GY N EAL LF KM+ + + T+ASVLS C + LE G+ VHG +
Sbjct: 311 WTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSI 370
Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
KVG+ +DT + N ++ +Y+ C + DAK+
Sbjct: 371 KVGI--------------------------------WDTNVANALVHMYAKCYQNRDAKY 398
Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
+F K +++WNS+I G SQNGS EAL LF MN + + ++AS+ SACA++ S
Sbjct: 399 VFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGS 458
Query: 452 LELGEQVFARVTIIGL--DSDQIISTSLVDFYCKCG 485
L +G + A +G S + T+L+DFY KCG
Sbjct: 459 LAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCG 494
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 162/566 (28%), Positives = 253/566 (44%), Gaps = 120/566 (21%)
Query: 9 ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+LQ C + GKQ+H LK G I +L+ Y +C A +LF ++
Sbjct: 74 GEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKL 133
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI----------------- 110
RN FSW A+I ++G E +L F M + F N ++
Sbjct: 134 RVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGR 193
Query: 111 --------SG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
SG + K G L A +F+++P RNA+AWN+++ YV+NG
Sbjct: 194 GVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNG 253
Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
EA+RLF ++ VE + ++T + A A++ +E GKQ H+ +VNG++ D++
Sbjct: 254 KNEEAIRLFSDMRKQGVEPTR---VTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNI 310
Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
LG+SL+N Y K G + A VFDR +
Sbjct: 311 LGTSLLNFYCKVG-------------------------------LIEYAEMVFDRMFEKD 339
Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
V WN +ISGY+ +A+ + MR + D TLA+++SA + L+ GK+V
Sbjct: 340 VVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQC 399
Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
+ + D+++AS ++D Y+K G DA K+F D IL NT++ Y+ G
Sbjct: 400 YCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGE 459
Query: 385 -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
++++AK +F M PN LISW +M
Sbjct: 460 ALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPN--LISWTTM 517
Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
+ G+ QNG EA+ M + LR + FS+ +SACA+++SL +G + + I L
Sbjct: 518 MNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYI-IRNL 576
Query: 468 DSDQIIS--TSLVDFYCKCGFIKMDE 491
++S TSLVD Y KCG I E
Sbjct: 577 QHSSLVSIETSLVDMYAKCGDINKAE 602
|
Plays a major role in chloroplast RNA editing. Acts as a site-recognition transacting factor involved in the edition of the site 2 of ndhD (ndhD-2), which encodes a subunit of the NDH complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 229/415 (55%), Gaps = 6/415 (1%)
Query: 76 NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
N ++ + K G+ + +LF+ MP + FSWN ++S ++K G++ + F+ +P+R+++
Sbjct: 53 NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSV 112
Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
+W +MI Y G +A+R+ ++ + +E Q F L V+ + A +E GK++H
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQ---FTLTNVLASVAATRCMETGKKVH 169
Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
S I+ GL + + +SL+N+Y KCGD A V + M D +A+I+ + G+M+
Sbjct: 170 SFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMD 229
Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSAC 314
A F++ + V WNSMISG+ D AL +F KM R+ +L D TLASVLSAC
Sbjct: 230 LAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSAC 289
Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL-- 372
++L L GKQ+H H G IV +AL+ YS+ G A +L + D +
Sbjct: 290 ANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEG 349
Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
++ Y G + AK+IF ++ ++ +++W +MIVG Q+GS EA++LF +M
Sbjct: 350 FTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQ 409
Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
R + ++LA+++S ++++SL G+Q+ G +S +L+ Y K G I
Sbjct: 410 RPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 124/421 (29%), Positives = 198/421 (47%), Gaps = 34/421 (8%)
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
+P F +N ++ + + + ++F+ +PQ N FSWN L+ ++KAG + + F
Sbjct: 36 LPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTF 95
Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
+P R+ + WN +I Y +G AV+ + + D L L T++ +
Sbjct: 96 EKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLT--RVTLMTMLKLSSSNG 153
Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
+ GKQIH ++ G + ++GS L+ +Y G + A +V + + + ++L+
Sbjct: 154 HVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMG 213
Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
G CG + DA ++F R + SV W +MI G N EA+ F +M+ G+ D
Sbjct: 214 GLLACGMIEDALQLF-RGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYP 272
Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
SVL AC LG + GKQ+H + D + V SAL+D Y K
Sbjct: 273 FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCK--------------- 317
Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
C + AK +F M K+++SW +M+VG Q G EA+ +F +
Sbjct: 318 ----------------CKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLD 361
Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
M + + D ++L ISACAN+SSLE G Q + GL +S SLV Y KCG
Sbjct: 362 MQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGD 421
Query: 487 I 487
I
Sbjct: 422 I 422
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 496 | ||||||
| 224066769 | 681 | predicted protein [Populus trichocarpa] | 0.915 | 0.666 | 0.685 | 0.0 | |
| 255558480 | 681 | pentatricopeptide repeat-containing prot | 0.983 | 0.716 | 0.676 | 0.0 | |
| 147833409 | 1796 | hypothetical protein VITISV_018083 [Viti | 0.911 | 0.251 | 0.670 | 0.0 | |
| 225457861 | 685 | PREDICTED: putative pentatricopeptide re | 0.911 | 0.659 | 0.670 | 0.0 | |
| 302142722 | 581 | unnamed protein product [Vitis vinifera] | 0.941 | 0.803 | 0.639 | 1e-177 | |
| 356509350 | 678 | PREDICTED: putative pentatricopeptide re | 0.965 | 0.706 | 0.597 | 1e-166 | |
| 15223809 | 695 | pentatricopeptide repeat-containing prot | 0.957 | 0.683 | 0.587 | 1e-164 | |
| 357518009 | 672 | Pentatricopeptide repeat protein [Medica | 0.947 | 0.699 | 0.595 | 1e-164 | |
| 297839569 | 675 | pentatricopeptide repeat-containing prot | 0.957 | 0.703 | 0.578 | 1e-162 | |
| 108712115 | 684 | pentatricopeptide, putative, expressed [ | 0.937 | 0.679 | 0.465 | 1e-118 |
| >gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa] gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/489 (68%), Positives = 409/489 (83%)
Query: 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
MD + LAR LQS NT HSIH GKQLH+ F KKG++ STL +ANRLLQMY RCG+ TDA
Sbjct: 1 MDLDLQNLARFLQSLNTPHSIHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDA 60
Query: 61 LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
LFDEMP RNCFSWN MIEG+MK G+KE+S++LF++M KND+SWN++ SGFAKAGE++
Sbjct: 61 HKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEME 120
Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
AR LFN+MP RN + WNSMIH Y RNG REAVRLFKELN D +++ CD F+LATVIG
Sbjct: 121 IARRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIG 180
Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
AC DL ++ GKQIH+ IL++ ++ DSVL SSL+NLYGKCGD +SA+ VLN M+EPDDF
Sbjct: 181 ACTDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFS 240
Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
LSALI+GYAN G+MNDARR F R +++ V+WNS+ISGY++NNE+ EA LLF+ M++ G+
Sbjct: 241 LSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGL 300
Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
D STLA++LSACSSL +HGKQ+H +ACKVG+I D +VASA +D YSK G +DACK
Sbjct: 301 KVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACK 360
Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
LFSELK YDTILLN+MITVYS+ G+IEDAK IF TMP+KSLISWNSMIVGLSQNG P+EA
Sbjct: 361 LFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEA 420
Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
LDLFC MNKLDLRM++F+L SVISACA+ISSLELGEQ+FAR T++GLDSD++ISTSLVDF
Sbjct: 421 LDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDF 480
Query: 481 YCKCGFIKM 489
YCKCGFI++
Sbjct: 481 YCKCGFIEI 489
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/489 (67%), Positives = 403/489 (82%), Gaps = 1/489 (0%)
Query: 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TD 59
MD + LARLLQS NTH SIH GKQLHL FLKKG++N+T+ +ANRLLQMY RCG TD
Sbjct: 1 MDLELRSLARLLQSLNTHSSIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTD 60
Query: 60 ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL 119
A LFDEMP RNCFSWN MIEG+M++G KE+SL+LF++MPQKND+SWN++ISGFAKAGEL
Sbjct: 61 AHNLFDEMPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGEL 120
Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
A+ LFN+MPRRN +AWNSMIH Y RNGFAREAV LFKELNS+ +E+ D F+LA+VI
Sbjct: 121 DVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVI 180
Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
GACADL A+EYGKQ+H+ IL++ ++ DSVL SSL+NLY KCG ++AN VL MM E DDF
Sbjct: 181 GACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVLKMMDEVDDF 240
Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
LSALI GYANCG+M+DA R+F ++ V+WNS+ISGY++N+E+ +A L ++M+ N
Sbjct: 241 SLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNNR 300
Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
V D+ST+ +LSACSS G ++ KQ+HG+ CKVG+ID VIVASA +D YSK P+DAC
Sbjct: 301 VQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYSKCRNPNDAC 360
Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
KLFSELK YDT+LLN+MIT Y +CGRI DAK+IF TMP+KSLISWNS+IVGL+QN P+E
Sbjct: 361 KLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLE 420
Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
ALD+F MNKLDLRMD+FSLASVISACA ISSLELGEQVFAR I GL+SDQ +STSLVD
Sbjct: 421 ALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVFARAIITGLESDQAVSTSLVD 480
Query: 480 FYCKCGFIK 488
FYCKCGFI+
Sbjct: 481 FYCKCGFIE 489
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/488 (67%), Positives = 393/488 (80%)
Query: 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
+D + LAR L SCN + SI+ G+ LH+ FLK G+L+S L I NRLLQMY RC + +A
Sbjct: 2 VDLDLHSLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61
Query: 61 LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
LF+EMP+RNCFSWN MIEG++K G K KSL+LF+ MP K+ FSWN++ISGFAK G L+
Sbjct: 62 QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 121
Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
AR LFN+MP +N IAWNSMIH Y NG +EAV LFK+L+ + +ER D F+LATV+G
Sbjct: 122 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 181
Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
AC +L AL+ GKQIH+ I+V+ ++FDSVLGSSLVNLYGKCGD +SAN VLN+MKEPD F
Sbjct: 182 ACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFS 241
Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
LSALISGYA+CG+MNDARR+F ++ V+WNSMISGY++NNE EAL LF+ MRR GV
Sbjct: 242 LSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGV 301
Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
ED ST ASVLSACS+LG ++ G QVH H KVG +D+I+ SAL+D YSK P DACK
Sbjct: 302 QEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACK 361
Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
LFS+L+ YDTILLN+MITVYS+CGRI+DA+ IF TMP+KSLISWNSMIVG SQN PIEA
Sbjct: 362 LFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEA 421
Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
LDLFC MNKL LRMDKFSLA VISACA+ISSLELGEQ+FAR TIIGL+ DQIISTSLVDF
Sbjct: 422 LDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDF 481
Query: 481 YCKCGFIK 488
YCKCG ++
Sbjct: 482 YCKCGLVE 489
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/488 (67%), Positives = 393/488 (80%)
Query: 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
+D + LAR L SCN + SI+ G+ LH+ FLK G+L+S L I NRLLQMY RC + +A
Sbjct: 2 VDLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61
Query: 61 LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
LF+EMP+RNCFSWN MIEG++K G K KSL+LF+ MP K+ FSWN++ISGFAK G L+
Sbjct: 62 QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 121
Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
AR LFN+MP +N IAWNSMIH Y NG +EAV LFK+L+ + +ER D F+LATV+G
Sbjct: 122 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 181
Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
AC +L AL+ GKQIH+ I+V+ ++FDSVLGSSLVNLYGKCGD +SAN VLN+MKEPD F
Sbjct: 182 ACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFS 241
Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
LSALISGYA+CG+MNDARR+F ++ V+WNSMISGY++NNE EAL LF+ MRR GV
Sbjct: 242 LSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGV 301
Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
ED ST ASVLSACS+LG ++ G QVH H KVG +D+I+ SAL+D YSK P DACK
Sbjct: 302 QEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACK 361
Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
LFS+L+ YDTILLN+MITVYS+CGRI+DA+ IF TMP+KSLISWNSMIVG SQN PIEA
Sbjct: 362 LFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEA 421
Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
LDLFC MNKL LRMDKFSLA VISACA+ISSLELGEQ+FAR TIIGL+ DQIISTSLVDF
Sbjct: 422 LDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDF 481
Query: 481 YCKCGFIK 488
YCKCG ++
Sbjct: 482 YCKCGLVE 489
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302142722|emb|CBI19925.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 312/488 (63%), Positives = 374/488 (76%), Gaps = 21/488 (4%)
Query: 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
+D + LAR L SCN + SI+ G+ LH+ FLK G+L+S L I NRLLQMY RC + +A
Sbjct: 38 VDLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 97
Query: 61 LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
LF+EMP+RNCFSWN MIEG++K G K KSL+LF+ MP K+ FSWN++ISGFAK G L+
Sbjct: 98 QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 157
Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
AR LFN+MP +N IAWNSMIH Y NG +EAV LFK+L+ + +ER D F+LATV+G
Sbjct: 158 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 217
Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
AC +L AL+ GKQIH+ I+V+ ++FDSVLGSSLVNLYGKCGD +SAN VLN+MKEPD F
Sbjct: 218 ACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFS 277
Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
LSALISGYA+CG+MNDARR+F ++ V+WNSMISGY++NNE EAL LF+ MRR GV
Sbjct: 278 LSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGV 337
Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
ED ST ASVLSACS+LG ++ G QVH H KVG +D+I+ SAL+D YSK P DACK
Sbjct: 338 QEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACK 397
Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
LFS+L+ YDTILLN+MITV LISWNSMIVG SQN PIEA
Sbjct: 398 LFSDLQAYDTILLNSMITV---------------------LISWNSMIVGFSQNACPIEA 436
Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
LDLFC MNKL LRMDKFSLA VISACA+ISSLELGEQ+FAR TIIGL+ DQIISTSLVDF
Sbjct: 437 LDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDF 496
Query: 481 YCKCGFIK 488
YCKCG ++
Sbjct: 497 YCKCGLVE 504
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 289/484 (59%), Positives = 367/484 (75%), Gaps = 5/484 (1%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L R LQS +T + G+QLH+ FLK GILNS++ +ANRLLQ+Y RC N DA LFDEM
Sbjct: 6 LVRTLQSWST---LREGRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEM 62
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
P+ N FSWN +++ + GH +L LFN MP K FSWNM++S FAK+G L+ A +LFN
Sbjct: 63 PQTNSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFN 122
Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
MP +N + WNS+IH Y R+G +A+ LFK +N D + + DAF+LAT +GACAD A
Sbjct: 123 AMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGACADSLA 182
Query: 188 LEYGKQIHSHILVNG--LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
L GKQ+H+ + V+G L+ D VL SSL+NLYGKCGD +SA ++++ +++ D+F LSALI
Sbjct: 183 LNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALI 242
Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
SGYAN G+M +AR VFD D +V+WNS+ISGY+SN E+ EA+ LF M RNGV DAS
Sbjct: 243 SGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDAS 302
Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
+A++LSA S L +E KQ+H +ACK GV D++VAS+LLD YSK P +ACKLFSEL
Sbjct: 303 AVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSEL 362
Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
K YDTILLNTMITVYS+CGRIEDAK IF TMP+K+LISWNS++VGL+QN P EAL++F
Sbjct: 363 KEYDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFS 422
Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
MNKLDL+MD+FS ASVISACA SSLELGEQVF + IGL+SDQIISTSLVDFYCKCG
Sbjct: 423 QMNKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCG 482
Query: 486 FIKM 489
F+++
Sbjct: 483 FVEI 486
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial; Flags: Precursor gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana] gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 283/482 (58%), Positives = 365/482 (75%), Gaps = 7/482 (1%)
Query: 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
Y RLLQSC++ + + +Q + LKKG L+S + +AN LLQMY R G A LFDE
Sbjct: 28 YYVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDE 87
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
MP RN FSWN MIEG+M G K SL+ F++MP+++ +SWN+++SGFAKAGEL AR LF
Sbjct: 88 MPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLF 147
Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
N MP ++ + NS++H Y+ NG+A EA+RLFKELN DA L TV+ ACA+L
Sbjct: 148 NAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELN------FSADAITLTTVLKACAELE 201
Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
AL+ GKQIH+ IL+ G++ DS + SSLVN+Y KCGD A+ +L ++EPDD LSALIS
Sbjct: 202 ALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALIS 261
Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
GYANCG++N++R +FDR ++ ++WNSMISGYI+NN EAL+LF++MR N ED+ T
Sbjct: 262 GYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMR-NETREDSRT 320
Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
LA+V++AC LGFLE GKQ+H HACK G+IDD++VAS LLD YSK G P +ACKLFSE++
Sbjct: 321 LAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVE 380
Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
YDTILLN+MI VY SCGRI+DAK +F + NKSLISWNSM G SQNG +E L+ F
Sbjct: 381 SYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQ 440
Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
M+KLDL D+ SL+SVISACA+ISSLELGEQVFAR TI+GLDSDQ++S+SL+D YCKCGF
Sbjct: 441 MHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGF 500
Query: 487 IK 488
++
Sbjct: 501 VE 502
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518009|ref|XP_003629293.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355523315|gb|AET03769.1| Pentatricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/472 (59%), Positives = 360/472 (76%), Gaps = 2/472 (0%)
Query: 20 SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
+I +QLHL LK G L+S++ NRLLQ+Y R G+ DA LFDEMP+ N FSWN +I
Sbjct: 9 TIREARQLHLSLLKTGNLHSSVITTNRLLQLYSRRGSLHDASKLFDEMPQPNPFSWNTLI 68
Query: 80 EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
E + LGH+ KSL+LF+ MP K +SWN+++S +K+G+L+ A+ LFN MP +N + WNS
Sbjct: 69 EAHINLGHRNKSLELFHAMPHKTHYSWNLIVSTLSKSGDLQQAQALFNAMPMKNPLVWNS 128
Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
MIH Y R+G+ R ++ LFKE+N D +E + DAF+L+TV GACADL AL+ GKQ+H+ +
Sbjct: 129 MIHGYSRHGYPRNSLLLFKEMNLDPLETVHRDAFVLSTVFGACADLFALDCGKQVHARVF 188
Query: 200 VNGLDF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
++G +F D VL SS+VN YGKCGD +SA +V+ +KE DDF LSAL+SGYAN G+M+DA
Sbjct: 189 IDGFEFEQDKVLCSSIVNFYGKCGDLDSAARVVGFVKEVDDFSLSALVSGYANAGRMSDA 248
Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
R+VFD D SV+WNS+ISGY+SN E+ EAL LF+KMRRNGV D S +A++LS SSL
Sbjct: 249 RKVFDNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGVWGDFSAVANILSISSSL 308
Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
+E KQ+H HA K+G D++VAS LLD YSK P D+CKLF ELKVYD ILLNTMI
Sbjct: 309 LNVELVKQMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHELKVYDAILLNTMI 368
Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
TVY +CGR+EDAK +F +MPNK+LISWNS++VGL+QN P EALD F MNKLD++MDKF
Sbjct: 369 TVYCNCGRVEDAKEVFNSMPNKTLISWNSILVGLTQNACPSEALDTFSMMNKLDVKMDKF 428
Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
S ASVISACA SSLELGEQ+F + +GL+SDQII TSLVDFYCKCG ++M
Sbjct: 429 SFASVISACAIKSSLELGEQLFGKAITLGLESDQIICTSLVDFYCKCGLVEM 480
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839569|ref|XP_002887666.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333507|gb|EFH63925.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 279/482 (57%), Positives = 363/482 (75%), Gaps = 7/482 (1%)
Query: 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
Y RLLQSC+ + + +Q + FLKKG ++S + +AN LLQ+Y R G A LFDE
Sbjct: 8 YYVRLLQSCSNRNRETLWRQTNGLFLKKGFISSIVIVANHLLQIYSRSGKMGIARNLFDE 67
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
MP RN FSWN MIEG+M G K SL+ F++MP+++ +SWN++ISGFAKAGEL AR LF
Sbjct: 68 MPERNYFSWNTMIEGYMNSGDKGTSLRFFDMMPERDGYSWNVVISGFAKAGELSVARRLF 127
Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
+ MP ++ + NS++H Y+ NG++ EA+RLFKEL + DA L TV+ ACA+L
Sbjct: 128 DAMPEKDVVTLNSLLHGYILNGYSEEALRLFKEL------KFSADAITLTTVLKACAELE 181
Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
AL+ GKQIH+ IL+ G++ DS + SSLVN+Y KCGD A+ +L + EPDD LS LIS
Sbjct: 182 ALKRGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIGEPDDHSLSTLIS 241
Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
GYANCG++N++RR+FDR ++ ++WNSMISGYI+NN EAL+LF++MR N ED+ T
Sbjct: 242 GYANCGRVNESRRLFDRKSNRCVILWNSMISGYIANNMKFEALVLFNEMR-NETWEDSRT 300
Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
LA+V++AC LGFLE GKQ+H HACK G++DD++VAS LLD YSK G P +ACKLFSE++
Sbjct: 301 LAAVINACIGLGFLETGKQMHCHACKFGLVDDIVVASTLLDMYSKCGSPMEACKLFSEVE 360
Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
YDTILLN+MI VY SCGRI+DAK +F + NKSLISWNSM G SQNG P+E L+ F
Sbjct: 361 SYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCPVETLEYFSQ 420
Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
M+KLDL D+ SL+SVISACA+ISSL LGEQVFAR TI+GLDSDQI+S+SL+D YCKCG
Sbjct: 421 MHKLDLPTDEVSLSSVISACASISSLGLGEQVFARATIVGLDSDQIVSSSLIDLYCKCGS 480
Query: 487 IK 488
++
Sbjct: 481 VE 482
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|108712115|gb|ABF99910.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] gi|215767226|dbj|BAG99454.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 227/488 (46%), Positives = 325/488 (66%), Gaps = 23/488 (4%)
Query: 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTDALLLFDEM 67
+LL+SC S G+QLH LK G + S+LP +N LL MY RC + DA LFDEM
Sbjct: 12 QLLRSC----SAVAGQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQHDARRLFDEM 67
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
P +NCFS+N++I + +L +F MP++N FSWN +I+G G L AR+L
Sbjct: 68 PVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLI 127
Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC----------DAFILAT 177
+MP ++ +A N+++H YVR G A EA L + + QC D F+LAT
Sbjct: 128 EMPVKDPVACNAVLHRYVRRGRADEAFALLRTVG-------QCSGADASSPWNDPFVLAT 180
Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
++GACAD ++G+Q H+ ++V+ ++ D VL +LVN+Y KCGD +SA VLN + + D
Sbjct: 181 IVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVD 240
Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
+F LSALI GYA+CG +++A R+FDR + S MWNS+ISG +A LF +M R
Sbjct: 241 EFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMR 300
Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
+ VL D+ST AS+L+ C + G+Q+HG K G ++D+IVASAL+D YSK G+ D
Sbjct: 301 SDVLPDSSTYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWED 360
Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
AC+ F EL+ +DTI+LN+MITVYS+CG+IE+A+ IF + KS+ISWNSM+VGLSQNG
Sbjct: 361 ACRAFRELRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQNGHA 420
Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
+AL LFC M++L LR+DK ++AS +SA ++I S+ GEQ+F+ T++GL SD ++++SL
Sbjct: 421 RDALGLFCEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVVASSL 480
Query: 478 VDFYCKCG 485
+D YCKCG
Sbjct: 481 IDLYCKCG 488
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 496 | ||||||
| TAIR|locus:2025242 | 695 | AT1G77010 [Arabidopsis thalian | 0.957 | 0.683 | 0.587 | 6e-151 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.824 | 0.520 | 0.322 | 2.9e-55 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.764 | 0.543 | 0.339 | 2.1e-52 | |
| TAIR|locus:505006163 | 761 | AT1G32415 "AT1G32415" [Arabido | 0.885 | 0.576 | 0.297 | 1.1e-47 | |
| TAIR|locus:2057986 | 625 | AT2G36980 [Arabidopsis thalian | 0.756 | 0.6 | 0.295 | 2.3e-46 | |
| TAIR|locus:2047017 | 597 | AT2G21090 "AT2G21090" [Arabido | 0.723 | 0.601 | 0.299 | 2.1e-45 | |
| TAIR|locus:2013079 | 894 | AT1G19720 "AT1G19720" [Arabido | 0.895 | 0.496 | 0.274 | 2.7e-45 | |
| TAIR|locus:2012517 | 540 | AT1G14470 [Arabidopsis thalian | 0.762 | 0.7 | 0.290 | 4.4e-45 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.766 | 0.5 | 0.276 | 9.1e-45 | |
| TAIR|locus:2044797 | 627 | AT2G35030 [Arabidopsis thalian | 0.838 | 0.663 | 0.297 | 1.5e-44 |
| TAIR|locus:2025242 AT1G77010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
Identities = 283/482 (58%), Positives = 365/482 (75%)
Query: 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
Y RLLQSC++ + + +Q + LKKG L+S + +AN LLQMY R G A LFDE
Sbjct: 28 YYVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDE 87
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
MP RN FSWN MIEG+M G K SL+ F++MP+++ +SWN+++SGFAKAGEL AR LF
Sbjct: 88 MPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLF 147
Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
N MP ++ + NS++H Y+ NG+A EA+RLFKELN DA L TV+ ACA+L
Sbjct: 148 NAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELN------FSADAITLTTVLKACAELE 201
Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
AL+ GKQIH+ IL+ G++ DS + SSLVN+Y KCGD A+ +L ++EPDD LSALIS
Sbjct: 202 ALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALIS 261
Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
GYANCG++N++R +FDR ++ ++WNSMISGYI+NN EAL+LF++MR N ED+ T
Sbjct: 262 GYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMR-NETREDSRT 320
Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
LA+V++AC LGFLE GKQ+H HACK G+IDD++VAS LLD YSK G P +ACKLFSE++
Sbjct: 321 LAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVE 380
Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
YDTILLN+MI VY SCGRI+DAK +F + NKSLISWNSM G SQNG +E L+ F
Sbjct: 381 SYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQ 440
Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
M+KLDL D+ SL+SVISACA+ISSLELGEQVFAR TI+GLDSDQ++S+SL+D YCKCGF
Sbjct: 441 MHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGF 500
Query: 487 IK 488
++
Sbjct: 501 VE 502
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 134/415 (32%), Positives = 229/415 (55%)
Query: 76 NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
N ++ + K G+ + +LF+ MP + FSWN ++S ++K G++ + F+ +P+R+++
Sbjct: 53 NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSV 112
Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
+W +MI Y G +A+R+ ++ + +E Q F L V+ + A +E GK++H
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQ---FTLTNVLASVAATRCMETGKKVH 169
Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
S I+ GL + + +SL+N+Y KCGD A V + M D +A+I+ + G+M+
Sbjct: 170 SFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMD 229
Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSAC 314
A F++ + V WNSMISG+ D AL +F KM R+ +L D TLASVLSAC
Sbjct: 230 LAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSAC 289
Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL-- 372
++L L GKQ+H H G IV +AL+ YS+ G A +L + D +
Sbjct: 290 ANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEG 349
Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
++ Y G + AK+IF ++ ++ +++W +MIVG Q+GS EA++LF +M
Sbjct: 350 FTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQ 409
Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
R + ++LA+++S ++++SL G+Q+ G +S +L+ Y K G I
Sbjct: 410 RPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 138/407 (33%), Positives = 218/407 (53%)
Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
F N LI ++K G L+ R +F+ MP+RN WNS++ + GF EA LF+ +
Sbjct: 56 FIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMP-- 113
Query: 164 LVERLQCDAFILATVIGA---CADLAALEYGKQIHSH-ILVNGLDFDSVLGSSLVNLYGK 219
ER QC + + C + AL Y +H ++N F SVL S+ L
Sbjct: 114 --ERDQCTWNSMVSGFAQHDRCEE--ALCYFAMMHKEGFVLNEYSFASVL-SACSGL--- 165
Query: 220 CGDFNSANQVLNMM-KEP---DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
D N QV +++ K P D + SAL+ Y+ CG +NDA+RVFD D + V WNS+
Sbjct: 166 -NDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSL 224
Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
I+ + N EAL +F M + V D TLASV+SAC+SL ++ G++VHG K
Sbjct: 225 ITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDK 284
Query: 336 I-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
+ +D+I+++A +D Y+K +A +F + + + I +MI+ Y+ + A+ +F
Sbjct: 285 LRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFT 344
Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
M ++++SWN++I G +QNG EAL LFC + + + +S A+++ ACA+++ L L
Sbjct: 345 KMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHL 404
Query: 455 GEQVFARVTIIGL------DSDQIISTSLVDFYCKCGFIKMDEYYLM 495
G Q V G + D + SL+D Y KCG + +E YL+
Sbjct: 405 GMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCV--EEGYLV 449
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| TAIR|locus:505006163 AT1G32415 "AT1G32415" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 1.1e-47, P = 1.1e-47
Identities = 139/467 (29%), Positives = 232/467 (49%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
N L+ +R G+ A +FD MP R+ SWNAMI+G+++ E++ LF M +KN
Sbjct: 173 NTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVV 232
Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
+W ++ G+ + G+++ A LF +MP RN ++W +MI + N REA+ LF E+ D
Sbjct: 233 TWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFLEMKKD- 291
Query: 165 VERLQCDAFILATVIGACADLAALEY---GKQIHSHILVNG---LDFDSVLGSSLVNLYG 218
V+ + + L ++ AC L +E+ G+Q+H+ ++ NG +D D L SLV++Y
Sbjct: 292 VDAVSPNGETLISLAYACGGLG-VEFRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYA 350
Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT-SSVMWNSMIS 277
G SA +LN + C + +I+ Y G + A +F+R V W SMI
Sbjct: 351 SSGLIASAQSLLNESFDLQS-C-NIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMID 408
Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
GY+ + + A LF K+ +D T ++S + + G+
Sbjct: 409 GYLEAGDVSRAFGLFQKLHD----KDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKP 464
Query: 338 -----DVIVASALLDTYSKRGMPSDACKLFSELKVYDT--ILLNTMITVYSSCGRIEDAK 390
V+++SA + +G C + YD IL N+++++Y+ CG IEDA
Sbjct: 465 LNSTYSVLLSSAGATSNLDQGKHIH-CVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAY 523
Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
IF M K +SWNSMI+GLS +G +AL+LF M + + + V+SAC++
Sbjct: 524 EIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSG 583
Query: 451 SLELGEQVFARVT---IIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
+ G ++F + I D IS ++D + G +K E ++
Sbjct: 584 LITRGLELFKAMKETYSIQPGIDHYIS--MIDLLGRAGKLKEAEEFI 628
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| TAIR|locus:2057986 AT2G36980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 113/383 (29%), Positives = 193/383 (50%)
Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN-SDLVERL 168
I+ AK+G + +AR +F+ MP + +AWN+M+ Y R G +EA+ LF +L SD
Sbjct: 11 IASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDA---- 66
Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
+ D + ++ CA L +++G++I S ++ +G + +SL+++YGKC D SAN+
Sbjct: 67 KPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANK 126
Query: 229 VLNMM--KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
V M ++ +L+ Y N + A VF + WN MISG+ +
Sbjct: 127 VFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLE 186
Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSS-LGFLEHGKQVHGHACKVGVIDDVIVASAL 345
L LF +M + D T +S+++ACS+ + +G+ VH K G V +++
Sbjct: 187 SCLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSV 246
Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
L Y+K G DA + ++V + N++I G E A +F P K++++W
Sbjct: 247 LSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWT 306
Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
+MI G +NG +AL F M K + D F+ +V+ AC+ ++ L G+ + +
Sbjct: 307 TMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHC 366
Query: 466 GLDSDQIISTSLVDFYCKCGFIK 488
G + +LV+ Y KCG IK
Sbjct: 367 GFQGYAYVGNALVNLYAKCGDIK 389
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| TAIR|locus:2047017 AT2G21090 "AT2G21090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 109/364 (29%), Positives = 194/364 (53%)
Query: 130 PRRNAIAW-NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
PR+ I S + + +AV + L + RL D +LA+++ C D +L
Sbjct: 6 PRKRPICVAQSFLSKHATKAELSQAVSRLESLTQQGI-RLPFD--LLASLLQQCGDTKSL 62
Query: 189 EYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
+ GK IH H+ + G +++L + L+ +Y KCG A +V + M + + + ++SG
Sbjct: 63 KQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSG 122
Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
Y G + AR VFD + V WN+M+ GY + EAL + + RR+G+ + +
Sbjct: 123 YVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSF 182
Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
A +L+AC L+ +Q HG G + +V+++ +++D Y+K G A + F E+ V
Sbjct: 183 AGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTV 242
Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
D + T+I+ Y+ G +E A+ +F MP K+ +SW ++I G + GS ALDLF M
Sbjct: 243 KDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKM 302
Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
L ++ ++F+ +S + A A+I+SL G+++ + + + I+ +SL+D Y K G +
Sbjct: 303 IALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSL 362
Query: 488 KMDE 491
+ E
Sbjct: 363 EASE 366
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| TAIR|locus:2013079 AT1G19720 "AT1G19720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 484 (175.4 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 131/478 (27%), Positives = 241/478 (50%)
Query: 6 DYL-ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
D+L ++LQ C + GK +H +K G ++S L ++N +L +Y +CG A F
Sbjct: 181 DFLFPKILQGCANCGDVEAGKVIHSVVIKLG-MSSCLRVSNSILAVYAKCGELDFATKFF 239
Query: 65 DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS-----WNMLISGFAKAGEL 119
M R+ +WN+++ + + G E++++L M +K S WN+LI G+ + G+
Sbjct: 240 RRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEM-EKEGISPGLVTWNILIGGYNQLGKC 298
Query: 120 KTARTLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
A L M + W +MI + NG +A+ +F+++ + + +A +
Sbjct: 299 DAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKM---FLAGVVPNAVTI 355
Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
+ + AC+ L + G ++HS + G D ++G+SLV++Y KCG A +V + +K
Sbjct: 356 MSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKN 415
Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLL 291
D + +++I+GY G A +F R D + + WN+MISGYI N ++ EA+ L
Sbjct: 416 KDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDL 475
Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC--KVG----VIDDVIVASAL 345
F +M ++G ++ + +++ A G++++GK+ K+ + + V + S L
Sbjct: 476 FQRMEKDGKVQRNTATWNLIIA----GYIQNGKKDEALELFRKMQFSRFMPNSVTILSLL 531
Query: 346 LDTYSKRG--MPSD--ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
+ G M + C L L + N + Y+ G IE ++ IF M K +
Sbjct: 532 PACANLLGAKMVREIHGCVLRRNLDAIHAVK-NALTDTYAKSGDIEYSRTIFLGMETKDI 590
Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
I+WNS+I G +GS AL LF M + ++ +L+S+I A + +++ G++VF
Sbjct: 591 ITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVF 648
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| TAIR|locus:2012517 AT1G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 113/389 (29%), Positives = 212/389 (54%)
Query: 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
+ N ++ MY++ + A +FD++ +R WN MI G+ K G+KE++ +LF++MP+ +
Sbjct: 138 VRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKLFDMMPEND 197
Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
SW ++I+GFAK +L+ AR F+ MP ++ ++WN+M+ Y +NGF +A+RLF ++
Sbjct: 198 VVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFNDMLR 257
Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
L R +++ VI AC+ A + + I + + + ++L++++ KC D
Sbjct: 258 -LGVRPNETTWVI--VISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRD 314
Query: 223 FNSANQVLNMMKEPDDFCL-SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
SA ++ N + + +A+ISGY G M+ AR++FD + V WNS+I+GY
Sbjct: 315 IQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAH 374
Query: 282 NNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGV-IDDV 339
N + A+ F M G + D T+ SVLSAC + LE G + + K + ++D
Sbjct: 375 NGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGDCIVDYIRKNQIKLNDS 434
Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
S L+ Y++ G +A ++F E+K D + NT+ T +++ G + ++ M ++
Sbjct: 435 GYRS-LIFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFAANGDGVETLNLLSKMKDE 493
Query: 400 SL----ISWNSMIVGLSQNGSPIEALDLF 424
+ +++ S++ ++ G E +F
Sbjct: 494 GIEPDRVTYTSVLTACNRAGLLKEGQRIF 522
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| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 108/391 (27%), Positives = 197/391 (50%)
Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
LI+ ++ A + +P +++S+I+ + +++ +F + S L
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFS---HGL 112
Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
D+ +L + CA+L+A + GKQIH V+GLD D+ + S+ ++Y +CG A +
Sbjct: 113 IPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARK 172
Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----DTSSVMWNSMISGYISNNE 284
V + M + D SAL+ YA G + + R+ + + V WN ++SG+ +
Sbjct: 173 VFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGY 232
Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
EA+++F K+ G D T++SVL + L G+ +HG+ K G++ D V SA
Sbjct: 233 HKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISA 292
Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL--- 401
++D Y K G LF++ ++ + + N IT S G ++ A +F +++
Sbjct: 293 MIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELN 352
Query: 402 -ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
+SW S+I G +QNG IEAL+LF M ++ + ++ S++ AC NI++L G
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHG 412
Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
+ L + + ++L+D Y KCG I + +
Sbjct: 413 FAVRVHLLDNVHVGSALIDMYAKCGRINLSQ 443
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| TAIR|locus:2044797 AT2G35030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 132/444 (29%), Positives = 226/444 (50%)
Query: 23 VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEG 81
VGK L G+ + ++ Y++ G+ +A LFD + R+N +W AM+ G
Sbjct: 59 VGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSG 118
Query: 82 FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
+++ + LF MP++N SWN +I G+A++G + A LF++MP RN ++WNSM+
Sbjct: 119 YLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMV 178
Query: 142 HCYVRNGFAREAVRLFKEL-NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
V+ G EA+ LF+ + D+V A V G LA + GK + L
Sbjct: 179 KALVQRGRIDEAMNLFERMPRRDVVSWT-------AMVDG----LA--KNGKVDEARRLF 225
Query: 201 NGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
+ + +++ ++++ Y + + A+Q+ +M E D + +I+G+ +MN A
Sbjct: 226 DCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACG 285
Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLG 318
+FDR + + + W +MI+GY+ N E+ EAL +F KM R+G V + T S+LSACS L
Sbjct: 286 LFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLA 345
Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY--DTILLNTM 376
L G+Q+H K + IV SALL+ YSK G A K+F V D I N+M
Sbjct: 346 GLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSM 405
Query: 377 ITVYSSCGRIEDAKHIFRTMPNK----SLISWNSMIVGLSQNGSPIEALDLFCNM---NK 429
I VY+ G ++A ++ M S +++ +++ S G + ++ F ++
Sbjct: 406 IAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDES 465
Query: 430 LDLRMDKFSLASVISACANISSLE 453
L LR + ++ ++ C L+
Sbjct: 466 LPLREEHYTC--LVDLCGRAGRLK 487
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O49287 | PP127_ARATH | No assigned EC number | 0.5871 | 0.9576 | 0.6834 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00020700 | hypothetical protein (681 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 496 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-70 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-53 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-52 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-50 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-43 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-31 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-30 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-28 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
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Score = 238 bits (610), Expect = 5e-70
Identities = 139/484 (28%), Positives = 219/484 (45%), Gaps = 105/484 (21%)
Query: 41 LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-- 98
+ + N +L M++R G A +F +MP R+ FSWN ++ G+ K G+ +++L L++ M
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 99 ----PQKNDF-----------SW----------------------NMLISGFAKAGELKT 121
P F N LI+ + K G++ +
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
AR +F+ MPRR+ I+WN+MI Y NG E + LF + V D + +VI A
Sbjct: 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV---DPDLMTITSVISA 297
Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
C L G+++H +++ G D + +SL+ +Y
Sbjct: 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY------------------------ 333
Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
+ G +A +VF R +V W +MISGY N +AL + M ++ V
Sbjct: 334 -------LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386
Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
D T+ASVLSAC+ LG L+ G ++H A + G+I V+VA+AL++ YSK
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK---------- 436
Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
C I+ A +F +P K +ISW S+I GL N EAL
Sbjct: 437 ---------------------CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475
Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
F M L L+ + +L + +SACA I +L G+++ A V G+ D + +L+D Y
Sbjct: 476 IFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534
Query: 482 CKCG 485
+CG
Sbjct: 535 VRCG 538
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 4e-53
Identities = 126/492 (25%), Positives = 215/492 (43%), Gaps = 107/492 (21%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+L++C + G+++H H ++ G + + N L+ MY++CG+ A L+FD MPRR
Sbjct: 193 VLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------ 100
+C SWNAMI G+ + G + L+LF M +
Sbjct: 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311
Query: 101 ----KNDFS-----WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
K F+ N LI + G A +F+ M ++A++W +MI Y +NG
Sbjct: 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD 371
Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
+A+ + + D V D +A+V+ ACA L L+ G ++H GL V+ +
Sbjct: 372 KALETYALMEQDNVSP---DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
+L+ +Y KC + A +V + + E D +IS
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPEKD------VIS------------------------- 457
Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
W S+I+G NN EAL+ F +M + ++ TL + LSAC+ +G L GK++H H
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVL 516
Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
+ G+ D + +ALLD Y + CGR+ A +
Sbjct: 517 RTGIGFDGFLPNALLDLYVR-------------------------------CGRMNYAWN 545
Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
F + K ++SWN ++ G +G A++LF M + + D+ + S++ AC+
Sbjct: 546 QFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604
Query: 452 LELGEQVFARVT 463
+ G + F +
Sbjct: 605 VTQGLEYFHSME 616
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 4e-52
Identities = 104/360 (28%), Positives = 169/360 (46%), Gaps = 65/360 (18%)
Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
+ N ++ K G L AR LF++MP RN +W ++I V G REA LF+E+ D
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218
Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
+ + ++ A A L + G+Q+H +L G+ D+ + +L+++Y KCGD
Sbjct: 219 GSD---AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD- 274
Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
+ DAR VFD + ++V WNSM++GY +
Sbjct: 275 ------------------------------IEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
EAL L+++MR +GV D T + ++ S L LEH KQ H + G D++ +
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
AL+D YSK GR+EDA+++F MP K+LIS
Sbjct: 365 ALVDLYSK-------------------------------WGRMEDARNVFDRMPRKNLIS 393
Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
WN++I G +G +A+++F M + + + +V+SAC E G ++F ++
Sbjct: 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 1e-50
Identities = 112/381 (29%), Positives = 180/381 (47%), Gaps = 65/381 (17%)
Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
N ++S F + GEL A +F MP R+ +WN ++ Y + G+ EA+ L+ + L
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM---LWA 181
Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
++ D + V+ C + L G+++H+H++ G + D + ++L+ +Y KCGD SA
Sbjct: 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241
Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
R VFDR + WN+MISGY N E
Sbjct: 242 -------------------------------RLVFDRMPRRDCISWNAMISGYFENGECL 270
Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
E L LF MR V D T+ SV+SAC LG G+++HG+ K G DV V
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC---- 326
Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
N++I +Y S G +A+ +F M K +SW +
Sbjct: 327 ---------------------------NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359
Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
MI G +NG P +AL+ + M + ++ D+ ++ASV+SACA + L++G ++ G
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419
Query: 467 LDSDQIISTSLVDFYCKCGFI 487
L S +++ +L++ Y KC I
Sbjct: 420 LISYVVVANALIEMYSKCKCI 440
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 1e-43
Identities = 92/341 (26%), Positives = 147/341 (43%), Gaps = 72/341 (21%)
Query: 151 REAVRLFKELNSDLVERLQC----DAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
REA+ LF+ L C A ++ AC L ++ K ++ H+ +G + D
Sbjct: 104 REALELFEIL------EAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD 157
Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
+ N+VL M + CG + DARR+FD +
Sbjct: 158 QYM----------------MNRVLLM---------------HVKCGMLIDARRLFDEMPE 186
Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
+ W ++I G + EA LF +M +G + T +L A + LG G+Q+
Sbjct: 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246
Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
H K GV+ D V+ AL+D YSK CG I
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSK-------------------------------CGDI 275
Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
EDA+ +F MP K+ ++WNSM+ G + +G EAL L+ M + +D+F+ + +I
Sbjct: 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335
Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
+ ++ LE +Q A + G D + +T+LVD Y K G +
Sbjct: 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 2e-31
Identities = 98/435 (22%), Positives = 179/435 (41%), Gaps = 118/435 (27%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+ ++ +C +G+++H + +K G + + N L+QMY+ G+ +A +F M
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND------------------------ 103
++ SW AMI G+ K G +K+L+ + +M Q N
Sbjct: 350 ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409
Query: 104 -----------FSW----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
S+ N LI ++K + A +F+++P ++ I+W S+I N
Sbjct: 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN 469
Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
EA+ F+++ L + ++ L + ACA + AL GK+IH+H+L G+ FD
Sbjct: 470 RCFEALIFFRQMLLTL----KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525
Query: 209 LGSSLVNLYGKCGDFNSA-NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
L ++L++LY +CG N A NQ F D
Sbjct: 526 LPNALLDLYVRCGRMNYAWNQ----------FNSHE---------------------KDV 554
Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
S WN +++GY+++ + + A+ LF++M +GV D T S+L AC
Sbjct: 555 VS--WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC------------- 599
Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN-----TMITVYSS 382
S+ GM + + F ++ +I N ++ +
Sbjct: 600 ----------------------SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637
Query: 383 CGRIEDAKHIFRTMP 397
G++ +A + MP
Sbjct: 638 AGKLTEAYNFINKMP 652
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-30
Identities = 75/257 (29%), Positives = 113/257 (43%), Gaps = 39/257 (15%)
Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
+A++S + G++ A VF + + WN ++ GY EAL L+H+M GV
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
D T VL C + L G++VH H + G DV V
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV-------------------- 224
Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
+N +IT+Y CG + A+ +F MP + ISWN+MI G +NG +E L
Sbjct: 225 -----------VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL 273
Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
+LF M +L + D ++ SVISAC + LG ++ V G D + SL+ Y
Sbjct: 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333
Query: 482 CKCG--------FIKMD 490
G F +M+
Sbjct: 334 LSLGSWGEAEKVFSRME 350
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 101/422 (23%), Positives = 163/422 (38%), Gaps = 141/422 (33%)
Query: 20 SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
S G+QLH LK G++ T ++ L+ MY +CG+ DA +FD MP
Sbjct: 239 SARAGQQLHCCVLKTGVVGDTF-VSCALIDMYSKCGDIEDARCVFDGMP----------- 286
Query: 80 EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
+K +AWNS
Sbjct: 287 --------------------EKTT-------------------------------VAWNS 295
Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
M+ Y +G++ EA+ L+ E+ + D F + +I + LA LE+ KQ H+ ++
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDS---GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
G D V ++LV+LY K G+M DAR
Sbjct: 353 RTGFPLDIVANTALVDLYSK-------------------------------WGRMEDARN 381
Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
VFDR + + WN++I+GY ++ T+A+ +F +M GV + T +VLSAC G
Sbjct: 382 VFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 320 LEHGK-------QVHG-------HACKV------GVIDD---VIVASALLDTYSKRGMPS 356
E G + H +AC + G++D+ +I + T +
Sbjct: 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALL 501
Query: 357 DACKL--------FSELKVYD---------TILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
AC++ + K+Y +LLN +Y+S GR +A + T+ K
Sbjct: 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLN----LYNSSGRQAEAAKVVETLKRK 557
Query: 400 SL 401
L
Sbjct: 558 GL 559
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 6e-13
Identities = 57/242 (23%), Positives = 96/242 (39%), Gaps = 32/242 (13%)
Query: 248 YANCGKMNDARRVFDRTTDTSSVMW-NSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
Y N +R + + +SS NS + S+ + +AL L M+ V D
Sbjct: 29 YWNFHGRKRSRGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDA 88
Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
++ C +E G +V A L ++ G+
Sbjct: 89 YVALFRLCEWKRAVEEGSRVCSRA---------------LSSHPSLGVR----------- 122
Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
L N M++++ G + A ++F MP + L SWN ++ G ++ G EAL L+
Sbjct: 123 -----LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR 177
Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
M +R D ++ V+ C I L G +V A V G + D + +L+ Y KCG
Sbjct: 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237
Query: 487 IK 488
+
Sbjct: 238 VV 239
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 58/235 (24%), Positives = 106/235 (45%), Gaps = 22/235 (9%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
L +C ++ GK++H H L+ GI + LP N LL +Y+RCG A F+ +
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLP--NALLDLYVRCGRMNYAWNQFN-SHEK 552
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLF 126
+ SWN ++ G++ G +++LFN M + ++ ++ L+ +++G + F
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 127 NDMPRRNAIAWN-----SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
+ M + +I N ++ R G EA ++ + D + ++ A
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP------ITPDPAVWGALLNA 666
Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKE 235
C +E G+ HI LD +SV L+ NLY G ++ +V M+E
Sbjct: 667 CRIHRHVELGELAAQHIF--ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPRR----NAIAWNSMIHCYVR 146
+ ++N LI G+ K G+++ A LFN+M +R N ++ +I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 4e-07
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAK 115
+ ++N +I+G+ K G E++L+LFN M ++ N +++++LI G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
V +N++I GY + EAL LF++M++ G+ + T + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
V +NS+ISGY + EAL LF +M+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNC----FSWNAMIEGFMK 84
N L+ Y + G +AL LF+EM +R ++++ +I+G K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 3e-04
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMP 130
+ ++N LI G +AG + A L ++M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
++++N++I G + G EAL LF M K ++ + ++ + +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 5e-04
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 135 IAWNSMIHCYVRNGFAREAVRLFKEL 160
+ +NS+I Y + G EA+ LFKE+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 80/474 (16%), Positives = 166/474 (35%), Gaps = 76/474 (16%)
Query: 66 EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
E+P ++ + +E L + P+ D +L + G +K L
Sbjct: 338 ELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLL-----RDGRIKDCIDL 392
Query: 126 FNDMPRRNAIAWNSMIH------CYVRNGFAREAVRLFKELNSD---------------- 163
DM +R + + + H C + +EA R K + +
Sbjct: 393 LEDMEKRGLLDMDKIYHAKFFKACKKQ-RAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQ 451
Query: 164 ----------LVER--LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
LV+ L+ D + T+I CA ++ ++ ++ G++ +
Sbjct: 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511
Query: 212 SLVNLYGKCGDFNSANQVLNMMK----EPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
+L++ + G A +M+ +PD +ALIS CG+ R FD +
Sbjct: 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA---CGQSGAVDRAFDVLAEM 568
Query: 268 SS---------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
+ + +++ + + A ++ + + +++CS G
Sbjct: 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628
Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
+ ++ K GV D + SAL+D G A F L+ +
Sbjct: 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA---FEILQDARKQGIKLGTV 685
Query: 379 VYSS----CGRI----------EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
YSS C ED K I + P S + N++I L + +AL++
Sbjct: 686 SYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVS--TMNALITALCEGNQLPKALEVL 742
Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
M +L L + + + ++ A ++G + ++ G+ + ++ +
Sbjct: 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 9e-04
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRN 133
++N LISG+ KAG+L+ A LF +M +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKE 159
+ + +N++I Y + G EA++LF E
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNE 28
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 79/373 (21%), Positives = 156/373 (41%), Gaps = 40/373 (10%)
Query: 34 KGILNSTLPIANRLLQMYMRCGNPTD------ALLLFDEMP-RRNCFSWNAMIEGFMKLG 86
K I N TL N L+ + C + D L L E + +C + +I K G
Sbjct: 430 KLIRNPTLSTFNMLMSV---CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486
Query: 87 HKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNA----IAWN 138
+ ++F+ M + N ++ LI G A+AG++ A + M +N + +N
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
++I ++G A + E+ ++ + D + ++ ACA+ ++ K+++ I
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKM 254
+ + + VN + GD++ A + + MK+ PD+ SAL+ + G +
Sbjct: 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665
Query: 255 NDARRVFDR---------TTDTSSVMWNSMISGYISNNEDTE-ALLLFHKMRRNGVLEDA 304
+ A + T SS+M G SN ++ + AL L+ ++ +
Sbjct: 666 DKAFEILQDARKQGIKLGTVSYSSLM------GACSNAKNWKKALELYEDIKSIKLRPTV 719
Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
ST+ ++++A L +V ++G+ + I S LL ++ L S+
Sbjct: 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779
Query: 365 LKVYDTILLNTMI 377
K D I N ++
Sbjct: 780 AKE-DGIKPNLVM 791
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
+++NS+I G + G EAL+LF M + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
V +N++I G EAL LF +M+ G+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRN 133
++N LI G KAG ++ A LF +M R
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 496 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.55 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.52 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.46 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.42 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.41 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.4 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.33 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.29 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.28 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.28 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.27 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.22 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.22 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.18 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.15 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.11 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.1 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.09 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.09 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.08 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.04 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.99 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.97 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.92 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.85 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.83 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.78 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.78 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.72 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.69 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.68 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.67 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.66 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.59 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.51 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.5 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.47 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.46 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.45 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.43 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.41 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.41 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.4 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.38 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.37 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.37 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.37 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.27 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.26 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.23 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.23 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.21 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.2 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.2 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.19 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.13 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.1 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 98.09 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.08 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.04 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.01 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.0 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.0 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.96 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.95 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.94 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.93 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.85 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.84 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.77 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.74 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.73 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.73 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.7 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.69 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.67 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.65 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.64 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.63 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.62 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.59 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.57 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.56 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.56 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.54 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.53 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.53 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.51 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.51 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.45 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.39 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.38 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.36 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.35 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.35 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.33 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.32 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.32 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.26 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.26 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.23 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.22 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.2 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.15 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.14 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.12 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.1 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.09 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.05 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.03 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.01 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.01 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.97 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.94 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.94 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.93 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.91 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.86 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.85 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.8 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.75 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.71 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.69 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.59 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.59 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.56 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.52 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.49 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.49 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.46 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.45 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.44 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.42 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.4 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.33 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.32 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.27 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.22 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.21 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.19 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.19 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.1 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.06 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.98 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.91 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.85 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.72 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.71 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.69 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.67 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.62 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.59 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.45 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.3 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.29 | |
| PRK09687 | 280 | putative lyase; Provisional | 95.25 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.24 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.16 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.1 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 95.0 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.76 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.76 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.75 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.67 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.61 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.49 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.42 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.4 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.32 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.21 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.07 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.04 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.0 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.93 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.73 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.71 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.66 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.65 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.62 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.54 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.5 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.5 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.46 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.38 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.18 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.16 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.12 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.12 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.92 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.75 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.63 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.61 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.6 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.49 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.44 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.17 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.94 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.85 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.71 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.67 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.49 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.47 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.26 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.21 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.38 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.21 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.08 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.59 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.9 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.85 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.78 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.76 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.73 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.5 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 88.43 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.33 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.29 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 88.28 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.21 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.61 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.91 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.73 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 85.94 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.76 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.41 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.36 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.99 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.71 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 84.66 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 84.64 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.46 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.1 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.09 | |
| PF14669 | 233 | Asp_Glu_race_2: Putative aspartate racemase | 83.52 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.46 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.02 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 83.02 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.87 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 82.87 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.84 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 82.07 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 81.61 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 81.33 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 81.09 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.47 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.11 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.04 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-72 Score=566.16 Aligned_cols=486 Identities=23% Similarity=0.415 Sum_probs=446.5
Q ss_pred CcchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHH
Q 010961 2 DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81 (496)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 81 (496)
.|+..+|..++++|...+.++.+.+++..+.+.+..++.. +++.++.+|++.|+++.|.++|+.|.+||..+||.+|.+
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~ 161 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR-LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGG 161 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHH
Confidence 4788888999999999999999999999999999888887 999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhhCCC----CCh-----------------------------------hhHHHHHHHHHhcCChhHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQ----KND-----------------------------------FSWNMLISGFAKAGELKTA 122 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~----~~~-----------------------------------~~~~~l~~~~~~~~~~~~a 122 (496)
|++.|++++|+++|++|.. ||. .+|++|+.+|++.|+++.|
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 241 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHH
Confidence 9999999999999999853 554 4557778888999999999
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 123 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
.++|++|+.+|..+||.+|.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|++.|+.+.+.+++..|.+.|
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~---~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE---LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998 6899999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcC----CCCcchHHHHHHH
Q 010961 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----DTSSVMWNSMISG 278 (496)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~ 278 (496)
+.||..+|+.|+.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999875 4889999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhH
Q 010961 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358 (496)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 358 (496)
|++.|+++.|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999999999999999999988754 4566777777777777777777
Q ss_pred HHHHHhcc---cCchhh-----------------------------------HHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 010961 359 CKLFSELK---VYDTIL-----------------------------------LNTMITVYSSCGRIEDAKHIFRTMPNKS 400 (496)
Q Consensus 359 ~~~~~~~~---~~~~~~-----------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 400 (496)
..+|++|. .||..+ +++++.+|++.|++++|.++|+.+ .+|
T Consensus 475 ~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d 553 (857)
T PLN03077 475 LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKD 553 (857)
T ss_pred HHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCC
Confidence 77777775 455544 455667888889999999999999 899
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH-HcCCCchHHHHHHHHH
Q 010961 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVD 479 (496)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~ 479 (496)
..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.+++
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 6899999999999999
Q ss_pred HHHhcCChHHHHHhhhC
Q 010961 480 FYCKCGFIKMDEYYLMQ 496 (496)
Q Consensus 480 ~~~~~g~~~~A~~~~~e 496 (496)
+|+++|++++|.+++++
T Consensus 634 ~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 634 LLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHhCCCHHHHHHHHHH
Confidence 99999999999999874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-69 Score=549.40 Aligned_cols=481 Identities=24% Similarity=0.396 Sum_probs=454.6
Q ss_pred CCcchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHH
Q 010961 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80 (496)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 80 (496)
+.||..||..++++|+..++++.+.+++..+.+.|+.|+.. +++.|+.+|++.|++++|.++|++|.+||..+||++|.
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD-VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc-hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHH
Confidence 35788888888888888888888888888888888888888 89999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChhHHHHHHhhcCC----CCcccHHHHHHHHHHcCCHHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPR----RNAIAWNSMIHCYVRNGFARE 152 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~ 152 (496)
+|++.|++++|+++|++|.+ ||..||+.++.+|++.|+++.|.+++..|.+ ||..+||.|+.+|++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999965 9999999999999999999999999999874 799999999999999999999
Q ss_pred HHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (496)
|.++|++|.. ||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.
T Consensus 342 A~~vf~~m~~-------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 342 AEKVFSRMET-------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414 (857)
T ss_pred HHHHHhhCCC-------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999954 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC----CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010961 233 MKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308 (496)
Q Consensus 233 ~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 308 (496)
+.+ ++..+|+.++.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+
T Consensus 415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~ 493 (857)
T PLN03077 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLI 493 (857)
T ss_pred HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHH
Confidence 874 88999999999999999999999999999999999999999999999999999999999986 5999999999
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHH
Q 010961 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388 (496)
Q Consensus 309 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (496)
.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhhCCC----CChhhHHHHHHHHHhCCChhhHHHHHHHHH-hCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 010961 389 AKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVISACANISSLELGEQVFARVT 463 (496)
Q Consensus 389 a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (496)
|.++|++|.+ ||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m- 651 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM- 651 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence 9999999974 899999999999999999999999999999 7899999999999999999999999999999988
Q ss_pred HcCCCchHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 464 IIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 464 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
.++||..+|++|+.+|...|+.+.+....
T Consensus 652 --~~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 652 --PITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred --CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 47899999999999998888888766543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-68 Score=530.10 Aligned_cols=489 Identities=14% Similarity=0.176 Sum_probs=456.9
Q ss_pred cchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHH
Q 010961 3 TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82 (496)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 82 (496)
++...|..++..|.+.|+++.|.++|++|.+.|+.+...-.++.++..|.+.|.+++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46678889999999999999999999999999976555437888999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChhHHHHHHhhcC----CCCcccHHHHHHHHHHcCCHHHHH
Q 010961 83 MKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMP----RRNAIAWNSMIHCYVRNGFAREAV 154 (496)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~ 154 (496)
++.|+++.|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999975 899999999999999999999999999998 489999999999999999999999
Q ss_pred HHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHH--cCCCcchhHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV--NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (496)
++|++|.. .|+.||..+|+.+|.+|++.|+++.|.+++++|.. .|+.||..+|+.++.+|++.|++++|.++|+.
T Consensus 528 ~lf~~M~~---~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 528 GAYGIMRS---KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHH---cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999 68999999999999999999999999999999987 67999999999999999999999999999999
Q ss_pred cCC----CChHHHHHHHHHHHhcCChhHHHHHHHhcCC----CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 010961 233 MKE----PDDFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304 (496)
Q Consensus 233 ~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 304 (496)
|.+ |+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 985 7789999999999999999999999999875 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc----cCchhhHHHHHHHH
Q 010961 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVY 380 (496)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~ 380 (496)
.+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997 79999999999999
Q ss_pred HhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHh----C-------------------CChhhHHHHHHHHHhCCCC
Q 010961 381 SSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQ----N-------------------GSPIEALDLFCNMNKLDLR 433 (496)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~m~~~~~~ 433 (496)
++.|+++.|.++|++|.+ ||..+|+.++..|.+ . +..+.|+.+|++|.+.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 999999999999999975 899999999865432 1 2246799999999999999
Q ss_pred CCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhhC
Q 010961 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496 (496)
Q Consensus 434 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~e 496 (496)
||..||+.++.++.+.+..+.+..+++.|...+..|+..+|++|++++.+. .++|..+++|
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 999999999988889999999999999998888899999999999998432 4689988864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-66 Score=513.29 Aligned_cols=453 Identities=15% Similarity=0.249 Sum_probs=427.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHhhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 010961 40 TLPIANRLLQMYMRCGNPTDALLLFDEMPRRN-----CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114 (496)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 114 (496)
+.+.|..++..+++.|++++|+++|+.|.+++ ...++.++.+|.+.|..++|..+++.|..||..+|+.++.+|+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 33388999999999999999999999998754 4566778888999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHhhcCC----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHH
Q 010961 115 KAGELKTARTLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190 (496)
Q Consensus 115 ~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 190 (496)
+.|+++.|.++|+.|.+ ||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~---~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN---AGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999974 7999999999999999999999999999999 6899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC------CCChHHHHHHHHHHHhcCChhHHHHHHHhc
Q 010961 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK------EPDDFCLSALISGYANCGKMNDARRVFDRT 264 (496)
Q Consensus 191 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (496)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 489999999999999999999999999998
Q ss_pred CC----CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHH
Q 010961 265 TD----TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340 (496)
Q Consensus 265 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 340 (496)
.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 76 56789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcc----cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHH
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLS 412 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~ 412 (496)
+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999996 79999999999999999999999999999864 89999999999999
Q ss_pred hCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----c-------------------CchhhHHHHHHHHHHcCCCc
Q 010961 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----I-------------------SSLELGEQVFARVTIIGLDS 469 (496)
Q Consensus 413 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~ 469 (496)
+.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+.|+.|
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999999999999876542 1 12367999999999999999
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 470 DQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
|..+|+.++.++++.+..+.+..+++
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~ 871 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIE 871 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHH
Confidence 99999999999999999999888775
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=492.44 Aligned_cols=441 Identities=21% Similarity=0.330 Sum_probs=422.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHH
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR-----RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGF 113 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~ 113 (496)
.++.++..|.+.|++++|+++|+.|.. ||..+|+.++.+|.+.++++.+.+++..|.+ ||..+|+.++..|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 789999999999999999999999863 6889999999999999999999999999864 9999999999999
Q ss_pred HhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHH
Q 010961 114 AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193 (496)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 193 (496)
++.|++++|.++|++|.+||..+||.++.+|++.|++++|+++|++|.+ .|+.|+..+|..++.+|+..|..+.+.+
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~---~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE---DGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 6899999999999999999999999999
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcC----CCCc
Q 010961 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----DTSS 269 (496)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~ 269 (496)
++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.++|..+|+.++.+|++.|++++|.++|++|. .||.
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999884 5899
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (496)
.+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .||..+||.||.+|
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y 401 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999985 47889999999999
Q ss_pred HhcCChhhHHHHHHhcc----cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhCCChhhH
Q 010961 350 SKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-----KSLISWNSMIVGLSQNGSPIEA 420 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a 420 (496)
++.|+.++|.++|++|. .||..+|+.++.+|.+.|.+++|.++|+.|.+ |+..+|+.++.+|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999998 79999999999999999999999999999963 8889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS-DQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 421 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+ +.| +..+|..|+++|++.|++++|.++++
T Consensus 482 ~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 482 YAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 9998876 5799999999999999999999999999999865 445 46799999999999999999999986
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-63 Score=489.20 Aligned_cols=463 Identities=20% Similarity=0.310 Sum_probs=425.9
Q ss_pred CcchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHH
Q 010961 2 DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81 (496)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 81 (496)
.||..+|..++.+|.+.++++.+.+++..+.+.|+.|+.. +++.|+.+|++.|++++|.++|++|.+||..+||.++.+
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~-~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~ 198 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY-MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGG 198 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH-HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHH
Confidence 4788999999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChhHHHHHHhhcCC----CCcccHHHHHHHHHHcCCHHHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPR----RNAIAWNSMIHCYVRNGFAREA 153 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a 153 (496)
|++.|++++|+++|++|.+ ||..+|+.++.++++.|+.+.+.+++..+.+ +|..+|+.|+.+|++.|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 9999999999999999965 8999999999999999999999999887763 7899999999999999999999
Q ss_pred HHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 154 ~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
.++|++|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|
T Consensus 279 ~~vf~~m~~-------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 279 RCVFDGMPE-------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHhCCC-------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 999999954 7899999999999999999999999999999999999999999999999999999999999998
Q ss_pred C----CCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010961 234 K----EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309 (496)
Q Consensus 234 ~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 309 (496)
. .||..+|+.++.+|++.|++++|.++|++|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 431 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 7 488999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccchhhHHHHHHHHHH-cCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc-cCchhhHHHHHHHHHhcCCHH
Q 010961 310 VLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-VYDTILLNTMITVYSSCGRIE 387 (496)
Q Consensus 310 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 387 (496)
++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. .|+..+|++++.+|...|+++
T Consensus 432 ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999999986 6999999999999999999999999999999997 889999999999999999999
Q ss_pred HHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH-HHHHHH-------HHHHhcc----Cch
Q 010961 388 DAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK-FSLASV-------ISACANI----SSL 452 (496)
Q Consensus 388 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l-------~~~~~~~----g~~ 452 (496)
.|..+++++.+ | +..+|..|+..|++.|++++|.++++.|++.|+++.+ .+|..+ +.+-..+ .-+
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~ 591 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIY 591 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHH
Confidence 99999998865 4 4679999999999999999999999999999986432 223211 1000001 113
Q ss_pred hhHHHHHHHHHHcCCCchHH
Q 010961 453 ELGEQVFARVTIIGLDSDQI 472 (496)
Q Consensus 453 ~~a~~~~~~~~~~~~~~~~~ 472 (496)
+...++..+|.+.|+.||..
T Consensus 592 ~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 592 QKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 45566777888999999854
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=284.99 Aligned_cols=479 Identities=13% Similarity=0.030 Sum_probs=328.6
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--------------
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-------------- 69 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------- 69 (496)
++..+..+...+...|++++|..+++.+.+.. |.....+..+...+...|++++|++.|+.+.+
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 439 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIL 439 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHH
Confidence 34455556666666677777777776666554 33333555555566666666666665555433
Q ss_pred -----------------------CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHH
Q 010961 70 -----------------------RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTAR 123 (496)
Q Consensus 70 -----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 123 (496)
++..+|..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 1334455555555555555555555555433 22334444555555555555555
Q ss_pred HHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 010961 124 TLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200 (496)
Q Consensus 124 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (496)
+.|+.+.+ .+..++..+...+.+.|+.++|...++++... .+.+...+..+...+...|+++.|..+++.+.+
T Consensus 520 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL----NPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555542 23445555666666666666666666666552 223444555666666667777777777776665
Q ss_pred cCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHH
Q 010961 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNS 274 (496)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 274 (496)
.. +.+...+..+..++...|++++|...|+.+.+ .+...+..+...+...|++++|...|+++.+ .+..++..
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG 674 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 43 23556667777777777777777777776653 3455666777777777777777777776654 23456777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...+..+.+.+ |+..++..+..++...|+
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCC
Confidence 7777777777888877777777664 4566667777777788888888888888887764 333566677888888888
Q ss_pred hhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 010961 355 PSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMN 428 (496)
Q Consensus 355 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 428 (496)
+++|.+.++.+. +.+...+..+...|...|++++|...|+++.+ ++..+++.+...+...|+ .+|+..++++.
T Consensus 752 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 888888888776 45667788888888889999999999888764 356778888888888888 77999999888
Q ss_pred hCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 429 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+.. +-++.++..+...+...|++++|...++.+.+.+.. ++.++..+..++.+.|+.++|.++++
T Consensus 831 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 831 KLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred hhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 752 445667888888899999999999999999987754 88999999999999999999999886
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=278.19 Aligned_cols=480 Identities=11% Similarity=0.019 Sum_probs=285.9
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHH
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIE 80 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~ 80 (496)
++.....+...+...|+++.|...++.+.+.. |.....+..+...+.+.|++++|.+.|+++.+ .+...+..+..
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 405 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 44556667788889999999999999998876 33444888999999999999999999998865 34566777788
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAV 154 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 154 (496)
.+...|++++|.+.++++.+ | +......++..+.+.|++++|.++++.+.. ++..+|..+...+...|++++|.
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 485 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHH
Confidence 88888888888888877654 2 223344455555666666666666665543 23445555556666666666666
Q ss_pred HHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc--------------
Q 010961 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC-------------- 220 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 220 (496)
+.|+++.+. .+.+...+..+...+...|+++.|.+.++.+.+.++. +..++..+...+.+.
T Consensus 486 ~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 486 EAFEKALSI----EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHhh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666555541 1122333444444555555555555555555443322 334444444444444
Q ss_pred --------------------CChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHH
Q 010961 221 --------------------GDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNS 274 (496)
Q Consensus 221 --------------------~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 274 (496)
|++++|..+++.+.+ .+...|..+..++...|++++|...|+++.+ .++..+..
T Consensus 561 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 640 (899)
T TIGR02917 561 ELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL 640 (899)
T ss_pred HhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 444444444444432 2334455555555555555555555554432 12334445
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|+
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence 5555555555555555555555432 2334455555555555555555555555555543 3344445555556666666
Q ss_pred hhhHHHHHHhcc--cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 355 PSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 355 ~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
+++|.+.|+.+. .|+..++..++.++.+.|++++|.+.++++.+ .+...+..+...|...|++++|.++|+++.+
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 666666666554 33444555556666666666666666665543 2445566666666666777777777766666
Q ss_pred CCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 430 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.. +++...+..+...+...|+ .+|...++++.+... -++.++..+..++.+.|++++|.++++
T Consensus 799 ~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 799 KA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred hC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 53 4456666666666666666 556666666655432 244556666777777777777777664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-24 Score=223.81 Aligned_cols=487 Identities=10% Similarity=0.006 Sum_probs=310.0
Q ss_pred CCc-chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHH--------------HHHHHHHHHhcCChHHHHHHhh
Q 010961 1 MDT-RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPI--------------ANRLLQMYMRCGNPTDALLLFD 65 (496)
Q Consensus 1 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~A~~~~~ 65 (496)
++| |+..+..+++.+...|+.++|...++.+.+..+....... ...+.+.+...|++++|+..|+
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 466 6677777788888889999999999988888743222100 1233456778889999998888
Q ss_pred hCCCCChhhH----HHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCc----
Q 010961 66 EMPRRNCFSW----NAMIEGFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGELKTARTLFNDMPRRNA---- 134 (496)
Q Consensus 66 ~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 134 (496)
.+.+.++... ..........|+.++|++.++++.+ | +...+..+...+...|+.++|++.++++.....
T Consensus 137 ~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 137 KLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred HHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 8775222111 1111112235778888888888776 3 345566777777777888888877776532100
Q ss_pred -------------------ccH----------------------------------HHHHHHHHHcCCHHHHHHHHHHHH
Q 010961 135 -------------------IAW----------------------------------NSMIHCYVRNGFAREAVRLFKELN 161 (496)
Q Consensus 135 -------------------~~~----------------------------------~~li~~~~~~~~~~~a~~~~~~~~ 161 (496)
..+ ......+...|++++|+..|++..
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 000 011334556788888888888877
Q ss_pred HchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcch-hHH------------HHHHHHHHhcCChhhHH
Q 010961 162 SDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS-VLG------------SSLVNLYGKCGDFNSAN 227 (496)
Q Consensus 162 ~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------------~~l~~~~~~~~~~~~a~ 227 (496)
+ ..| +...+..+..++.+.|++++|...|++..+....... ..+ ......+.+.|++++|.
T Consensus 297 ~-----~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 297 R-----ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred H-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 6 334 5667777777788888888888888887765443211 111 12234556777888888
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CC-cchHH----------------------------
Q 010961 228 QVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD--TS-SVMWN---------------------------- 273 (496)
Q Consensus 228 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~---------------------------- 273 (496)
..|+++.+ .+...+..+...+...|++++|++.|+++.+ |+ ...+.
T Consensus 372 ~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 372 RLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 88877664 2344566677777778888888888777654 22 11221
Q ss_pred --------------HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH
Q 010961 274 --------------SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339 (496)
Q Consensus 274 --------------~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 339 (496)
.+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...++.+.+... .++
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~ 529 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDP 529 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCH
Confidence 12234456788888888888887753 33455666777778888888888888888776432 223
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhc-------------------------------------------ccCchhhHHHH
Q 010961 340 IVASALLDTYSKRGMPSDACKLFSEL-------------------------------------------KVYDTILLNTM 376 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~a~~~~~~~-------------------------------------------~~~~~~~~~~l 376 (496)
..+..+...+...++.++|...++.+ .+.++..+..+
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~L 609 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHH
Confidence 22222222333344444444443332 23344455666
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchh
Q 010961 377 ITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 453 (496)
...+.+.|++++|+..|+++.+ | +...+..++..|...|++++|++.++...+.. +.+..++..+..++...|+++
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHH
Confidence 7777777888888887777664 3 45677777788888888888888888766541 234555666777777888888
Q ss_pred hHHHHHHHHHHcCCC--c---hHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 454 LGEQVFARVTIIGLD--S---DQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 454 ~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+|.++++.+...... | +..++..+...+.+.|+.++|.+.++
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888877664321 2 23456666777788888888887765
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-22 Score=212.37 Aligned_cols=481 Identities=11% Similarity=0.064 Sum_probs=343.9
Q ss_pred hHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CChhhH---------
Q 010961 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNCFSW--------- 75 (496)
Q Consensus 7 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~--------- 75 (496)
.+...++.+...++.+.|.+.++.+.... |+...++..++..+.+.|+.++|.+.++++.+ |+...+
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Confidence 35556677888999999999999998875 55566889999999999999999999999976 432221
Q ss_pred --------HHHHHHHHhcCCHHHHHHHHhhCCC--CChhhH--HHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHH
Q 010961 76 --------NAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSW--NMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSM 140 (496)
Q Consensus 76 --------~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 140 (496)
..+...+.+.|++++|.+.|+++.+ |+.... ..........|+.++|++.++++.+ | +...+..+
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2334567889999999999999887 322221 1112222346999999999999986 3 45678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHchhc---------------cCC--------------cCHHHH----------------
Q 010961 141 IHCYVRNGFAREAVRLFKELNSDLVE---------------RLQ--------------CDAFIL---------------- 175 (496)
Q Consensus 141 i~~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~--------------p~~~~~---------------- 175 (496)
...+...|+.++|++.++++...... +.. |+...+
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 99999999999999999988552100 000 111000
Q ss_pred -----HHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CCh---HHHH---
Q 010961 176 -----ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDD---FCLS--- 242 (496)
Q Consensus 176 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~--- 242 (496)
......+...|++++|...+++.++..+. +...+..+..++.+.|++++|+..|++..+ |+. ..|.
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 01123456778999999999999987543 677888999999999999999999998774 332 1121
Q ss_pred ---------HHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010961 243 ---------ALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310 (496)
Q Consensus 243 ---------~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 310 (496)
.....+.+.|++++|...|+++.+ .+...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 223457789999999999998876 235577778899999999999999999988753 2223222222
Q ss_pred ------------------------------------------HHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 311 ------------------------------------------LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 311 ------------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
...+...|++++|...++++.+.. +.++..+..+...
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 223445788888999898888764 3456677788888
Q ss_pred HHhcCChhhHHHHHHhcc---cCchhhHHHHHH--------------------------------------------HHH
Q 010961 349 YSKRGMPSDACKLFSELK---VYDTILLNTMIT--------------------------------------------VYS 381 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~--------------------------------------------~~~ 381 (496)
|...|++++|...++++. +.++..+..+.. .+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999998876 223333222222 333
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
..|+.++|.++++.- ..+...+..+...+.+.|++++|+..+++..+.. +.+...+..+...+...|++++|...++.
T Consensus 585 ~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 585 DSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555555555421 1234455667778888888888888888888763 44677888888888888888888888887
Q ss_pred HHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 462 VTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 462 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
..+... .+......+..++.+.|++++|.++++
T Consensus 663 ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 663 LPATAN-DSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred HhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 765432 245566677888888888888888775
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-20 Score=184.27 Aligned_cols=456 Identities=11% Similarity=-0.001 Sum_probs=304.8
Q ss_pred ccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CChhhHHHHHHHHHhcCCHHHHHHH
Q 010961 17 THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQL 94 (496)
Q Consensus 17 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~ 94 (496)
..|++++|...|+..++.. |++..++..|.+.|.+.|++++|+..+++..+ |+-..|..++..+ +++++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 4599999999999999987 44455899999999999999999999999876 4323333333222 889999999
Q ss_pred HhhCCC--C-ChhhHHHHHHH--------HHhcCChhHHHHHHhhcCCCC--cccHHHH-HHHHHHcCCHHHHHHHHHHH
Q 010961 95 FNVMPQ--K-NDFSWNMLISG--------FAKAGELKTARTLFNDMPRRN--AIAWNSM-IHCYVRNGFAREAVRLFKEL 160 (496)
Q Consensus 95 ~~~~~~--~-~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~~~~~~ 160 (496)
++++.. | +..++..+... |.+.++..++++ .+...|+ ..+.... ...|.+.|+|++|+++++++
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999976 4 34556556555 666666666666 3333343 4434444 89999999999999999999
Q ss_pred HHchhccCCcCHHHHHHHHHHHHc-cchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC----
Q 010961 161 NSDLVERLQCDAFILATVIGACAD-LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---- 235 (496)
Q Consensus 161 ~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 235 (496)
.+. ...+..-...+..++.. .++ +.+..+++. .++-+......+...|.+.|+.++|.++++++..
T Consensus 209 ~k~----~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 209 RQQ----NTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred Hhc----CCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 983 22334445556566666 366 777777543 3335778888999999999999999999988862
Q ss_pred -CChHHHHHH------------------------------HHHH------------------------------------
Q 010961 236 -PDDFCLSAL------------------------------ISGY------------------------------------ 248 (496)
Q Consensus 236 -~~~~~~~~l------------------------------~~~~------------------------------------ 248 (496)
|+..+|... +..+
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 222111100 1111
Q ss_pred ---------------------------HhcCChhHHHHHHHhcCC-C---------------------------------
Q 010961 249 ---------------------------ANCGKMNDARRVFDRTTD-T--------------------------------- 267 (496)
Q Consensus 249 ---------------------------~~~~~~~~a~~~~~~~~~-~--------------------------------- 267 (496)
.+.|+.++|..+|+...+ +
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 234555566666554332 0
Q ss_pred ------------------------------------CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010961 268 ------------------------------------SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311 (496)
Q Consensus 268 ------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 311 (496)
+...|..+..++.. +++++|+..+.+.... .|+......+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA 516 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVA 516 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHH
Confidence 01112222222222 4445555555554443 34433333333
Q ss_pred HHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHH---HHHHHHHhcCCHHH
Q 010961 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN---TMITVYSSCGRIED 388 (496)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~ 388 (496)
..+...|++++|...++.+... +|+...+..+..++...|++++|...+++....++.... .+.......|++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence 3445677777777777766443 233334455566677777777777777776633322222 22333344588888
Q ss_pred HHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 389 AKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 389 a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
|...+++..+ |+...|..+...+.+.|++++|...+++..... +.+...+..+..++...|++++|...++...+..
T Consensus 595 Al~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 595 ALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8888888775 677778888888889999999999999888863 4456677888888888899999999999887754
Q ss_pred CCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 467 LDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 467 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
. -++..+..+..++.+.|++++|.+.++
T Consensus 674 P-~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 674 P-DDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred C-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 366788888999999999999988775
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=169.32 Aligned_cols=426 Identities=13% Similarity=0.090 Sum_probs=341.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhc
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNC---FSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKA 116 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 116 (496)
....|..-..+.|++.+|++.-+..-..|+ ...-.+-..+.+..+.+....--....+ .-..+|..+.+.+-..
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 345677777788999999987776644222 2233344566677777776654444433 3457899999999999
Q ss_pred CChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHH-HHHHHHccchHHHHH
Q 010961 117 GELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT-VIGACADLAALEYGK 192 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~ 192 (496)
|++++|+..++.+.+ | .+..|..+..++...|+.+.|.+.|.+..+ +.|+..-..+ +-......|++++|.
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq-----lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----cCcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999875 3 567999999999999999999999999988 7787654444 334455678999999
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC-hHHHHHHHHHHHhcCChhHHHHHHHhcCC--C
Q 010961 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD-DFCLSALISGYANCGKMNDARRVFDRTTD--T 267 (496)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 267 (496)
..+.+.++.... -...|+.|...+...|+...|+..|++..+ |+ ...|-.|...|...+.+++|...+.+... |
T Consensus 205 ~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 205 ACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 999988876543 456788899999999999999999999886 43 45788889999999999999999988665 3
Q ss_pred -CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHH
Q 010961 268 -SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345 (496)
Q Consensus 268 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (496)
....+..+...|..+|..+-|+..|++..+. .|+ ...|+.+..++-..|++.+|...+...+... +......+.|
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 3567888888999999999999999999885 443 6789999999999999999999999998864 3446677889
Q ss_pred HHHHHhcCChhhHHHHHHhcccCc---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhh
Q 010961 346 LDTYSKRGMPSDACKLFSELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPN--KSL-ISWNSMIVGLSQNGSPIE 419 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~ 419 (496)
...|...|.+++|..+|.....-. ....+.|...|-+.|++++|+..+++..+ |+. .+|+.+...|-..|+.+.
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999999877333 44688899999999999999999999876 543 689999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchH-HHHHHHHHHH
Q 010961 420 ALDLFCNMNKLDLRMD-KFSLASVISACANISSLELGEQVFARVTIIGLDSDQ-IISTSLVDFY 481 (496)
Q Consensus 420 a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 481 (496)
|++.+.+.... .|. ...++.|...|-.+|+..+|.+-++...+ ++||. ..+..++.++
T Consensus 441 A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 441 AIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 99999998875 564 56889999999999999999999998877 44553 3444444444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=176.87 Aligned_cols=291 Identities=11% Similarity=0.039 Sum_probs=145.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcc---hhHHHHHHHHHH
Q 010961 143 CYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFD---SVLGSSLVNLYG 218 (496)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 218 (496)
.+...|++++|+..|+++.+ ..| +..++..+...+...|+++.|..+++.+...+..++ ..++..+...|.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLK-----VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHh-----cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 34455666666666666655 223 233555555555666666666666665555332111 134455555666
Q ss_pred hcCChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC--------cchHHHHHHHHHhCCCHHH
Q 010961 219 KCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDTS--------SVMWNSMISGYISNNEDTE 287 (496)
Q Consensus 219 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~ 287 (496)
..|++++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+...|++++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 66666666666665543 222333333444444444444444443332211 0122333444444555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc
Q 010961 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367 (496)
Q Consensus 288 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 367 (496)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~----------------------- 254 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK----------------------- 254 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH-----------------------
Confidence 555555544432 12233334444444444555555555544444322222233344
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
++.+|...|++++|...++++.+ |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..
T Consensus 255 --------l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 255 --------LMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred --------HHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 44444444455555444444432 44444566666666667777777777666654 5666666666655
Q ss_pred Hhc---cCchhhHHHHHHHHHHcCCCchHH
Q 010961 446 CAN---ISSLELGEQVFARVTIIGLDSDQI 472 (496)
Q Consensus 446 ~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 472 (496)
+.. .|+.+++..+++.+.+.++.|++.
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 543 346666666677666655555554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-18 Score=170.28 Aligned_cols=473 Identities=12% Similarity=0.018 Sum_probs=313.0
Q ss_pred hhhHHHH-HhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHh-cCChHHHHHHhhhCCCCChhhHHHHHHHH
Q 010961 5 IDYLARL-LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR-CGNPTDALLLFDEMPRRNCFSWNAMIEGF 82 (496)
Q Consensus 5 ~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 82 (496)
+..+... .+.|...++.++|..++..+.+.++.. ......|..+|.. .++ +++..+++...+.++..+..+...+
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~--~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~y 257 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLS--AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATAL 257 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHH
Confidence 4434444 566666776777777777777766322 2245556666665 255 6666665544445666666777777
Q ss_pred HhcCCHHHHHHHHhhCCC-----CChhhH------------------------------HHHHHHHHhcCChhHHHHHHh
Q 010961 83 MKLGHKEKSLQLFNVMPQ-----KNDFSW------------------------------NMLISGFAKAGELKTARTLFN 127 (496)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~-----~~~~~~------------------------------~~l~~~~~~~~~~~~a~~~~~ 127 (496)
.+.|+.++|.++++++.. |...++ ..++..+.+.++++.++++..
T Consensus 258 i~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (987)
T PRK09782 258 AYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA 337 (987)
T ss_pred HHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 777777777777766653 211111 112344445555555544422
Q ss_pred hcCCCCcccHHHHHHHHH--HcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc-C-C
Q 010961 128 DMPRRNAIAWNSMIHCYV--RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-G-L 203 (496)
Q Consensus 128 ~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~ 203 (496)
....+. . ..++... ..+...++...+..|.+. .+-+......+--...+.|+.++|.++++..... + -
T Consensus 338 -~~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~----~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 338 -TLPANE-M--LEERYAVSVATRNKAEALRLARLLYQQ----EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred -CCCcch-H--HHHHHhhccccCchhHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence 111111 1 1222221 224555555555555552 1224444444555566788899999999888762 1 2
Q ss_pred CcchhHHHHHHHHHHhcCCh---hhHHHHHH-------------------------hcCC---C--ChHHHHHHHHHHHh
Q 010961 204 DFDSVLGSSLVNLYGKCGDF---NSANQVLN-------------------------MMKE---P--DDFCLSALISGYAN 250 (496)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~-------------------------~~~~---~--~~~~~~~l~~~~~~ 250 (496)
.++......++..|.+.+.. .++..+.. .... + +...|..+..++..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 22444555788888877663 33333211 1111 2 45667777777776
Q ss_pred cCChhHHHHHHHhcCCCCcchHHHH--HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHH
Q 010961 251 CGKMNDARRVFDRTTDTSSVMWNSM--ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328 (496)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 328 (496)
++.++|...+.+.....+..++.+ ...+...|++++|...|+++... +|+...+..+...+.+.|+.+.|...++
T Consensus 490 -~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred -CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888889998877655333334444 44446899999999999998664 4555556667778889999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Chhh
Q 010961 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLIS 403 (496)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~ 403 (496)
...+.. +++...+..+.......|++++|...+++.. .|+...+..+...+.+.|++++|+..+++... | +...
T Consensus 567 qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a 645 (987)
T PRK09782 567 QAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNY 645 (987)
T ss_pred HHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 998865 3333344444445556699999999999988 46778889999999999999999999999875 4 5567
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchH-HHHHHHHHHHH
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ-IISTSLVDFYC 482 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 482 (496)
++.+...+...|+.++|+..+++..+.. +-+...+..+..++...|++++|...+++..+.. |+. .+.........
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHH
Confidence 8888999999999999999999998863 4467889999999999999999999999998754 443 56666677777
Q ss_pred hcCChHHHHHhhh
Q 010961 483 KCGFIKMDEYYLM 495 (496)
Q Consensus 483 ~~g~~~~A~~~~~ 495 (496)
+..+++.|.+-++
T Consensus 723 ~~~~~~~a~~~~~ 735 (987)
T PRK09782 723 QRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-20 Score=164.75 Aligned_cols=425 Identities=14% Similarity=0.083 Sum_probs=260.7
Q ss_pred HHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhc
Q 010961 9 ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKL 85 (496)
Q Consensus 9 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 85 (496)
..|.+..-+.|++++|.......-+.+. ...+....+-..+....+++.....-....+ ....+|..+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~--t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDP--TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCC--CcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3444555566666666665554444432 2221333334455555555554433333322 1345677777777777
Q ss_pred CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCc--c-cHHHHHHHHHHcCCHHHHHHHHHH
Q 010961 86 GHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNA--I-AWNSMIHCYVRNGFAREAVRLFKE 159 (496)
Q Consensus 86 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~li~~~~~~~~~~~a~~~~~~ 159 (496)
|++++|+.+++.+.+ .....|..+..++...|+.+.|...|.+..+-|+ . ..+.+...+...|+..+|...|.+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 777777777777665 2345677777777777777777777776665332 2 223344445556777777777766
Q ss_pred HHHchhccCCcCH-HHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC--CC
Q 010961 160 LNSDLVERLQCDA-FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK--EP 236 (496)
Q Consensus 160 ~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~ 236 (496)
..+ .+|.- ..|..|...+-.+|+...|.+-|++.++..+. -...|-.|...|...+.+++|...+.+.. +|
T Consensus 210 Ai~-----~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 210 AIE-----TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHh-----hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 665 44432 35556666666777777777777777665432 34466667777777777777777766654 24
Q ss_pred C-hHHHHHHHHHHHhcCChhHHHHHHHhcCC--CC-cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010961 237 D-DFCLSALISGYANCGKMNDARRVFDRTTD--TS-SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312 (496)
Q Consensus 237 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 312 (496)
+ ...+..+...|...|..+.|+..+++..+ |+ +.+|+.|..++-..|+..+|.+.|.+..... +--....+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 3 44566666667777777777777777665 22 4567777777777777777777777766642 223445666777
Q ss_pred HHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc--Cc-hhhHHHHHHHHHhcCCHHHH
Q 010961 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--YD-TILLNTMITVYSSCGRIEDA 389 (496)
Q Consensus 313 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a 389 (496)
.+...|.++.|..+|....+.. +.-...++.|...|-..|++++|+..|++... |+ ...|+.+...|-..|+.+.|
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 7777777777777777766642 22234566677777777777777777776662 22 33566667777777777777
Q ss_pred HHHHhhCCCCCh---hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 010961 390 KHIFRTMPNKSL---ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-KFSLASVISA 445 (496)
Q Consensus 390 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~ 445 (496)
.+.+.+...-++ ..++.|...|-..|++.+|+.-++...+. +|| +..|..++.+
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHH
Confidence 777777665333 35666777777777777777777776663 554 3344444444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-21 Score=178.06 Aligned_cols=288 Identities=15% Similarity=0.133 Sum_probs=235.3
Q ss_pred HHHHHHhcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CC------hhhHHHHHHHHHhc
Q 010961 47 LLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KN------DFSWNMLISGFAKA 116 (496)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~------~~~~~~l~~~~~~~ 116 (496)
....+...|++++|+..|+++.+ | +..++..+...+...|++++|..+++.+.. |+ ...+..+...|.+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34456788999999999999876 3 456788888899999999999999988876 22 24577888899999
Q ss_pred CChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-C---HHHHHHHHHHHHccchHH
Q 010961 117 GELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-D---AFILATVIGACADLAALE 189 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~---~~~~~~ll~~~~~~~~~~ 189 (496)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+. +..+ . ...+..+...+...|+++
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL---GGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 999999999999876 35668899999999999999999999999873 2122 1 224556777888999999
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC--hHHHHHHHHHHHhcCChhHHHHHHHhcC
Q 010961 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD--DFCLSALISGYANCGKMNDARRVFDRTT 265 (496)
Q Consensus 190 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (496)
.|...++++.+.... +...+..+...+.+.|++++|.++++++.+ |+ ..++..++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999886533 456777888999999999999999999884 43 3457888999999999999999999876
Q ss_pred C--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---ccchhhHHHHHHHHHHcCCCchHH
Q 010961 266 D--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS---LGFLEHGKQVHGHACKVGVIDDVI 340 (496)
Q Consensus 266 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 340 (496)
+ |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.+.++.|++.
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5 66667788899999999999999999998875 6888899888877664 558999999999999988777766
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-19 Score=175.45 Aligned_cols=378 Identities=12% Similarity=0.025 Sum_probs=183.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCC
Q 010961 75 WNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGF 149 (496)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 149 (496)
+......+.+.|++++|+..|++... |+...|..+..+|.+.|++++|++.++...+ | +..+|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 44556667777888888888877665 6666777777777778888888877777664 2 34467777777888888
Q ss_pred HHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHH------------
Q 010961 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY------------ 217 (496)
Q Consensus 150 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------------ 217 (496)
+++|+..|...... .+. +......++...... .+........+.... +...+..+...+
T Consensus 210 ~~eA~~~~~~~~~~--~~~--~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 210 YADALLDLTASCII--DGF--RNEQSAQAVERLLKK----FAESKAKEILETKPE-NLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HHHHHHHHHHHHHh--CCC--ccHHHHHHHHHHHHH----HHHHHHHHHHhcCCC-CCCCHHHHHHHHHHccCCcchhhh
Confidence 88887777655442 111 111111111111111 111111111111110 111111111110
Q ss_pred ------------------------HhcCChhhHHHHHHhcCC-----C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCCC
Q 010961 218 ------------------------GKCGDFNSANQVLNMMKE-----P-DDFCLSALISGYANCGKMNDARRVFDRTTDT 267 (496)
Q Consensus 218 ------------------------~~~~~~~~a~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (496)
...+++++|.+.|+...+ | ....|..+...+...|++++|+..|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 112345555555554432 1 1223444445555555555555555554432
Q ss_pred C---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHH
Q 010961 268 S---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344 (496)
Q Consensus 268 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (496)
+ ...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 1 2244444555555555555555555554432 2234444455555555555555555555555443 223344444
Q ss_pred HHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-h-------hHHHHHHHH
Q 010961 345 LLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSL-I-------SWNSMIVGL 411 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~-------~~~~l~~~~ 411 (496)
+..++.+.|++++|+..|++.. +.++..++.+...+...|++++|++.|++... |+. . .++..+..+
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 5555555555555555555444 23344455555555555555555555555432 110 0 011111122
Q ss_pred HhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 412 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
...|++++|.+++++..... +.+...+..+...+...|++++|...+++..+
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22355555555555554432 22233455555555555555555555555444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-19 Score=172.54 Aligned_cols=379 Identities=13% Similarity=0.004 Sum_probs=258.1
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhCCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCC
Q 010961 44 ANRLLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGE 118 (496)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 118 (496)
+......+.+.|++++|+..|++..+ |+...|..+..+|.+.|++++|++.+++..+ | +...+..+..++...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 34555566666666666666666553 5555666666666666666666666666654 2 34456666666666666
Q ss_pred hhHHHHHHhhcCCC---------------------------------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchh
Q 010961 119 LKTARTLFNDMPRR---------------------------------NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165 (496)
Q Consensus 119 ~~~a~~~~~~~~~~---------------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 165 (496)
+++|+..|...... +...+..+.. +....+......-+.+...
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--- 285 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--- 285 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHccCCcchhhhhcccc---
Confidence 66666655443221 1111111111 1111000000000000000
Q ss_pred ccCCcCH-HHHHHHHHH---HHccchHHHHHHHHHHHHHcC-CCc-chhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC
Q 010961 166 ERLQCDA-FILATVIGA---CADLAALEYGKQIHSHILVNG-LDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD 237 (496)
Q Consensus 166 ~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 237 (496)
..|.. ..+..+... ....+++++|.+.++...+.+ ..| ....+..+...+...|++++|+..+++..+ |+
T Consensus 286 --~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 286 --LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred --cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 11110 001111100 123467899999999999875 223 445778888899999999999999999875 44
Q ss_pred -hHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010961 238 -DFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313 (496)
Q Consensus 238 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 313 (496)
...|..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+...
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 55788888999999999999999998765 346788899999999999999999999998863 4456677778888
Q ss_pred HhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc--Cc-hhh-------HHHHHHHHHhc
Q 010961 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--YD-TIL-------LNTMITVYSSC 383 (496)
Q Consensus 314 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~-------~~~l~~~~~~~ 383 (496)
+.+.|++++|...++...+.. +.++..++.+..++...|++++|++.|++... |+ ... ++.....+...
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999998753 55678889999999999999999999998772 21 111 12222334457
Q ss_pred CCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 384 GRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 384 ~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
|++++|..++++..+ | +...+..+...+.+.|++++|++.|++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999998754 3 4457889999999999999999999998875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-18 Score=167.15 Aligned_cols=341 Identities=12% Similarity=0.038 Sum_probs=236.8
Q ss_pred HHhcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQ------KNDFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFARE 152 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~ 152 (496)
+.+..+++.-.-.|+...+ .+......++..+.+.|++++|..+++.... | +...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 4566777777777776654 2233344556667788888888888887764 2 45566677777778888888
Q ss_pred HHHHHHHHHHchhccCCcC-HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHH
Q 010961 153 AVRLFKELNSDLVERLQCD-AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 231 (496)
|++.|+++.. ..|+ ...+..+...+...|+++.|...++.+.+.... +...+..+...+...|++++|...++
T Consensus 95 A~~~l~~~l~-----~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 95 VLQVVNKLLA-----VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHH-----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 8888888877 4443 456666777788888888888888888876433 55677778888888888888888887
Q ss_pred hcCC--CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC----cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 010961 232 MMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305 (496)
Q Consensus 232 ~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 305 (496)
.+.. |+.......+..+...|++++|...++++.+.+ ...+..+...+...|++++|+..+++..+.. +.+..
T Consensus 169 ~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 169 TQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred HHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 6642 333222222334677788888888887765532 2234445567777888888888888877653 34556
Q ss_pred HHHHHHHHHhcccchhh----HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHH
Q 010961 306 TLASVLSACSSLGFLEH----GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMIT 378 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~ 378 (496)
.+..+...+...|++++ |...++.+.+.. +.+...+..+...+...|++++|...+++.. +.++..+..+..
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66667777777787775 677777777754 3456677777888888888888888887766 334556666777
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CChhh-HHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 379 VYSSCGRIEDAKHIFRTMPN--KSLIS-WNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
++.+.|++++|...|+++.. |+... +..+..++...|+.++|...|++..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77788888888888777764 43322 333456677778888888888877765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-18 Score=159.66 Aligned_cols=475 Identities=15% Similarity=0.085 Sum_probs=250.8
Q ss_pred HHHHhhhhc--cCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHH---H
Q 010961 9 ARLLQSCNT--HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF---M 83 (496)
Q Consensus 9 ~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~---~ 83 (496)
..+.++|.. .+++..|..+|..++...+.-.+. ..-.+...+.+.|+.+.|+..|.+..+-|+...++++... .
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD-~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACKAD-VRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDL 244 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC-ccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 344566553 578888888888877655433332 3334455556777888877777777653332222222111 1
Q ss_pred h---cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCC------cccHHHHHHHHHHcCCHH
Q 010961 84 K---LGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPRRN------AIAWNSMIHCYVRNGFAR 151 (496)
Q Consensus 84 ~---~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~~~~~ 151 (496)
. ...+..+..++..... .|+...+.|.+.|.-.|+++.+..+...+.... ..+|..+.++|-..|+++
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH
Confidence 1 1123333333333322 334444444444444444444444444443211 123444444444445555
Q ss_pred HHHHHHHHHHHchhccCCcCHH--HHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC----Chhh
Q 010961 152 EAVRLFKELNSDLVERLQCDAF--ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG----DFNS 225 (496)
Q Consensus 152 ~a~~~~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~ 225 (496)
+|...|.+..+ ..|+.. .+.-+...+.+.|+.+.+...|+...+..+. +..+...|...|...+ ..+.
T Consensus 325 kA~~yY~~s~k-----~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 325 KAFKYYMESLK-----ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred HHHHHHHHHHc-----cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHH
Confidence 55444444433 222221 2222334444444444444444444443221 2333333444333332 2233
Q ss_pred HHHHHHhcCC-----------------------------------------CChHHHHHHHHHHHhcCChhHHHHHHHhc
Q 010961 226 ANQVLNMMKE-----------------------------------------PDDFCLSALISGYANCGKMNDARRVFDRT 264 (496)
Q Consensus 226 a~~~~~~~~~-----------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (496)
|..++.+..+ +.+...|.+...+...|+++.|...|.+.
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 3333333332 33334444444444555555555544433
Q ss_pred CCC-------Ccc------hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhcccchhhHHHHHHHH
Q 010961 265 TDT-------SSV------MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS-VLSACSSLGFLEHGKQVHGHA 330 (496)
Q Consensus 265 ~~~-------~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~ 330 (496)
... +.. +--.+....-..++++.|.+.|+.+.+. .|+-..... +.......+...+|...+.+.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHH
Confidence 221 110 0111222233334445555555554443 233222111 111111234445555555555
Q ss_pred HHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc-----cCchhhHHHHHHHHH------------hcCCHHHHHHHH
Q 010961 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-----VYDTILLNTMITVYS------------SCGRIEDAKHIF 393 (496)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~------------~~~~~~~a~~~~ 393 (496)
...+ ..++..++.+...+.....+..|.+-|..+. .+|+.+.-+|.+.+. ..+..++|+++|
T Consensus 557 l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 557 LNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred Hhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 4432 3334444444455555555555555443333 234444445555443 234567889999
Q ss_pred hhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH-HcCCCc
Q 010961 394 RTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDS 469 (496)
Q Consensus 394 ~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~ 469 (496)
.++.+ .|...-|-+.-.++..|++.+|..+|.+.++.. .-+..+|..+..+|...|++..|.++|+... +....-
T Consensus 636 ~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~ 714 (1018)
T KOG2002|consen 636 GKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKN 714 (1018)
T ss_pred HHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 88776 366777888889999999999999999999875 3456689999999999999999999999654 455666
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 470 DQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
++.+...|.+++.++|++.+|.+.+
T Consensus 715 ~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 715 RSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8899999999999999999998865
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-17 Score=163.44 Aligned_cols=385 Identities=11% Similarity=0.036 Sum_probs=194.7
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC
Q 010961 44 ANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAG 117 (496)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 117 (496)
..-.+......|+.++|++++..... .+...+..+..++...|++++|.+++++..+ .+...+..++..+...|
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 34445555555666666655555443 1223355555555555666666666555432 22334444555555555
Q ss_pred ChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC-HHHHHHHHHHHHccchHHHHHH
Q 010961 118 ELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD-AFILATVIGACADLAALEYGKQ 193 (496)
Q Consensus 118 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 193 (496)
++++|+..+++..+ | +.. +..+..++...|+.++|+..+++..+ ..|+ ...+..+..++...+..+.|..
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~-----~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP-----RAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 55555555555442 2 223 44555555555555555555555555 2232 2223333344444444444444
Q ss_pred HHHHHHHcCCCcch------hHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCCh---hHHHHHHHhc
Q 010961 194 IHSHILVNGLDFDS------VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM---NDARRVFDRT 264 (496)
Q Consensus 194 ~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~ 264 (496)
.++...+ .|+. .....++......+. ...+++ ++|++.++.+
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~--------------------------~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTR--------------------------SEKERYAIADRALAQYDAL 222 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc--------------------------ChhHHHHHHHHHHHHHHHH
Confidence 4443332 1110 000111111110000 011112 3444444444
Q ss_pred CC-----CCcc-hH----HHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhcccchhhHHHHHHHHHHc
Q 010961 265 TD-----TSSV-MW----NSMISGYISNNEDTEALLLFHKMRRNGVL-EDASTLASVLSACSSLGFLEHGKQVHGHACKV 333 (496)
Q Consensus 265 ~~-----~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 333 (496)
.+ |+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+.. ...+...+...|++++|...++.+.+.
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 31 1111 01 01122334556666677766666665421 2221 111344566666677777766666553
Q ss_pred CCCc---hHHHHHHHHHHHHhcCChhhHHHHHHhcccC---------------c---hhhHHHHHHHHHhcCCHHHHHHH
Q 010961 334 GVID---DVIVASALLDTYSKRGMPSDACKLFSELKVY---------------D---TILLNTMITVYSSCGRIEDAKHI 392 (496)
Q Consensus 334 ~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~---~~~~~~l~~~~~~~~~~~~a~~~ 392 (496)
.... .......+..++...|++++|...++.+... + ...+..+...+...|++++|+++
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2111 1233444555566667777777666665521 1 11234455666677777777777
Q ss_pred HhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 393 FRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 393 ~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
++++.. | +...+..+...+...|++++|++.+++..+.. |.+...+......+...|++++|..+++.+++.
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777654 3 45566777777777778888888887777752 223555666666677777788888887777663
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-16 Score=156.53 Aligned_cols=411 Identities=9% Similarity=0.023 Sum_probs=289.0
Q ss_pred HHHHHHhcCChHHHHHHhhhCCCCChh---hHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhH-HHH--HHHHHhcCChh
Q 010961 47 LLQMYMRCGNPTDALLLFDEMPRRNCF---SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW-NML--ISGFAKAGELK 120 (496)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~l--~~~~~~~~~~~ 120 (496)
-+-...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++...|+...+ ..+ ...+...|+++
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 344466889999999999998863332 233788888888999999999999987644433 333 45777889999
Q ss_pred HHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHH
Q 010961 121 TARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197 (496)
Q Consensus 121 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 197 (496)
+|+++|+++.+ | +...+..++..+...++.++|++.++++.. ..|+...+..++..+...++...|.+.+++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~-----~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE-----RDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc-----cCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999875 3 456677778888899999999999999977 567766665555555556666669999999
Q ss_pred HHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CChHHH------HHHHHHH-H----hcCC---hhHHHHH
Q 010961 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCL------SALISGY-A----NCGK---MNDARRV 260 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~------~~l~~~~-~----~~~~---~~~a~~~ 260 (496)
+.+..+. +...+..++....+.|-...|.++..+-++ +....+ ...++.- . ...+ .+.|..-
T Consensus 195 ll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 195 AVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 9987643 677778888888999999999888877653 111111 1111110 0 1111 2334444
Q ss_pred HHhcCC-----CCcc-----hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHH
Q 010961 261 FDRTTD-----TSSV-----MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330 (496)
Q Consensus 261 ~~~~~~-----~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 330 (496)
++.+.. |... ..--.+-++...|++.++++.|+.+...|.+.-..+-..+..+|...+++++|..++..+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 444333 2111 122344567788889999999999988876645557778888888999999999999988
Q ss_pred HHcC-----CCchHHHHHHHHHHHHhcCChhhHHHHHHhccc--C-------------ch---hhHHHHHHHHHhcCCHH
Q 010961 331 CKVG-----VIDDVIVASALLDTYSKRGMPSDACKLFSELKV--Y-------------DT---ILLNTMITVYSSCGRIE 387 (496)
Q Consensus 331 ~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-------------~~---~~~~~l~~~~~~~~~~~ 387 (496)
.... ..++......|.-+|...+++++|..+++.+.. | |+ ..+..++..+.-.|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 7643 123444457788888889999999998888872 1 11 12344566677788888
Q ss_pred HHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 010961 388 DAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVT 463 (496)
Q Consensus 388 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (496)
+|++.++++.. | |......+...+...|.+.+|.+.++..... .| +..+......++...|++++|..+.+.+.
T Consensus 434 ~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 434 TAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88888888765 3 5667777888888888888888888666654 44 55667777777788888888888887776
Q ss_pred Hc
Q 010961 464 II 465 (496)
Q Consensus 464 ~~ 465 (496)
+.
T Consensus 512 ~~ 513 (822)
T PRK14574 512 SR 513 (822)
T ss_pred hh
Confidence 64
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-18 Score=166.68 Aligned_cols=320 Identities=11% Similarity=0.032 Sum_probs=240.6
Q ss_pred hhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--C-ChhhHHHHHHHH
Q 010961 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIEGF 82 (496)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 82 (496)
.-+..++..+..+|+++.|..+++..+...+.+.. ++..++......|++++|+..|+++.+ | +...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~--~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD--LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh--HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34566778888899999999999999888754444 566677777789999999999998865 3 456788888888
Q ss_pred HhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHhhcCC--CCc-ccHHHHHHHHHHcCCHHHHHHH
Q 010961 83 MKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGELKTARTLFNDMPR--RNA-IAWNSMIHCYVRNGFAREAVRL 156 (496)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~ 156 (496)
.+.|++++|.+.++++.+ | +...+..+...+...|++++|...++.+.. |+. ..+..+ ..+...|++++|...
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 899999999999988876 3 456777888888999999999988887643 333 333333 347888999999999
Q ss_pred HHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhh----HHHHHHh
Q 010961 157 FKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS----ANQVLNM 232 (496)
Q Consensus 157 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~ 232 (496)
++.+.+. ...++......+..++...|++++|...++.+.+.... +...+..+...+...|++++ |...+++
T Consensus 200 ~~~~l~~---~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 200 ARALLPF---FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHhc---CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9888762 11233344455567778889999999999998876543 56677788888888898885 7888887
Q ss_pred cCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-H
Q 010961 233 MKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD--T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA-S 305 (496)
Q Consensus 233 ~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~ 305 (496)
..+ | +...+..+...+...|++++|...+++..+ | +...+..+...+.+.|++++|+..|+.+... .|+. .
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~ 353 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSK 353 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchH
Confidence 764 3 355778888888888999999888887665 3 3446677778888889999999888888775 3443 2
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcC
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVG 334 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 334 (496)
.+..+..++...|+.++|...|+.+.+..
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33334566778888999998888887764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-17 Score=161.21 Aligned_cols=392 Identities=10% Similarity=-0.047 Sum_probs=272.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHH
Q 010961 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCY 144 (496)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~ 144 (496)
+.....-.+......|+.++|++++++... .+...+..+...+.+.|++++|.+.|++..+ | +...+..+..++
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 334445556667778888888888877764 3334577777788888888888888887543 3 455667777778
Q ss_pred HHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChh
Q 010961 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224 (496)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (496)
...|++++|+..+++..+. .+.+.. +..+..++...|+.+.|...++++.+..+. +...+..+..++...|..+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 8888888888888888762 222334 666667777788888888888888776544 4445555666777777777
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHH-----HhCCCH---HHHHHHHHHHH
Q 010961 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY-----ISNNED---TEALLLFHKMR 296 (496)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~---~~a~~~~~~m~ 296 (496)
.|++.++.... ++.....+ .. ......+... ...+++ ++|++.++.+.
T Consensus 168 ~Al~~l~~~~~-~p~~~~~l--------~~---------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 168 PALGAIDDANL-TPAEKRDL--------EA---------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHH--------HH---------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 77777776665 21100000 00 0011111111 122334 78888999888
Q ss_pred HC-CCCCCHH-HHH----HHHHHHhcccchhhHHHHHHHHHHcCCC-chHHHHHHHHHHHHhcCChhhHHHHHHhcccCc
Q 010961 297 RN-GVLEDAS-TLA----SVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369 (496)
Q Consensus 297 ~~-g~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 369 (496)
+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+- ....+..+|...|++++|+..|+++...+
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 64 2233221 111 1133456779999999999999987632 332 22235778999999999999999986322
Q ss_pred -------hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------------C---hhhHHHHHHHHHhCCChhhHHHHH
Q 010961 370 -------TILLNTMITVYSSCGRIEDAKHIFRTMPN--K-------------S---LISWNSMIVGLSQNGSPIEALDLF 424 (496)
Q Consensus 370 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-------------~---~~~~~~l~~~~~~~g~~~~a~~~~ 424 (496)
......+..++...|++++|...++.+.+ | + ...+..+...+...|+.++|++.+
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23455667788999999999999998765 2 1 124456778888999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 425 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+++.... +-+...+..+...+...|++++|++.+++.....+ -+...+..++..+.+.|++++|.++++
T Consensus 383 ~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 383 RELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9998862 55778899999999999999999999999988542 246777788889999999999999875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-16 Score=150.20 Aligned_cols=452 Identities=13% Similarity=0.089 Sum_probs=316.6
Q ss_pred CccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCC------hhhHHHHHHHHHhcCCHHHHH
Q 010961 19 HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN------CFSWNAMIEGFMKLGHKEKSL 92 (496)
Q Consensus 19 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~ 92 (496)
..+..+..++...-+-. +..+.+.+.|.+.|...|++..+..+...+...+ ..+|.-+.++|...|++++|.
T Consensus 250 ~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 34555555555555544 3333377888888888888888888877776522 245777888888888888888
Q ss_pred HHHhhCCC--CCh--hhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 010961 93 QLFNVMPQ--KND--FSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNG----FAREAVRLFKELN 161 (496)
Q Consensus 93 ~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~----~~~~a~~~~~~~~ 161 (496)
..|-+..+ +|. ..+--|...+.+.|+++.+...|+.+.+ | +..+...|...|...+ ..++|..++.+..
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 88877766 333 3345567788888888888888888875 3 3445556666666554 4566777766666
Q ss_pred HchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHH----HHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--
Q 010961 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSH----ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-- 235 (496)
Q Consensus 162 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 235 (496)
+. ...|...|..+...+....-+ ..+..+.. +...+-.+.+...|.+...+...|++.+|...|+....
T Consensus 408 ~~----~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 408 EQ----TPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred hc----ccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 52 344556666666665544333 33554443 44566667888999999999999999999999987652
Q ss_pred -----CCh------HHHHHHHHHHHhcCChhHHHHHHHhcCCCCc---chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 010961 236 -----PDD------FCLSALISGYANCGKMNDARRVFDRTTDTSS---VMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301 (496)
Q Consensus 236 -----~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 301 (496)
++. .+-..+....-..++.+.|.+.|..+....+ ..|--++......+...+|...++...... .
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~ 561 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-S 561 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-c
Confidence 222 2233455666777899999999998876332 244444433344578889999998887652 3
Q ss_pred CCHHHHHHHHHHHhcccchhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHh------------cCChhhHHHHHHhcc--
Q 010961 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSK------------RGMPSDACKLFSELK-- 366 (496)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~-- 366 (496)
.++..+..+...+.....+..|.+-|....+.- ..+|..+..+|.+.|.. .+..++|+++|.++.
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc
Confidence 334444445556777777778888777666542 23566666666665543 234677889988877
Q ss_pred -cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhC-CCCCCHHHHHH
Q 010961 367 -VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLAS 441 (496)
Q Consensus 367 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ 441 (496)
+.|...-|-+.-.++..|+++.|..+|.++.+ ....+|-.+.++|...|++..|+++|+...+. .-..+......
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 45666778888999999999999999999886 35578999999999999999999999986554 44557888999
Q ss_pred HHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
|.+++.+.|.+.+|.+.+.......+.-....+|..+
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 9999999999999999998887755444445555433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-15 Score=131.74 Aligned_cols=436 Identities=14% Similarity=0.119 Sum_probs=298.4
Q ss_pred hhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHh--cCChHHH-HHHhhhCCC---CChhhHHHHHHHHHhcCCH
Q 010961 15 CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR--CGNPTDA-LLLFDEMPR---RNCFSWNAMIEGFMKLGHK 88 (496)
Q Consensus 15 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A-~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 88 (496)
...+|.++.+.-+|+.|.+.|.+.+.. +-..|++.-+- ..++.-| .+.|-.|.. ....+| +.|..
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~k-vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEK-VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHH-HHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccH
Confidence 345677888889999999988777765 66666664333 3333222 234444443 233344 34444
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCC----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHch
Q 010961 89 EKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164 (496)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 164 (496)
.+ ++-+.......++.++|.++|+-...+.|.+++++.... +..+||.+|.+-.-.. -.+++.+|..
T Consensus 196 Ad---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMis-- 266 (625)
T KOG4422|consen 196 AD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMIS-- 266 (625)
T ss_pred HH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHH--
Confidence 33 666666677889999999999999999999999998753 6678888887654332 2678899988
Q ss_pred hccCCcCHHHHHHHHHHHHccchHH----HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhh-HHHHHHhcC-----
Q 010961 165 VERLQCDAFILATVIGACADLAALE----YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS-ANQVLNMMK----- 234 (496)
Q Consensus 165 ~~~~~p~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~----- 234 (496)
..+.||..|+|+++++.++.|+++ .+.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++.
T Consensus 267 -qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 267 -QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred -hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 679999999999999999999776 456788999999999999999999999999888755 444544443
Q ss_pred ---C----CChHHHHHHHHHHHhcCChhHHHHHHHhcCC--------CC---cchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010961 235 ---E----PDDFCLSALISGYANCGKMNDARRVFDRTTD--------TS---SVMWNSMISGYISNNEDTEALLLFHKMR 296 (496)
Q Consensus 235 ---~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 296 (496)
+ .|...+...+..|.+..+.+.|.++-.-... ++ ..-|..+....|+....+.-+..|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 2345677778888899998888877654332 22 3356667778888899999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC-Chh-hHHHHHHhcccCchhhHH
Q 010961 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-MPS-DACKLFSELKVYDTILLN 374 (496)
Q Consensus 297 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~a~~~~~~~~~~~~~~~~ 374 (496)
.+-.-|+..+...++++....|.++-..++|.++...|..........++..+++.. ++. -+.+-|..
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~---------- 495 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQV---------- 495 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHH----------
Confidence 988889999999999999999999999999999999886666555555555555544 110 11111111
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCC----CCCHHHHHHHHHHHhc
Q 010961 375 TMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL----RMDKFSLASVISACAN 448 (496)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~l~~~~~~ 448 (496)
...-++ ..-.+..+..-.++.+ -.....+...-.+.+.|+.++|.+++..+.+.+- .|......-++++..+
T Consensus 496 -~~ak~a-ad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 496 -AFAKCA-ADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred -HHHHHH-HHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 000000 0000011111112222 2334566666777888888899888888855432 2333444566777777
Q ss_pred cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
.+++-.|...++.|...+.+.-...-+-+.+.|
T Consensus 574 ~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLASAFNLPICEGLAQRIMEDF 606 (625)
T ss_pred cCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhc
Confidence 888888888888887766543333444444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-15 Score=150.04 Aligned_cols=406 Identities=10% Similarity=-0.008 Sum_probs=306.0
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CChh-hHHHHHHHHHhcCChhHHHHHHhhcCCCCcc-cHHHH--HHHHHHcCCHHHHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQ--KNDF-SWNMLISGFAKAGELKTARTLFNDMPRRNAI-AWNSM--IHCYVRNGFAREAV 154 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~a~ 154 (496)
...+.|+++.|++.|++..+ |+.. ....++..+...|+.++|+..+++...|+.. .+..+ ...+...|++++|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45789999999999999987 4431 2237888888999999999999999976443 44444 45788889999999
Q ss_pred HHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 010961 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
++|+++.+. .+-+...+..++..+...++.++|++.++.+.+.. |+...+..++..+...++..+|+..++++.
T Consensus 123 ely~kaL~~----dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 123 ALWQSSLKK----DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHhh----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999983 22335666677888899999999999999998764 445555555555555667767999999988
Q ss_pred C--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchH------HHHHHHH---H--hCC---CHHHHHHHHHH
Q 010961 235 E--P-DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMW------NSMISGY---I--SNN---EDTEALLLFHK 294 (496)
Q Consensus 235 ~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~------~~l~~~~---~--~~~---~~~~a~~~~~~ 294 (496)
+ | +...+..+.....+.|-...|.++..+-++ +....+ ...++.- . ... -.+.|+.-++.
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 5 5 466778889999999999999999887553 111000 1111100 0 112 24556666666
Q ss_pred HHHC-CCCCC-HH----HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccC
Q 010961 295 MRRN-GVLED-AS----TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368 (496)
Q Consensus 295 m~~~-g~~~~-~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 368 (496)
+... +-.|. .. ...-.+-++...|+..++...++.+...+.+....+-..+.++|...+.+++|..+|..+..+
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 6552 22232 22 222445577889999999999999999887766668889999999999999999999998632
Q ss_pred ---------chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------------Ch---hhHHHHHHHHHhCCChhhHH
Q 010961 369 ---------DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-------------SL---ISWNSMIVGLSQNGSPIEAL 421 (496)
Q Consensus 369 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-------------~~---~~~~~l~~~~~~~g~~~~a~ 421 (496)
+......|..++...+++++|..+++.+.+ | |. ..+..++..+...|+..+|.
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 122246789999999999999999998865 2 11 23455678888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
+.++++.... |-|......+...+...|.+..|++.++...... +-+..+....+.++...|++.+|.+++
T Consensus 437 ~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 437 KKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999998763 5688999999999999999999999998776653 235677788899999999999998776
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-17 Score=140.87 Aligned_cols=442 Identities=14% Similarity=0.118 Sum_probs=288.8
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CC------hhhH
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RN------CFSW 75 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~------~~~~ 75 (496)
.-..+..|.+.|.......+|...|+.+.+..+.|+.-..-..+...+.+.+.+.+|++.|..... |. ....
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 345567778888888999999999999999999888864555677788899999999999886653 32 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChhHHHHHHhhcCC----CC--------cccHHHHH
Q 010961 76 NAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKAGELKTARTLFNDMPR----RN--------AIAWNSMI 141 (496)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~--------~~~~~~li 141 (496)
+.+...+.+.|.++.|+..|+...+ ||..+-..|+-++...|+-++..+.|..|.. +| ......|+
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 6666678899999999999998876 8877766677777778999999999998863 11 11122222
Q ss_pred HHHHHc---------C--CHHHHHHHHHHHHHchhccCCcCHHH-HHH--------------------HHHHHHccchHH
Q 010961 142 HCYVRN---------G--FAREAVRLFKELNSDLVERLQCDAFI-LAT--------------------VIGACADLAALE 189 (496)
Q Consensus 142 ~~~~~~---------~--~~~~a~~~~~~~~~~~~~~~~p~~~~-~~~--------------------ll~~~~~~~~~~ 189 (496)
.--.+. + +.++++-.-.++.. .-+.|+-.. +.. -..-+.+.|+++
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiia---pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIA---PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc---cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 222221 1 12222222222221 122332110 000 012244566777
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHh--cCChhhHHHHHHhcCCCC---hHHHHHHHHHHHhcCChhHHHHHHHhc
Q 010961 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGK--CGDFNSANQVLNMMKEPD---DFCLSALISGYANCGKMNDARRVFDRT 264 (496)
Q Consensus 190 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (496)
.|.+++.-+.+..-+.-+..-+.|...+.- ..++..|.++-+.....| ......-.+....+|++++|.+.+++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 777777766655433333333333333332 334555555555544322 222222222334567888888888888
Q ss_pred CCCCcchHHHHH---HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHH
Q 010961 265 TDTSSVMWNSMI---SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341 (496)
Q Consensus 265 ~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 341 (496)
...|...-.++. -.+-..|+.++|+..|-++... +.-+..+...+.+.|....+..+|.+++.+.... ++.|+.+
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 777655433333 3456678888888888776543 3445566667777777778888888887766553 5667788
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHH-hCC
Q 010961 342 ASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVGLS-QNG 415 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~-~~g 415 (496)
.+.|...|-+.|+-.+|.+.+-+-- +.+..+...|..-|....-+++++..|++.. +|+..-|..|+..|. +.|
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 8888888888888888887655433 6677777777777888888888888888753 688888888776655 468
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 416 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
++.+|.++++....+ ++.|...+..|++.|...|-
T Consensus 675 nyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 888888888887765 56677888888887776663
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-13 Score=124.53 Aligned_cols=449 Identities=13% Similarity=0.083 Sum_probs=286.5
Q ss_pred HHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhC---CCCChhhHHHHHHHHHhcCC
Q 010961 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM---PRRNCFSWNAMIEGFMKLGH 87 (496)
Q Consensus 11 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 87 (496)
....+...|++++|.+++.+.++..+ ..+..|.+|...|...|+.+++...+-.+ ...|...|-.+.....+.|+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 33444456999999999999999874 44447999999999999999998866543 34577889999999999999
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCc----c----cHHHHHHHHHHcCCHHHHHHH
Q 010961 88 KEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNA----I----AWNSMIHCYVRNGFAREAVRL 156 (496)
Q Consensus 88 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~~~~~~a~~~ 156 (496)
++.|.-.|.+..+ ++...+---+..|-+.|+...|.+-|.++..-++ . .-...+..+...++.+.|++.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999887 3444444456678889999999988888875322 1 122345566677777888888
Q ss_pred HHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc---------------------------CCCcchhH
Q 010961 157 FKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN---------------------------GLDFDSVL 209 (496)
Q Consensus 157 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~~ 209 (496)
++..... .+-..+...+++++..+.....++.+......+... +..++..+
T Consensus 303 le~~~s~--~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 303 LEGALSK--EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHhh--ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 8877663 234455566778888888888888887777766651 12222222
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcCC------CChHHHHHHHHHHHhcCChhHHHHHHHhcCC----CCcchHHHHHHHH
Q 010961 210 GSSLVNLYGKCGDFNSANQVLNMMKE------PDDFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGY 279 (496)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~ 279 (496)
-.++-++...+..+....+...+.+ .++..|.-+..++...|++..|+++|..+.. .+...|-.+..+|
T Consensus 381 -~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 -IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred -HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1222233333333333333332222 3455677788888888999999988888775 3456788888888
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHH--------HcCCCchHHHHHHHHHHHHh
Q 010961 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC--------KVGVIDDVIVASALLDTYSK 351 (496)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~ 351 (496)
...|.++.|++.|+...... +-+...-..|-..+.+.|+.++|.+++..+. ..+..|+....-...+.+..
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 88888999988888888752 2233344455556778888888888888743 23345556666666677777
Q ss_pred cCChhhHHHHHHhccc--------------------------CchhhHHHHHHHHHhcCCHHHHHHHHhhCC--------
Q 010961 352 RGMPSDACKLFSELKV--------------------------YDTILLNTMITVYSSCGRIEDAKHIFRTMP-------- 397 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~~--------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------- 397 (496)
.|+.++=...-..|.. ........++.+-.+.++.....+-...-.
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 7777664433333220 011122223333333333222222111110
Q ss_pred C---CCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhCCC--CCCH---HHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 398 N---KSL-ISWNSMIVGLSQNGSPIEALDLFCNMNKLDL--RMDK---FSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 398 ~---~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
. .+. ..+.-++..+++.+++++|+.+...+..... .++. ..=...+.++...+++..|...++.|+..
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0 111 2344567777788888888888887776432 1111 12223444556778888888888877653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-12 Score=117.07 Aligned_cols=464 Identities=12% Similarity=0.072 Sum_probs=318.4
Q ss_pred HHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcC
Q 010961 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLG 86 (496)
Q Consensus 10 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 86 (496)
.|.++.+....++.|..++....+.= |.+. .|.-+|.+..-++.|..+++...+ .+...|-+-...=-.+|
T Consensus 381 ~LWKaAVelE~~~darilL~rAvecc--p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ng 454 (913)
T KOG0495|consen 381 RLWKAAVELEEPEDARILLERAVECC--PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANG 454 (913)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHhc--cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcC
Confidence 34555555666666666666666642 3332 344556666667777777776654 36666666665556677
Q ss_pred CHHHHHHHHhhCCC--------CChhhHHHHHHHHHhcCChhHHHHHHhhcCC------CCcccHHHHHHHHHHcCCHHH
Q 010961 87 HKEKSLQLFNVMPQ--------KNDFSWNMLISGFAKAGELKTARTLFNDMPR------RNAIAWNSMIHCYVRNGFARE 152 (496)
Q Consensus 87 ~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~ 152 (496)
+.+...+++.+... -+...|..=...|-+.|.+-.+..+...... .--.+|..-...|.+.+.++-
T Consensus 455 n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~c 534 (913)
T KOG0495|consen 455 NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIEC 534 (913)
T ss_pred CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHH
Confidence 77777777665432 2344455555555555555555555554432 123477777788888888888
Q ss_pred HHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHH
Q 010961 153 AVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 231 (496)
|..+|....+ +-| +...|......--..|..+....++++++..-++ ....+......+...|++..|..++.
T Consensus 535 arAVya~alq-----vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 535 ARAVYAHALQ-----VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred HHHHHHHHHh-----hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 8888888877 444 4455666666666678888888888888876543 44555556666777899999998888
Q ss_pred hcCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HH
Q 010961 232 MMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-AS 305 (496)
Q Consensus 232 ~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~ 305 (496)
...+ | +...|-.-+..-..+..++.|..+|.+... ++...|.--+..---.++.++|++++++..+. -|+ ..
T Consensus 609 ~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~K 686 (913)
T KOG0495|consen 609 QAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHK 686 (913)
T ss_pred HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHH
Confidence 8765 3 455788888888889999999999987654 55667766666666778889999999888775 444 44
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHh
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSS 382 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 382 (496)
.|..+.+.+.+.++++.|...|..-.+. ++..+..|..|...--+.|.+-.|..++++.. +.+...|-..|..-.+
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR 765 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 5666666777888888888888765543 45566677778888888888999999998877 5577788899999999
Q ss_pred cCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHH
Q 010961 383 CGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459 (496)
Q Consensus 383 ~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (496)
.|+.+.|..++.+..+ | +...|.--|....+.++-......+++ ..-|++....+...+.....+++|...|
T Consensus 766 ~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877665 3 334566666666666554444444433 2446667777777777777888888888
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 460 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
.+....+.. .-.+|..+...+.+.|.-++-.+++
T Consensus 841 ~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 841 ERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred HHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHH
Confidence 877764422 3467777777777888666655554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-13 Score=119.65 Aligned_cols=399 Identities=12% Similarity=0.105 Sum_probs=266.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC----CChhhH-HHHHHHHHhcCChhHHHHHHhhcCC--CC------cccHHHHHHH
Q 010961 77 AMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSW-NMLISGFAKAGELKTARTLFNDMPR--RN------AIAWNSMIHC 143 (496)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~--~~------~~~~~~li~~ 143 (496)
.|.+-|.......+|+..++-+.+ ||.-.. -.+.+.+.+..++.+|+++++-... |+ +...+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344555556667778777777665 443221 2234556777788888888776553 21 2244555556
Q ss_pred HHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCc------------chhHHH
Q 010961 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF------------DSVLGS 211 (496)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~ 211 (496)
+.+.|.++.|+..|+...+ ..|+-.+-..|+-++.-.|+.++..+.|..|+.-...| +....+
T Consensus 286 fiq~gqy~dainsfdh~m~-----~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCME-----EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred EEecccchhhHhhHHHHHH-----hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 7788888888888888877 56777666566666666788888888888887643222 222222
Q ss_pred HH-----HHHHHhcC--ChhhHHHHHHhc----CCCChHH---HH------------------HHHHHHHhcCChhHHHH
Q 010961 212 SL-----VNLYGKCG--DFNSANQVLNMM----KEPDDFC---LS------------------ALISGYANCGKMNDARR 259 (496)
Q Consensus 212 ~l-----~~~~~~~~--~~~~a~~~~~~~----~~~~~~~---~~------------------~l~~~~~~~~~~~~a~~ 259 (496)
.. +.-+-+.+ +-++++-.--++ ..|+-.. |. .-...+.+.|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 21 11122211 112222111111 2232110 10 01122678888888888
Q ss_pred HHHhcCCCCcc-----------------------------------hHHHHH-----HHHHhCCCHHHHHHHHHHHHHCC
Q 010961 260 VFDRTTDTSSV-----------------------------------MWNSMI-----SGYISNNEDTEALLLFHKMRRNG 299 (496)
Q Consensus 260 ~~~~~~~~~~~-----------------------------------~~~~l~-----~~~~~~~~~~~a~~~~~~m~~~g 299 (496)
++.-..+.|.. -||.-. +.....|++++|.+.|++.....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 87655443211 111111 11224688999999999988765
Q ss_pred CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHH
Q 010961 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTM 376 (496)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l 376 (496)
-.-....|++=+ .+...|++++|...|-.+... +..+..+...+...|....++.+|++++.+.. +.|+.+..-|
T Consensus 521 asc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl 598 (840)
T KOG2003|consen 521 ASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKL 598 (840)
T ss_pred hHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 444444444333 356789999999998776543 23466777788889999999999999998766 7789999999
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCch
Q 010961 377 ITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA-NISSL 452 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~ 452 (496)
...|-+.|+-..|.+.+-.--+ -+..+...|...|....-+++++.+|++..- ++|+..-|..++..|. +.|++
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccH
Confidence 9999999999999987766554 4777888888888888899999999998765 5999999999988775 57999
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 453 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
.+|..+++...+ .++-|......|++.+...|
T Consensus 677 qka~d~yk~~hr-kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 677 QKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHH-hCccchHHHHHHHHHhcccc
Confidence 999999998865 36778899999998887776
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-12 Score=123.64 Aligned_cols=426 Identities=12% Similarity=0.065 Sum_probs=292.7
Q ss_pred Cc-chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCC---ChhhHHH
Q 010961 2 DT-RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR---NCFSWNA 77 (496)
Q Consensus 2 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 77 (496)
|| ++..|..|...+-+.|+.+.+.. .+++.+...|...+.|..+.....+.|+++.|.-+|.+..+. +...+--
T Consensus 169 dp~~~~ay~tL~~IyEqrGd~eK~l~--~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~e 246 (895)
T KOG2076|consen 169 DPRNPIAYYTLGEIYEQRGDIEKALN--FWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYE 246 (895)
T ss_pred CccchhhHHHHHHHHHHcccHHHHHH--HHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHH
Confidence 55 67889999999999998887765 556666666777789999999999999999999999999873 4444445
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCh--------hhHHHHHHHHHhcCChhHHHHHHhhcCC-----CCcccHHHHHHHH
Q 010961 78 MIEGFMKLGHKEKSLQLFNVMPQKND--------FSWNMLISGFAKAGELKTARTLFNDMPR-----RNAIAWNSMIHCY 144 (496)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~ 144 (496)
-+..|-+.|+...|.+-|.++.+.++ ..-...++.+...++-+.|.+.++.... -+...++.++..+
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~ 326 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELF 326 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 56788899999999999999987222 2223345566667777899988888765 2456789999999
Q ss_pred HHcCCHHHHHHHHHHHHHc------------------------hhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 010961 145 VRNGFAREAVRLFKELNSD------------------------LVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200 (496)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~------------------------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (496)
.+...++.|......+... -..+..++... ..+.-++.+.+..+....+.....+
T Consensus 327 l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~ 405 (895)
T KOG2076|consen 327 LKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVE 405 (895)
T ss_pred HHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHH
Confidence 9999999999988888661 00112233333 1223344566666677777777777
Q ss_pred cCCC--cchhHHHHHHHHHHhcCChhhHHHHHHhcCC----CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcch---
Q 010961 201 NGLD--FDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM--- 271 (496)
Q Consensus 201 ~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 271 (496)
.... -+...|..+..++...|.+.+|+.+|..+.. .+...|-.+..+|...|..+.|++.|+.+....+..
T Consensus 406 ~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~ 485 (895)
T KOG2076|consen 406 DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDA 485 (895)
T ss_pred hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhh
Confidence 7743 3566889999999999999999999999874 456789999999999999999999999988744443
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcC-----CCc-
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMR--------RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG-----VID- 337 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~- 337 (496)
--.|...+.+.|++++|.+.+..+. ..+..|+..........+...|+.++-..+-..|+... +-|
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~ 565 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPR 565 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4445567889999999999999864 22345555555556666777787776555544443311 001
Q ss_pred ----------------hHHHHHHHHHHHHhcCChhhHHHHHHhcc--------cCch----hhHHHHHHHHHhcCCHHHH
Q 010961 338 ----------------DVIVASALLDTYSKRGMPSDACKLFSELK--------VYDT----ILLNTMITVYSSCGRIEDA 389 (496)
Q Consensus 338 ----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~----~~~~~l~~~~~~~~~~~~a 389 (496)
.......++.+-.+.++.....+-...-. .... ..+.-++..+++.+.+++|
T Consensus 566 ~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeA 645 (895)
T KOG2076|consen 566 NKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEA 645 (895)
T ss_pred HHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 11112222233333332222111111110 0011 1345567788888888888
Q ss_pred HHHHhhCCCC-----Chh----hHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 390 KHIFRTMPNK-----SLI----SWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 390 ~~~~~~~~~~-----~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+.+...+..- +.. .-...+.+.+..+++..|...++.|...
T Consensus 646 l~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 646 LSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8888877652 111 1233455666778888888888887764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-13 Score=124.85 Aligned_cols=215 Identities=11% Similarity=-0.013 Sum_probs=122.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHH-------HHHHHHHHH
Q 010961 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI-------VASALLDTY 349 (496)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~ 349 (496)
..+...|+++.|...++++.+.. +-+......+...+.+.|+++++..++..+.+.+..++.. .|..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666655543 3334455555555566666666666666665554332221 122223222
Q ss_pred HhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHH
Q 010961 350 SKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 426 (496)
....+.+...++++.+. +.++.....+...+...|+.++|.+++++..+.....--.++.+....++++++++..+.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHH
Confidence 33334445555555554 345556666666666777777776666665542222222233444455777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 427 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
..+.. +-|+..+..+...|.+.|++++|.+.|+...+ ..|+...+..|..++.+.|+.++|.++++
T Consensus 320 ~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 320 QIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66652 33455566677777777777777777777665 34666666677777777777777766654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-11 Score=110.40 Aligned_cols=446 Identities=9% Similarity=-0.001 Sum_probs=354.2
Q ss_pred HHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--------CChhhHHHHHHH
Q 010961 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--------RNCFSWNAMIEG 81 (496)
Q Consensus 10 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~ 81 (496)
.|.-++.+...++.|+.++....+.- |....+|.+....=-.+|+.+...++.++-.. -+...|-.=...
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 35556677778888999988888764 44444888888888888999888888876542 255566666666
Q ss_pred HHhcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQ------KNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFARE 152 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 152 (496)
|-..|..-.+..+...... .-..||..-...|.+.+.++-|..+|....+ .+...|......--..|..++
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHH
Confidence 7777777777776665543 3356888889999999999999999998876 356788888888888899999
Q ss_pred HHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (496)
...+|++.... ++-....+....+.....|+...|..++....+.... +...+..-+..-....++++|..+|.+
T Consensus 569 l~Allqkav~~----~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 569 LEALLQKAVEQ----CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHHh----CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99999999883 4444455555567778889999999999999987665 778888889999999999999999998
Q ss_pred cCC--CChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CC-cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010961 233 MKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD--TS-SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307 (496)
Q Consensus 233 ~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 307 (496)
... ++...|..-+..---.+..++|.+++++..+ |+ ...|-.+.+.+-+.++.+.|...|..-.+. ++-....+
T Consensus 644 ar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 644 ARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred HhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 874 7788888888888889999999999998876 44 357777888888899999998888765543 34455566
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcC
Q 010961 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCG 384 (496)
Q Consensus 308 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~ 384 (496)
..+.+.=.+.|.+-.|..+++...-.+ +-+...|-..|++-.+.|+.+.|..+..+.. +.+...|..-|....+.+
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 666666678889999999999988776 5677889999999999999999999888777 556677888888887777
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
+-..+...+++-. .|+...-.+...|....++++|.+.|.+..+.+ +-+..+|.-+..-+.++|.-+.-.+++.....
T Consensus 802 rkTks~DALkkce-~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 802 RKTKSIDALKKCE-HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred cchHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 7666666666553 466666677788888889999999999999874 55678899999999999998888999988876
Q ss_pred cC
Q 010961 465 IG 466 (496)
Q Consensus 465 ~~ 466 (496)
..
T Consensus 880 ~E 881 (913)
T KOG0495|consen 880 AE 881 (913)
T ss_pred cC
Confidence 43
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-11 Score=108.30 Aligned_cols=360 Identities=13% Similarity=0.028 Sum_probs=231.5
Q ss_pred HHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHH--HHHHHHHHccch
Q 010961 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL--ATVIGACADLAA 187 (496)
Q Consensus 110 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~ 187 (496)
.-.+.+.|..+.|...|......-+..|.+-+....-..+.+.+..+.. +...|...+ ..+..++.....
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~--------~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV--------GLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh--------cCcccchHHHHHHHHHHHHHHHH
Confidence 3345567888888888887766444455544443333333333322221 122221111 123355666667
Q ss_pred HHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCC------ChHHHHHHHHHHHhcCChh-HHHHH
Q 010961 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP------DDFCLSALISGYANCGKMN-DARRV 260 (496)
Q Consensus 188 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~-~a~~~ 260 (496)
.+.+.+-.+.....|++.+...-+....+.....|+|+|+.+|+++.+. |..+|+.++-.--...+.. .|..+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 8888888888888888877666666667777889999999999999863 4456665554332222221 22222
Q ss_pred HHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHH
Q 010961 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340 (496)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 340 (496)
+. +.+=-+.|..++.+.|.-.++.++|...|++..+.+ +-....++.+.+-|...++...|.+-++.+++.+ +.|-.
T Consensus 323 ~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyR 399 (559)
T KOG1155|consen 323 SN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYR 399 (559)
T ss_pred HH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHH
Confidence 22 222225567777778888888888888888888753 3334456666667888888888888888888765 55677
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQN 414 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 414 (496)
.|-.|.++|...+.+.=|+-.|++.. +.|+..|.+|..+|.+.++.++|++.|.+... -+...+..|...|-+.
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 78888888888888888888888766 66778888888888888888888888887765 2336777888888888
Q ss_pred CChhhHHHHHHHHHh----CCC-CC-CHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 415 GSPIEALDLFCNMNK----LDL-RM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482 (496)
Q Consensus 415 g~~~~a~~~~~~m~~----~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (496)
++..+|...+++..+ .|. .| ......-|..-+.+.+++++|.......... .+...--..|++-..
T Consensus 480 ~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlReir 551 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLREIR 551 (559)
T ss_pred HhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHHHH
Confidence 888888887776554 232 22 1222233455566777777777665554332 444444444544443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-13 Score=115.94 Aligned_cols=332 Identities=13% Similarity=0.168 Sum_probs=245.2
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHH--HHccchHH-HHHHHHHHHHHcCCCcchhHH
Q 010961 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA--CADLAALE-YGKQIHSHILVNGLDFDSVLG 210 (496)
Q Consensus 134 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~--~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~ 210 (496)
+.+-|.|+. +...|....+.-+|+.|.+ .++..+...-..+++. |....++- .-.+.|-.|...|-. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~---e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRS---ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHh---cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc
Confidence 456677765 4677889999999999999 5777777666555543 22222222 222333334433332 22222
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCC----CcchHHHHHHHHHhCCCHH
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDT 286 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~ 286 (496)
+.|++. . ++-+..-....++..+|.+.++--..+.|.+++++..+. +..+||.+|.+-. +.
T Consensus 191 --------K~G~vA--d-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~ 255 (625)
T KOG4422|consen 191 --------KSGAVA--D-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YS 255 (625)
T ss_pred --------ccccHH--H-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hh
Confidence 233332 2 555555567789999999999999999999999987653 4457777775433 33
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhh----HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhh-HHHH
Q 010961 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH----GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD-ACKL 361 (496)
Q Consensus 287 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~ 361 (496)
...+++.+|....+.||..|||.++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.+++.+ |..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 337889999999999999999999999999998765 45788899999999999999999999999888865 4444
Q ss_pred HHhcc------------cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC---hhhHHHHHHHHHhCCChh
Q 010961 362 FSELK------------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--------KS---LISWNSMIVGLSQNGSPI 418 (496)
Q Consensus 362 ~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~g~~~ 418 (496)
+.++. +.|...|...+..|....+.+.|.++..-... |+ ..-|..+....+.....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 33556778888888899999999887665542 22 235667778888888899
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 419 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
.-...|+.|.-.-+-|+..+...++++....|.++-.-++|.+++..|......+..-+...+++..
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 9999999999988899999999999999999999999999999998886666655555666555544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-11 Score=104.35 Aligned_cols=440 Identities=12% Similarity=0.106 Sum_probs=328.9
Q ss_pred hccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CCh-hhHHHHHHHHHhcCCHHHHH
Q 010961 16 NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNC-FSWNAMIEGFMKLGHKEKSL 92 (496)
Q Consensus 16 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~ 92 (496)
..++++..|..+++..+..+. .+.. .|..-+.+=.+......|..++++... |.+ ..|..-+-.=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~-r~it-LWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDY-RNIT-LWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhccc-ccch-HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 347788999999999998773 2333 888889999999999999999998865 433 23444444445679999999
Q ss_pred HHHhhCCC--CChhhHHHHHHHHHhcCChhHHHHHHhhcC--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccC
Q 010961 93 QLFNVMPQ--KNDFSWNMLISGFAKAGELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168 (496)
Q Consensus 93 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 168 (496)
++|++-.+ |+...|.+.++.-.+...++.|..++++.. .|++.+|-.....--+.|+...|..+|+....... .-
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~-~d 240 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG-DD 240 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh-hH
Confidence 99998876 999999999999999999999999999865 68999999999989999999999999998877310 11
Q ss_pred CcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcc-hhHHHHHHHHHHhcCChhhHHHHH--------HhcCC---C
Q 010961 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVL--------NMMKE---P 236 (496)
Q Consensus 169 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~--------~~~~~---~ 236 (496)
.-+...+.+....-.+++.++.|.-+|+-.++.=+... ...|..+...--+-|+........ +.+.+ -
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 11223444455555677889999999998887543321 346666666666677766655543 22222 3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCc-----chHHHHH--------HHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 010961 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSS-----VMWNSMI--------SGYISNNEDTEALLLFHKMRRNGVLED 303 (496)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~l~--------~~~~~~~~~~~a~~~~~~m~~~g~~~~ 303 (496)
|-.+|-..++.-...|+.+...++|++.+...+ ..|.-.| ..=....+.+.+.++|+...+. ++..
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 556777888888889999999999999876221 1222222 1123568899999999999884 5666
Q ss_pred HHHHHHHHHHH----hcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHH
Q 010961 304 ASTLASVLSAC----SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTM 376 (496)
Q Consensus 304 ~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l 376 (496)
..||..+--.| .+..++..|.+++...+ |..|...++...|..-.+.++++....++++.. +.+..+|.-.
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 77777654443 46789999999998776 557888899999999999999999999999888 4566778878
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC-CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHh----
Q 010961 377 ITVYSSCGRIEDAKHIFRTMPN-KS----LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA---- 447 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~---- 447 (496)
...-...|+.+.|..+|+-..+ |. ...|.+.|+.-...|.++.|..+++++.+. .+...+|.++..--.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccc
Confidence 8888889999999999998775 43 346777777778899999999999999986 444556665554332
Q ss_pred -ccC-----------chhhHHHHHHHHH
Q 010961 448 -NIS-----------SLELGEQVFARVT 463 (496)
Q Consensus 448 -~~g-----------~~~~a~~~~~~~~ 463 (496)
..| ....|..+|++..
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHH
Confidence 233 5567888888664
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-12 Score=119.02 Aligned_cols=273 Identities=9% Similarity=-0.010 Sum_probs=161.9
Q ss_pred cCCHHHHHHHHhhCCC--CChhhHHHH-HHHHHhcCChhHHHHHHhhcCC--CCcccHH--HHHHHHHHcCCHHHHHHHH
Q 010961 85 LGHKEKSLQLFNVMPQ--KNDFSWNML-ISGFAKAGELKTARTLFNDMPR--RNAIAWN--SMIHCYVRNGFAREAVRLF 157 (496)
Q Consensus 85 ~~~~~~a~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~li~~~~~~~~~~~a~~~~ 157 (496)
.|+++.|.+.+....+ +++..+..+ .....+.|+++.|.+.+.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5788888877776554 223333333 3334677888888888887765 2322222 2356777788888888888
Q ss_pred HHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcch-------hHHHHHHHHHHhcCChhhHHHH
Q 010961 158 KELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS-------VLGSSLVNLYGKCGDFNSANQV 229 (496)
Q Consensus 158 ~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 229 (496)
+++.+ ..| +...+..+...+.+.|+++.+.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 177 ~~~~~-----~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 177 DKLLE-----VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHh-----cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88876 334 4456667777778888888888888888776654322 1223333333344455666666
Q ss_pred HHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 010961 230 LNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306 (496)
Q Consensus 230 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 306 (496)
++.+.+ .++.....+...+...|+.++|.+.+++..+.....--.++.+.+..++.+++++..+...+. .+-|...
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l 330 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLL 330 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh-CCCCHHH
Confidence 666653 355556666666666666666666666555432222222334444456666666666666554 1334444
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 307 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 365 (496)
+..+...|.+.+++++|...|+.+.+. .|+...+..+..++...|+.++|.+++++.
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555556666666666666666666654 355555556666666666666666666543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.2e-11 Score=103.69 Aligned_cols=428 Identities=11% Similarity=0.082 Sum_probs=305.6
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh-hHHHHHHHHHhcC
Q 010961 44 ANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDF-SWNMLISGFAKAG 117 (496)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~ 117 (496)
|..-.+.=..++++..|.++|++... .+...|-.-+..=++...+..|..++++... |-+. .|--.+..--..|
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence 33334444456777888889988876 5666777778888888889999999988776 4432 2333333444568
Q ss_pred ChhHHHHHHhhcC--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHH
Q 010961 118 ELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195 (496)
Q Consensus 118 ~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 195 (496)
++..|.++|++-. +|+..+|++.|..-.+-..++.|..+|++..- +.|+..+|....+.-.+.|....+..+|
T Consensus 156 Ni~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~-----~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL-----VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999998876 48999999999999999999999999999877 7799999998888888999999999999
Q ss_pred HHHHHc-CC-CcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC---hHHHHHHHHHHHhcCChhHHHHHH-------
Q 010961 196 SHILVN-GL-DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD---DFCLSALISGYANCGKMNDARRVF------- 261 (496)
Q Consensus 196 ~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~------- 261 (496)
+..++. |- ..+...+.+....-.++..++.|.-+|+-..+ |. ...|..+...--+-|+.....+..
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 887763 21 12334555666666667788888888766553 22 334555555444555544443332
Q ss_pred -HhcCCCCc---chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHH----HHHHH-H---hcccchhhHHHHH
Q 010961 262 -DRTTDTSS---VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS--TLA----SVLSA-C---SSLGFLEHGKQVH 327 (496)
Q Consensus 262 -~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~----~l~~~-~---~~~~~~~~a~~~~ 327 (496)
+.....|+ .+|--.+..-...|+.+...++|++.... ++|-.. .+. .-|+. | ....+.+.+.+++
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 23333443 46666677777789999999999998876 555221 111 11221 1 2467889999999
Q ss_pred HHHHHcCCCchHHHHHHH----HHHHHhcCChhhHHHHHHhcc--cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C
Q 010961 328 GHACKVGVIDDVIVASAL----LDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K 399 (496)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 399 (496)
+..++. ++....|+..+ .+.-.++.++..|.+++.... -|..-++...|..-.+.++++.+.+++++..+ |
T Consensus 390 q~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 390 QACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 998883 44455555443 344456789999999998877 57777888889988999999999999999886 3
Q ss_pred -ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHH
Q 010961 400 -SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477 (496)
Q Consensus 400 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 477 (496)
|..+|......-...|+.+.|..+|.-..+... ......|...|+--...|.+++|..+++.+.+.. +...+|-++
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisF 546 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISF 546 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhH
Confidence 567888877777888999999999998887531 2234567888888888999999999999887754 233355555
Q ss_pred HHH
Q 010961 478 VDF 480 (496)
Q Consensus 478 ~~~ 480 (496)
...
T Consensus 547 A~f 549 (677)
T KOG1915|consen 547 AKF 549 (677)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-12 Score=120.17 Aligned_cols=217 Identities=11% Similarity=-0.047 Sum_probs=123.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHH---Hh-
Q 010961 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY---SK- 351 (496)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~- 351 (496)
...+...|+++.|...++.+.+.. +-+......+...+...|+++.+.+.+..+.+.+..+.......-..++ ..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666543 3344455555556666666666666666666654332222111111111 11
Q ss_pred ---cCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhh---HHHHHHHHHhCCChhhH
Q 010961 352 ---RGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLIS---WNSMIVGLSQNGSPIEA 420 (496)
Q Consensus 352 ---~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~l~~~~~~~g~~~~a 420 (496)
....+...+.+.... +.++..+..+...+...|+.+.|.+++++..+ |+... ...........++.+.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 112223333333333 13556666666777777777777777776654 33321 11122222334666777
Q ss_pred HHHHHHHHhCCCCC-CH--HHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 421 LDLFCNMNKLDLRM-DK--FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 421 ~~~~~~m~~~~~~p-~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.+.+++..+. .| |+ ....++.+.+.+.|++++|.+.|+........|+...+.++...+.+.|+.++|.++++
T Consensus 319 ~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 319 EKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777776665 33 44 55667777788888888888888854444456777777788888888888888877765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.7e-13 Score=123.58 Aligned_cols=203 Identities=11% Similarity=0.060 Sum_probs=137.2
Q ss_pred CCcchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHH
Q 010961 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80 (496)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 80 (496)
|.|+..||.+++..|+..|+.+.|. +|..|.-...+.... +++.++.+....++.+.+. +|...+|..|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~-vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREG-VFRGLVASHKEANDAENPK-------EPLADTYTNLLK 91 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccch-hHHHHHhcccccccccCCC-------CCchhHHHHHHH
Confidence 5688999999999999999999999 888888776666666 8888888888888877665 678889999999
Q ss_pred HHHhcCCHHH---HHHHHhhCCC-------------------------CChhhHHHHHHHHHhcCChhHHHHHHhhcC--
Q 010961 81 GFMKLGHKEK---SLQLFNVMPQ-------------------------KNDFSWNMLISGFAKAGELKTARTLFNDMP-- 130 (496)
Q Consensus 81 ~~~~~~~~~~---a~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 130 (496)
+|...||... ..+.++.+.. ||. ...+......|-++.+++++..++
T Consensus 92 ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 92 AYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999988654 3332222221 111 112222233344444444443332
Q ss_pred -------------------------------C-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHH
Q 010961 131 -------------------------------R-RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178 (496)
Q Consensus 131 -------------------------------~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 178 (496)
+ +++.+|..++.+-..+|+.+.|..++.+|++ .|++.+..-|..+
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke---~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE---KGFPIRAHYFWPL 245 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH---cCCCcccccchhh
Confidence 1 4566677777777777777777777777777 5666666666666
Q ss_pred HHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC
Q 010961 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221 (496)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (496)
+-+ .++...+..++.-|...|+.|+..|+...+..+..+|
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 544 6666677777777777777777777766655555533
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-15 Score=131.91 Aligned_cols=250 Identities=17% Similarity=0.149 Sum_probs=70.2
Q ss_pred HHHHHHHhcCChhhHHHHHHh-cCC---C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCC
Q 010961 212 SLVNLYGKCGDFNSANQVLNM-MKE---P-DDFCLSALISGYANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNN 283 (496)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~-~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~ 283 (496)
.+...+.+.|++++|.++++. +.. | +...|..+.......++.+.|.+.++++...+ +..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 456667777788888777743 222 2 33334444445555566666666666555422 2234444444 4555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChhhHHHHH
Q 010961 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACKLF 362 (496)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 362 (496)
++++|.+++....+. .++...+...+..+.+.++++++..+++.+.... .+.+...+..+...+.+.|++++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666555544332 2334444455555555555666555555554322 2334445555555555555555555555
Q ss_pred HhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHH
Q 010961 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441 (496)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 441 (496)
++.... .| |....+.++..+...|+.+++.++++...+.. +.|+..+..
T Consensus 170 ~~al~~-----------------------------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~ 219 (280)
T PF13429_consen 170 RKALEL-----------------------------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDA 219 (280)
T ss_dssp HHHHHH------------------------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHH
T ss_pred HHHHHc-----------------------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHH
Confidence 544410 13 24445555555555666665555555555442 344455555
Q ss_pred HHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+..++...|++++|...++...+.. +.|+.+...+.+++...|+.++|.++.+
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred HHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 6666666666666666666555543 2255555566666666666666655543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-12 Score=120.50 Aligned_cols=285 Identities=12% Similarity=0.004 Sum_probs=165.3
Q ss_pred cCCHHHHHHHHHHHHHchhccCCcCHH-HHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhh
Q 010961 147 NGFAREAVRLFKELNSDLVERLQCDAF-ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225 (496)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (496)
.|+++.|.+.+.+..+ ..|+.. .+.....+....|+.+.+.+.+....+....+...+.......+...|+++.
T Consensus 97 ~g~~~~A~~~l~~~~~-----~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 97 EGDYAKAEKLIAKNAD-----HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred CCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 4556666655555443 233322 2222234444555555555555555443222221222223444445555555
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 010961 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305 (496)
Q Consensus 226 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 305 (496)
|...++.+.+.. ..++..+..+...+...|++++|.+.+..+.+.++.+...
T Consensus 172 Al~~l~~l~~~~----------------------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~ 223 (409)
T TIGR00540 172 ARHGVDKLLEMA----------------------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEE 223 (409)
T ss_pred HHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 555555544311 0124456666677777777777777777777775433222
Q ss_pred HHHHHHHHH---hcccchhhHHHHHHHHHHcCC---CchHHHHHHHHHHHHhcCChhhHHHHHHhccc--Cchhh---HH
Q 010961 306 TLASVLSAC---SSLGFLEHGKQVHGHACKVGV---IDDVIVASALLDTYSKRGMPSDACKLFSELKV--YDTIL---LN 374 (496)
Q Consensus 306 ~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~ 374 (496)
....-..++ ...+..+.+...+..+.+... +.++..+..+...+...|+.++|.+.+++..+ ||... ..
T Consensus 224 ~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~ 303 (409)
T TIGR00540 224 FADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPL 303 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHH
Confidence 211111111 222233333344444444322 13667777788888888888888888887772 33321 11
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--C-Ch--hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 375 TMITVYSSCGRIEDAKHIFRTMPN--K-SL--ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~--~-~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
.........++.+.+.+.++...+ | |+ ....++.+.+.+.|++++|.+.|+........|+...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 222222334667777777766654 3 34 556688999999999999999999655544589998899999999999
Q ss_pred CchhhHHHHHHHHHH
Q 010961 450 SSLELGEQVFARVTI 464 (496)
Q Consensus 450 g~~~~a~~~~~~~~~ 464 (496)
|+.++|.+++++...
T Consensus 384 g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 384 GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=128.48 Aligned_cols=252 Identities=16% Similarity=0.080 Sum_probs=82.3
Q ss_pred HHHHHccchHHHHHHHHHHHHHcC-CCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC---hHHHHHHHHHHHhcCCh
Q 010961 179 IGACADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD---DFCLSALISGYANCGKM 254 (496)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 254 (496)
...+.+.|+++.|.++++...... .+.+...+..+.......++++.|...++++...+ +..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 444445555555555553333222 12223333334444444555555555555554321 2234444444 455555
Q ss_pred hHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 010961 255 NDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331 (496)
Q Consensus 255 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 331 (496)
++|.++++...+ +++..+..++..+...++++++..+++...... .+++...|..+...+.+.|+.++|...+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555554432 345566667777788888888888888876532 34566677777777888888888888888888
Q ss_pred HcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 010961 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411 (496)
Q Consensus 332 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 411 (496)
+.. +.+..+...++..+...|+.+++.+++...... ...|+..+..+..+|
T Consensus 174 ~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~----------------------------~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 174 ELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA----------------------------APDDPDLWDALAAAY 224 (280)
T ss_dssp HH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----------------------------HTSCCHCHHHHHHH
T ss_pred HcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH----------------------------CcCHHHHHHHHHHHh
Confidence 764 335666777777777778777766666644310 012233344444445
Q ss_pred HhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 412 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
...|+.++|+.++++..+.. +.|+.....+..++...|+.++|.++.+.
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 55555555555555544431 33444555555555555555555555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.4e-13 Score=120.94 Aligned_cols=276 Identities=12% Similarity=0.053 Sum_probs=168.5
Q ss_pred hHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC------CChHHHHHHHHHHHhcCChhHHHHH
Q 010961 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE------PDDFCLSALISGYANCGKMNDARRV 260 (496)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (496)
+.++|...|..+.+ .+.-+..+...+..+|...+++++|.++|+.+.+ .+...|.+.+-.+-+.-...---+-
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 34455555555322 2222335555666666666666666666666653 3445555555443322211111111
Q ss_pred HHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH
Q 010961 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339 (496)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 339 (496)
+-......+.+|.++.++|.-+++++.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+.. ++
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~ 486 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DP 486 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----Cc
Confidence 11122233567777777777777777777777766653 34 5566666666666666677777766665542 33
Q ss_pred HHHH---HHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHH
Q 010961 340 IVAS---ALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVG 410 (496)
Q Consensus 340 ~~~~---~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 410 (496)
..|+ .+...|.+.++++.|+-.|++.. +.+.+....+...+-+.|+.|+|+.++++... .|+..--..+..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 3333 34556677777777777777666 34555666666677777777777777777653 344444445666
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCch
Q 010961 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470 (496)
Q Consensus 411 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 470 (496)
+...++.++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|..+.+...++.
T Consensus 567 l~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 77788888999999988885 233566788888888888999988888888877554443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-13 Score=121.51 Aligned_cols=272 Identities=14% Similarity=0.128 Sum_probs=156.5
Q ss_pred ChHHHHHHhhhCCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhcCChhHHHHHH
Q 010961 56 NPTDALLLFDEMPR--RNC-FSWNAMIEGFMKLGHKEKSLQLFNVMPQ------KNDFSWNMLISGFAKAGELKTARTLF 126 (496)
Q Consensus 56 ~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~ 126 (496)
+..+|+.+|..++. +|. .....+..+|...+++++|.++|+.+.+ .+..+|.+.+.-+-+.=.+.---+-+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45667777777543 232 3444566777777777777777777765 35567777666553322221111111
Q ss_pred hhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCc
Q 010961 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205 (496)
Q Consensus 127 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 205 (496)
-.+....+.+|.++..+|.-+++.+.|++.|++..+ +.| ..++|..+..-+.....+|.|...|+..+.....
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 122223456777777777777777777777777766 555 4566666666666666677777766665543211
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHhcCCC---ChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHH
Q 010961 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEP---DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGY 279 (496)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 279 (496)
+-..|-.+.-.|.+.++++.|+-.|++..+. +.+....+...+-+.|+.++|+++++++.. .|+..--..+..+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 2223344556666667777777666666652 233444445555566666666666665443 2333333344555
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcC
Q 010961 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334 (496)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 334 (496)
...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|..-|..+.+..
T Consensus 568 ~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5566666666666666653 22233445555555666666666666666555543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.2e-11 Score=105.70 Aligned_cols=432 Identities=14% Similarity=0.094 Sum_probs=276.2
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhh--CCCCChhhHHHHHHH
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE--MPRRNCFSWNAMIEG 81 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~l~~~ 81 (496)
+..-+..+++-+..+.++..|.-+-+.....+..|... | -+++++.-.|.+++|..+... +.+.|..+......+
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~-~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI--Y-WLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKC 91 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--H-HHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 45567778888888999999999888888777555553 3 478899999999998877654 445788888889999
Q ss_pred HHhcCCHHHHHHHHhhCCC---------CC--------hhh----HHH-------HHHHHHhcCChhHHHHHHhhcCCCC
Q 010961 82 FMKLGHKEKSLQLFNVMPQ---------KN--------DFS----WNM-------LISGFAKAGELKTARTLFNDMPRRN 133 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~---------~~--------~~~----~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~ 133 (496)
+.+..++++|..++..... .| ..- -+. -...|....+.++|...+.+....|
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 9999999999999983321 11 000 001 1123445567788888888777655
Q ss_pred cccHHHHH---HHHHHc-----------------CC-HHHHHHHHHH----HHHc---------hhccCCcCHHHHHHHH
Q 010961 134 AIAWNSMI---HCYVRN-----------------GF-AREAVRLFKE----LNSD---------LVERLQCDAFILATVI 179 (496)
Q Consensus 134 ~~~~~~li---~~~~~~-----------------~~-~~~a~~~~~~----~~~~---------~~~~~~p~~~~~~~ll 179 (496)
+..|..+. ....-. +. .+.-..+|+- +... ...+..-+......-.
T Consensus 172 ~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~a 251 (611)
T KOG1173|consen 172 AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKA 251 (611)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHH
Confidence 55444332 221111 11 1111111210 0000 0012223344444445
Q ss_pred HHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChhH
Q 010961 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMND 256 (496)
Q Consensus 180 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 256 (496)
.-|....++....++.+...+..+ ++...+..-|.++...|+..+-..+=.++.+ | .+.+|-++.--|...|+.++
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHH
Confidence 556677888888888888877543 3455555556677777877776666666664 3 35678888888888888888
Q ss_pred HHHHHHhcCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 257 ARRVFDRTTDTS---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS-TLASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 257 a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
|.+.|.+...-| ...|-.+..+|.-.|..++|+..|...-+. -|..+ -+--+.--|.+.++.+.|.++|.+...
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 888888766544 357888888888888888888888776553 11111 111123346778888888888888776
Q ss_pred cCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc---------C-chhhHHHHHHHHHhcCCHHHHHHHHhhCCC---C
Q 010961 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV---------Y-DTILLNTMITVYSSCGRIEDAKHIFRTMPN---K 399 (496)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~ 399 (496)
.. +.|+.+.+.+.-.....+.+.+|..+|+.... + -..+++.|..+|.+.+.+++|+..+++... .
T Consensus 409 i~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 409 IA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred cC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 53 55677777777777777888888888876541 0 122455666666666677777666666542 4
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 444 (496)
+..++.++.-.|...|+++.|.+.|.+... +.|+..+-..++.
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 556666666666666777777766666554 3565544444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-11 Score=104.14 Aligned_cols=402 Identities=10% Similarity=-0.014 Sum_probs=235.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChhHHHHHHhhcCCCCc---ccHHHHHHHHHHcC
Q 010961 75 WNAMIEGFMKLGHKEKSLQLFNVMPQ--KN-DFSWNMLISGFAKAGELKTARTLFNDMPRRNA---IAWNSMIHCYVRNG 148 (496)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~ 148 (496)
+-....-|.++|++++|++.|.+..+ || +..|.....+|...|+|+++.+.-....+-++ .++..-.+++-..|
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 44555667788899999999998876 77 67788888889999999988888877776433 24555556677778
Q ss_pred CHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHH-cC--CCcchhHHHHHHHHHHhcCChhh
Q 010961 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV-NG--LDFDSVLGSSLVNLYGKCGDFNS 225 (496)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~ 225 (496)
++++|+.=..-..-. .++.-.. + ..++.-..+ ..+..-.++-.+ .+ +-|+.....+....+... +.
T Consensus 198 ~~~eal~D~tv~ci~--~~F~n~s-~-~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~~- 266 (606)
T KOG0547|consen 198 KFDEALFDVTVLCIL--EGFQNAS-I-EPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--PK- 266 (606)
T ss_pred cHHHHHHhhhHHHHh--hhcccch-h-HHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--cc-
Confidence 877776533322221 1111111 0 011111000 111122222222 12 223333222222222110 00
Q ss_pred HHHHHHhcCCCChHHHHHHHHHH----Hh-cCChhHHHHHHHhcC-------CCC---------cchHHHHHHHHHhCCC
Q 010961 226 ANQVLNMMKEPDDFCLSALISGY----AN-CGKMNDARRVFDRTT-------DTS---------SVMWNSMISGYISNNE 284 (496)
Q Consensus 226 a~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~a~~~~~~~~-------~~~---------~~~~~~l~~~~~~~~~ 284 (496)
..+..+.......+..++ .. ...+.+|...+.+-. ..+ ..+...-..-+.-.|+
T Consensus 267 -----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 267 -----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred -----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 000000011111111111 00 012233333332211 011 1122222223445678
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364 (496)
Q Consensus 285 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 364 (496)
.-.|..-|+..+.....++. .|..+...|....+.++..+.|+...+.+ +.++.+|..-.+++.-.+++++|..-|++
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888876433322 26667777888888888888888888875 45667788888888888889999988888
Q ss_pred cccCc---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCC-----CC
Q 010961 365 LKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-----LR 433 (496)
Q Consensus 365 ~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~~ 433 (496)
....+ ...|.-+.-+..+.++++++...|++..+ | .+..|+.....+..++++++|.+.|+...+.. +.
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 87443 34555555566678888999999988876 4 45678888888888999999999998887642 11
Q ss_pred CCHHHH--HHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhhC
Q 010961 434 MDKFSL--ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496 (496)
Q Consensus 434 p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~e 496 (496)
.+..++ ..++..- =.+++..|.+++++.++...+ ....+.+|...-...|+.++|+++|++
T Consensus 500 v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred ccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 122222 2222211 237888899998888875543 345777888888889999999988863
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-11 Score=103.66 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=54.9
Q ss_pred CCHHHHHHHHhhCCCCChhhH---HHHHHHHHhcCChhHHHHHHhhcCC-CCcc------cHHHHHHHHHHcCCHHHHHH
Q 010961 86 GHKEKSLQLFNVMPQKNDFSW---NMLISGFAKAGELKTARTLFNDMPR-RNAI------AWNSMIHCYVRNGFAREAVR 155 (496)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~------~~~~li~~~~~~~~~~~a~~ 155 (496)
++.++|.++|-+|.+.|+.|| .+|.+.|.+.|.+|.|+++.+.+.+ ||.. +...|..-|...|-+|.|.+
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 456666666666665443333 3455556666666666666665554 2221 22233444555555555555
Q ss_pred HHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 156 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
+|..+... -.--......|+..|-...+|++|.++-+++.+.+
T Consensus 129 ~f~~L~de----~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 129 IFNQLVDE----GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHhcc----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 55555442 11112233444444444444444444444444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7e-12 Score=104.61 Aligned_cols=276 Identities=13% Similarity=0.121 Sum_probs=124.3
Q ss_pred CChHHHHHHhhhCCCCChhhHH---HHHHHHHhcCCHHHHHHHHhhCCC-CChh------hHHHHHHHHHhcCChhHHHH
Q 010961 55 GNPTDALLLFDEMPRRNCFSWN---AMIEGFMKLGHKEKSLQLFNVMPQ-KNDF------SWNMLISGFAKAGELKTART 124 (496)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~a~~ 124 (496)
..+++|+..|-+|.+.|+.++. +|.+.|.+.|..|+|+.+.+.+.+ ||.. ....|..-|...|-+|.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3444444444444443332222 334444444444444444444433 2211 12223333444444555555
Q ss_pred HHhhcCC-C--CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCH-HHHHHHHHHHHccchHHHHHHHHHHHHH
Q 010961 125 LFNDMPR-R--NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA-FILATVIGACADLAALEYGKQIHSHILV 200 (496)
Q Consensus 125 ~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (496)
+|..+.+ + -..+...|+..|-...+|++|++.-+++.+.+........ ..|.-+...+....+.+.|...+.+..+
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 5544443 1 1223344444455555555555554444442111111111 1233344444444455555555555544
Q ss_pred cCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCh----HHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHH
Q 010961 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD----FCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNS 274 (496)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ 274 (496)
.+.+ .+..--.+.+.....|++..|.+.++.+.+.|+ .+...|..+|...|+.++....+.++.+ +++..-..
T Consensus 209 a~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~ 287 (389)
T COG2956 209 ADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELM 287 (389)
T ss_pred hCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHH
Confidence 4322 223333444455555555555555555554332 2334444555555555555555554443 33344444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---ccchhhHHHHHHHHHHc
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS---LGFLEHGKQVHGHACKV 333 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 333 (496)
+...-....-.+.|..++.+-... +|+...+..++..-.. .|...+-...+.+|...
T Consensus 288 l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 288 LADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 444444444455555555544443 6777777777776443 23345555556666543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-10 Score=100.13 Aligned_cols=372 Identities=12% Similarity=0.063 Sum_probs=254.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcc-cHHHHHHHHHHcCC
Q 010961 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI-AWNSMIHCYVRNGF 149 (496)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~~~ 149 (496)
|...+......+.+.|....|++.|......-+..|.+-+....-..+.+.+..+....+..+.. .=-.+..++-...+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 55555555566778888999999888877644444444444333334455554444444332211 11234455666667
Q ss_pred HHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCC--cchhHHHHHHHHHHhcCChhhHH
Q 010961 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD--FDSVLGSSLVNLYGKCGDFNSAN 227 (496)
Q Consensus 150 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~ 227 (496)
.+++..-.+.... .|+..+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-.-.....+.---
T Consensus 243 ~~e~~~k~e~l~~---~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 243 HEEALQKKERLSS---VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHh---ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 8888887777777 345555555555555666788999999999999987431 15567766654433222222211
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 010961 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304 (496)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 304 (496)
...-.+.+--+.|...+.+-|.-.++.++|...|++..+-| ..+|+.+..-|....+...|++-|+...+-. +-|-
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~Dy 398 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDY 398 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhH
Confidence 22222333345677788888888999999999999888744 4578888999999999999999999988863 6678
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHH
Q 010961 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYS 381 (496)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 381 (496)
..|-.+.++|.-.+-..-|.-.|++..+.. +.|..++.+|.++|.+.++.++|++.|.... ..+...+..|.+.|-
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 888889999999999999999999988864 5688899999999999999999999998877 334578889999999
Q ss_pred hcCCHHHHHHHHhhCCC-------CChh---hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 382 SCGRIEDAKHIFRTMPN-------KSLI---SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~-------~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
+.++.++|...|++-.+ .+.. +---|..-+.+.+++++|.......... .-.
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------------------~~e 539 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------------------ETE 539 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------------------Cch
Confidence 99999999888776543 1221 2222555566777777776655444332 234
Q ss_pred hhhHHHHHHHHHHc
Q 010961 452 LELGEQVFARVTII 465 (496)
Q Consensus 452 ~~~a~~~~~~~~~~ 465 (496)
.++|..+++++.+.
T Consensus 540 ~eeak~LlReir~~ 553 (559)
T KOG1155|consen 540 CEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 57777888777653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-09 Score=95.72 Aligned_cols=412 Identities=14% Similarity=0.136 Sum_probs=246.6
Q ss_pred HHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHH
Q 010961 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKE 89 (496)
Q Consensus 10 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (496)
.-++....+++....+..|...++.-+...-.++|...++.....|-++-++.++++..+-++..-+--+.-+++.++++
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchH
Confidence 33445556677777777777766654333333377777777777777778888888877767777777788888888888
Q ss_pred HHHHHHhhCCCC----------ChhhHHHHHHHHHhcCC---hhHHHHHHhhcCC--CC--cccHHHHHHHHHHcCCHHH
Q 010961 90 KSLQLFNVMPQK----------NDFSWNMLISGFAKAGE---LKTARTLFNDMPR--RN--AIAWNSMIHCYVRNGFARE 152 (496)
Q Consensus 90 ~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~ 152 (496)
+|-+.+...... +...|.-+.+..++.-+ --...++++.+.. +| ...|++|.+.|++.|.+++
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 888888777642 23345555554444322 2223345555543 23 3478999999999999999
Q ss_pred HHHHHHHHHHchhccCCcCHHHHHHHHHHHHccch----------------------HHHHHHHHHHHHHcCCC------
Q 010961 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAA----------------------LEYGKQIHSHILVNGLD------ 204 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~~~~------ 204 (496)
|.++|++..+ ......-|..+..+|+.-.. ++....-++.+...+.-
T Consensus 267 arDvyeeai~-----~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 267 ARDVYEEAIQ-----TVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred HHHHHHHHHH-----hheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999877 23344445555555543221 22223333333332210
Q ss_pred -----cchhHHHHHHHHHHhcCChhhHHHHHHhcCC---C------ChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcc
Q 010961 205 -----FDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---P------DDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270 (496)
Q Consensus 205 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (496)
.+...+..-+ -...|+..+....+.+..+ | -...|..+...|-..|+.+.|..+|++..+.+-.
T Consensus 342 LRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 0111111111 1123455555555555432 1 1245888899999999999999999998874433
Q ss_pred -------hHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------CCC------CHHHHHHHHHHHhcccchhhHHHH
Q 010961 271 -------MWNSMISGYISNNEDTEALLLFHKMRRNG-----------VLE------DASTLASVLSACSSLGFLEHGKQV 326 (496)
Q Consensus 271 -------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-----------~~~------~~~~~~~l~~~~~~~~~~~~a~~~ 326 (496)
+|..-...=.+..+++.|+++++...... .++ +...|...+..-...|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 44444455556778888888877765321 111 122344444444566788888999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc----cCc-hhhHHHHHHHHHh---cCCHHHHHHHHhhCCC
Q 010961 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK----VYD-TILLNTMITVYSS---CGRIEDAKHIFRTMPN 398 (496)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 398 (496)
++.+.+..+.... +.-.....+-...-++++.++|++-. .|+ ..+|+..+.-+.+ ...++.|..+|++..+
T Consensus 500 YdriidLriaTPq-ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIATPQ-IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcCCHH-HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9998887654322 22223333445566788888888766 233 3466666655543 3468889999988876
Q ss_pred CC-hhhHHHHHHHHH----hCCChhhHHHHHHHHHh
Q 010961 399 KS-LISWNSMIVGLS----QNGSPIEALDLFCNMNK 429 (496)
Q Consensus 399 ~~-~~~~~~l~~~~~----~~g~~~~a~~~~~~m~~ 429 (496)
.- +..-.++--.|+ +.|-...|+.++++...
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 21 111112222232 35777777888777654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.1e-10 Score=94.88 Aligned_cols=210 Identities=16% Similarity=0.171 Sum_probs=135.2
Q ss_pred hhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhcccchhhHHHHHH
Q 010961 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA-----CSSLGFLEHGKQVHG 328 (496)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~ 328 (496)
-+.|++++-.+.+.-+.+--.++-.|.++++..+|..+.+++.. ..|-......+..+ ......+.-|.+.|.
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence 45555555544443344555566678899999999988877643 24444333333332 222334566777777
Q ss_pred HHHHcCCCchH-HHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---Ch
Q 010961 329 HACKVGVIDDV-IVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SL 401 (496)
Q Consensus 329 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 401 (496)
..-+++...|. .--.++..++.-..++++++..+..+. ..|...--.+.++++..|++.+|+++|-++..| |.
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~ 427 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK 427 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh
Confidence 66665544332 222345555556667888888888777 334444445788899999999999999988875 44
Q ss_pred hhHHH-HHHHHHhCCChhhHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCchhhHHHHHHHHHHcCCC
Q 010961 402 ISWNS-MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS-LASVISACANISSLELGEQVFARVTIIGLD 468 (496)
Q Consensus 402 ~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 468 (496)
.+|.+ |.++|.+.++++.|+.++-++.. +-+..+ ...+...|.+.+.+=-|.+.|..+....+.
T Consensus 428 ~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 428 ILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 56654 56788899999998877665543 334444 344556688888888888888888765433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-10 Score=98.18 Aligned_cols=275 Identities=15% Similarity=0.057 Sum_probs=177.5
Q ss_pred cchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCC--C--hHHHHHHHHHHHhcCChhHHHHH
Q 010961 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP--D--DFCLSALISGYANCGKMNDARRV 260 (496)
Q Consensus 185 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~a~~~ 260 (496)
.|++.+|++...+..+.+..| ...|..-..+-...|+.+.+-.++.+..++ | ....-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 567777777777766665443 233444455566677777777777777653 3 23344555666677777777766
Q ss_pred HHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhcccchhhHHHHHHHH
Q 010961 261 FDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA-------STLASVLSACSSLGFLEHGKQVHGHA 330 (496)
Q Consensus 261 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~ 330 (496)
++++.+ .++........+|.+.|++.....++..|.+.|.-.++ .++..+++-....+..+.-...|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 665443 45678888889999999999999999999988876554 34556666665666666655666655
Q ss_pred HHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc--CchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHH
Q 010961 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWN 405 (496)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 405 (496)
..+ .+.++....+++.-+.++|+.++|.++..+..+ -|+. -...-.+.+.++.+.-++..+.-.+ .++..+.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~ 332 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS 332 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence 443 344566667777778888888888887776652 2222 2222333444554444433333222 3446667
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 406 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
+|...|.+++.+.+|.+.|+...+. .|+..+|+.+..++.+.|++++|.+..++....
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7777777777777777777766654 677777777777777777777777777765543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.5e-10 Score=100.52 Aligned_cols=397 Identities=11% Similarity=0.024 Sum_probs=278.1
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhC----CC-----CC---
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM----PR-----RN--- 71 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~-----~~--- 71 (496)
||....-+.+.+...+++++|.-+...-.-.+ .+.. ........+.+...+++|..++.+- .. .+
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~--~d~~-cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~ 124 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTYKLEK--RDIA-CRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAAN 124 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh--hhHH-HHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhc
Confidence 45555666777777777777766555442222 2333 6666778888999999999998833 11 11
Q ss_pred -----hhh-----------HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh--------------------
Q 010961 72 -----CFS-----------WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK-------------------- 115 (496)
Q Consensus 72 -----~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-------------------- 115 (496)
..- +-.-...|....+.++|...|.+..-.|...|..+...-..
T Consensus 125 ~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~ 204 (611)
T KOG1173|consen 125 TLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAML 204 (611)
T ss_pred eeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhh
Confidence 100 11111235556678888888888776665554433221110
Q ss_pred c-CChhHHHHHHhhc----CC-------C---------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHH
Q 010961 116 A-GELKTARTLFNDM----PR-------R---------NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI 174 (496)
Q Consensus 116 ~-~~~~~a~~~~~~~----~~-------~---------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~ 174 (496)
. .+.+.-..+|+.. .. + +........+-+...+++.+..++++..... .++....
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----dpfh~~~ 280 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----DPFHLPC 280 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----CCCCcch
Confidence 0 1122222233211 10 1 2233344445667789999999999999884 4555566
Q ss_pred HHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC---hHHHHHHHHHHHhc
Q 010961 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD---DFCLSALISGYANC 251 (496)
Q Consensus 175 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~ 251 (496)
+..=|.++...|+......+=..+++.-+. .+.+|-++...|.-.|..++|++.|.+...-| ...|-.+...|.-.
T Consensus 281 ~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 281 LPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc
Confidence 666677888889888888888888876443 67788899988989999999999999877533 46899999999999
Q ss_pred CChhHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHH
Q 010961 252 GKMNDARRVFDRTTD--T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328 (496)
Q Consensus 252 ~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 328 (496)
|..++|+..+....+ + ....+--+.--|.+.++..-|.+.|...... .+-|+..++-+.-.....+.+.+|..+|.
T Consensus 360 ~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 999999998876554 2 2233444556788899999999999888764 35567777777766778899999999999
Q ss_pred HHHHc----C--CCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCC--
Q 010961 329 HACKV----G--VIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP-- 397 (496)
Q Consensus 329 ~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 397 (496)
..+.. + ..--..+++.|..+|.+.+.+++|+..++... +.+..++.++.-.|...|+++.|.+.|.+..
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 87732 1 11134578899999999999999999999877 6788899999999999999999999999876
Q ss_pred CCChhhHHHHHH
Q 010961 398 NKSLISWNSMIV 409 (496)
Q Consensus 398 ~~~~~~~~~l~~ 409 (496)
+|+-.+-..++.
T Consensus 519 ~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 519 KPDNIFISELLK 530 (611)
T ss_pred CCccHHHHHHHH
Confidence 466555555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-10 Score=98.20 Aligned_cols=275 Identities=12% Similarity=0.053 Sum_probs=154.7
Q ss_pred cCChhHHHHHHhhcCCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHH
Q 010961 116 AGELKTARTLFNDMPRR---NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192 (496)
Q Consensus 116 ~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 192 (496)
.|++.+|++...+-.+. ....|-.-..+--..|+.+.+-.++.+..+ ..-.++...+.+..+.....|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae---~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE---LAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhc---cCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 57888888877775542 233444444555667788888888877766 223445555666667777777888887
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC-----------hHHHHHHHHHHHhcCChhHHHHHH
Q 010961 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD-----------DFCLSALISGYANCGKMNDARRVF 261 (496)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~ 261 (496)
.-...+.+.+.. ++.+.....++|.+.|++.....++..+.+.. ..+|..+++-....+..+.-...+
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 777777776655 55566777777888888888887777776521 123444444444444444444444
Q ss_pred HhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCch
Q 010961 262 DRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338 (496)
Q Consensus 262 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 338 (496)
+..+. .++..-..++.-+.+.|+.++|.++.++..+.+..|...+ .-.+.+.++.+.-.+..++-.+.
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~----- 323 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQ----- 323 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHh-----
Confidence 43332 2333444444444555555555555555444444443111 11223333333333333332222
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCC
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGS 416 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 416 (496)
.+.++..+.+|...|.+.+.+.+|...|+...+ |+..+|+.+.+++.+.|+
T Consensus 324 ---------------------------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 324 ---------------------------HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGE 376 (400)
T ss_pred ---------------------------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Confidence 133344444555555555555555555554443 667777777777777777
Q ss_pred hhhHHHHHHHHHhC
Q 010961 417 PIEALDLFCNMNKL 430 (496)
Q Consensus 417 ~~~a~~~~~~m~~~ 430 (496)
+.+|.+..++....
T Consensus 377 ~~~A~~~r~e~L~~ 390 (400)
T COG3071 377 PEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777777765543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-10 Score=101.02 Aligned_cols=372 Identities=13% Similarity=0.057 Sum_probs=181.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhc
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR--RN-CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND---FSWNMLISGFAKA 116 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~ 116 (496)
.+....+-|.++|.+++|+++|.+.++ || +.-|.....+|...|+|+++.+--.+..+-++ ..+..-.+++-..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 445567778899999999999999886 77 77888899999999999999998888877443 3455555667777
Q ss_pred CChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHH--------HHHHHHHHHHH-chhccCCcCHHHHHHHHHHHHcc--
Q 010961 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR--------EAVRLFKELNS-DLVERLQCDAFILATVIGACADL-- 185 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~-~~~~~~~p~~~~~~~ll~~~~~~-- 185 (496)
|++++|+.-. +-.++...+-...-.- .|..-.++-.+ ++ ..+-|+.....+..+.+-..
T Consensus 197 g~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr-~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 197 GKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENR-PPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred ccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccC-CCCCCcHHHHHHHHhhcccccc
Confidence 8887775422 1112222221111111 11111111111 11 34566666555555444211
Q ss_pred ------c-----hHHHHHHHHHH------------HHHc----CCCcc-----------hhHHHHHHHHHHhcCChhhHH
Q 010961 186 ------A-----ALEYGKQIHSH------------ILVN----GLDFD-----------SVLGSSLVNLYGKCGDFNSAN 227 (496)
Q Consensus 186 ------~-----~~~~a~~~~~~------------~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~a~ 227 (496)
+ ....+.+.+.. +.+. ...++ ..+.......+.-.|+.-.+.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 0 01111111111 1000 00000 011111111222345555555
Q ss_pred HHHHhcCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 010961 228 QVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301 (496)
Q Consensus 228 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 301 (496)
.-|+.... | +...|-.+...|....+.++....|..... .++.+|..-...+.-.+++++|..=|++.+... +
T Consensus 347 ~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-p 425 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-P 425 (606)
T ss_pred hhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-h
Confidence 55555443 1 122244445555555555555555554443 234455555555555555555555555555431 2
Q ss_pred CCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cCc-------hhh
Q 010961 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VYD-------TIL 372 (496)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-------~~~ 372 (496)
.+...|..+.-+..+.+.++.++..|++..+. ++.-+.+|+.....+...++++.|.+.|+... +|+ +..
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 22333333333444555555555555555543 34445555555555555556666655555544 111 000
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhhHHHHHHHH
Q 010961 373 --LNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNM 427 (496)
Q Consensus 373 --~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m 427 (496)
--.++ .+.-.+++..|++++++..+-| ...|.+|...-.+.|+.++|+++|++-
T Consensus 505 lV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 505 LVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 00011 1112245555555555554422 234555555555555555555555543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-11 Score=114.99 Aligned_cols=265 Identities=12% Similarity=0.116 Sum_probs=137.3
Q ss_pred ccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHH
Q 010961 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245 (496)
Q Consensus 166 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 245 (496)
.|+.|+..||..+|..|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.+.+|..+.
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLL 90 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHH
Confidence 466666666666666666666666666 6666666666666666666666666666555443 45544444444
Q ss_pred HHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHH
Q 010961 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325 (496)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 325 (496)
.+|...|+... .+..++ -...+...+...|.-.....++..+.-.
T Consensus 91 ~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~--------------------------- 135 (1088)
T KOG4318|consen 91 KAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCC--------------------------- 135 (1088)
T ss_pred HHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccC---------------------------
Confidence 44444444332 111111 0111112222222222222222221111
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHH-hcCCHHHHHHHHhhCCC-CC
Q 010961 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYS-SCGRIEDAKHIFRTMPN-KS 400 (496)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~-~~ 400 (496)
.+..||.. ..+......|-++.+++++..+. ..++... .++-+. ....+++-........+ ++
T Consensus 136 -------p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~ 203 (1088)
T KOG4318|consen 136 -------PHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPT 203 (1088)
T ss_pred -------cccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCC
Confidence 11222222 12222333344444444444433 0111111 111111 12223333333333333 77
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480 (496)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (496)
+.+|..++.+-...|+.+.|..++.+|++.|++.+.+-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+-.
T Consensus 204 s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip 280 (1088)
T KOG4318|consen 204 SETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIP 280 (1088)
T ss_pred hHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHh
Confidence 777777777777778888888888888888877777777666655 66777777777777777888877777766666
Q ss_pred HHhcCChH
Q 010961 481 YCKCGFIK 488 (496)
Q Consensus 481 ~~~~g~~~ 488 (496)
+.+.|...
T Consensus 281 ~l~N~~t~ 288 (1088)
T KOG4318|consen 281 QLSNGQTK 288 (1088)
T ss_pred hhcchhhh
Confidence 55544433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-09 Score=94.71 Aligned_cols=432 Identities=11% Similarity=0.063 Sum_probs=217.6
Q ss_pred HhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHH--HHHHHH--hcCC
Q 010961 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNA--MIEGFM--KLGH 87 (496)
Q Consensus 12 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--l~~~~~--~~~~ 87 (496)
+.-....+++++|......++..+ |+...++..=+-+..+.+.+++|+.+.+.-... .+++. +=.+|+ +.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 344445566666666666666655 222224444555566666666666544432211 11111 123333 5566
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhcc
Q 010961 88 KEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167 (496)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 167 (496)
.++|+..++-..+.+..+...-...+.+.|++++|..+++.+.+.+...+...+.+-+..--.....++.+.. .
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v------~ 168 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV------P 168 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc------c
Confidence 6666666664444444455555555666666666666666666555554444443322211111111111111 1
Q ss_pred CCcCHHHHHHHH---HHHHccchHHHHHHHHHHHHHcC-------CCcch------h-HHHHHHHHHHhcCChhhHHHHH
Q 010961 168 LQCDAFILATVI---GACADLAALEYGKQIHSHILVNG-------LDFDS------V-LGSSLVNLYGKCGDFNSANQVL 230 (496)
Q Consensus 168 ~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~------~-~~~~l~~~~~~~~~~~~a~~~~ 230 (496)
..| ..+|..+. ..+...|++.+|+++++...+.+ -.-+. . .-.-+...+...|+..+|.+++
T Consensus 169 ~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 169 EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 222 22333333 23445677777777776663211 00000 0 1122334455567777777766
Q ss_pred HhcCC---CChH----HHHHHHHHHHhcCChh-HHHHHHHhcCCCC--------------cchHH-HHHHHHHhCCCHHH
Q 010961 231 NMMKE---PDDF----CLSALISGYANCGKMN-DARRVFDRTTDTS--------------SVMWN-SMISGYISNNEDTE 287 (496)
Q Consensus 231 ~~~~~---~~~~----~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--------------~~~~~-~l~~~~~~~~~~~~ 287 (496)
..+.+ +|.. .-|.++..-....-++ .++..++...... ....| .++..| .+..+.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q 325 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQ 325 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 66553 2211 1122221111111111 1112222111100 01111 111111 122222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHh--cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHH--
Q 010961 288 ALLLFHKMRRNGVLEDASTLASVLSACS--SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS-- 363 (496)
Q Consensus 288 a~~~~~~m~~~g~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-- 363 (496)
+.++-.... +..|. ..+..++..+. +......+..++...-+........+.-.+++.....|+++.|.+++.
T Consensus 326 ~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 326 VRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 222221111 12232 33444444432 222456666666666554433345566677888889999999999888
Q ss_pred ------hcc--cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC------CCh----hhHHHHHHHHHhCCChhhHHHHHH
Q 010961 364 ------ELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN------KSL----ISWNSMIVGLSQNGSPIEALDLFC 425 (496)
Q Consensus 364 ------~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~----~~~~~l~~~~~~~g~~~~a~~~~~ 425 (496)
.+. ...+.+...+...+.+.++-+.|..++.+..+ +.. ..+..+...-.+.|+.++|..+++
T Consensus 403 ~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 333 34566777788888888887777777766542 122 234444445557799999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 426 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
++.+.. ++|..+...++.+|++. |++.|..+-+.
T Consensus 483 el~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 483 ELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 999864 78888999999998874 67777766553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-07 Score=87.03 Aligned_cols=291 Identities=13% Similarity=0.130 Sum_probs=147.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHc
Q 010961 73 FSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147 (496)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 147 (496)
..|-.-++.+.++|++..-...|++... ....+|...+......|-++-+.+++++-.+-++..-+..|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4566666666777777777777766554 23445666666666677777777777777766666677777777777
Q ss_pred CCHHHHHHHHHHHHHchh---ccCCcCHHHHHHHHHHHHccchHH---HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC
Q 010961 148 GFAREAVRLFKELNSDLV---ERLQCDAFILATVIGACADLAALE---YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221 (496)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (496)
+++++|-+.+.....+.. ...+.+...|..+....++..+.- ...++++.+...-..-=...+.+|.+.|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 777777777766643210 011222333443333333332221 12223332222111111235667777777777
Q ss_pred ChhhHHHHHHhcCC--CChHHHHHHHHHHHh----------------cC------ChhHHHHHHHhcCCCC---------
Q 010961 222 DFNSANQVLNMMKE--PDDFCLSALISGYAN----------------CG------KMNDARRVFDRTTDTS--------- 268 (496)
Q Consensus 222 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~----------------~~------~~~~a~~~~~~~~~~~--------- 268 (496)
.+++|..+|++... -.+.-++.+.++|+. .+ +++-...-|+.+...-
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 77777777766543 112222222222211 01 1222233333332211
Q ss_pred ------cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC
Q 010961 269 ------SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED------ASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336 (496)
Q Consensus 269 ------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 336 (496)
+..|..-. -+..|+..+-...|.+..+. +.|. ...+..+.+.|...|+++.|..+|++..+...+
T Consensus 343 RQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 11222111 12345555556666665543 2221 123455556666677777777777766665433
Q ss_pred ch---HHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 337 DD---VIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 337 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
.- ..+|..-...-.+..+++.|+++.+...
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 21 3344444444455556666666665544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-08 Score=84.29 Aligned_cols=414 Identities=13% Similarity=0.022 Sum_probs=235.7
Q ss_pred hhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHH
Q 010961 13 QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKE 89 (496)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 89 (496)
.-+...+++..|..+++.-...+-..... +-.=+...+.+.|++++|...+..+.+ ++...+-.|.-+..-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~-~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDS-LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHH-HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 34455677888888888777655443333 444466777788999999998887764 45566667777777778888
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcC------------------------------ChhHHHHHHhhcCC--CCcccH
Q 010961 90 KSLQLFNVMPQKNDFSWNMLISGFAKAG------------------------------ELKTARTLFNDMPR--RNAIAW 137 (496)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------~~~~a~~~~~~~~~--~~~~~~ 137 (496)
+|..+-.+..+ ++..-..++..-.+.+ .+++|++++.++.. |+....
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al 187 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL 187 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence 88888776654 1111122222223333 34444555444443 222222
Q ss_pred HH-HHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHH
Q 010961 138 NS-MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 216 (496)
Q Consensus 138 ~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (496)
|. +.-+|.+..-++-+.+++.-..++ ++.+....+..+....+.=+-..+++-.+.+...+-.. | ..+.-
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q----~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~ 258 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQ----FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEY 258 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh----CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHH
Confidence 22 222334444444444444444431 22222222222222222212222222222222221110 0 01111
Q ss_pred HHhc-----CChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCC-------
Q 010961 217 YGKC-----GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE------- 284 (496)
Q Consensus 217 ~~~~-----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 284 (496)
.++. .+-+.|++++-.+.+.-+..--.++--|.+.+++.+|..+.+.+...++.-|-.-.-.++..|+
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 1111 2234455544444433334444566668899999999999988877555544333333344333
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHH
Q 010961 285 DTEALLLFHKMRRNGVLEDAS-TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363 (496)
Q Consensus 285 ~~~a~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 363 (496)
..-|.+.|+..-.++..-|.. --..+.+++.-..+++.+..++..+...=...|...+ .+.++++..|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 445666666555554333221 1233444555566788888888887776555555544 47889999999999999998
Q ss_pred hcccC---chhhHHH-HHHHHHhcCCHHHHHHHHhhCCCCCh-hh-HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHH
Q 010961 364 ELKVY---DTILLNT-MITVYSSCGRIEDAKHIFRTMPNKSL-IS-WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437 (496)
Q Consensus 364 ~~~~~---~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 437 (496)
.+..| |..+|.+ |.++|.+.++.+.|.+++-.+..|.. .+ ...+...|.+.+.+--|-+.|+.+... .|++.
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pE 495 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPE 495 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcc
Confidence 88733 4556654 56788899999999999888877643 33 344456788888888888888888875 56655
Q ss_pred HHH
Q 010961 438 SLA 440 (496)
Q Consensus 438 ~~~ 440 (496)
.|.
T Consensus 496 nWe 498 (557)
T KOG3785|consen 496 NWE 498 (557)
T ss_pred ccC
Confidence 554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-12 Score=80.20 Aligned_cols=50 Identities=26% Similarity=0.499 Sum_probs=39.1
Q ss_pred CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777888888888888888888888888888888888888888777764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-12 Score=78.69 Aligned_cols=50 Identities=30% Similarity=0.519 Sum_probs=44.9
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010961 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316 (496)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 316 (496)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999998874
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.1e-08 Score=89.11 Aligned_cols=439 Identities=13% Similarity=0.038 Sum_probs=201.6
Q ss_pred ccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHH
Q 010961 17 THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQ 93 (496)
Q Consensus 17 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 93 (496)
..+++.......+.+++..+.+.. +.....--+...|+.++|......-.+ .+.++|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 344566666666666663322222 333333334455666666666655544 234556666666666666666666
Q ss_pred HHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhcc
Q 010961 94 LFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167 (496)
Q Consensus 94 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 167 (496)
.|+.... .|...+.-+.-.-+..|+++.....-....+ .....|..+..++.-.|+...|..++++..+.- .
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~--~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ--N 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c
Confidence 6666544 3344444444444455555555555444443 233455566666666666666666666666531 1
Q ss_pred CCcCHHHHHHHHHHH------HccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CChH
Q 010961 168 LQCDAFILATVIGAC------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDF 239 (496)
Q Consensus 168 ~~p~~~~~~~ll~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~ 239 (496)
..|+...+......+ ...|.++.+.+.+..-...-+. ....-..-...+.+.+++++|..++..+.. ||..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 234444443332221 2333444444333332221100 111112233344444555555555555443 2222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 010961 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL-LLFHKMRRNGVLEDASTLASVLSACSSLG 318 (496)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 318 (496)
.|... +..++.+-.+.-+++ .+|....+.- +-....-..=+.......
T Consensus 254 ~Yy~~------------------------------l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 254 DYYEG------------------------------LEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEE 302 (700)
T ss_pred HHHHH------------------------------HHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcch
Confidence 22221 222222111111111 3333332220 000000000011111111
Q ss_pred chhhHHHHHHHHHHcCCCchHHHHHHHH-------------HHHHhcCChhhHHHHHHh--cccCchh--hHHHHHHHHH
Q 010961 319 FLEHGKQVHGHACKVGVIDDVIVASALL-------------DTYSKRGMPSDACKLFSE--LKVYDTI--LLNTMITVYS 381 (496)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------------~~~~~~~~~~~a~~~~~~--~~~~~~~--~~~~l~~~~~ 381 (496)
-.+..-.++....+.|+++-.....++- ..|...-.........+. ..+|.+. ++-.++..+-
T Consensus 303 l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred hHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 2222333444444444433211111111 111110000000000000 1133333 3445667777
Q ss_pred hcCCHHHHHHHHhhCCCCChh---hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHH
Q 010961 382 SCGRIEDAKHIFRTMPNKSLI---SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
..|+++.|+..++......+. -|..=.+.+...|++++|..++++..+.. .||...=..-..-..++.+.++|..+
T Consensus 383 ~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred HcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHH
Confidence 888888888888887764433 34444577778888888888888888765 55655444555556677888888888
Q ss_pred HHHHHHcCCCc--hH----HHHH--HHHHHHHhcCChHHHHH
Q 010961 459 FARVTIIGLDS--DQ----IIST--SLVDFYCKCGFIKMDEY 492 (496)
Q Consensus 459 ~~~~~~~~~~~--~~----~~~~--~l~~~~~~~g~~~~A~~ 492 (496)
.....+.|... +. -+|- .=.++|.+.|++.+|.+
T Consensus 462 ~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 462 LSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALK 503 (700)
T ss_pred HHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHH
Confidence 88776665410 10 1111 12345667777766654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-10 Score=96.07 Aligned_cols=190 Identities=13% Similarity=0.044 Sum_probs=104.0
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3466777778888888888888888877653 3345566666777777788888888887777654 3344556666777
Q ss_pred HHhcCChhhHHHHHHhccc-----CchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhH
Q 010961 349 YSKRGMPSDACKLFSELKV-----YDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEA 420 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a 420 (496)
+...|++++|.+.+++... .....+..+...+...|++++|...+++..+ | +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776541 1122333334444444444444444444332 1 122333444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 421 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
...+++..+. .+.+...+..+...+...|+.+.|..+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444433 122333333333444444444444444333
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.9e-10 Score=94.93 Aligned_cols=188 Identities=16% Similarity=0.041 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHH
Q 010961 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVY 380 (496)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 380 (496)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3445555556666666666666666665543 2334555556666666666666666666555 33344555566666
Q ss_pred HhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhH
Q 010961 381 SSCGRIEDAKHIFRTMPN-----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455 (496)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 455 (496)
...|++++|.+.+++..+ .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666543 122345555566666666666666666665542 22344556666666666666666
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
...+++..+. .+.+...+..+...+...|+.++|..+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666666554 2334455555566666666666666553
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-08 Score=92.15 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=36.2
Q ss_pred chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
=.++|.++++-+.+.+.. +..++..-.+.|.|.|++--|.+-+.
T Consensus 472 PLe~A~kfl~pL~~~a~~-~~et~~laFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 472 PLEEAMKFLKPLLELAPD-NIETHLLAFEVYLRKGKYLLALQALK 515 (517)
T ss_pred HHHHHHHHHHHHHHhCcc-chhhHHHHhHHHHhcCcHHHHHHHHH
Confidence 457799999988887654 77889999999999999988887664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9e-08 Score=87.09 Aligned_cols=414 Identities=12% Similarity=0.046 Sum_probs=247.0
Q ss_pred hhhHHHHHhhhhccCccchhhhhhHHHHHhcc-CCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHH
Q 010961 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83 (496)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 83 (496)
...+..-+-++.+.+.++.|..+. .+.+. .....-.|. =+-+..+.+..++|+..++...+.+..+...-.+.+-
T Consensus 46 ~~a~~cKvValIq~~ky~~ALk~i---kk~~~~~~~~~~~fE-KAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlY 121 (652)
T KOG2376|consen 46 EDAIRCKVVALIQLDKYEDALKLI---KKNGALLVINSFFFE-KAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLY 121 (652)
T ss_pred HhhHhhhHhhhhhhhHHHHHHHHH---HhcchhhhcchhhHH-HHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 345555566777788888887333 23332 111210122 2233447899999999999776667778888888999
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHH-hcCChhHHHHHHhhcCCCCcccHHHHH---HHHHHcCCHHHHHHHHHH
Q 010961 84 KLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-KAGELKTARTLFNDMPRRNAIAWNSMI---HCYVRNGFAREAVRLFKE 159 (496)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~ 159 (496)
+.|++++|.++|+.+.+.+...+..-+++-+ ..+-.-.+. +.+..+.....+|..+. ..++..|++.+|+++++.
T Consensus 122 rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k 200 (652)
T KOG2376|consen 122 RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK 200 (652)
T ss_pred HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999998755555544433211 112222222 45555554344555444 456778999999999998
Q ss_pred HHHchhc----------cCCcCHH-HHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhH----HHHHHHHHHhcCChh
Q 010961 160 LNSDLVE----------RLQCDAF-ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL----GSSLVNLYGKCGDFN 224 (496)
Q Consensus 160 ~~~~~~~----------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~ 224 (496)
..+.+.. ++.-+.. .-..+.-++...|+.++|..++...++.... |... -|.|+..-....-++
T Consensus 201 A~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d 279 (652)
T KOG2376|consen 201 ALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFD 279 (652)
T ss_pred HHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCc
Confidence 8322110 1111111 1223445667889999999999999987654 4322 233333222222122
Q ss_pred -hHHHHHHhcCCCCh-------------HHHHHHHHHHHhcCChhHHHHHHHhcCCCC-cchHHHHHHHHH--hCCCHHH
Q 010961 225 -SANQVLNMMKEPDD-------------FCLSALISGYANCGKMNDARRVFDRTTDTS-SVMWNSMISGYI--SNNEDTE 287 (496)
Q Consensus 225 -~a~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~ 287 (496)
.++..++....... ..+........-.+..+.+.++........ ...+.+++.... +...+.+
T Consensus 280 ~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~k 359 (652)
T KOG2376|consen 280 GDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKK 359 (652)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhh
Confidence 12222222221111 111122222233455566666666655533 334445544332 2235777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHH--------HHHHcCCCchHHHHHHHHHHHHhcCChhhHH
Q 010961 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG--------HACKVGVIDDVIVASALLDTYSKRGMPSDAC 359 (496)
Q Consensus 288 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 359 (496)
+..++...-+....-...+.-..+......|+++.|.+++. .+.+.+..| .+...+...+.+.++-+.|.
T Consensus 360 a~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~ 437 (652)
T KOG2376|consen 360 AIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSAS 437 (652)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHH
Confidence 88888777665222223445555666788999999999999 555554444 45567778888888877787
Q ss_pred HHHHhcc------cCchhhH----HHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHH
Q 010961 360 KLFSELK------VYDTILL----NTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCN 426 (496)
Q Consensus 360 ~~~~~~~------~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 426 (496)
.++++.. .+..... .-+...-.+.|+.++|..+++++.+ ++..+...++.+|++. +++.|..+-+.
T Consensus 438 ~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 438 AVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 7777665 2222333 3333444567999999999999986 5777888899998875 57777776554
Q ss_pred H
Q 010961 427 M 427 (496)
Q Consensus 427 m 427 (496)
+
T Consensus 517 L 517 (652)
T KOG2376|consen 517 L 517 (652)
T ss_pred C
Confidence 3
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-09 Score=106.23 Aligned_cols=206 Identities=17% Similarity=0.032 Sum_probs=105.7
Q ss_pred hhHHHHHHHhcCCC---CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHH
Q 010961 254 MNDARRVFDRTTDT---SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330 (496)
Q Consensus 254 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 330 (496)
+++|...+++..+. +..++..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44455555444431 23445555555556666666666666665542 223444555555566666666666666666
Q ss_pred HHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cC-chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Chhh
Q 010961 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VY-DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLIS 403 (496)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~ 403 (496)
.+.... +...+..++..+...|++++|...+++.. +| ++..+..+..++...|+.++|...+.++.. | +...
T Consensus 399 l~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~ 477 (553)
T PRK12370 399 LKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIA 477 (553)
T ss_pred HhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHH
Confidence 655322 11222223333444566666666666553 12 233455555666666666666666666543 2 2234
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
.+.+...|+..| +.|...++++.+. +-.|....+ +-..+.-.|+.+.+..+ +.+.+.+
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 445555666666 3666666665542 112322223 22334445666655554 6665543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-07 Score=86.76 Aligned_cols=222 Identities=13% Similarity=0.072 Sum_probs=152.8
Q ss_pred hhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHH
Q 010961 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGF 82 (496)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 82 (496)
+++....-.+.-.|+-++|.......++.++...+ .|+.+.-.+....++++|+++|..... .|...|.-+.-.-
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v--CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV--CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccCcccch--hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 33333333344567889999998888887654333 677777777777899999999998764 5677888887777
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC-----CCcccHHHHH------HHHHHcC
Q 010961 83 MKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR-----RNAIAWNSMI------HCYVRNG 148 (496)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li------~~~~~~~ 148 (496)
++.|+++.....-.+..+ .....|..++.+..-.|+...|..+++...+ ++...|.... ....+.|
T Consensus 120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g 199 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG 199 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 888999888888777766 3445677888888888999999998887653 3444444333 3456788
Q ss_pred CHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh-cCChhhHH
Q 010961 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK-CGDFNSAN 227 (496)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~ 227 (496)
.+++|++.+..-... +.-....-.+-...+.+.++.++|..++..++...+. +...|..+..++.+ .+......
T Consensus 200 ~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk 274 (700)
T KOG1156|consen 200 SLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALK 274 (700)
T ss_pred cHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999988776652 2222233344456788999999999999999987533 34444455555543 33333333
Q ss_pred HHHHhcC
Q 010961 228 QVLNMMK 234 (496)
Q Consensus 228 ~~~~~~~ 234 (496)
.+|....
T Consensus 275 ~ly~~ls 281 (700)
T KOG1156|consen 275 ALYAILS 281 (700)
T ss_pred HHHHHHh
Confidence 6665554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-08 Score=90.68 Aligned_cols=121 Identities=16% Similarity=0.067 Sum_probs=67.8
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc---CchhhHHHHHHHHHhcC
Q 010961 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV---YDTILLNTMITVYSSCG 384 (496)
Q Consensus 308 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 384 (496)
..+...|...|++++|.++++..+++. +..+..|..-...+-+.|++.+|.+.++.... .|..+-+-.+..+.+.|
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 344445556666666666666666653 22245555566666666666666666665552 23334444555566666
Q ss_pred CHHHHHHHHhhCCCCCh------------hhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 385 RIEDAKHIFRTMPNKSL------------ISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 385 ~~~~a~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
++++|.+++....+++. ....-...+|.+.|++..|++.|....+
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666666665554331 1122345666677777776665555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-09 Score=97.39 Aligned_cols=223 Identities=16% Similarity=0.131 Sum_probs=140.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-----C-CCCCHHHHH-HHHHHHhcccchhhHHHHHHHHHHc-----C--CCch
Q 010961 273 NSMISGYISNNEDTEALLLFHKMRRN-----G-VLEDASTLA-SVLSACSSLGFLEHGKQVHGHACKV-----G--VIDD 338 (496)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~m~~~-----g-~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~ 338 (496)
..+...|...|+++.|..+++...+. | ..|...+.. .+...|...+++.+|..+|+.+... | .+.-
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33555555566666665555554432 1 122222222 2444555666666666666665431 2 1112
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcc----------cCch-hhHHHHHHHHHhcCCHHHHHHHHhhCC-------CC-
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELK----------VYDT-ILLNTMITVYSSCGRIEDAKHIFRTMP-------NK- 399 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~- 399 (496)
..+++.|..+|.+.|++++|...+++.. .+.. ..++.+...+...+++++|..+++... .+
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 3345556666666777666666555443 1111 134555666667777777766666543 22
Q ss_pred C---hhhHHHHHHHHHhCCChhhHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHhccCchhhHHHHHHHHH----Hc
Q 010961 400 S---LISWNSMIVGLSQNGSPIEALDLFCNMNKL----DL--RM-DKFSLASVISACANISSLELGEQVFARVT----II 465 (496)
Q Consensus 400 ~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~ 465 (496)
+ ..+++.|...|.+.|++++|.+++++.... +. .+ ....++.+...|.+.+.++.|.++|.+.. ..
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 2 247889999999999999999999987652 11 22 24578889999999999999999998543 34
Q ss_pred CCC-c-hHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 466 GLD-S-DQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 466 ~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
|.. | ...+|..|...|.+.|++++|.++.+
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 432 2 34788899999999999999998864
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.3e-07 Score=78.60 Aligned_cols=279 Identities=10% Similarity=0.056 Sum_probs=155.2
Q ss_pred cCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhH
Q 010961 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226 (496)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (496)
.++...|...+-.+... ..++-|......+.+.+...|+.+.+...|+.....++. +........-.+.+.|+.+..
T Consensus 209 ~~~hs~a~~t~l~le~~--~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDN--TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred hcccchhhhHHHHHHhh--ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 34444444444333332 235556666667777777777777777777766544321 122222223334556666666
Q ss_pred HHHHHhcCCCC---hHHHHHHHHHHHhcCChhHHHHHHHhcCCCCc---chHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 010961 227 NQVLNMMKEPD---DFCLSALISGYANCGKMNDARRVFDRTTDTSS---VMWNSMISGYISNNEDTEALLLFHKMRRNGV 300 (496)
Q Consensus 227 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 300 (496)
..+...+...+ ...|-.-.......++++.|+.+-++.++.++ ..|-.-...+...+++++|.-.|+..+...
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 66555544322 23343344445556667777777766665433 333333456667777777777777666531
Q ss_pred CCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHH-HHHHh-cCChhhHHHHHHhcccCch---hhHHH
Q 010961 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL-DTYSK-RGMPSDACKLFSELKVYDT---ILLNT 375 (496)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~---~~~~~ 375 (496)
+-+...|..|+.+|...|.+.+|...-+...+. ++.+..+.+.+. ..+.- ...-++|.+++++....++ ...+.
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL 443 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence 345667777777777777777776665554432 122333333221 11111 1223566666666552222 23445
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 376 MITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+...+...|..+.++.++++... +|....+.|.+.+...+.+.+|++.|......
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 55566666777777777776553 66667777777777777777777777766654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.1e-09 Score=101.17 Aligned_cols=238 Identities=14% Similarity=0.037 Sum_probs=149.3
Q ss_pred chHHHHHHHHHHHHHcCCCcchhHHHHHHHHHH---------hcCChhhHHHHHHhcCC--C-ChHHHHHHHHHHHhcCC
Q 010961 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG---------KCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGK 253 (496)
Q Consensus 186 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 253 (496)
++.+.|...+++..+..+. +...+..+..++. ..+++++|...+++..+ | +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4566777777777665433 3344444444333 22346677777777664 3 35566666677777777
Q ss_pred hhHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcccchhhHHHHHHH
Q 010961 254 MNDARRVFDRTTD--T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-ASTLASVLSACSSLGFLEHGKQVHGH 329 (496)
Q Consensus 254 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 329 (496)
+++|...|++..+ | +...+..+...+...|++++|+..+++..+.. |+ ...+..++..+...|++++|...+.+
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 8888888777655 3 24467777778888888888888888887753 33 22233334445567788888888888
Q ss_pred HHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCc---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCh
Q 010961 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPN-----KSL 401 (496)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~ 401 (496)
+.+...+.++..+..+..++...|+.++|...+.++.+.+ ....+.+...|...| +.|...++.+.+ +..
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 7765433345556677777888888888888888776322 233445555566666 466666666543 222
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCC
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 431 (496)
..+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 510 ~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 510 PGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222 44455666777766665 8777764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-07 Score=86.29 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=149.8
Q ss_pred HHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHH
Q 010961 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326 (496)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 326 (496)
.+...|+++.|...|-+. ....-.+.+.....+|.+|+.+++.++... .-..-|..+...|+..|+++.|+++
T Consensus 715 hl~~~~q~daainhfiea-----~~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~l 787 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEA-----NCLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEEL 787 (1636)
T ss_pred HHHHHHhHHHHHHHHHHh-----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHH
Confidence 344556666666655432 122234456677889999999999888763 2334577788899999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccC--chhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhH
Q 010961 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY--DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404 (496)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 404 (496)
|-+. ..++--|.+|.+.|+|..|.++-.+...| ....|.+-..-+-+.|++.+|++++-.+..|+..
T Consensus 788 f~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-- 856 (1636)
T KOG3616|consen 788 FTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-- 856 (1636)
T ss_pred HHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH--
Confidence 8643 23566788999999999999999888754 4456666667788999999999999999888753
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484 (496)
Q Consensus 405 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 484 (496)
|..|-+.|..+..+++.++-... --..|...+..-+-..|+...|..-|-+..+ |.+-+++|...
T Consensus 857 ---iqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s 921 (1636)
T KOG3616|consen 857 ---IQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKAS 921 (1636)
T ss_pred ---HHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhh
Confidence 57788899988888877753321 1234566666677778888888776654422 23344555555
Q ss_pred CChHHHHHh
Q 010961 485 GFIKMDEYY 493 (496)
Q Consensus 485 g~~~~A~~~ 493 (496)
+.+++|-++
T Consensus 922 ~lw~dayri 930 (1636)
T KOG3616|consen 922 ELWEDAYRI 930 (1636)
T ss_pred hhHHHHHHH
Confidence 556655544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-09 Score=92.09 Aligned_cols=220 Identities=11% Similarity=0.031 Sum_probs=159.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccc
Q 010961 242 SALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL-ASVLSACSSLG 318 (496)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~l~~~~~~~~ 318 (496)
+.+.++|.+.|.+.+|.+.|+...+ |-+.||..+-+.|.+..++..|+.++.+-.+. .|..+|| ....+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5677888888888888888887654 56778888888888888888888888887764 4544444 44555667778
Q ss_pred chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhh
Q 010961 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRT 395 (496)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (496)
+.+.|.++++...+.. +.++.....+...|.-.++++-|+..|+++. ..++..|+.+.-+|.-.+++|-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8888888888887754 4455555566667777788888888888776 45667777777777777777777777666
Q ss_pred CCC----CCh--hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 396 MPN----KSL--ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 396 ~~~----~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
... |+. .+|-.+.......|++..|.+.|+-....+ .-+...++.|.-.-.+.|+++.|..++....+.
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 542 332 456667777777788887877777777653 334567777777777778888888777776553
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=91.57 Aligned_cols=217 Identities=13% Similarity=0.028 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCC--CChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchH-HHHHHHHHhCCCH
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMW-NSMISGYISNNED 285 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~ 285 (496)
+-+..+|.+.|.+.+|.+.|+...+ |-+.||-.+-+.|.+..+.+.|+.+|.+..+ |..+|| .-+.+.+-..++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 3445555555555555555544332 4444555555555555555555555555444 222222 2233344444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 365 (496)
++|.++|+...+.. +.+......+...|.-.++++.|..+++.+++.|+ .++..|+.+.-+|.-.++++-++..|++.
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 55555555554431 23333333344444444555555555555555552 23444444444444455555555544444
Q ss_pred c----cCc--hhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 366 K----VYD--TILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 366 ~----~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
. .|+ ...|-.+.......|++..|.+.|+-.... +..++|.|.-.-.+.|+++.|..++.....
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 3 111 223444444444455555555555544432 223445554444555555555555554444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-06 Score=83.06 Aligned_cols=180 Identities=12% Similarity=0.073 Sum_probs=86.7
Q ss_pred ccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC-CChhhHHHHHHHHHhcCCHHHHHHHH
Q 010961 17 THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-RNCFSWNAMIEGFMKLGHKEKSLQLF 95 (496)
Q Consensus 17 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 95 (496)
..|.+++|..+|.+..+.+ . |=+.|...|.+++|.++-+.-.+ .-..+|..-..-+-..++.+.|++.|
T Consensus 812 eLgMlEeA~~lYr~ckR~D-------L---lNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD-------L---LNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH-------H---HHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 3456666666666665543 2 22345556777777666554332 22345555556666667777777777
Q ss_pred hhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHH
Q 010961 96 NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175 (496)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~ 175 (496)
++...+-...+..|. .++...+.+.+++.++ ..|.-....+-..|+.+.|+.+|...+. |
T Consensus 882 EK~~~hafev~rmL~------e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~D------------~ 941 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLK------EYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAKD------------Y 941 (1416)
T ss_pred HhcCChHHHHHHHHH------hChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhhh------------h
Confidence 766543322222221 1222333333333322 2333333444445666666666655543 3
Q ss_pred HHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 176 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (496)
..+++..+-.|+.++|-++-++- | |....-.|.+.|-..|++.+|..+|-+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44444444445555444443321 1 223333444444444444444444433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-06 Score=74.74 Aligned_cols=295 Identities=11% Similarity=-0.042 Sum_probs=202.5
Q ss_pred CCcCHHHHHHHHHHHHc--cchHHHHHHHHHHHHH-cCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHH--
Q 010961 168 LQCDAFILATVIGACAD--LAALEYGKQIHSHILV-NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS-- 242 (496)
Q Consensus 168 ~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 242 (496)
+.|...+....+.+++. .++...+...+-.+.. .-++-|......+..++...|+.++|.-.|++....|+.+..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 44555555555655543 3333334444333333 335557788899999999999999999999988765444332
Q ss_pred -HHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 010961 243 -ALISGYANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318 (496)
Q Consensus 243 -~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 318 (496)
...-.+.+.|+.+....+...+...+ ...|-.-........++..|+.+-++.++.. +-+...|..-...+...|
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 23344567777777777766655432 3345445555667788999999888887653 223344444445677889
Q ss_pred chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHH-HHHH-hcCCHHHHHHHH
Q 010961 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMI-TVYS-SCGRIEDAKHIF 393 (496)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~-~~~~-~~~~~~~a~~~~ 393 (496)
+.++|.-.|+...... +.+..+|..|+.+|...|++.+|.-+-+... +.+..+...+. ..+. .-.--++|.+++
T Consensus 349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 9999999998887653 4678899999999999999999887766543 33333333331 1221 222357888888
Q ss_pred hhCCC--CCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 394 RTMPN--KSL-ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 394 ~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
++..+ |+. ...+.+...+...|..++++.++++.... .||....+.|.+.+...+.+.+|...|....+.+
T Consensus 428 ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 428 EKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 88775 443 35666777888899999999999988874 8899999999999999999999999998887654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-07 Score=88.31 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP 99 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 99 (496)
+|..|.-+....|+++.+.+.|++... .....|+.+...+...|.-..|..+++.-.
T Consensus 325 i~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 325 IFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 555555555555555555555555443 233445555555555555555555555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.7e-07 Score=86.07 Aligned_cols=247 Identities=15% Similarity=0.111 Sum_probs=173.9
Q ss_pred cCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010961 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299 (496)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 299 (496)
.+..++|.++-++..+|. .|+.+..+-.+.|.+.+|++-|-+..+ +..|.-++....+.|.+++-.+++...++..
T Consensus 1088 i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyikadD--ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIKADD--PSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred hhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHhcCC--cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 355666666666665554 788888888888888888887765544 5578888888888888888888887777766
Q ss_pred CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHH
Q 010961 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379 (496)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 379 (496)
-.|... +.|+-+|++.+++.+.++++ .-|+..-...+.+-|...|.++.|.-+|. +...|..|...
T Consensus 1164 ~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~T 1229 (1666)
T KOG0985|consen 1164 REPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLAST 1229 (1666)
T ss_pred cCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHH
Confidence 566554 35777788888777666554 24666666777777888888888877776 34567778888
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHH
Q 010961 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459 (496)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (496)
+...|++..|...-++. .+..+|...-.+|...+.+.-| +|...++-....-+..++.-|...|-+++...++
T Consensus 1230 LV~LgeyQ~AVD~aRKA--ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKA--NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHHHHHhhhc--cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 88888888887655543 4667888888888776665433 4454445556677888999999999999988888
Q ss_pred HHHHHcCCC-chHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 460 ARVTIIGLD-SDQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 460 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
+... |+. .....|+-|.-.|.|-. .++.++.+
T Consensus 1303 Ea~L--GLERAHMgmfTELaiLYskyk-p~km~EHl 1335 (1666)
T KOG0985|consen 1303 EAGL--GLERAHMGMFTELAILYSKYK-PEKMMEHL 1335 (1666)
T ss_pred Hhhh--chhHHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 7553 332 24567777777776543 44444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-08 Score=91.06 Aligned_cols=244 Identities=17% Similarity=0.128 Sum_probs=123.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchh--cc-CCcCHHHH-HHHHHHHHccchHHHHHHHHHHHHHc-----CCC-c
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLV--ER-LQCDAFIL-ATVIGACADLAALEYGKQIHSHILVN-----GLD-F 205 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~ 205 (496)
+...+...|...|++++|..+++...+... .| ..|...+. +.+...|...+++++|..+|+.+..- |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 455577888888888888888887766200 01 12222222 22444555555566555555555431 111 1
Q ss_pred -chhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CC-cchHHHHHHHHH
Q 010961 206 -DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD---TS-SVMWNSMISGYI 280 (496)
Q Consensus 206 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~~~~l~~~~~ 280 (496)
-..+++.|..+|.+.|++++|...++... +++++..- +. ...++.+...+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al------------------------~I~~~~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERAL------------------------EIYEKLLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHH------------------------HHHHHhhccChHHHHHHHHHHHHHHH
Confidence 12234444445555555555544443322 11111000 11 123455555666
Q ss_pred hCCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhcccchhhHHHHHHHHHHc----CC---CchHHHHHHHH
Q 010961 281 SNNEDTEALLLFHKMRRN---GVLED----ASTLASVLSACSSLGFLEHGKQVHGHACKV----GV---IDDVIVASALL 346 (496)
Q Consensus 281 ~~~~~~~a~~~~~~m~~~---g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~l~ 346 (496)
..+++++|..++....+. -+.++ ..+++.+...|...|++++|.++++.++.. +. .-....++.+.
T Consensus 337 ~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence 667777776666654331 01111 234555555566666666666666555432 11 11123445555
Q ss_pred HHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCh-hhHHHHHHHHHhCCChhhHHH
Q 010961 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSL-ISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~~~~l~~~~~~~g~~~~a~~ 422 (496)
..|.+.++..+|.++|.+. ..+. .... |++ .+|..|...|.+.|++++|.+
T Consensus 417 ~~~~~~k~~~~a~~l~~~~------------------------~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEA------------------------KDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHhcccchHHHHHHHH------------------------HHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 5555555555555555532 1222 1112 332 467788888888888888888
Q ss_pred HHHHHH
Q 010961 423 LFCNMN 428 (496)
Q Consensus 423 ~~~~m~ 428 (496)
+.+...
T Consensus 472 ~~~~~~ 477 (508)
T KOG1840|consen 472 LEEKVL 477 (508)
T ss_pred HHHHHH
Confidence 877654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-07 Score=89.55 Aligned_cols=456 Identities=13% Similarity=0.029 Sum_probs=260.2
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--
Q 010961 29 LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND-- 103 (496)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 103 (496)
..+....+.++-.++|..|...|+...+...|.++|+...+- +..++..+...|++..+++.|..+.-...+.+.
T Consensus 480 ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~ 559 (1238)
T KOG1127|consen 480 ALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF 559 (1238)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH
Confidence 333344455676679999999999999999999999998773 567788899999999999999998555444221
Q ss_pred ---hhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHH
Q 010961 104 ---FSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177 (496)
Q Consensus 104 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ 177 (496)
..|....-.|...++..+|...|+.... .|...|..+..+|.+.|++..|+++|.+... +.|+...-.-
T Consensus 560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-----LrP~s~y~~f 634 (1238)
T KOG1127|consen 560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL-----LRPLSKYGRF 634 (1238)
T ss_pred HHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh-----cCcHhHHHHH
Confidence 2233344456788899999999998875 3667888999999999999999999998877 6676532111
Q ss_pred -HHHHHHccchHHHHHHHHHHHHHcC------CCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC-----------CChH
Q 010961 178 -VIGACADLAALEYGKQIHSHILVNG------LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----------PDDF 239 (496)
Q Consensus 178 -ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~ 239 (496)
..-.-+..|.+.++...++...... ...-..++..+...+...|-..++..++++-.+ .+..
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 1223356788888888887765421 111112222222222233333334443333221 1222
Q ss_pred HHHHHHHHHH-----------------------hcCCh---h---HHHHHHHhcCC--CCcchHHHHHHHHHh----C--
Q 010961 240 CLSALISGYA-----------------------NCGKM---N---DARRVFDRTTD--TSSVMWNSMISGYIS----N-- 282 (496)
Q Consensus 240 ~~~~l~~~~~-----------------------~~~~~---~---~a~~~~~~~~~--~~~~~~~~l~~~~~~----~-- 282 (496)
.|-.+-.+|. ..+.. + -+.+.+-.... .++.+|..++..|.+ .
T Consensus 715 ~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 715 QWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred HHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCC
Confidence 2222221111 11111 0 01111110000 124455555544443 1
Q ss_pred --CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHH
Q 010961 283 --NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360 (496)
Q Consensus 283 --~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 360 (496)
.+...|+..++...+. ..+...+-..+......|++.-+...|-.-.... +....+|..+.-.+....+++.|..
T Consensus 795 t~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred cchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhH
Confidence 1223566666665543 3333333334444455566666665555444332 3344566666666777788888888
Q ss_pred HHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCC-----C---CChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 361 LFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP-----N---KSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 361 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
.|.... +.|...|-.........|+.-++..+|..-. + ++..-|-........+|+.++-+...+++-.
T Consensus 872 af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 872 AFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred HHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 887776 4455555555555556777777777776521 1 3444444444445556665554444443322
Q ss_pred ---------CCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc-CCCchHHHHH----HHHHHHHhcCChHHHHH
Q 010961 430 ---------LDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIIST----SLVDFYCKCGFIKMDEY 492 (496)
Q Consensus 430 ---------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~ 492 (496)
.|.+.+.+.|.......-+.+.++.|..+..+.+.. ..+.|...|+ .+...++..|.++.|..
T Consensus 952 As~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 952 ASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK 1028 (1238)
T ss_pred hHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh
Confidence 133445566777666666777777777666654321 1122333333 44555666677776654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-08 Score=80.78 Aligned_cols=183 Identities=12% Similarity=0.047 Sum_probs=94.8
Q ss_pred HHHHHHHHhcCChHHHHHHhhhCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCC
Q 010961 45 NRLLQMYMRCGNPTDALLLFDEMPRRN---CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGE 118 (496)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 118 (496)
..|.-.|...|+...|..-+++..+.| ..+|..+...|.+.|..+.|.+-|++... .+..+.|.....+|..|+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 344445555555555555555555422 23444555555555555555555555543 233445555555555555
Q ss_pred hhHHHHHHhhcCC-C----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHH
Q 010961 119 LKTARTLFNDMPR-R----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGK 192 (496)
Q Consensus 119 ~~~a~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~ 192 (496)
+++|...|++... | -..+|..+.-+..+.|+++.|.+.|++..+ ..| ...+...+.+.....|++-.|.
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~-----~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE-----LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH-----hCcCCChHHHHHHHHHHhcccchHHH
Confidence 5555555555443 2 233555555555555555555555555554 222 2234445555555555555555
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
..++.....+. ++....-..|+.-...|+.+.+.++=..+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 55555555444 45555545555555555555555444333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.7e-08 Score=78.42 Aligned_cols=192 Identities=11% Similarity=0.003 Sum_probs=136.6
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (496)
.+...+.-.|...|++..|..-+++..+.. +-+..++..+...|.+.|..+.|.+-|+...+.. +.+..+.|...-.+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 355666678888888888888888888763 4445567777777888888888888888887764 44566777777788
Q ss_pred HhcCChhhHHHHHHhcc-cC----chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHH
Q 010961 350 SKRGMPSDACKLFSELK-VY----DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEAL 421 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~ 421 (496)
|..|++++|...|++.. .| .+.+|..+..+..+.|+.+.|...|++..+ | ...+.-.+.....+.|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 88888888888888766 22 345677777777777777777777777665 2 3345666677777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
..+++....+. ++...+...|+.-.+.||.+.+-++=..+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777776653 7777777777777777777666655444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4e-06 Score=78.66 Aligned_cols=309 Identities=14% Similarity=0.164 Sum_probs=200.8
Q ss_pred HHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhC--CCCChhhHHHHHHHHHhcCC
Q 010961 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM--PRRNCFSWNAMIEGFMKLGH 87 (496)
Q Consensus 10 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 87 (496)
+.++++...|+-+.|-++ .... .+. .+.++.|.+.|.+.+|.+....- ...|......+..++.+..-
T Consensus 594 sy~q~l~dt~qd~ka~el----k~sd--gd~----laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~el 663 (1636)
T KOG3616|consen 594 SYLQALMDTGQDEKAAEL----KESD--GDG----LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGEL 663 (1636)
T ss_pred HHHHHHHhcCchhhhhhh----cccc--Ccc----HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHH
Confidence 345667777777766543 1111 122 25689999999999988765432 23566677777777777777
Q ss_pred HHHHHHHHhhCCCCChh--------hHHHH-------------------HHHHHhcCChhHHHHHHhhcCCCCcccHHHH
Q 010961 88 KEKSLQLFNVMPQKNDF--------SWNML-------------------ISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140 (496)
Q Consensus 88 ~~~a~~~~~~~~~~~~~--------~~~~l-------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 140 (496)
+++|-++|+++..++.. .|... ..-+...|+++.|...|-+.. ..-..
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~ka 738 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKA 738 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHH
Confidence 77777787777664431 00000 011122233333333332211 12233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc
Q 010961 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220 (496)
Q Consensus 141 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (496)
+.+-.....|.+|+.+++.+.. .+....-|..+..-|+..|+++.|+++|.+. ..++..+..|.+.
T Consensus 739 ieaai~akew~kai~ildniqd-----qk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~ 804 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQD-----QKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKA 804 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhh-----hccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcc
Confidence 4555667788888888887765 3334455777778888999999999888543 2356678889999
Q ss_pred CChhhHHHHHHhcCCCCh--HHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010961 221 GDFNSANQVLNMMKEPDD--FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298 (496)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 298 (496)
|+|+.|.++-++...|.. ..|-+-..-+-+.|++.+|.+++-.+..|+. .|..|-+.|..+..+++..+-..
T Consensus 805 ~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~- 878 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG- 878 (1636)
T ss_pred ccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh-
Confidence 999999999888876653 4455555667788999999999888877764 56778888998888888765432
Q ss_pred CCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364 (496)
Q Consensus 299 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 364 (496)
..-..|-..+..-+...|++..|+.-|-+..+ |.+-+++|...+.|++|.++-+.
T Consensus 879 --d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 879 --DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred --hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc
Confidence 12234555666677788888888877654432 44556667777777777666553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.2e-07 Score=83.29 Aligned_cols=387 Identities=15% Similarity=0.099 Sum_probs=219.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC-HHHHH
Q 010961 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD-AFILA 176 (496)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~-~~~~~ 176 (496)
.|...|..+.-++.+.|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-... .-.|+ ...+.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~---~~~ps~~s~~L 397 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK---SEQPSDISVLL 397 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc---ccCCCcchHHH
Confidence 4566666777777777777777777777654 23456777777777777777777777766552 11243 33344
Q ss_pred HHHHHHH-ccchHHHHHHHHHHHHHc--C--CCcchhHHHHHHHHHHhc-----------CChhhHHHHHHhcCC---CC
Q 010961 177 TVIGACA-DLAALEYGKQIHSHILVN--G--LDFDSVLGSSLVNLYGKC-----------GDFNSANQVLNMMKE---PD 237 (496)
Q Consensus 177 ~ll~~~~-~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~---~~ 237 (496)
..-+.|. +.+..+++..+-.++... + -...+..|..+.-+|... ....++...+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444444 445666666555555541 1 112233344444444321 123556666666643 22
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHhcCC----CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 010961 238 DFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLS 312 (496)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~ 312 (496)
+...-.+.--|+..++.+.|.+..++..+ .+...|..+.-.+...+++.+|+.+.+..... |. |......-++
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhh
Confidence 33333344446667777777777766554 34567777777777777777777777665442 11 0000000011
Q ss_pred HHhcccchhhHHHHHHHHHH---------------------cC-------CCchHHHHHHHHHHHHhcC---ChhhHHHH
Q 010961 313 ACSSLGFLEHGKQVHGHACK---------------------VG-------VIDDVIVASALLDTYSKRG---MPSDACKL 361 (496)
Q Consensus 313 ~~~~~~~~~~a~~~~~~~~~---------------------~~-------~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 361 (496)
.-...++.+++.....++.. .| ....+.++..+.......+ ..+..+..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 11112222222222221110 00 1111222222222221111 11111111
Q ss_pred HHhcccCch------hhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCC
Q 010961 362 FSELKVYDT------ILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432 (496)
Q Consensus 362 ~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 432 (496)
+.....|+. ..|......+.+.++.++|...+.+..+- ....|......+...|..++|.+.|......
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-- 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-- 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--
Confidence 111112221 23455666777888888888777777653 3456777777788889999999999888875
Q ss_pred CC-CHHHHHHHHHHHhccCchhhHHH--HHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 433 RM-DKFSLASVISACANISSLELGEQ--VFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 433 ~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.| ++....++...+.+.|+..-+.. ++.++.+.+. .+...|..|+..+.+.|+.++|.+.|+
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 55 45678888888999998887777 8888888663 377899999999999999999887663
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-07 Score=84.22 Aligned_cols=206 Identities=9% Similarity=-0.109 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (496)
|..+...|...|++++|...|++..+.. +.+...|..+...+...|+++.|...++...+.. +.+...+..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3334444444455555544444444432 2233444444444445555555555555444432 1123334444444444
Q ss_pred cCChhhHHHHHHhccc--CchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 010961 352 RGMPSDACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMN 428 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 428 (496)
.|++++|.+.|+.... |+..........+...++.++|...|++.... +...|. ........|+...+ +.++.+.
T Consensus 145 ~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~ 222 (296)
T PRK11189 145 GGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLMERLK 222 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHHHHH
Confidence 5555555555544441 11111111111122334455555555332211 111121 11222223444333 2333333
Q ss_pred hC---CC--CC-CHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 429 KL---DL--RM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 429 ~~---~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
+. .. .| ....|..+...+...|++++|...|++..+.++...+..-..+++..
T Consensus 223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 21 00 11 22356666666666677777777776666654332333333344433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-06 Score=70.84 Aligned_cols=187 Identities=12% Similarity=0.089 Sum_probs=106.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHH-HHH
Q 010961 106 WNMLISGFAKAGELKTARTLFNDMPRR---NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV-IGA 181 (496)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l-l~~ 181 (496)
+.+.+..+.+..++..|++++..-.++ +....+.|..+|....++..|-+.++++.. ..|...-|..- ...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-----l~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ-----LHPELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hChHHHHHHHHHHHH
Confidence 445555556666777777766655442 445566666777777777777777777765 45555444432 344
Q ss_pred HHccchHHHHHHHHHHHHHcCCCcchh--HHHHHHHHHHhcCChhhHHHHHHhcC-CCChHHHHHHHHHHHhcCChhHHH
Q 010961 182 CADLAALEYGKQIHSHILVNGLDFDSV--LGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDAR 258 (496)
Q Consensus 182 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 258 (496)
+.+.+.+..|.++...|... ++.. +...-.......+++..+..++++.. +.+..+.........+.|+++.|.
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 55666666666666666542 1111 11111112233566677777777666 344455555555556667777777
Q ss_pred HHHHhcCCC----CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 010961 259 RVFDRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301 (496)
Q Consensus 259 ~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 301 (496)
+-|+...+- ...+||..+ ++.+.|+++.|+++..++.++|++
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 777665552 234555443 344566667777777777666653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-06 Score=73.33 Aligned_cols=181 Identities=9% Similarity=0.065 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCChhHHHHHHhhcCC--CCcccHHH-HHHHHHHcC
Q 010961 75 WNAMIEGFMKLGHKEKSLQLFNVMPQK---NDFSWNMLISGFAKAGELKTARTLFNDMPR--RNAIAWNS-MIHCYVRNG 148 (496)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-li~~~~~~~ 148 (496)
+.+.+..+.+..++.+|++++..-.+. +....+.|..+|....++..|-..++++.. |...-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 444455555666666666666555442 333445555566666666666666666543 32222221 224455566
Q ss_pred CHHHHHHHHHHHHHchhccCCcCHHHHHHHH--HHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhH
Q 010961 149 FAREAVRLFKELNSDLVERLQCDAFILATVI--GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226 (496)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (496)
.+..|+++...|..+ |+...-..-+ ......+++..+..+.++.-..| +..+.+.......+.|+++.|
T Consensus 93 i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred ccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 666666666655431 2211111111 12234455555555555443222 333444444555566666666
Q ss_pred HHHHHhcCC----CChHHHHHHHHHHHhcCChhHHHHHHHhcC
Q 010961 227 NQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTT 265 (496)
Q Consensus 227 ~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (496)
.+-|+...+ .....|+.. -++.+.+++..|.++..++.
T Consensus 164 vqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEII 205 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHH
Confidence 666665554 112333332 33445566666666555444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-07 Score=81.67 Aligned_cols=57 Identities=18% Similarity=0.031 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 106 WNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
|..+...+...|+.++|...|++..+ | +...|+.+...+...|++++|.+.|++..+
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333334444444444444443332 1 223444444444444444444444444433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-05 Score=75.93 Aligned_cols=304 Identities=13% Similarity=0.154 Sum_probs=192.4
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 161 (496)
....+-+++|..+|.+.. -+......|+. ..+.++.|.++-++..+| ..|+.+..+-.+.|...+|++-|-+.
T Consensus 1058 ai~~~LyEEAF~ifkkf~-~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 334445566666665432 22233333333 335667777766666554 47888999999999999998876433
Q ss_pred HchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHH
Q 010961 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241 (496)
Q Consensus 162 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 241 (496)
-|+..|.-++..+.+.|.+++..+++....+..-.|... ..|+-+|++.+++.+..+++. -||....
T Consensus 1131 --------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i 1197 (1666)
T KOG0985|consen 1131 --------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANI 1197 (1666)
T ss_pred --------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhH
Confidence 355678899999999999999999988888777666554 478889999988877766543 4777777
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchh
Q 010961 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321 (496)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~ 321 (496)
..+.+-|...+.++.|.-+|.. +..|..+...+...|++..|...-++. .+..||..+--+|...+.+.
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhh
Confidence 7788888888888888877764 456777777777888877776554432 34556766666666655443
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCC--HHHHHHHHhh-
Q 010961 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGR--IEDAKHIFRT- 395 (496)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~- 395 (496)
.| +|...++.....-...++..|-..|-+++.+.+++... ...-..|+.|.-.|.+-.- .-+-+++|..
T Consensus 1267 lA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1267 LA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSR 1341 (1666)
T ss_pred HH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 32 23333334444455667777777777777777776654 2333445555555554321 2222233322
Q ss_pred CCCC-------ChhhHHHHHHHHHhCCChhhHH
Q 010961 396 MPNK-------SLISWNSMIVGLSQNGSPIEAL 421 (496)
Q Consensus 396 ~~~~-------~~~~~~~l~~~~~~~g~~~~a~ 421 (496)
+.-| ....|+-++..|.+-..++.|.
T Consensus 1342 vNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1342 VNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 2112 2345666666666666655543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-05 Score=76.60 Aligned_cols=416 Identities=14% Similarity=0.106 Sum_probs=236.2
Q ss_pred chhhHHHHH--hhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC-C----------
Q 010961 4 RIDYLARLL--QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-R---------- 70 (496)
Q Consensus 4 ~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~---------- 70 (496)
|+.|-..++ ..|...|+.+.|.+-.+.+... . +|..+.+++.+.++++-|.-++..|.. +
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~-vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------S-VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------H-HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 444444554 3466789999998877666553 3 899999999999999999999888864 1
Q ss_pred Ch-hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCC-CcccHHHHHHHHHHcC
Q 010961 71 NC-FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR-NAIAWNSMIHCYVRNG 148 (496)
Q Consensus 71 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~ 148 (496)
|. ..=..........|.+++|+.+|++-.+ |..|=..|-..|.+++|.++-+.-..- =..||......+-..+
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 11 2222233334577889999999988765 333455677789999998877654331 2346777777777788
Q ss_pred CHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHH
Q 010961 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228 (496)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 228 (496)
+.+.|++.|++... |--..+..|. .++...+.+.+.+. |...|.-.....-..|+.+.|+.
T Consensus 873 Di~~AleyyEK~~~-------hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGV-------HAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred cHHHHHHHHHhcCC-------hHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHH
Confidence 88888888876432 1111121111 12222223332222 33334444444445677777777
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010961 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308 (496)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 308 (496)
+|...+ -|-.+++..|-.|+.++|-++-++-. |..+.-.+.+.|-..|++.+|...|.+.+. |.
T Consensus 934 ~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fs 997 (1416)
T KOG3617|consen 934 FYSSAK-----DYFSMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FS 997 (1416)
T ss_pred HHHHhh-----hhhhheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HH
Confidence 776543 35556666666777777766665432 233444566677777777777777766542 22
Q ss_pred HHHHHHh---------------cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc-------
Q 010961 309 SVLSACS---------------SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK------- 366 (496)
Q Consensus 309 ~l~~~~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------- 366 (496)
..|+.|- ...+.-.|-.+|++ .|.. ...-+..|.+.|.+.+|+++-=+-.
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 2222221 11122222333322 1211 1123345666777766665421111
Q ss_pred -------cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHh-CCCCCC---
Q 010961 367 -------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK-LDLRMD--- 435 (496)
Q Consensus 367 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p~--- 435 (496)
..|+...+....-+....++++|..++-...+ |.-.+..| +..+..-..++-+.|.- +.-.|+
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~-----~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~ 1143 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE-----FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQE 1143 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHH
Confidence 23555566666666677777777766654332 33333333 23333333333344422 111233
Q ss_pred -HHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHH
Q 010961 436 -KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489 (496)
Q Consensus 436 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 489 (496)
...+..+...|.+.|++..|-+-|... |-+.. -++++.|.|+.++
T Consensus 1144 R~~vLeqvae~c~qQG~Yh~AtKKfTQA---GdKl~------AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1144 RKQVLEQVAELCLQQGAYHAATKKFTQA---GDKLS------AMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhhh---hhHHH------HHHHHHhcCCcce
Confidence 245777888899999998888766554 32222 3677788888764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-06 Score=78.90 Aligned_cols=196 Identities=11% Similarity=-0.006 Sum_probs=91.0
Q ss_pred Ccch-hhHHHHHhhhhccCccchhhhhhHHHHHhccCC-CchHHHHHHHHHHHhcCChHHHHHHhhhCCC--C-ChhhHH
Q 010961 2 DTRI-DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILN-STLPIANRLLQMYMRCGNPTDALLLFDEMPR--R-NCFSWN 76 (496)
Q Consensus 2 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~ 76 (496)
|||- ..+..+...+...++++.+...+....+..... +..+........+...|++++|.+.+++..+ | +...+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4532 334444444445566666555555555443222 2211222223344556677777776666543 2 222222
Q ss_pred H---HHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHc
Q 010961 77 A---MIEGFMKLGHKEKSLQLFNVMPQ--KN-DFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRN 147 (496)
Q Consensus 77 ~---l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~ 147 (496)
. ........+..+.+.+.++.... |+ ......+...+...|++++|.+.+++..+ | +...+..+..++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 82 LHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 1 11111123444444444443222 11 12223344455566666666666666553 2 344555566666666
Q ss_pred CCHHHHHHHHHHHHHchhccCCcCH--HHHHHHHHHHHccchHHHHHHHHHHHH
Q 010961 148 GFAREAVRLFKELNSDLVERLQCDA--FILATVIGACADLAALEYGKQIHSHIL 199 (496)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (496)
|++++|...+++.... ....|+. ..+..+...+...|++++|..+++...
T Consensus 162 g~~~eA~~~l~~~l~~--~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 162 GRFKEGIAFMESWRDT--WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHhhhhc--cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6666666666665542 0111221 123344455555566666666665553
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-07 Score=82.52 Aligned_cols=212 Identities=11% Similarity=0.055 Sum_probs=116.9
Q ss_pred hhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010961 13 QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL 92 (496)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 92 (496)
+.+--.|++..+..-.+ ...... ....+....+.+++...|.++.++.-...-..|.......+...+...++-+.++
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~-~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSP-ENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTC-HHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCc-hhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHH
Confidence 34444566666664444 111111 1122244567778888888777665554444555555555554444445566666
Q ss_pred HHHhhCCC-C----ChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhcc
Q 010961 93 QLFNVMPQ-K----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167 (496)
Q Consensus 93 ~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 167 (496)
.-+++... + +..........+...|++++|+++++.. .+.......+..+.+.++++.|.+.++.|.+
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~----- 159 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ----- 159 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-----
Confidence 66654432 1 2222222234456678888888777765 4555666677788888888888888888866
Q ss_pred CCcCHHHHHHHHHHH----HccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 168 LQCDAFILATVIGAC----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 168 ~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
...|.. ...+..++ ...+.+..|.-+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+
T Consensus 160 ~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 160 IDEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp CSCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred cCCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334432 22233332 2223566777777775543 345566666666666667777777766666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-07 Score=81.20 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=17.6
Q ss_pred hcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010961 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296 (496)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 296 (496)
..|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.
T Consensus 114 ~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444333 222333333344444444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.6e-06 Score=75.34 Aligned_cols=194 Identities=10% Similarity=-0.050 Sum_probs=125.8
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhh---HHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHH
Q 010961 38 NSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFS---WNAMIEGFMKLGHKEKSLQLFNVMPQ--KND-FSWNM 108 (496)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~ 108 (496)
|+-.-.+..+...+...|+.+.+...+....+ ++... .......+...|++++|.+.+++..+ |+. ..+..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 34443666677777777888887666655432 22222 22234456678999999999988765 432 23331
Q ss_pred ---HHHHHHhcCChhHHHHHHhhcCCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHH
Q 010961 109 ---LISGFAKAGELKTARTLFNDMPRRN---AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182 (496)
Q Consensus 109 ---l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 182 (496)
........+..+.+.+.+......+ ......+...+...|++++|.+.+++..+. .+.+...+..+..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~p~~~~~~~~la~i~ 158 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----NPDDAWAVHAVAHVL 158 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCcHHHHHHHHHH
Confidence 1111223456666666665533222 223445566788899999999999999882 233456677777888
Q ss_pred HccchHHHHHHHHHHHHHcCCC-cch--hHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 183 ADLAALEYGKQIHSHILVNGLD-FDS--VLGSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 183 ~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
...|+++++...++........ ++. ..+..+...+...|++++|..++++...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8999999999999888775432 222 3455677888889999999999988653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-05 Score=82.77 Aligned_cols=351 Identities=12% Similarity=-0.013 Sum_probs=207.9
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChh--hHHHHHHHHHhcCChhHHHHHHhhcCC----CCcccHHHHHHHHHHcCCHHHHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQKNDF--SWNMLISGFAKAGELKTARTLFNDMPR----RNAIAWNSMIHCYVRNGFAREAV 154 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~ 154 (496)
.+...|++.+|..........+.. ............|+++.+..++..++. .+..........+...|+++++.
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~ 429 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN 429 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence 344455555555544444332111 111222344566888888888877742 23333344455566788999998
Q ss_pred HHHHHHHHchhccC---CcCH--HHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcch----hHHHHHHHHHHhcCChhh
Q 010961 155 RLFKELNSDLVERL---QCDA--FILATVIGACADLAALEYGKQIHSHILVNGLDFDS----VLGSSLVNLYGKCGDFNS 225 (496)
Q Consensus 155 ~~~~~~~~~~~~~~---~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 225 (496)
..+........... .|.. .....+...+...|+++.+...++.....-...+. ...+.+...+...|++++
T Consensus 430 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~ 509 (903)
T PRK04841 430 TLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELAR 509 (903)
T ss_pred HHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 88887754210000 1111 11222234456788999999988887763211121 234556666777899999
Q ss_pred HHHHHHhcCC-------CC--hHHHHHHHHHHHhcCChhHHHHHHHhcCC-------CC----cchHHHHHHHHHhCCCH
Q 010961 226 ANQVLNMMKE-------PD--DFCLSALISGYANCGKMNDARRVFDRTTD-------TS----SVMWNSMISGYISNNED 285 (496)
Q Consensus 226 a~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~ 285 (496)
|...+++... +. ......+...+...|+++.|...+++... ++ ...+..+...+...|++
T Consensus 510 A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~ 589 (903)
T PRK04841 510 ALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL 589 (903)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH
Confidence 9888877652 11 22345556677888999999888776443 11 12234455566777999
Q ss_pred HHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHhcccchhhHHHHHHHHHHcC--CCchHH--H--HHHHHHHHHhcCCh
Q 010961 286 TEALLLFHKMRRN--GVLE--DASTLASVLSACSSLGFLEHGKQVHGHACKVG--VIDDVI--V--ASALLDTYSKRGMP 355 (496)
Q Consensus 286 ~~a~~~~~~m~~~--g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~l~~~~~~~~~~ 355 (496)
++|...+.+.... ...+ ....+..+.......|+.+.|...+....... ...... . ....+..+...|+.
T Consensus 590 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 590 DEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred HHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 9998888876542 1112 12334444556677889999988888775421 111110 0 01122444557888
Q ss_pred hhHHHHHHhcccCc---hh----hHHHHHHHHHhcCCHHHHHHHHhhCCCC---------ChhhHHHHHHHHHhCCChhh
Q 010961 356 SDACKLFSELKVYD---TI----LLNTMITVYSSCGRIEDAKHIFRTMPNK---------SLISWNSMIVGLSQNGSPIE 419 (496)
Q Consensus 356 ~~a~~~~~~~~~~~---~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~ 419 (496)
+.|...+.....+. .. .+..+..++...|+.++|...+++.... ...+...+..++.+.|+.++
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888877665321 11 1345666778888888888888876531 12345566777888899999
Q ss_pred HHHHHHHHHhCC
Q 010961 420 ALDLFCNMNKLD 431 (496)
Q Consensus 420 a~~~~~~m~~~~ 431 (496)
|...+.+..+..
T Consensus 750 A~~~L~~Al~la 761 (903)
T PRK04841 750 AQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHh
Confidence 998888887653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-05 Score=68.50 Aligned_cols=354 Identities=15% Similarity=0.130 Sum_probs=191.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHH---HHHHhcCCHHHHHHHHhhCCC--CChhhH-HHHHHHHHhc
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI---EGFMKLGHKEKSLQLFNVMPQ--KNDFSW-NMLISGFAKA 116 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~l~~~~~~~ 116 (496)
-...+.+.+...|.+.+|+.-|....+-|+..|.++. ..|...|+...|+.=+.+..+ ||...- ..-...+.+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 4456777888889999999999988887777777664 467788888888888887776 543221 1123457788
Q ss_pred CChhHHHHHHhhcCCCCcc------cHH------------HHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHH
Q 010961 117 GELKTARTLFNDMPRRNAI------AWN------------SMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILAT 177 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~------~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ 177 (496)
|.+++|..-|+.+.+.++. ++. ..+..+...|+...|++....+.+ +.| |...+..
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE-----i~~Wda~l~~~ 194 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE-----IQPWDASLRQA 194 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh-----cCcchhHHHHH
Confidence 9999999988888753321 111 112233344555666666555555 333 3344444
Q ss_pred HHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CChHHHHHHHHHHHhcCChh
Q 010961 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMN 255 (496)
Q Consensus 178 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 255 (496)
-..+|...|.+..|..-++...+..-. +..++-.+-..+...|+.+.++...++..+ ||...+-.. |-+. .
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~---YKkl---k 267 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF---YKKL---K 267 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH---HHHH---H
Confidence 445555555555555555544443332 223333444455555555555555555443 322111000 0000 0
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST---LASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
+..+.+ .-+......++|.++++..+...+......... +..+-.++...+++.+|.+.-.++++
T Consensus 268 Kv~K~l------------es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 268 KVVKSL------------ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHH------------HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 000000 001233455667777777776666532222222 33344455566777777777777666
Q ss_pred cCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCc---hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHH
Q 010961 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409 (496)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 409 (496)
.. +.|+.++.--..+|.-...++.|+.-|+...+.| ...-. ..+.|.++.....+.|. |.+|
T Consensus 336 ~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re----------Gle~Akrlkkqs~kRDY--YKIL-- 400 (504)
T KOG0624|consen 336 ID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE----------GLERAKRLKKQSGKRDY--YKIL-- 400 (504)
T ss_pred cC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHhccchH--HHHh--
Confidence 42 3346667667777777777777777777666222 22211 13444444444444432 2211
Q ss_pred HHHhCCChhhHHHHHHHHHhCCCCCCH
Q 010961 410 GLSQNGSPIEALDLFCNMNKLDLRMDK 436 (496)
Q Consensus 410 ~~~~~g~~~~a~~~~~~m~~~~~~p~~ 436 (496)
+--++-.-.+..+.|++|-.. ..||.
T Consensus 401 GVkRnAsKqEI~KAYRKlAqk-WHPDN 426 (504)
T KOG0624|consen 401 GVKRNASKQEITKAYRKLAQK-WHPDN 426 (504)
T ss_pred hhcccccHHHHHHHHHHHHHh-cCCcc
Confidence 222333445566677777665 35653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8e-05 Score=67.82 Aligned_cols=387 Identities=12% Similarity=0.130 Sum_probs=218.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHH
Q 010961 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177 (496)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ 177 (496)
-|..+|..|++-+... -++++.+.++++.. | ....|..-|..-.+..+++....+|.+.... ..+...|..
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-----vLnlDLW~l 91 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-----VLNLDLWKL 91 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----HhhHhHHHH
Confidence 3678888888877655 88889999988876 3 5567888888888899999999999888772 233444444
Q ss_pred HHHHHHc-cchH----HHHHHHHHHH-HHcCCCcc-hhHHHHHHHHH---------HhcCChhhHHHHHHhcCC-C--C-
Q 010961 178 VIGACAD-LAAL----EYGKQIHSHI-LVNGLDFD-SVLGSSLVNLY---------GKCGDFNSANQVLNMMKE-P--D- 237 (496)
Q Consensus 178 ll~~~~~-~~~~----~~a~~~~~~~-~~~~~~~~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~-~--~- 237 (496)
-+..-.+ .++. +...+.|+-. .+.|..+- ...|+..+..+ ....+++.+.+++.++.. | +
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 4433221 1222 2333444433 34454332 23444444432 223345666777777664 2 1
Q ss_pred hHHHHHHHHH-----------H--HhcCChhHHHHHHHhcCC------CCc---------------chHHHHHHHHHhCC
Q 010961 238 DFCLSALISG-----------Y--ANCGKMNDARRVFDRTTD------TSS---------------VMWNSMISGYISNN 283 (496)
Q Consensus 238 ~~~~~~l~~~-----------~--~~~~~~~~a~~~~~~~~~------~~~---------------~~~~~l~~~~~~~~ 283 (496)
...|+-...- + -+...+-.|.+++++... .+. ..|..+|.-=-..+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 1223222111 0 022234445544443321 110 11333332211111
Q ss_pred CH--------HHHHHHHHH-HHHCCCCCCHHHH-HHHH----HHHhcccc-------hhhHHHHHHHHHHcCCCchHHHH
Q 010961 284 ED--------TEALLLFHK-MRRNGVLEDASTL-ASVL----SACSSLGF-------LEHGKQVHGHACKVGVIDDVIVA 342 (496)
Q Consensus 284 ~~--------~~a~~~~~~-m~~~g~~~~~~~~-~~l~----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 342 (496)
-- ....-.++. |.--+..|+.... ...+ +.+...|+ .+++..+++...+.-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011111211 1222333332211 1111 11222333 34455555554443333344444
Q ss_pred HHHHHHHHhcC---ChhhHHHHHHhcc----cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC----C-ChhhHHHHHHH
Q 010961 343 SALLDTYSKRG---MPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----K-SLISWNSMIVG 410 (496)
Q Consensus 343 ~~l~~~~~~~~---~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~l~~~ 410 (496)
..+.+.--..- ..+.....++++. ..-..+|..+++.-.+...++.|..+|.+..+ + ++.++++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 44433221111 2445555565555 22344688888888899999999999999876 2 56677788877
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCch--HHHHHHHHHHHHhcCChH
Q 010961 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD--QIISTSLVDFYCKCGFIK 488 (496)
Q Consensus 411 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 488 (496)
||. ++.+-|.++|+--.++ +.-++.-....++-+.+.++-..+..+|++....++.|| ..+|..+++.=..-|+++
T Consensus 412 ~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 765 6788899999986554 234455566777778888999999999999988877665 489999999888899998
Q ss_pred HHHHhhh
Q 010961 489 MDEYYLM 495 (496)
Q Consensus 489 ~A~~~~~ 495 (496)
.+.++-+
T Consensus 490 si~~lek 496 (656)
T KOG1914|consen 490 SILKLEK 496 (656)
T ss_pred HHHHHHH
Confidence 8877643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-05 Score=82.90 Aligned_cols=283 Identities=13% Similarity=0.067 Sum_probs=141.8
Q ss_pred HHHHHHhcCChhhHHHHHHhcCC----C----C--h--HHHHHHHHHHHhcCChhHHHHHHHhcCC--C--C----cchH
Q 010961 213 LVNLYGKCGDFNSANQVLNMMKE----P----D--D--FCLSALISGYANCGKMNDARRVFDRTTD--T--S----SVMW 272 (496)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~~~~----~----~--~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--~----~~~~ 272 (496)
....+...|+++++...+....+ . + . .....+...+...|+++.|...+++..+ + + ....
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 33444556677776666654421 1 0 0 1111222334566777777777665432 1 1 1233
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhcccchhhHHHHHHHHHHc----CCC--c-hHH
Q 010961 273 NSMISGYISNNEDTEALLLFHKMRRN----GV-LEDASTLASVLSACSSLGFLEHGKQVHGHACKV----GVI--D-DVI 340 (496)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~ 340 (496)
+.+...+...|++++|...+.+.... |. .+....+..+...+...|+++.|...+.+.... +.. + ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 44455566677777777776665432 11 011123334444556677777777766665432 211 1 122
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhccc------C--chhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CC-hhhH---
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELKV------Y--DTILLNTMITVYSSCGRIEDAKHIFRTMPN----KS-LISW--- 404 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~--- 404 (496)
.+..+...+...|++++|...+.+... + ....+..+...+...|+.+.|...++.... .. ...+
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 333444555566777777766665531 1 112233344556667777777666655431 11 0111
Q ss_pred --HHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCchhhHHHHHHHHHHc----CCCch-HHHH
Q 010961 405 --NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK---FSLASVISACANISSLELGEQVFARVTII----GLDSD-QIIS 474 (496)
Q Consensus 405 --~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~ 474 (496)
...+..+...|+.+.|...+............ ..+..+..++...|++++|...++..... |..++ ..+.
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 01123334466777777666554432111111 11334555666677777777777755432 32222 2445
Q ss_pred HHHHHHHHhcCChHHHHHhhh
Q 010961 475 TSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~ 495 (496)
..+..++.+.|+.++|.+.+.
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 556666777777777766654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-05 Score=70.22 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=74.2
Q ss_pred hhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CC-hhhHHHHHHHHHhcCCHHH
Q 010961 14 SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RN-CFSWNAMIEGFMKLGHKEK 90 (496)
Q Consensus 14 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~ 90 (496)
+....|+++.|..+|...+...+. +.. .|..-..+|.+.|++++|++=-.+..+ |+ ...|.....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~-nhv-lySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT-NHV-LYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC-ccc-hhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 445688999999999999988755 333 788888899999999998876655554 44 3578889999999999999
Q ss_pred HHHHHhhCCC--C-ChhhHHHHHHHH
Q 010961 91 SLQLFNVMPQ--K-NDFSWNMLISGF 113 (496)
Q Consensus 91 a~~~~~~~~~--~-~~~~~~~l~~~~ 113 (496)
|+.-|.+..+ | |...++-+..++
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999998877 3 334455555554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7e-05 Score=64.20 Aligned_cols=188 Identities=13% Similarity=0.007 Sum_probs=79.3
Q ss_pred HHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CChHH-HHHHHHHHHhcC
Q 010961 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFC-LSALISGYANCG 252 (496)
Q Consensus 176 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~l~~~~~~~~ 252 (496)
.-+-+.+...|++..|+.-|...++.++. +-.++-.-...|...|+..-|+.-+..+.+ ||-.. --.-...+.+.|
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 33444444455555555555544432211 111222223344445555555554544443 33111 111123345555
Q ss_pred ChhHHHHHHHhcCCCCc------------------chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010961 253 KMNDARRVFDRTTDTSS------------------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314 (496)
Q Consensus 253 ~~~~a~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 314 (496)
.++.|..-|+.+.+.++ ......+..+...|+...|+.....+.+. .+.|...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHH
Confidence 55555555555544221 01111223333445555555555555543 133444444444455
Q ss_pred hcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
...|.+..|+.=++...+.. ..+...+-.+-..+...|+.+.++...++..
T Consensus 200 i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55555555554444443332 1222233333444444555555554444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-05 Score=66.47 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=48.4
Q ss_pred HHhcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhh
Q 010961 380 YSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454 (496)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 454 (496)
+.+..+++.|.+.+++|.+ .+..+.+.|..++.+ .+...+|.-+|++|.++ .+|++.+.+....++...|++++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 3344445555555555544 223344434433332 23345555555555543 35555555555555555555555
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 455 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
|..+++........ ++.+...++-+-...|.
T Consensus 226 Ae~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 226 AESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 55555555443322 33343334433334443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00014 Score=66.33 Aligned_cols=89 Identities=10% Similarity=-0.050 Sum_probs=60.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchh
Q 010961 377 ITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 453 (496)
.+.+.+.|++..|...|.++.+ | |...|....-+|.+.|.+..|++-.+...+.. ++....|..=..++....+++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888877765 3 45677777778888888888777777666652 333444555555556666777
Q ss_pred hHHHHHHHHHHcC
Q 010961 454 LGEQVFARVTIIG 466 (496)
Q Consensus 454 ~a~~~~~~~~~~~ 466 (496)
+|.+.|++..+..
T Consensus 444 kAleay~eale~d 456 (539)
T KOG0548|consen 444 KALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777776643
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.8e-05 Score=73.19 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=70.7
Q ss_pred hhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHH----------------------
Q 010961 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL---------------------- 63 (496)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---------------------- 63 (496)
..|..|..-|+..-+..+|...|+...+.+ ++.......+..-|++..+++.|..+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 345555566666556666666666666654 33333555666666666666666554
Q ss_pred --------------hhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh-hHHH--HHHHHHhcCChhHHH
Q 010961 64 --------------FDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-SWNM--LISGFAKAGELKTAR 123 (496)
Q Consensus 64 --------------~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~--l~~~~~~~~~~~~a~ 123 (496)
|+...+ .|...|..+.++|.+.|++..|+++|.+...-++. +|.. .....+..|.+.+|.
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 322222 24556777777788888888888887766552222 1211 222344556666666
Q ss_pred HHHhhcC
Q 010961 124 TLFNDMP 130 (496)
Q Consensus 124 ~~~~~~~ 130 (496)
..+..+.
T Consensus 651 d~l~~ii 657 (1238)
T KOG1127|consen 651 DALGLII 657 (1238)
T ss_pred HHHHHHH
Confidence 6665554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.2e-08 Score=54.34 Aligned_cols=32 Identities=9% Similarity=0.209 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHHhccCchhhHHHHHHHH
Q 010961 431 DLRMDKFSLASVISACANISSLELGEQVFARV 462 (496)
Q Consensus 431 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (496)
|++||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-05 Score=79.28 Aligned_cols=220 Identities=14% Similarity=0.107 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCC-C-------cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010961 240 CLSALISGYANCGKMNDARRVFDRTTDT-S-------SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311 (496)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 311 (496)
.|-..+..+...++.++|.++++++... | ...|.++++.-..-|.-+...++|++..+. --....|..|.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHH
Confidence 3444455555555555555555544321 0 124444444444445555555555555543 11123455555
Q ss_pred HHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---c--CchhhHHHHHHHHHhcCCH
Q 010961 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---V--YDTILLNTMITVYSSCGRI 386 (496)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~ 386 (496)
..|.+.+..++|.++++.|.+. +.....+|...++.+.+.++-++|..++.+.. + .......-.+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 5555566666666666655553 12445555556666666655555655555544 1 1222333344444556666
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCchhhHHHHHHH
Q 010961 387 EDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK--FSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 387 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
+.+..+|+.... +....|+.+++.-.++|+.+.+..+|++....+++|-. +.|.-.+..--..|+-+.+..+=.+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 666666666554 24567888888888899999999999999888887743 4566666555555665544444334
Q ss_pred H
Q 010961 462 V 462 (496)
Q Consensus 462 ~ 462 (496)
+
T Consensus 1697 A 1697 (1710)
T KOG1070|consen 1697 A 1697 (1710)
T ss_pred H
Confidence 3
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.1e-08 Score=53.41 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=22.2
Q ss_pred CCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 010961 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
|+.||..+|+.|+.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566666666666666666666666666666653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-05 Score=75.79 Aligned_cols=225 Identities=12% Similarity=0.038 Sum_probs=173.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchh
Q 010961 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321 (496)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~ 321 (496)
..+...+...|-...|..+|++ ...|..++.+|+..|+..+|..+..+-.+ -+||...|..+.+......-++
T Consensus 402 ~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHH
Confidence 4566778889999999999998 56788899999999999999999888777 3889999988888877777788
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010961 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398 (496)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 398 (496)
+|.++.+..... .-..+.....+.++++++.+.|+.-. +....+|-.+..+..+.++++.|.+.|..-..
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 888887764432 11222233344788999999988655 44566888888888999999999999988764
Q ss_pred --C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC-CCchHHHH
Q 010961 399 --K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIIS 474 (496)
Q Consensus 399 --~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ 474 (496)
| +...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+-...+.|.++.|.+.+..+.+.. ...|..+.
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhh
Confidence 5 45689999999999999999999999999887 4456678888888889999999999998775421 11144444
Q ss_pred HHHHHHH
Q 010961 475 TSLVDFY 481 (496)
Q Consensus 475 ~~l~~~~ 481 (496)
..++...
T Consensus 627 ~~iv~~~ 633 (777)
T KOG1128|consen 627 LIIVRTV 633 (777)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-05 Score=66.53 Aligned_cols=151 Identities=14% Similarity=0.062 Sum_probs=88.5
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcC
Q 010961 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCG 384 (496)
Q Consensus 308 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~ 384 (496)
..+-..+...|+-+....+....... .+.+.......+....+.|++.+|...+.+.. ++|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44455555666666666555553332 23344455556666666777777776666655 455556666666666666
Q ss_pred CHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHH
Q 010961 385 RIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460 (496)
Q Consensus 385 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (496)
+++.|..-|.+..+ .+....+.+...|.-.|+.+.|..++.+....+ .-|...-..+..+....|+++.|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 66666666665543 344556666666666666666666666666542 2245555555556666666666665543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.3e-05 Score=62.22 Aligned_cols=168 Identities=11% Similarity=0.108 Sum_probs=98.7
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC-cchH
Q 010961 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS-SVMW 272 (496)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 272 (496)
+.+++......-+......-...|+..|++++|++.+... .+......-+..+.+..+.+-|...+++|.+-| ..+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tL 172 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATL 172 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 3333333333323233333444566677777777776662 233333344455566666677777777766633 3455
Q ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 273 NSMISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 273 ~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
+.|..++.+ .+...+|.-+|++|-++ .+|+..+.+....++...|++++|..+++....... .++.+...++.+
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~ 250 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVL 250 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHH
Confidence 545555443 35577888888888765 577888888888888888888888888888877653 344555555555
Q ss_pred HHhcCChhhH-HHHHHhc
Q 010961 349 YSKRGMPSDA-CKLFSEL 365 (496)
Q Consensus 349 ~~~~~~~~~a-~~~~~~~ 365 (496)
-...|...++ .+.+.++
T Consensus 251 a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 251 ALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHhCCChHHHHHHHHHH
Confidence 5555554443 3333433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=9e-06 Score=74.39 Aligned_cols=240 Identities=11% Similarity=0.127 Sum_probs=147.1
Q ss_pred HHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHH
Q 010961 248 YANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324 (496)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 324 (496)
+.+.|++.+|.-.|+...+.| ..+|.-|.......++-..|+..+++..+.. +-+......|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 456666777777776655533 3466666666666776667777776666642 334455556666666777666676
Q ss_pred HHHHHHHHcCCCc--------hHHHHHHHHHHHHhcCChhhHHHHHHhcc-----cCchhhHHHHHHHHHhcCCHHHHHH
Q 010961 325 QVHGHACKVGVID--------DVIVASALLDTYSKRGMPSDACKLFSELK-----VYDTILLNTMITVYSSCGRIEDAKH 391 (496)
Q Consensus 325 ~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (496)
..++.-+...++- +...-.. ..+.....+....++|-++. .+|+.+...|.-.|.-.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 6666654432110 0000000 00000111222333333333 3677777888888888888888888
Q ss_pred HHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCchhhHHHHHHHHHH---
Q 010961 392 IFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK-FSLASVISACANISSLELGEQVFARVTI--- 464 (496)
Q Consensus 392 ~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 464 (496)
.|+.... | |...||.|...++...+.++|+..|.+..+. +|+. .....|.-+|...|.+++|...|-..+.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 8887764 4 5578888888888888888888888888875 7764 3555566678888888888877764432
Q ss_pred c------CCCchHHHHHHHHHHHHhcCChHHHHH
Q 010961 465 I------GLDSDQIISTSLVDFYCKCGFIKMDEY 492 (496)
Q Consensus 465 ~------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 492 (496)
. +..++..+|.+|=.++.-.++.+-+.+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 2 112234677777777777776664443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.8e-05 Score=76.23 Aligned_cols=219 Identities=15% Similarity=0.123 Sum_probs=174.7
Q ss_pred CC-cchHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHH
Q 010961 267 TS-SVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLED---ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341 (496)
Q Consensus 267 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 341 (496)
|| ...|-..|..+...++.++|.++.++.... ++.-. ...|.++++.-..-|.-+...++|+++.+.. ..-.+
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 44 568888999999999999999999998865 22222 2346666666666678888999999998853 34557
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C---ChhhHHHHHHHHHh
Q 010961 342 ASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K---SLISWNSMIVGLSQ 413 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~ 413 (496)
|..|...|.+.+..++|-++++.|. ......|...+..+.+.++-+.|..++.+..+ | ........+..-.+
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 8899999999999999999999998 44677899999999999999999999998775 3 34455566677778
Q ss_pred CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchH--HHHHHHHHHHHhcCChH
Q 010961 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ--IISTSLVDFYCKCGFIK 488 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 488 (496)
.|+.+.+..+|+..... .|--...|+.+++.-.++|+.+.+..+|++.+..++.|-. ..|.-.++.=-..|+-+
T Consensus 1613 ~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred cCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 99999999999998876 3556779999999999999999999999999999887754 45555555444456543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3e-05 Score=64.09 Aligned_cols=151 Identities=16% Similarity=0.091 Sum_probs=113.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC
Q 010961 343 SALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGS 416 (496)
Q Consensus 343 ~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 416 (496)
..+-..+...|+-+....+..... +.|.......+......|++..|...|++... +|...|+.+.-+|.+.|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 555566667777777777776644 34555666678888888888888888888775 466788888888888888
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 417 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.+.|..-|.+..+.. +-++..++.+.-.+.-.|+++.|..++......+.. |..+-..|..+....|++++|.++..
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 888888888887752 335667777877888888888888888877765432 66677777888888888888887754
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.9e-06 Score=76.16 Aligned_cols=213 Identities=12% Similarity=0.009 Sum_probs=169.3
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHHh
Q 010961 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYIS 281 (496)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 281 (496)
+|-...-..+...+...|-...|..+++++ ..|...+.+|...|+..+|..+..+..+ |++..|..+......
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 444445566778888899999999999874 5677889999999999999999887665 677888888888777
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHH
Q 010961 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361 (496)
Q Consensus 282 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 361 (496)
..-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 77788999888765432 11112222334789999999998877764 45667888888888999999999999
Q ss_pred HHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 362 FSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 362 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
|.... +.+...||.+-.+|.+.++..+|...+.+..+- +...|...+....+.|.+++|.+.+.++.+
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 98877 556678999999999999999999999998873 455677777888899999999999998865
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.6e-06 Score=69.96 Aligned_cols=175 Identities=10% Similarity=-0.079 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC-c-hHHHHHHHHHHHHhcCChhhHHHHHHhccc--C-chh---hHH
Q 010961 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVI-D-DVIVASALLDTYSKRGMPSDACKLFSELKV--Y-DTI---LLN 374 (496)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~---~~~ 374 (496)
....+..+...+...|+++.|...++.+.+.... | ....+..+..++...|++++|...++++.. | ++. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445555666667777777777777777664321 1 123455566677777777777777776651 2 121 233
Q ss_pred HHHHHHHhc--------CCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 375 TMITVYSSC--------GRIEDAKHIFRTMPN--KSL-ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 375 ~l~~~~~~~--------~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
.+..++... |+++.|.+.|+.+.+ |+. ..+..+... ..+... . ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--------------~~~~~~---~-~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--------------DYLRNR---L-AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--------------HHHHHH---H-HHHHHHHH
Confidence 333333332 455555555555543 221 111111000 000000 0 00011344
Q ss_pred HHHhccCchhhHHHHHHHHHHcCC--CchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 444 SACANISSLELGEQVFARVTIIGL--DSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
..+.+.|++++|...++...+... +.....+..++.++.+.|++++|.++++
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556677788888887777766432 1234667777777888888888777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-05 Score=72.07 Aligned_cols=240 Identities=15% Similarity=0.076 Sum_probs=173.4
Q ss_pred HHHHHhcCChhhHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCCHHH
Q 010961 214 VNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNEDTE 287 (496)
Q Consensus 214 ~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 287 (496)
..-+.+.|++.+|.-.|+...+ | +...|..|.......++-..|+..+++..+-+ ..+.-.|.-.|...|.-..
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 3445678999999999998775 3 35689999999999999999999999887744 4566667778889999999
Q ss_pred HHHHHHHHHHCCCCC--------CHHHHHHHHHHHhcccchhhHHHHHHHHH-HcCCCchHHHHHHHHHHHHhcCChhhH
Q 010961 288 ALLLFHKMRRNGVLE--------DASTLASVLSACSSLGFLEHGKQVHGHAC-KVGVIDDVIVASALLDTYSKRGMPSDA 358 (496)
Q Consensus 288 a~~~~~~m~~~g~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a 358 (496)
|+..++.-+....+- +...-.. +.+.....+....++|-++. ..+..+|+.++..|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998886542100 0000000 12223334445555555554 445558888899999999999999999
Q ss_pred HHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhhHHHHHHHHHh---
Q 010961 359 CKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSL-ISWNSMIVGLSQNGSPIEALDLFCNMNK--- 429 (496)
Q Consensus 359 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~--- 429 (496)
.+.|+... +.|..+||.|...++...+.++|+..|++..+ |+. .+.-.|.-.|...|.+++|.+.|-....
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99999887 55778999999999999999999999999986 664 4556677889999999999998877544
Q ss_pred CCC------CCCHHHHHHHHHHHhccCchhhH
Q 010961 430 LDL------RMDKFSLASVISACANISSLELG 455 (496)
Q Consensus 430 ~~~------~p~~~~~~~l~~~~~~~g~~~~a 455 (496)
.+- .++...|.+|=.++.-.++.+.+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 211 11233555555555555554433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00017 Score=64.27 Aligned_cols=125 Identities=11% Similarity=0.076 Sum_probs=53.9
Q ss_pred hHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC---CCh----hhHHHH
Q 010961 357 DACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQN---GSP----IEALDL 423 (496)
Q Consensus 357 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~---g~~----~~a~~~ 423 (496)
++..+++++. +.|...|+....++...|+++++++.++++.+ .|..+|+.....+.+. |.. ++.++.
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 3444444443 23334444444555555555555555555543 2333444443333322 111 234444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhcc----CchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 424 FCNMNKLDLRMDKFSLASVISACANI----SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483 (496)
Q Consensus 424 ~~~m~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 483 (496)
..++.... +-|...|+.+...+... +...+|...+....+.++ .++.....|++.|+.
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 44444431 22444455444444442 223345555554444322 244455555555554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00019 Score=71.69 Aligned_cols=243 Identities=8% Similarity=0.051 Sum_probs=149.6
Q ss_pred hHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 010961 28 HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNC-FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104 (496)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 104 (496)
+....-....|+....+..|+..|...+++++|.++.+...+ |+. ..|..+...+.+.++...+..+ .+
T Consensus 18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~------ 89 (906)
T PRK14720 18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL------ 89 (906)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh------
Confidence 344445677888888999999999999999999999886655 433 3444444567777776666555 22
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhhcCC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHH
Q 010961 105 SWNMLISGFAKAGELKTARTLFNDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182 (496)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 182 (496)
+.......++.-...+...+.. .+..++..+..+|-+.|+.++|...++++.+. .+-|....|.+...+
T Consensus 90 -----l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~----D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 90 -----IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA----DRDNPEIVKKLATSY 160 (906)
T ss_pred -----hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CcccHHHHHHHHHHH
Confidence 2222233333223333333332 13346778888888999999999999998882 233567788888888
Q ss_pred HccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHH---HHHHHhcCChhHHHH
Q 010961 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL---ISGYANCGKMNDARR 259 (496)
Q Consensus 183 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~ 259 (496)
+.. ++++|.+++.+.+.. +...+++..+..+|.++.+-++.-+..+ .+.....-...
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~---- 220 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFT---- 220 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccc----
Confidence 877 888888888776654 5556677777777777775332222211 11111110011
Q ss_pred HHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010961 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315 (496)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 315 (496)
.-+.++-.+-..|-..+++++++.+++.+.+.. +-|......++.+|.
T Consensus 221 -------~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 -------RLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred -------hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 113345555566666777777777777777653 334444555555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0005 Score=62.21 Aligned_cols=136 Identities=13% Similarity=0.092 Sum_probs=74.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 010961 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLA-SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356 (496)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (496)
.+...|++++|...++.+... .|+...|. .....+...++.++|.+.++.+.... +......-.+.++|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChH
Confidence 344556666666666666554 34333333 33344556666666666666666542 112444455556666666666
Q ss_pred hHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 357 DACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 357 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+|+.+++... +.|+..|..|..+|...|+..++... ....|...|+++.|...+....+.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A--------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA--------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH--------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 6666666555 44555666666666666655555432 223455556666666666555554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.5e-05 Score=67.93 Aligned_cols=198 Identities=13% Similarity=0.102 Sum_probs=112.9
Q ss_pred hhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcC-ChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCH--
Q 010961 15 CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG-NPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHK-- 88 (496)
Q Consensus 15 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-- 88 (496)
+...+..++|..+...+++.. |....+|+.-...+...| ++++++..++++.+ .+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence 334567777777777777765 455546666666666666 56777777777664 2344565554445555542
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHc---CCH----HHHHH
Q 010961 89 EKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRN---GFA----REAVR 155 (496)
Q Consensus 89 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---~~~----~~a~~ 155 (496)
++++++++++.+ .|..+|+....++...|+++++++.++++.+ .|..+|+....++.+. |.. ++.++
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 566677766655 3455666666667777777777777777764 3555666655555443 222 34555
Q ss_pred HHHHHHHchhccCCcCHHHHHHHHHHHHcc----chHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh
Q 010961 156 LFKELNSDLVERLQCDAFILATVIGACADL----AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219 (496)
Q Consensus 156 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (496)
...+.... .+-|...|+-+...+... +...++.....+..+.++. +......|++.|+.
T Consensus 205 y~~~aI~~----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILA----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHh----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 55555441 222334555555444442 2234455555555443322 44455556666654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00023 Score=71.01 Aligned_cols=150 Identities=8% Similarity=0.060 Sum_probs=89.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (496)
++-.+..+|-+.|+.++|...|+++.+.. +-|....+.+.-.++.. ++++|.+++.++... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 55566667777777777777777777765 45566666666666666 777777776665543 45
Q ss_pred hcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhC-CCCChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
..+++.++.++|.++...++.-+..+.....+. ...+ ...-+.++-.+-..|-..++++++..+++...+
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki---------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKV---------LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHH---------HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 555667777777766644433222222111100 0000 112334455555667777788888888888887
Q ss_pred CCCCCCHHHHHHHHHHHh
Q 010961 430 LDLRMDKFSLASVISACA 447 (496)
Q Consensus 430 ~~~~p~~~~~~~l~~~~~ 447 (496)
.. +-|.....-++.+|.
T Consensus 252 ~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 252 HD-NKNNKAREELIRFYK 268 (906)
T ss_pred cC-CcchhhHHHHHHHHH
Confidence 63 346666667776665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-05 Score=62.54 Aligned_cols=94 Identities=10% Similarity=-0.057 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
.+..+...+...|++++|...|+.... .+...|..+..++...|++++|...|++..... +.+...+..+..++..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 333444555555666666665555543 244566667777777777777777777777653 4466677777777777
Q ss_pred cCchhhHHHHHHHHHHcC
Q 010961 449 ISSLELGEQVFARVTIIG 466 (496)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~ 466 (496)
.|++++|...++...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777766643
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.6e-05 Score=63.64 Aligned_cols=118 Identities=11% Similarity=0.049 Sum_probs=70.8
Q ss_pred ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHH-HhcCC--HHHHH
Q 010961 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVY-SSCGR--IEDAK 390 (496)
Q Consensus 317 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~-~~~~~--~~~a~ 390 (496)
.++.+++...+....+.+ +.+...|..+...|...|++++|...|++.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 445556666666655554 4566667777777777777777777777665 33444555555543 44444 35666
Q ss_pred HHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH
Q 010961 391 HIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436 (496)
Q Consensus 391 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 436 (496)
+++++..+ .+..++..+...+...|++++|+..|+++.+.. +|+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 66666554 244556666666666677777777776666653 4443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-05 Score=62.01 Aligned_cols=106 Identities=9% Similarity=-0.043 Sum_probs=68.2
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCch
Q 010961 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338 (496)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 338 (496)
.+|++..+.++..+......+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+.+ +.+
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~ 91 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASH 91 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 34444444444445555666667777777777777766653 4455666666666777777777777777777654 445
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
...+..+..++...|++++|+..|+...
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666777777777777777777655
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.3e-05 Score=65.93 Aligned_cols=184 Identities=10% Similarity=-0.027 Sum_probs=126.6
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH--HH
Q 010961 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA---STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV--IV 341 (496)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 341 (496)
.....+..+...+...|++++|...|+++.... +.+. ..+..+..++...|++++|...++.+.+....... ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345677788889999999999999999998753 2222 45667778899999999999999999886432221 23
Q ss_pred HHHHHHHHHhc--------CChhhHHHHHHhccc--Cch-hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHH
Q 010961 342 ASALLDTYSKR--------GMPSDACKLFSELKV--YDT-ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410 (496)
Q Consensus 342 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 410 (496)
+..+..++... |+.++|.+.|+.+.. |+. ..+..+..... ..... ......+...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~~----------~~~~~~~a~~ 175 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNRL----------AGKELYVARF 175 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHHH----------HHHHHHHHHH
Confidence 44455555544 678899999998872 332 22222211111 00000 0112256677
Q ss_pred HHhCCChhhHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 411 LSQNGSPIEALDLFCNMNKLDL--RMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 411 ~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
|.+.|++.+|...+++..+..- +.....+..+..++...|++++|...++.+...
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8899999999999999887521 223567889999999999999999998887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0032 Score=61.41 Aligned_cols=464 Identities=12% Similarity=0.084 Sum_probs=250.6
Q ss_pred hccCccchhhhhhHHHHHhccCCCchHHHHHHHHHH--HhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHH
Q 010961 16 NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMY--MRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEK 90 (496)
Q Consensus 16 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 90 (496)
...+++..|......+.+.. |+. .|...+.++ .+.|+.++|..+++.... .|..+...+-.+|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 45678899999999988876 444 345556654 467999999999987754 477889999999999999999
Q ss_pred HHHHHhhCCC--CChhhHHHHHHHHHhcCChhH----HHHHHhhcCCCCcccHHHHHHHHHHcCC----------HHHHH
Q 010961 91 SLQLFNVMPQ--KNDFSWNMLISGFAKAGELKT----ARTLFNDMPRRNAIAWNSMIHCYVRNGF----------AREAV 154 (496)
Q Consensus 91 a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~ 154 (496)
|..+|++..+ |+..-...+..+|.|.+.+.+ |.++++..++. ...+-++++.....-. ..-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999999987 776667777888888887654 56666655543 4444455555544311 23455
Q ss_pred HHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHH-HHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS-HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
+.++.+... .|---+..-...-...+...+++++|..++. ...+.-...+...-+--+..+...+++.+..++-.++
T Consensus 175 ~m~~~~l~~--~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 175 KMVQKLLEK--KGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHhcc--CCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 566666664 2211122223333445667888999999884 3333333334444456677888888888888877776
Q ss_pred CCCChHHHHHHHHHH----------------HhcCChhHHHHHHHhcCCC-CcchHHHHHHHH---HhCCCHHHHHHHHH
Q 010961 234 KEPDDFCLSALISGY----------------ANCGKMNDARRVFDRTTDT-SSVMWNSMISGY---ISNNEDTEALLLFH 293 (496)
Q Consensus 234 ~~~~~~~~~~l~~~~----------------~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~---~~~~~~~~a~~~~~ 293 (496)
...+..-|...+..+ ...+..+...+..++.... .--.|-+-+..+ ..-|+.+++...|-
T Consensus 253 l~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 253 LEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred HHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 642211133333321 1222333333333333321 111233333333 34577777655443
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC--chHH---HHHHHHHHHHhcCC-----hhhHHHHHH
Q 010961 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI--DDVI---VASALLDTYSKRGM-----PSDACKLFS 363 (496)
Q Consensus 294 ~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~---~~~~l~~~~~~~~~-----~~~a~~~~~ 363 (496)
+- -|-.|- |..=+..|...=..++-..++......... .+.. .+...+..-.-.|. -+.-..++.
T Consensus 333 ~k--fg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~ 407 (932)
T KOG2053|consen 333 KK--FGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVR 407 (932)
T ss_pred HH--hCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHH
Confidence 22 222221 111111111111112222222222211000 0000 01111111111221 111122221
Q ss_pred hcc----c---------Cc---------hhhHHHHHHHHHhcCCHH---HHHHHHhhCCCC---ChhhHHHHHHHHHhCC
Q 010961 364 ELK----V---------YD---------TILLNTMITVYSSCGRIE---DAKHIFRTMPNK---SLISWNSMIVGLSQNG 415 (496)
Q Consensus 364 ~~~----~---------~~---------~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~---~~~~~~~l~~~~~~~g 415 (496)
+.. . |+ .-+.+.|++.+.+.++.. +|+-+++..... |..+=-.+|+.|.-.|
T Consensus 408 kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lG 487 (932)
T KOG2053|consen 408 KLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLG 487 (932)
T ss_pred HHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhc
Confidence 111 0 11 114567778888877765 455555555442 3444456788888889
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHh
Q 010961 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 416 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (496)
-...|.++|+.+.-+.++.|...|.. ...+.-.|++..+...+......--..-..+-. +|....+.|.+.+-.++
T Consensus 488 a~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em 563 (932)
T KOG2053|consen 488 AFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEM 563 (932)
T ss_pred CChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHH
Confidence 99999999998887777777555443 234556678888888877544321011112222 23333466666665544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00085 Score=55.34 Aligned_cols=185 Identities=14% Similarity=0.099 Sum_probs=119.0
Q ss_pred cCCHHHHHHHHHHHHHchhcc-CCcCHH-HHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChh
Q 010961 147 NGFAREAVRLFKELNSDLVER-LQCDAF-ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224 (496)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (496)
..+.++.++++.++......| ..|+.. .|..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 456788888888887654455 666665 45556677778888888998888887754 323333333333445678899
Q ss_pred hHHHHHHhcCCCC---hHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010961 225 SANQVLNMMKEPD---DFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298 (496)
Q Consensus 225 ~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 298 (496)
+|.++++.+.+.| .+++-.-+...-..|+-..|++-+....+ .|...|.-+...|...|++++|.-.++++.-.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 9999998887533 34555555555566666666666655444 56777888888888888888888888877764
Q ss_pred CCCCC-HHHHHHHHHHHh---cccchhhHHHHHHHHHHcC
Q 010961 299 GVLED-ASTLASVLSACS---SLGFLEHGKQVHGHACKVG 334 (496)
Q Consensus 299 g~~~~-~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~ 334 (496)
.|. +-.|..+...+. ...+.+.+.++|....+..
T Consensus 184 --~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 --QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred --CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 343 333333333322 2335566677777766654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0033 Score=57.75 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChhhHHHHH
Q 010961 285 DTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLF 362 (496)
Q Consensus 285 ~~~a~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 362 (496)
.+.....+++....- ..|+ -+|..+++.-.+..-++.|+.+|.++.+.+..+ ++.++++++..|| .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 556666666666542 3343 356677777777788888888998888877665 7777888887666 46677888888
Q ss_pred Hhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 363 SELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK------SLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 363 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+--. ..++......+.-+...++-..+..+|++.... ....|..++.--..-|+...++++-+++...
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8665 445555566777777888888888888877653 3357888888888888888888887776653
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-06 Score=48.70 Aligned_cols=33 Identities=36% Similarity=0.569 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 435 (496)
+|++++.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.7e-05 Score=69.88 Aligned_cols=121 Identities=18% Similarity=0.139 Sum_probs=62.0
Q ss_pred HHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchH
Q 010961 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188 (496)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 188 (496)
|+..+...++++.|..+|+++.+.++.....+++.+...++-.+|++++++..+. .+-+...+..-...+...++.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~----~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE----NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCH
Confidence 3444444555555555555555554445555555555555555555555555541 222333444444445555555
Q ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 010961 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 189 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
+.|.++.+++.+..+. +..+|..|..+|...|+++.|+-.++.++
T Consensus 251 ~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555544322 33455555555555555555555555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.1e-05 Score=69.61 Aligned_cols=116 Identities=14% Similarity=0.045 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhh
Q 010961 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIE 419 (496)
Q Consensus 343 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 419 (496)
..|+..+...++++.|..+|+++...++.....++..+...++-.+|.+++++..+. +......-...+.+.++++.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 334444445556666666666655444444445555555555555555555554431 22233333444555555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCchhhHHHHHH
Q 010961 420 ALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFA 460 (496)
Q Consensus 420 a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (496)
|+++.+++... .| +..+|..|..+|...|+++.|+..+.
T Consensus 253 AL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 253 ALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 55555555553 33 23355555555555555555555444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00015 Score=59.97 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=48.8
Q ss_pred CChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hcccc--hhhHHH
Q 010961 252 GKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC-SSLGF--LEHGKQ 325 (496)
Q Consensus 252 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~-~~~~~--~~~a~~ 325 (496)
++.+++...+++..+ .+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 333444444443332 233445555555555555555555555544432 22333333333332 33333 245555
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 365 (496)
++++..+.+ +.+...+..+...+...|++++|+..|+++
T Consensus 132 ~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 132 MIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555544443 223334444444444444444444444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00015 Score=71.47 Aligned_cols=132 Identities=7% Similarity=-0.068 Sum_probs=109.2
Q ss_pred CCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHH
Q 010961 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSM 407 (496)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 407 (496)
....+...+..|.......|..++|..+++... +.+......+...+.+.+++++|+..+++... | +......+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 345668888889999999999999999999887 44556777888899999999999999998876 3 44567778
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 408 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
..++.+.|++++|..+|++....+ +-+..++..+..++-..|+.++|...|+...+.-
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 888889999999999999999842 3457788889999999999999999999887753
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00085 Score=60.79 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=80.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHH-HHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHH
Q 010961 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV-IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (496)
..-.+...|++++|...+..+.. ..|+...|..+ ...+...++..+|.+.++.++...+. .....-.+..++.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~-----~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all 385 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIA-----AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHH
Confidence 33344556777777777777665 34444444333 35666667777777777766654332 1344455666667
Q ss_pred hcCChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 219 KCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 219 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
+.|++.+|+.+++.... .|+..|..|..+|...|+..++..-. ...|...|+++.|+..+...
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHH
Confidence 77777777776666552 34556666666666666655543332 24455566666666666655
Q ss_pred HHC
Q 010961 296 RRN 298 (496)
Q Consensus 296 ~~~ 298 (496)
.+.
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.3e-06 Score=47.58 Aligned_cols=34 Identities=35% Similarity=0.555 Sum_probs=29.4
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 303 (496)
.+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888999999999999999999988888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.006 Score=57.86 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcC
Q 010961 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265 (496)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (496)
...-.+.+++...|.-++|.+.+-+...|. ..+..|...++|.+|.++-++..
T Consensus 853 ~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 853 ELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444455555555555554444444333 22334445555555555555443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.1e-06 Score=47.29 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 434 (496)
.+|+.++.+|++.|+++.|.++|+.|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.8e-06 Score=46.17 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=26.3
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~ 302 (496)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888887776
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.013 Score=57.50 Aligned_cols=429 Identities=12% Similarity=0.111 Sum_probs=225.2
Q ss_pred HhcCChHHHHHHhhhCCC--CChhhHHHHHHHH--HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHH
Q 010961 52 MRCGNPTDALLLFDEMPR--RNCFSWNAMIEGF--MKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTART 124 (496)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 124 (496)
...+++.+|....+++.+ ||. .|...+.++ .+.|+.++|..+++.... .|..|...+-.+|.+.++.++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 356788888888887765 333 344444443 478999999988887765 467788888888999999999999
Q ss_pred HHhhcCC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccc----------hHHHHH
Q 010961 125 LFNDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA----------ALEYGK 192 (496)
Q Consensus 125 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----------~~~~a~ 192 (496)
++++... |+......+..+|++.+.+.+-.+.=-++-+. .+-+.+.|-++++...+.. -...|.
T Consensus 99 ~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 99 LYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN----FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999886 44344455666777777766544444444442 3445566666666654331 123455
Q ss_pred HHHHHHHHcC-CCcchhHHHHHHHHHHhcCChhhHHHHHHh-----cCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCC
Q 010961 193 QIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNM-----MKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266 (496)
Q Consensus 193 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (496)
+..+.+.+.+ .--+..-...-...+...|.+++|..++.. ....+...-+.-+..+...++|.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5666665544 211222222223344556788888888732 2223444445566777778888877777766665
Q ss_pred CCcchHHHHHHHHHh----------------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---cccchhhHHHHH
Q 010961 267 TSSVMWNSMISGYIS----------------NNEDTEALLLFHKMRRNGVLEDASTLASVLSACS---SLGFLEHGKQVH 327 (496)
Q Consensus 267 ~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~---~~~~~~~a~~~~ 327 (496)
.+..-|...+..+.+ .+..+...+...+.... -....|-+-+.... .-|+.+++...|
T Consensus 255 k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~---~~Rgp~LA~lel~kr~~~~gd~ee~~~~y 331 (932)
T KOG2053|consen 255 KGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGS---KSRGPYLARLELDKRYKLIGDSEEMLSYY 331 (932)
T ss_pred hCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcc---cccCcHHHHHHHHHHhcccCChHHHHHHH
Confidence 333224333332211 11122222222222211 01112222222222 335555544333
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc-Cchhh--------HHHHHHHHHhcCCH-----HHHHHHH
Q 010961 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTIL--------LNTMITVYSSCGRI-----EDAKHIF 393 (496)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~--------~~~l~~~~~~~~~~-----~~a~~~~ 393 (496)
-+ +.|..| .|..=+..|...=..++-..++..... .+..+ +...+..-...|.+ +.-..++
T Consensus 332 ~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~ 406 (932)
T KOG2053|consen 332 FK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYV 406 (932)
T ss_pred HH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHH
Confidence 22 222222 111111112111122222222222221 00000 11222222222211 1111222
Q ss_pred hhC----CC---------CCh---------hhHHHHHHHHHhCCChhh---HHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 394 RTM----PN---------KSL---------ISWNSMIVGLSQNGSPIE---ALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 394 ~~~----~~---------~~~---------~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
++. .+ |.. -+-+.|++.+-+.++... |+-+++.-.... +-|..+=-.+|+.|.-
T Consensus 407 ~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~ 485 (932)
T KOG2053|consen 407 RKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSY 485 (932)
T ss_pred HHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHH
Confidence 111 11 111 245778888888887664 444555544442 3355666778899999
Q ss_pred cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.|-+..|..+++.+.-.++..|..-|. +...+.-.|++..+...++
T Consensus 486 lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~ 531 (932)
T KOG2053|consen 486 LGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFN 531 (932)
T ss_pred hcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHH
Confidence 999999999999886666776654443 3445566788888777654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0068 Score=54.04 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHH
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 290 (496)
+..+.-+...|+...|.++-.+..=|+...|...+.+++..++|++-.++... +.++..|..++..+.+.|+..+|..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 33344445555566666665555556655555555555555555555554332 3344555555555555555555555
Q ss_pred HHHH
Q 010961 291 LFHK 294 (496)
Q Consensus 291 ~~~~ 294 (496)
++..
T Consensus 259 yI~k 262 (319)
T PF04840_consen 259 YIPK 262 (319)
T ss_pred HHHh
Confidence 5544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0021 Score=53.13 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=54.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352 (496)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (496)
..++-+....|+.+-|...++.+... ++-+...-..-.--+-..|++++|.++++.+.+.+ +.|..++..=+...-..
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 33344444455555555555555443 11111111111111233455555555555555443 33334444333344444
Q ss_pred CChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 010961 353 GMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTM 396 (496)
Q Consensus 353 ~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 396 (496)
|+.-+|++-+.... ..|...|.-+...|...|++++|.-.++++
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 44444444444433 345555555555555555555555555554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00064 Score=60.12 Aligned_cols=157 Identities=10% Similarity=0.142 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC-------C--ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-------CC--hh
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR-------R--NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------KN--DF 104 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~--~~ 104 (496)
.|......|...|++++|.+.|.+... + -...|.....++.+. ++++|.+.+++..+ ++ ..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 445555555555666555555554421 1 012233333343333 55555555554332 11 12
Q ss_pred hHHHHHHHHHhc-CChhHHHHHHhhcCC----CC-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHchh--ccCCcCH
Q 010961 105 SWNMLISGFAKA-GELKTARTLFNDMPR----RN-----AIAWNSMIHCYVRNGFAREAVRLFKELNSDLV--ERLQCDA 172 (496)
Q Consensus 105 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~p~~ 172 (496)
.+..+...|-.. |++++|.+.|++..+ .+ ...+..+...+.+.|++++|+++|++...... ...+.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 334455556565 666666666665542 11 12344555666666667777666666654210 0011122
Q ss_pred H-HHHHHHHHHHccchHHHHHHHHHHHHH
Q 010961 173 F-ILATVIGACADLAALEYGKQIHSHILV 200 (496)
Q Consensus 173 ~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (496)
. .|...+-++...|++..|.+.++....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 122222344445566666666665554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00084 Score=66.37 Aligned_cols=175 Identities=10% Similarity=-0.010 Sum_probs=134.6
Q ss_pred CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHH
Q 010961 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTM 376 (496)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l 376 (496)
.+.+...+..|.....+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|+..+++.. +.+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 45668888889999999999999999999999874 4456677788899999999999999999988 4455677888
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchh
Q 010961 377 ITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 453 (496)
..++.+.|++++|..+|+++..++ ..++..+...+...|+.++|...|++..+.. .|-..-|+.++ ++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHH
Confidence 899999999999999999998643 5688888999999999999999999998863 55556666554 3444
Q ss_pred hHHHHHHHHHH----cCCCchHHHHHHHHHHHH
Q 010961 454 LGEQVFARVTI----IGLDSDQIISTSLVDFYC 482 (496)
Q Consensus 454 ~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~ 482 (496)
.-..+++++.- .|.+.......+.+..|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIG 266 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHh
Confidence 44555555532 233333444555555444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00048 Score=54.02 Aligned_cols=121 Identities=16% Similarity=0.216 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC---HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcch--hHHH
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD---AFILATVIGACADLAALEYGKQIHSHILVNGLDFDS--VLGS 211 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 211 (496)
|..++..+ ..++...+...++.+... .+.+ ......+...+...|++++|...|++.......++. ....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 33344443 366666666666666652 1111 223333445566667777777777766665533322 2333
Q ss_pred HHHHHHHhcCChhhHHHHHHhcCCCC--hHHHHHHHHHHHhcCChhHHHHHHH
Q 010961 212 SLVNLYGKCGDFNSANQVLNMMKEPD--DFCLSALISGYANCGKMNDARRVFD 262 (496)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~ 262 (496)
.|...+...|++++|+..++....+. ...+......+.+.|++++|...|+
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566666677777777766544322 2233334444444444444444444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00012 Score=56.87 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 375 TMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
.+...+...|++++|...|+.+.. .+...|..+...+...|++++|...+++..+.+ +.+...+..+...+...|+
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 334444445555555555544432 244566666666777777777777777666653 4455666666667777777
Q ss_pred hhhHHHHHHHHHHc
Q 010961 452 LELGEQVFARVTII 465 (496)
Q Consensus 452 ~~~a~~~~~~~~~~ 465 (496)
++.|...++...+.
T Consensus 101 ~~~A~~~~~~al~~ 114 (135)
T TIGR02552 101 PESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00018 Score=55.87 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 010961 342 ASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNG 415 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g 415 (496)
...+...+...|++++|...|+... +.++..+..+...+...|++++|...++...+ .+...+..+...|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 3344444555555555555555443 23344555555555555555555555555533 34556666777888888
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHH
Q 010961 416 SPIEALDLFCNMNKLDLRMDKFS 438 (496)
Q Consensus 416 ~~~~a~~~~~~m~~~~~~p~~~~ 438 (496)
++++|...|++..+. .|+...
T Consensus 100 ~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 100 EPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred CHHHHHHHHHHHHHh--ccccch
Confidence 888888888887775 454433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0079 Score=57.11 Aligned_cols=204 Identities=15% Similarity=0.074 Sum_probs=135.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhhHHHH----------HHHHHhcCChhHHHHHHhhcCCCCcccHH
Q 010961 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNML----------ISGFAKAGELKTARTLFNDMPRRNAIAWN 138 (496)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 138 (496)
|-+..|..+.......-.++.|...|-+... +....-..| ...-+--|++++|++++-.+..+|
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-----
Confidence 5667788888777766677777777766654 322111111 111223588999999998888776
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHH
Q 010961 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (496)
..|..+.+.|+|-...++++.--.. ....--...++.+...++....++.|.+.|..-.. ....+.++.
T Consensus 765 LAielr~klgDwfrV~qL~r~g~~d--~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly 833 (1189)
T KOG2041|consen 765 LAIELRKKLGDWFRVYQLIRNGGSD--DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLY 833 (1189)
T ss_pred hhHHHHHhhhhHHHHHHHHHccCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHH
Confidence 3567778888988888877643211 01111234677788888888888888888865421 135677788
Q ss_pred hcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
+..++++-..+-..+.+. ....-.+..++.+.|.-++|.+.|-+-..|. ..+..|...++|.+|.++-+..
T Consensus 834 ~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 834 RLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 878888777777766653 3455667788888888888888877665553 3445666777787877766554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00085 Score=52.64 Aligned_cols=91 Identities=10% Similarity=0.091 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH--HHHHHHH
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLED---ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV--IVASALL 346 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 346 (496)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344443 3566666666666665542 222 111222334455566666666666666655422221 1222334
Q ss_pred HHHHhcCChhhHHHHHHh
Q 010961 347 DTYSKRGMPSDACKLFSE 364 (496)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~ 364 (496)
..+...|++++|+..++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 444455555555555543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0013 Score=58.12 Aligned_cols=104 Identities=11% Similarity=0.134 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhcccchhhHHHHHHHHHHc--CCCch--HH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVL-----EDAS-TLASVLSACSSLGFLEHGKQVHGHACKV--GVIDD--VI 340 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~ 340 (496)
.+..+...+.+.|++++|+++|++....-.. .+.. .|...+-++...||...|...++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4455566677777777777777776654221 1111 1122222344456666666666665543 22222 33
Q ss_pred HHHHHHHHHHhc--CChhhHHHHHHhcccCchhhHH
Q 010961 341 VASALLDTYSKR--GMPSDACKLFSELKVYDTILLN 374 (496)
Q Consensus 341 ~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~ 374 (496)
....|+.++-.. ..++.++.-|+.+.+.|..--.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~ 272 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTK 272 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHH
Confidence 344455555432 2445555555555555544333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.1e-05 Score=42.70 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCC
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLD 431 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 431 (496)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.02 Score=51.13 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHH
Q 010961 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 425 (496)
+.-+...|+...|.++-.+..-|+...|-..+.+++..+++++-.++... ++++..|..++.+|.+.|+..+|..++.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHH
Confidence 44445556666666666666666666666666666666666666655443 4455666666666666666666666665
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCchhhHHHH
Q 010961 426 NMNKLDLRMDKFSLASVISACANISSLELGEQV 458 (496)
Q Consensus 426 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
+ +++ ..-+..|.+.|++.+|.+.
T Consensus 262 k-----~~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 262 K-----IPD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred h-----CCh-----HHHHHHHHHCCCHHHHHHH
Confidence 5 111 2233445555666555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.1e-05 Score=42.02 Aligned_cols=30 Identities=43% Similarity=0.713 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGV 300 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 300 (496)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00055 Score=48.83 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccc--------chhhHHHHHHHHHHcCCCchHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASVLSACSSLG--------FLEHGKQVHGHACKVGVIDDVIV 341 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 341 (496)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|++|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566677777999999999999999999 899999999999876532 34567788999999999999999
Q ss_pred HHHHHHHHHh
Q 010961 342 ASALLDTYSK 351 (496)
Q Consensus 342 ~~~l~~~~~~ 351 (496)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00076 Score=48.12 Aligned_cols=81 Identities=15% Similarity=0.044 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccC-CcCHHHHHHHHHHHHccc--------hHHHHHHHHHHHHHcCCCcc
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERL-QCDAFILATVIGACADLA--------ALEYGKQIHSHILVNGLDFD 206 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~ 206 (496)
+....|..+...+++.....+|+.+++ .|+ .|+..+|+.++.+..+.. ..-....+|+.|+..+++|+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkR---N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~ 103 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKR---NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPN 103 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHh---cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCc
Confidence 344566677777999999999999999 578 899999999998876542 34567889999999999999
Q ss_pred hhHHHHHHHHHHh
Q 010961 207 SVLGSSLVNLYGK 219 (496)
Q Consensus 207 ~~~~~~l~~~~~~ 219 (496)
..+|+.++..+.+
T Consensus 104 ~etYnivl~~Llk 116 (120)
T PF08579_consen 104 DETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.033 Score=50.45 Aligned_cols=217 Identities=13% Similarity=0.032 Sum_probs=123.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHH----
Q 010961 273 NSMISGYISNNEDTEALLLFHKMRRNGVLE----DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA---- 344 (496)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 344 (496)
..+...+.. +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+..+.-.. |+...-..
T Consensus 265 ~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls 340 (549)
T PF07079_consen 265 EPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLS 340 (549)
T ss_pred HHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcC
Confidence 334444443 5666666666555443222 23567778888888888888888888776543 33222111
Q ss_pred ---HHHHHHhc-C---ChhhHHHHHHhcccCch---hhHHHHHH---HHHhcCC-HHHHHHHHhhCCC---CChhhHHH-
Q 010961 345 ---LLDTYSKR-G---MPSDACKLFSELKVYDT---ILLNTMIT---VYSSCGR-IEDAKHIFRTMPN---KSLISWNS- 406 (496)
Q Consensus 345 ---l~~~~~~~-~---~~~~a~~~~~~~~~~~~---~~~~~l~~---~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~- 406 (496)
+-+..+.. . +...=+.+|..+...|. .....|+. -+-+.|. -++|+++++.+.+ -|...-|.
T Consensus 341 ~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v 420 (549)
T PF07079_consen 341 PKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV 420 (549)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH
Confidence 11222211 1 11222333443332222 12233333 3445555 7788888888765 23322222
Q ss_pred ---HHHHHHh---CCChhhHHHHHHHHHhCCCCCC----HHHHHHHHHH--HhccCchhhHHHHHHHHHHcCCCchHHHH
Q 010961 407 ---MIVGLSQ---NGSPIEALDLFCNMNKLDLRMD----KFSLASVISA--CANISSLELGEQVFARVTIIGLDSDQIIS 474 (496)
Q Consensus 407 ---l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 474 (496)
+=.+|.. ...+.+-+.+-+-..+.|++|- ...-+.|.+| +...|++.++.-.-..+.+ +.|++.+|
T Consensus 421 ~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~ 498 (549)
T PF07079_consen 421 FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAY 498 (549)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHH
Confidence 2223322 2233444444445567788773 3345555555 4567999988877666655 77899999
Q ss_pred HHHHHHHHhcCChHHHHHhhh
Q 010961 475 TSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.-++-++....++++|..++.
T Consensus 499 RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 499 RLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999998875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.01 Score=50.89 Aligned_cols=64 Identities=11% Similarity=-0.003 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHH-H---HHHHHHHHHccchHHHHHHHHHHHHHcCCC
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF-I---LATVIGACADLAALEYGKQIHSHILVNGLD 204 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 204 (496)
.+-.....+.+.|++++|++.|+++.. ..|+.. . ...+..++.+.++++.|...+++..+..+.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~-----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 333445555667788888888887776 223221 1 234456667777777777777777765544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00049 Score=63.02 Aligned_cols=115 Identities=10% Similarity=0.115 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC-C-----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 370 TILLNTMITVYSSCGRIEDAKHIFRTMPN-K-----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
+.....+++.+....+++.+..++.+... | -..|..++++.|...|..+.++.+++.=...|+-||..+++.|+
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 33444455555555556666666555543 2 22455688888888888888888888888888888989999999
Q ss_pred HHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 484 (496)
+.+.+.|++..|.++...|...+...++.++.--+.++.+.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 98888899988888888777666656666665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00089 Score=51.65 Aligned_cols=107 Identities=8% Similarity=0.007 Sum_probs=86.7
Q ss_pred HHHHHHhcc-cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCC
Q 010961 358 ACKLFSELK-VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433 (496)
Q Consensus 358 a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 433 (496)
.+.++..+. +.+....-.+...+...|++++|.++|+-+.. | +...|-.|..++-..|++.+|+..|....... +
T Consensus 22 sl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ 100 (157)
T PRK15363 22 SLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-I 100 (157)
T ss_pred cHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 345555555 55555666677788899999999999998764 4 55678888889999999999999999998875 4
Q ss_pred CCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 434 MDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 434 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
-|+..+-.+..++...|+.+.|.+.|+..+..
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57888999999999999999999999977663
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00048 Score=49.32 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 375 TMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
.+...+...|++++|...++.+.+ | +...+..+...+...|++++|.+.+++..... +.+..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 344444555555555555555432 1 22344444555555555555555555554432 2233344445555555555
Q ss_pred hhhHHHHHHHHH
Q 010961 452 LELGEQVFARVT 463 (496)
Q Consensus 452 ~~~a~~~~~~~~ 463 (496)
++.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00057 Score=55.30 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=61.5
Q ss_pred CCChhhHHHHHHHHHh-----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----------------CchhhHH
Q 010961 398 NKSLISWNSMIVGLSQ-----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI----------------SSLELGE 456 (496)
Q Consensus 398 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~a~ 456 (496)
..+-.+|..+++.|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3555666666666653 355666666777777777777777777777776441 2345677
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
++++.|+..|+-||..++..|++.+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 788888888888888888888888766553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.6e-05 Score=52.82 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=57.2
Q ss_pred CCChhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHH
Q 010961 414 NGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 492 (496)
.|+++.|+.+++++.+..- .|+...+..+..++.+.|++++|..+++. .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5788899999999888632 12445566688889999999999999987 33222 234555566888899999999998
Q ss_pred hhh
Q 010961 493 YLM 495 (496)
Q Consensus 493 ~~~ 495 (496)
+++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0022 Score=56.50 Aligned_cols=136 Identities=17% Similarity=0.065 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH-HHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHH
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT-YSKRGMPSDACKLFSELK---VYDTILLNTMITVYS 381 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 381 (496)
+|..+++..-+.+..+.|+.+|.++.+.+ ..+..+|...... |...++.+.|.++|+... +.+...|...++-+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34555555555555666666666655332 2223333333333 222344444666666555 445555555566666
Q ss_pred hcCCHHHHHHHHhhCCC--C----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010961 382 SCGRIEDAKHIFRTMPN--K----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 444 (496)
..|+.+.|..+|++... + ....|...+..-.+.|+.+.+.++.+++.+. -|+...+..++.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 66666666666666554 1 2246777777777777777777777777664 333333333333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0011 Score=60.87 Aligned_cols=113 Identities=11% Similarity=0.139 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCC-C-----CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010961 240 CLSALISGYANCGKMNDARRVFDRTTD-T-----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313 (496)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 313 (496)
....+++.+....+++.+..++.+... | -+.+..++++.|...|..+.++.+++.=...|+-||..+++.|+..
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 334444444444445555554444332 1 1345678889999999999999999888888999999999999999
Q ss_pred HhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352 (496)
Q Consensus 314 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (496)
+.+.|++..|.++...|...+...++.++...+.++.+.
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999988888877666666666666555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0013 Score=49.64 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
+..+..++.+.|++++|.+.|+.+.... .+.......+..+..++...|+.+.|.+.++++.+.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3334444444455555555554444310 000001223333344444444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00079 Score=54.63 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=52.8
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CC----hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHH
Q 010961 39 STLPIANRLLQMYMRCGNPTDALLLFDEMPR--RN----CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNML 109 (496)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 109 (496)
.....+..+...+...|++++|...|++..+ ++ ...+..+..++.+.|++++|...+++..+ .+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 3333566677777777888888887777653 22 24566677777777777777777776655 234445555
Q ss_pred HHHHHhcCChhHH
Q 010961 110 ISGFAKAGELKTA 122 (496)
Q Consensus 110 ~~~~~~~~~~~~a 122 (496)
...+...|+...+
T Consensus 113 g~~~~~~g~~~~a 125 (172)
T PRK02603 113 AVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHcCChHhH
Confidence 5566555554433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00075 Score=48.26 Aligned_cols=90 Identities=13% Similarity=0.004 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 483 (496)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+... .+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 4455666777777888888777776652 33445666677777777778888877777766542 234566777777777
Q ss_pred cCChHHHHHhhh
Q 010961 484 CGFIKMDEYYLM 495 (496)
Q Consensus 484 ~g~~~~A~~~~~ 495 (496)
.|+.++|.+.++
T Consensus 81 ~~~~~~a~~~~~ 92 (100)
T cd00189 81 LGKYEEALEAYE 92 (100)
T ss_pred HHhHHHHHHHHH
Confidence 777777776654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00047 Score=48.10 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=8.0
Q ss_pred HHHHHHhcCChhhHHHHHH
Q 010961 345 LLDTYSKRGMPSDACKLFS 363 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~ 363 (496)
+..+|.+.|++++|..+++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3444444444444444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.003 Score=48.82 Aligned_cols=91 Identities=7% Similarity=-0.081 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 010961 340 IVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQ 413 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 413 (496)
...-.+...+...|++++|.++|+.+. +.+..-|-.|..++-..|++++|+..|..... .++.++-.+..++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 334445556678899999999998877 44566777888888889999999999988653 466788888899999
Q ss_pred CCChhhHHHHHHHHHhC
Q 010961 414 NGSPIEALDLFCNMNKL 430 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~ 430 (496)
.|+.+.|.+.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999998877653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0049 Score=51.26 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHH-----H
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-----L 345 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 345 (496)
..+.++..+...|.+.-.+..+++.++...+.++.....+.+.-.+.|+.+.|...|++..+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44556666777778888888888888776666777777777777888888888888887766433333322222 2
Q ss_pred HHHHHhcCChhhHHHHHHhcc
Q 010961 346 LDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~ 366 (496)
...|.-.+++..|...+.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred hhheecccchHHHHHHHhhcc
Confidence 233444455555555555444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.067 Score=48.56 Aligned_cols=129 Identities=12% Similarity=0.200 Sum_probs=82.0
Q ss_pred hccCccchhhhhhHHHHHhccCCCch-----HHHHHHHHHHHhcCChHHHHHHhhhCCC-CChhhHHHHHHHHH--hcCC
Q 010961 16 NTHHSIHVGKQLHLHFLKKGILNSTL-----PIANRLLQMYMRCGNPTDALLLFDEMPR-RNCFSWNAMIEGFM--KLGH 87 (496)
Q Consensus 16 ~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~--~~~~ 87 (496)
.+++++.++..+|..+.+..- .+++ -..+.++++|.- .+.+.....+....+ -....|-.+..++. +.+.
T Consensus 17 qkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 357899999999998886532 2222 023456666643 445555544444443 12445666665543 7788
Q ss_pred HHHHHHHHhhCCC------------------CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--------CCcccHHHHH
Q 010961 88 KEKSLQLFNVMPQ------------------KNDFSWNMLISGFAKAGELKTARTLFNDMPR--------RNAIAWNSMI 141 (496)
Q Consensus 88 ~~~a~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li 141 (496)
+++|++.+..... +|..-=+..+.++...|++.++..+++++.+ -+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 9999988765543 1112225667888899999999999988863 3777888865
Q ss_pred HHHHH
Q 010961 142 HCYVR 146 (496)
Q Consensus 142 ~~~~~ 146 (496)
-.+.+
T Consensus 175 lmlsr 179 (549)
T PF07079_consen 175 LMLSR 179 (549)
T ss_pred HHHhH
Confidence 55544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0016 Score=49.12 Aligned_cols=97 Identities=11% Similarity=-0.012 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCC--CCCHHHHHHH
Q 010961 371 ILLNTMITVYSSCGRIEDAKHIFRTMPN--KS----LISWNSMIVGLSQNGSPIEALDLFCNMNKLDL--RMDKFSLASV 442 (496)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~l 442 (496)
.++..++..+.+.|++++|.+.|+.+.+ |+ ...+..+...+.+.|+++.|...++.+....- +.....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3566777888899999999999988864 33 24566788899999999999999999887521 1124567778
Q ss_pred HHHHhccCchhhHHHHHHHHHHcCC
Q 010961 443 ISACANISSLELGEQVFARVTIIGL 467 (496)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~~~~~~~ 467 (496)
..++...|+++.|...++.+.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 8888899999999999999888653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0015 Score=52.93 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=75.3
Q ss_pred HHHHhc--CCCCcchHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 010961 259 RVFDRT--TDTSSVMWNSMISGYIS-----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL-------------- 317 (496)
Q Consensus 259 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-------------- 317 (496)
..|++. ...+-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++.+-+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344443 33456667777766654 477788888899999999999999999999987652
Q ss_pred --cchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 318 --GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 318 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
.+-+-|..++++|...|+-||..++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2347789999999999999999999999999976654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0053 Score=49.80 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED--ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
.+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 455555566666666666666666655322221 2345555556666666666666666666543 2234444455555
Q ss_pred HHhcCCh
Q 010961 349 YSKRGMP 355 (496)
Q Consensus 349 ~~~~~~~ 355 (496)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5555553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0057 Score=53.91 Aligned_cols=125 Identities=9% Similarity=0.067 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh-cCChhhHHHHHHhcCC---CChHHHHHHHHHH
Q 010961 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK-CGDFNSANQVLNMMKE---PDDFCLSALISGY 248 (496)
Q Consensus 173 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 248 (496)
.+|..+++..-+.+..+.|..+|.+..+.+. .+..+|......-.. .++.+.|.++|+...+ .+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3566666777777777777777777764332 233444443333222 4556667777777664 4556677777777
Q ss_pred HhcCChhHHHHHHHhcCCC--C----cchHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010961 249 ANCGKMNDARRVFDRTTDT--S----SVMWNSMISGYISNNEDTEALLLFHKMRRN 298 (496)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 298 (496)
...++.+.|..+|++.... . ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777766551 1 236777777767777777777777777763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0014 Score=52.92 Aligned_cols=57 Identities=16% Similarity=0.021 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC--CC----hhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR--RN----CFSWNAMIEGFMKLGHKEKSLQLFNVMP 99 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 99 (496)
.+..+...+...|++++|+..|++... ++ ..+|..+..++...|++++|+..+++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444555555555555555554431 11 1234444455555555555555554443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.071 Score=45.81 Aligned_cols=54 Identities=11% Similarity=0.069 Sum_probs=27.2
Q ss_pred HHHHHhCCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 408 IVGLSQNGSPIEALDLFCNMNKL--DLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 408 ~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455556666666655555553 1111233444555555555555555554443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0018 Score=59.21 Aligned_cols=95 Identities=13% Similarity=-0.022 Sum_probs=55.5
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHH
Q 010961 80 EGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREA 153 (496)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a 153 (496)
..+...|++++|++.|+++.+ .+...|..+..++.+.|++++|+..++++.. | +...|..+..+|...|++++|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 334455666666666666554 2344555555666666666666666666543 2 344566666667777777777
Q ss_pred HHHHHHHHHchhccCCcCHHHHHHHH
Q 010961 154 VRLFKELNSDLVERLQCDAFILATVI 179 (496)
Q Consensus 154 ~~~~~~~~~~~~~~~~p~~~~~~~ll 179 (496)
+..|++..+ ..|+.......+
T Consensus 90 ~~~~~~al~-----l~P~~~~~~~~l 110 (356)
T PLN03088 90 KAALEKGAS-----LAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHH-----hCCCCHHHHHHH
Confidence 777777666 445444443333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.014 Score=43.47 Aligned_cols=106 Identities=16% Similarity=0.097 Sum_probs=66.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC--chHHHHHHHHHHHH
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVLED--ASTLASVLSACSSLGFLEHGKQVHGHACKVGVI--DDVIVASALLDTYS 350 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 350 (496)
...++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34566677888888888888888776554 334555666777888888888888877764211 12222333444666
Q ss_pred hcCChhhHHHHHHhcccCchhhHHHHHHHH
Q 010961 351 KRGMPSDACKLFSELKVYDTILLNTMITVY 380 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 380 (496)
..|+.++|++.+-....++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888887777655444433444433333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.055 Score=51.23 Aligned_cols=203 Identities=11% Similarity=0.075 Sum_probs=98.4
Q ss_pred HHHHHHHHccchHH--HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC--hHHHHH-----HHH
Q 010961 176 ATVIGACADLAALE--YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD--DFCLSA-----LIS 246 (496)
Q Consensus 176 ~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~-----l~~ 246 (496)
+..-.+|.+..+.. +..--++++++.|-.|+... +...++-.|.+.+|-++|.+--..+ ...|+- ...
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQ 678 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQ 678 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHH
Confidence 33334444444433 33334556677777666543 3344555677777777776654322 111111 122
Q ss_pred HHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHH------HHHHCCC---CCCHHHHHHHHHHHh
Q 010961 247 GYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFH------KMRRNGV---LEDASTLASVLSACS 315 (496)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~------~m~~~g~---~~~~~~~~~l~~~~~ 315 (496)
-+...|..++-..+.++--+ .+..--.+....+...|+.++|..+.- .+.+.+- ..+..+...+...+.
T Consensus 679 E~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk 758 (1081)
T KOG1538|consen 679 EFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLK 758 (1081)
T ss_pred HHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHh
Confidence 23333333333333321110 111111223344556677777665431 1122222 223344444455555
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 390 (496)
+...+..|-++|..|-+. ..+++.....++|++|..+-++..+--+..|-...+-++...++++|.
T Consensus 759 ~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 759 KLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred hccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHH
Confidence 666777777777766432 346677777888888888887766433333333333344444444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0015 Score=55.42 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=76.3
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCC---cccHHHHHHHHHHcCCHHHHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPRRN---AIAWNSMIHCYVRNGFAREAV 154 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~ 154 (496)
-+.+.+++.+|+..|.+..+ .|..-|..-..+|.+.|.++.|++-.+....-| ..+|..|..+|...|++++|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 45677889999999888876 456777888888999999998888888777644 347888888999999999999
Q ss_pred HHHHHHHHchhccCCcCHHHHHHHHHH
Q 010961 155 RLFKELNSDLVERLQCDAFILATVIGA 181 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~p~~~~~~~ll~~ 181 (496)
+.|++... +.|+..+|..-++.
T Consensus 170 ~aykKaLe-----ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 170 EAYKKALE-----LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHhhhc-----cCCCcHHHHHHHHH
Confidence 99888877 88887776655544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0031 Score=55.86 Aligned_cols=123 Identities=15% Similarity=0.047 Sum_probs=85.1
Q ss_pred HHHHHHHHHccchHHHHHHHHHHHH----HcCCCc-chhHHHHHHHHHHhcCChhhHHHHHHhcC-------C--CChHH
Q 010961 175 LATVIGACADLAALEYGKQIHSHIL----VNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMK-------E--PDDFC 240 (496)
Q Consensus 175 ~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~--~~~~~ 240 (496)
|..|-..|.-.|+++.+....+.-+ +.|-.. ....+..+.+++.-.|+++.|.+.|+... + ....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444444555678888877665433 333222 23467788888999999999998887643 1 23445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCC---------CCcchHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010961 241 LSALISGYANCGKMNDARRVFDRTTD---------TSSVMWNSMISGYISNNEDTEALLLFHKMRR 297 (496)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 297 (496)
..++.+.|.-...+++|+.++.+... ....++-.+..+|...|..++|+.+.+.-.+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66778888888889999988876443 1245777888999999999998887665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0086 Score=48.37 Aligned_cols=63 Identities=16% Similarity=-0.044 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcccchhhHHHHHHHHHHc
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLE--DASTLASVLSACSSLGFLEHGKQVHGHACKV 333 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 333 (496)
.|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...+....+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445555555566666666666555432111 1234555555555666666666666655543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0038 Score=55.34 Aligned_cols=126 Identities=10% Similarity=0.029 Sum_probs=72.2
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHhcccchhhHHHHHHHHH----HcCC-CchH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKM----RRNGVL-EDASTLASVLSACSSLGFLEHGKQVHGHAC----KVGV-IDDV 339 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~ 339 (496)
.+|..+.+.|.-.|+++.|+..-+.= ++-|-+ .....+..+.+++.-.|+++.|.+.|+... +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666666666677777776543321 222222 223455566666777777777777776543 2221 1233
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhcc---------cCchhhHHHHHHHHHhcCCHHHHHHHHhh
Q 010961 340 IVASALLDTYSKRGMPSDACKLFSELK---------VYDTILLNTMITVYSSCGRIEDAKHIFRT 395 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (496)
.+.-+|...|.-..++++|+.++.+-. .-....+-+|..+|...|..++|+.+.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 444556666766677777777665433 11234566677777777777777665544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.004 Score=57.04 Aligned_cols=85 Identities=8% Similarity=-0.115 Sum_probs=49.2
Q ss_pred HHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhh
Q 010961 346 LDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIE 419 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~ 419 (496)
...+...|++++|++.|++.. +.+...|..+..+|...|++++|+..++++.+ | +...|..+..+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344555667777777666665 33444555555566666666666666665543 2 33455555566666666666
Q ss_pred HHHHHHHHHhC
Q 010961 420 ALDLFCNMNKL 430 (496)
Q Consensus 420 a~~~~~~m~~~ 430 (496)
|...|++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666665553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.017 Score=54.50 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHh
Q 010961 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250 (496)
Q Consensus 171 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 250 (496)
+..+...+...+.+...+..|-++|..|-. ...++..+...++|++|..+-+..++--...|-...+-++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 334555555555666667777777776643 23567777788888888888888776333334444444444
Q ss_pred cCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010961 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298 (496)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 298 (496)
..++++|.+ +|.+.|+..+|.++++++...
T Consensus 817 ~DrFeEAqk------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQK------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHH------------------HHHHhcchHHHHHHHHHhhhh
Confidence 445544433 344566666666666665543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.068 Score=42.29 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=40.3
Q ss_pred CCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 168 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
+.|+...-..|..+....|+..+|...|++...--..-|......+.++....+++..|...++.+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 44555555555666666666666666666655433444555555666666666666666666666553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0031 Score=53.69 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=60.0
Q ss_pred HHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCch---hhHHHHHHHHHhcCCHHHH
Q 010961 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT---ILLNTMITVYSSCGRIEDA 389 (496)
Q Consensus 313 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a 389 (496)
-+.+.+++++|...|.++++.. +.|+..|..-..+|++.|.++.|++-.+.....|+ .+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3556677777777777777753 44556666667777777777777776666664333 3566677777777777777
Q ss_pred HHHHhhCCC--CChhhH
Q 010961 390 KHIFRTMPN--KSLISW 404 (496)
Q Consensus 390 ~~~~~~~~~--~~~~~~ 404 (496)
++.|++..+ |+-.+|
T Consensus 169 ~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHhhhccCCCcHHH
Confidence 777777664 444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.27 Score=47.68 Aligned_cols=107 Identities=16% Similarity=0.098 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCC
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (496)
+.+-.+.-+...|+..+|.++-.+.. .||...|-.-+.+++..++|++-+++-+...+ +.-|...+.+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHHHHHhccc
Confidence 33444444455555555555544332 34555555555566666666555555444332 4445555555666666
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHH
Q 010961 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423 (496)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 423 (496)
.++|.+.+-+...-. -.+.+|.+.|++.+|.+.
T Consensus 760 ~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 760 KDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHH
Confidence 666655555443311 234455555555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.01 Score=44.21 Aligned_cols=100 Identities=20% Similarity=0.126 Sum_probs=59.4
Q ss_pred HHHHHhcccchhhHHHHHHHHHHcCCCch--HHHHHHHHHHHHhcCChhhHHHHHHhcc--cCc----hhhHHHHHHHHH
Q 010961 310 VLSACSSLGFLEHGKQVHGHACKVGVIDD--VIVASALLDTYSKRGMPSDACKLFSELK--VYD----TILLNTMITVYS 381 (496)
Q Consensus 310 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~----~~~~~~l~~~~~ 381 (496)
+..++-..|+.++|..+|+.....|.... ...+-.+...+...|++++|..++++.. .|+ ......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34456678899999999999988876554 3345566777788888888888887665 122 112222233444
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHH
Q 010961 382 SCGRIEDAKHIFRTMPNKSLISWNSMIV 409 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 409 (496)
..|+.++|...+-....++...|.--|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544433333333333333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.083 Score=41.81 Aligned_cols=66 Identities=12% Similarity=-0.021 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
-|+...-..|..++...|+..+|...|.+...--+..|..+.-.+.++....+++..|...++++.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 455555555556666666666666666666554445556666666666666666666666665544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.31 Score=47.33 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=83.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
+.+--+.-+...|+-.+|.++-.+..-|+-..|-.-+.+++..+++++-.++-+.++ .+.-|.-++.+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 455666777888999999999999888888888888889999999887776665544 24457778888999999
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHh
Q 010961 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (496)
.++|.+++-+.-. . + -...+|.++|++.+|.+.
T Consensus 760 ~~EA~KYiprv~~--l---~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 760 KDEAKKYIPRVGG--L---Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHhhhhhccCC--h---H----HHHHHHHHhccHHHHHHH
Confidence 9999988766421 1 1 467889999999988775
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.2 Score=45.03 Aligned_cols=88 Identities=10% Similarity=-0.029 Sum_probs=42.4
Q ss_pred HHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 278 GYISNNEDTEALLLFHKMRRN---GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
-..+.|++..|.+.|.+.+.. .+.|+...|........+.|+..+|..--+...+.. ..-...+..-..++...++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHH
Confidence 344666677777777666543 233444445555555556666666665555544421 0001112222233334455
Q ss_pred hhhHHHHHHhcc
Q 010961 355 PSDACKLFSELK 366 (496)
Q Consensus 355 ~~~a~~~~~~~~ 366 (496)
|++|.+-|+...
T Consensus 337 ~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 337 WEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0018 Score=42.92 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=32.3
Q ss_pred ccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC
Q 010961 17 THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69 (496)
Q Consensus 17 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (496)
..|++++|..+++.+.+.. |+..++...+..+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566677777777776665 33443566677777777777777777776654
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.22 Score=44.43 Aligned_cols=300 Identities=12% Similarity=0.009 Sum_probs=182.7
Q ss_pred ccchhhhhhHHHHHhccCCCchHHHHHHHHHHHh--cCChHHHHHHhhhCC---CCChhhHHHHHHH--HHhcCCHHHHH
Q 010961 20 SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR--CGNPTDALLLFDEMP---RRNCFSWNAMIEG--FMKLGHKEKSL 92 (496)
Q Consensus 20 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~a~ 92 (496)
.+..+.++|..-.+.. .|..|-.++.- .|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHH
Confidence 3556666666655543 45555555543 577778877766544 3566655555544 34569999999
Q ss_pred HHHhhCCC-CChhh--HHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhc
Q 010961 93 QLFNVMPQ-KNDFS--WNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166 (496)
Q Consensus 93 ~~~~~~~~-~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 166 (496)
+-|+.|.. |.... ...|.-.--+.|..+.|..+-++... | -...+...+...+..|+|+.|+++++.-+.. .
T Consensus 141 ~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~--~ 218 (531)
T COG3898 141 KKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA--K 218 (531)
T ss_pred HHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH--H
Confidence 99999987 33321 11222223467888888888777654 3 3567889999999999999999999887764 3
Q ss_pred cCCcCHHH--HHHHHHH--HHc-cchHHHHHHHHHHHHHcCCCcchh-HHHHHHHHHHhcCChhhHHHHHHhcCC--CCh
Q 010961 167 RLQCDAFI--LATVIGA--CAD-LAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKE--PDD 238 (496)
Q Consensus 167 ~~~p~~~~--~~~ll~~--~~~-~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~ 238 (496)
-+.++..- -..|+.+ ... ..+...+...-.+..+. .|+.. .-..-...+.+.|+..++-.+++.+-+ |.+
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 34555432 2222222 111 12445555555555443 33332 223345678888999999888888765 443
Q ss_pred HHHHHHHHHHHhcCChhHH----HHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010961 239 FCLSALISGYANCGKMNDA----RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314 (496)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 314 (496)
..+. +..+.+.|+.-.. .+-++.|...+..+.-.+..+....|++..|..--+.... ..|....|..+...-
T Consensus 297 ~ia~--lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIe 372 (531)
T COG3898 297 DIAL--LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIE 372 (531)
T ss_pred HHHH--HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHH
Confidence 3333 3334455543211 1234455556666666777777777777777665555544 366677776666653
Q ss_pred h-cccchhhHHHHHHHHHHcC
Q 010961 315 S-SLGFLEHGKQVHGHACKVG 334 (496)
Q Consensus 315 ~-~~~~~~~a~~~~~~~~~~~ 334 (496)
. ..|+-.++.+.+.+..+..
T Consensus 373 eAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 373 EAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hhccCchHHHHHHHHHHhcCC
Confidence 3 4477777777777776653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0034 Score=41.76 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=42.8
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-chhhHHHHHHHHHH
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS-SLELGEQVFARVTI 464 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 464 (496)
+..+|..+...+...|++++|+..|++..+.. +-+...|..+..++...| ++++|.+.++..++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566667777777777777777777776652 335556666777777777 57777777776655
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.033 Score=53.52 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=49.0
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
+...|..+.......|++++|...+++..+. .|+...|..+...+...|+.++|...+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456666666666678888888888888876 4677788888888888888888888888776643
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0051 Score=40.74 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 010961 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 186 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
|+++.|.++++.+.+..+. +..+...+..+|.+.|++++|..+++.+.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444443322 33344445555555555555555555544
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0046 Score=40.51 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=41.6
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 407 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
+...+...|++++|.+.|++..+.. +-+...+..+..++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556777788888888888887764 335667777777778888888888888877664
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.3 Score=44.48 Aligned_cols=135 Identities=19% Similarity=0.140 Sum_probs=97.8
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHH
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYS 381 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 381 (496)
.|...++.-.+..-++.|+.+|-++.+.| +.+++.++++++..++ .|+..-|..+|+--. +.++....-.+.-+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34456666667778899999999999888 5678888898888765 577788888888655 334444456677778
Q ss_pred hcCCHHHHHHHHhhCCC---CC--hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 382 SCGRIEDAKHIFRTMPN---KS--LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
..++-+.|..+|+.... .+ -..|..+|.--..-|+...+..+=++|.+. -|...+-....
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~ 542 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFT 542 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHH
Confidence 88999999999986554 22 357888888888888888888888887764 44433333333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.074 Score=39.41 Aligned_cols=134 Identities=14% Similarity=0.173 Sum_probs=75.3
Q ss_pred cchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC-CChH---HHHHHHHHHHhcCChhHHHHH
Q 010961 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDF---CLSALISGYANCGKMNDARRV 260 (496)
Q Consensus 185 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~---~~~~l~~~~~~~~~~~~a~~~ 260 (496)
.|..++..++..+...+. +..-+|-++.-....-+-+-..++++.+-+ -|.. -...++.+|...|..
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~------ 85 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKL------ 85 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--------
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcch------
Confidence 455556666665555443 333444444444444444445555554443 1111 123344444444433
Q ss_pred HHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC
Q 010961 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336 (496)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 336 (496)
.......+.....+|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++.+.|++
T Consensus 86 --------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 --------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred --------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344556677888889999988888888764 3778888888899999999999999999999988854
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.031 Score=53.74 Aligned_cols=139 Identities=12% Similarity=0.031 Sum_probs=88.7
Q ss_pred CCCCCHHHHHHHHHHHhc-----ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC--------ChhhHHHHHHhc
Q 010961 299 GVLEDASTLASVLSACSS-----LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG--------MPSDACKLFSEL 365 (496)
Q Consensus 299 g~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 365 (496)
+.+.+...|...+++... .++.+.|..+|+++.+.. +.....+..+..++.... +...+.+...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345566777777766432 233667777777777753 222333333333332211 122333333332
Q ss_pred c-----cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHH
Q 010961 366 K-----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438 (496)
Q Consensus 366 ~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 438 (496)
. +.++..|..+.-.....|++++|...+++... |+...|..+...+...|++++|.+.+++.... .|...|
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCch
Confidence 1 33456677776667778999999999998875 77788999999999999999999999998875 565445
Q ss_pred HH
Q 010961 439 LA 440 (496)
Q Consensus 439 ~~ 440 (496)
|.
T Consensus 489 ~~ 490 (517)
T PRK10153 489 LY 490 (517)
T ss_pred HH
Confidence 43
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.14 Score=42.98 Aligned_cols=134 Identities=11% Similarity=0.039 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC----CChHHHH-----H
Q 010961 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLS-----A 243 (496)
Q Consensus 173 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~-----~ 243 (496)
...+.+++.+...|.+.-....+.+..+...+.++.....|++.-.+.||.+.|...|+...+ -|..+.+ .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 355667777777788888888888888877677777778888888888888888888886553 2222222 2
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCC---CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010961 244 LISGYANCGKMNDARRVFDRTTDT---SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308 (496)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 308 (496)
....|.-.+++..|...+.+.+.. ++..-|.-.-+..-.|+..+|++.++.|.+. .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 334456667777888888776653 3455555555566678899999999999885 44443333
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.085 Score=44.07 Aligned_cols=61 Identities=13% Similarity=-0.035 Sum_probs=31.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
....+...|++.+|++.|+.+... .+..| -......++.++.+.|+++.|...++..++.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344555666666666666666653 11111 12334444556666666666666666665543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.68 Score=47.66 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHHhhCCCCChhh---HHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 382 SCGRIEDAKHIFRTMPNKSLIS---WNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
.+|++++|..+..++..+-... -..|+.-+...+++-+|-++..+...
T Consensus 977 ~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 4566666666666665432222 24555666666666666666665543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.18 Score=42.17 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=23.0
Q ss_pred HHHHhccCchhhHHHHHHHHHHcC--CCchHHHHHHHHHHHHhcCChHHH
Q 010961 443 ISACANISSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKCGFIKMD 490 (496)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 490 (496)
..-|.+.|.+..|..-++.+++.= .+........++.+|.+.|..+.|
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344555666666666666555431 111223444555666666655543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.011 Score=39.14 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=35.7
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccc-hHHHHHHHHHHHHH
Q 010961 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLA-ALEYGKQIHSHILV 200 (496)
Q Consensus 134 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 200 (496)
+..|..+...+...|++++|+..|++..+ ..| +...+..+..++...| ++++|.+.++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~-----~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE-----LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH-----HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34555666666666666666666666665 233 3344555555555555 56666666655554
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.017 Score=45.30 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH-----HcCCCchHHHHH
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-----IIGLDSDQIIST 475 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~ 475 (496)
....++..+...|++++|..+.+++.... |-|...|..++.++...|+...|.++|+.+. +.|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44556677778888888888888888763 5577788888888888888888888888653 468888876644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.013 Score=38.34 Aligned_cols=54 Identities=9% Similarity=-0.040 Sum_probs=26.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 010961 142 HCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILV 200 (496)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (496)
..+.+.|++++|.+.|++..+ ..| +...+..+..++...|++++|...++.+++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~-----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALK-----QDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHC-----CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555555555554 223 333444444555555555555555555544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.16 Score=45.94 Aligned_cols=131 Identities=11% Similarity=0.088 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---------ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS---------LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352 (496)
Q Consensus 282 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (496)
.|+.++|++++..+......+++.+|..+.+.|-. ...+++|...|.+.-+.. |+...--.++..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHc
Confidence 77888888888876655567777777766655421 122445555555443322 2222222222222233
Q ss_pred CChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 353 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
|...+...-..++. ..++ ..+.+.|..+ ...+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 273 g~~~~~~~el~~i~----~~l~---~llg~kg~~~---------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 273 GHDFETSEELRKIG----VKLS---SLLGRKGSLE---------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CCcccchHHHHHHH----HHHH---HHHHhhcccc---------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 32211111111110 0011 1111111100 1145566778888888899999999999999876
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.2 Score=45.38 Aligned_cols=91 Identities=10% Similarity=0.013 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCCC---C----cccHHHHHHHHHH---cCCHHHHHHHHHHHHHchhccCCcCHHHH
Q 010961 106 WNMLISGFAKAGELKTARTLFNDMPRR---N----AIAWNSMIHCYVR---NGFAREAVRLFKELNSDLVERLQCDAFIL 175 (496)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~----~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~p~~~~~ 175 (496)
...++-+|....+++...++.+.+... + ...-....-++-+ .|+.++|++++..+.. ....+++.+|
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~---~~~~~~~d~~ 220 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE---SDENPDPDTL 220 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh---ccCCCChHHH
Confidence 334555677888888888888888763 1 1122234445556 7889999999888555 3466777788
Q ss_pred HHHHHHHHc---------cchHHHHHHHHHHHH
Q 010961 176 ATVIGACAD---------LAALEYGKQIHSHIL 199 (496)
Q Consensus 176 ~~ll~~~~~---------~~~~~~a~~~~~~~~ 199 (496)
..+.+.|-. ....++|...|.+.-
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF 253 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF 253 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 877776532 123455555555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.03 Score=48.54 Aligned_cols=86 Identities=13% Similarity=-0.026 Sum_probs=51.7
Q ss_pred HhcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhCCChhhHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCch
Q 010961 381 SSCGRIEDAKHIFRTMPN--KSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISSL 452 (496)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~ 452 (496)
.+.|++++|...|+.+.+ |+. ..+-.+...|...|++++|...|+.+.+.- -+.....+..+...+...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555543 322 355566777777777777777777776541 011233444455566677778
Q ss_pred hhHHHHHHHHHHcC
Q 010961 453 ELGEQVFARVTIIG 466 (496)
Q Consensus 453 ~~a~~~~~~~~~~~ 466 (496)
++|..+++.+++..
T Consensus 234 ~~A~~~~~~vi~~y 247 (263)
T PRK10803 234 AKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHC
Confidence 88888777776643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.63 Score=42.52 Aligned_cols=118 Identities=13% Similarity=0.125 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH-HHHHHHH
Q 010961 370 TILLNTMITVYSSCGRIEDAKHIFRTMPN-----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK-FSLASVI 443 (496)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~ 443 (496)
...|...++.-.+...++.|..+|-+..+ +++..+++++..++. |++..|..+|+--... -||. .--.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 34566777777788888888888887765 566778888876664 6777888888875554 3443 3334455
Q ss_pred HHHhccCchhhHHHHHHHHHHcCCCch--HHHHHHHHHHHHhcCChHHHH
Q 010961 444 SACANISSLELGEQVFARVTIIGLDSD--QIISTSLVDFYCKCGFIKMDE 491 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 491 (496)
.-+.+.++-+.|..+|+..+.. +.-+ ..+|..+++-=..-|+++.|.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~ 522 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVY 522 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHH
Confidence 6667778888888888854432 1112 467777777777777775554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.087 Score=45.37 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=55.2
Q ss_pred CchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcC---CHHHHHHHHhhCCC---CChhhHHH
Q 010961 336 IDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCG---RIEDAKHIFRTMPN---KSLISWNS 406 (496)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~---~~~~~~~~ 406 (496)
+.|..-|-.|..+|...|+.+.|..-|.+.. ++++..+..+..++.... ...++..+|+++.. .|+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4456666666666666666666666666554 445555555555443322 23445556655553 23445555
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhC
Q 010961 407 MIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 407 l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 566666667777777777776665
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.83 Score=45.19 Aligned_cols=49 Identities=22% Similarity=0.227 Sum_probs=34.4
Q ss_pred HHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHH
Q 010961 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392 (496)
Q Consensus 344 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 392 (496)
-++..+....+++.+..+.+...+.++..|..+++.+++.+..+.-.+.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~ 758 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEI 758 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHH
Confidence 3555666777777777777777777788888888888877765544433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.62 Score=41.76 Aligned_cols=284 Identities=13% Similarity=0.062 Sum_probs=184.9
Q ss_pred HHHHHhhhhc--cCccchhhhhhHHHHHhccCCCchHHHHHHHH--HHHhcCChHHHHHHhhhCCC-CChh--hHHHHHH
Q 010961 8 LARLLQSCNT--HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQ--MYMRCGNPTDALLLFDEMPR-RNCF--SWNAMIE 80 (496)
Q Consensus 8 ~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~l~~ 80 (496)
|..|-.++.. .|+-..|.++-.+..+.- ..+.. .+..|+. .-.-.|++++|.+-|+.|.. |... -...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~ll-ssDqe-pLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLL-SSDQE-PLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhh-hccch-HHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 4444444443 567777777766655432 12222 3333443 33456999999999999986 3222 2233333
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChhHHHHHHhhcCC-----CCccc--HHHHHHHHH---Hc
Q 010961 81 GFMKLGHKEKSLQLFNVMPQ--KN-DFSWNMLISGFAKAGELKTARTLFNDMPR-----RNAIA--WNSMIHCYV---RN 147 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~--~~~li~~~~---~~ 147 (496)
.--+.|+.+.|...-+..-. |. ...+...+...+..|+++.|+++++.-.. ++..- -..|+.+-. -.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 34477999999998887765 32 45678888999999999999999987653 33321 222332221 12
Q ss_pred CCHHHHHHHHHHHHHchhccCCcCHHHHH-HHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhH
Q 010961 148 GFAREAVRLFKELNSDLVERLQCDAFILA-TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226 (496)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (496)
.+...|.+.-.+..+ ..||-..-. ...+++.+.|+..++-.+++.+-+..++|+. ..+..+.+.|+....
T Consensus 243 adp~~Ar~~A~~a~K-----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdta~d 313 (531)
T COG3898 243 ADPASARDDALEANK-----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGDTALD 313 (531)
T ss_pred CChHHHHHHHHHHhh-----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCcHHH
Confidence 356666666666655 667654433 3347889999999999999999998887764 233445566654322
Q ss_pred ----HHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHH-hCCCHHHHHHHHHHHHHCC
Q 010961 227 ----NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYI-SNNEDTEALLLFHKMRRNG 299 (496)
Q Consensus 227 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~g 299 (496)
.+-++.|+..+..+.-.+..+-...|++..|..--+.... |....|..|...-. ..|+-.++...+.+..+.-
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 1335556667778888888899999999888776665544 55566766666544 4499999999988887754
Q ss_pred CCC
Q 010961 300 VLE 302 (496)
Q Consensus 300 ~~~ 302 (496)
-.|
T Consensus 394 rdP 396 (531)
T COG3898 394 RDP 396 (531)
T ss_pred CCC
Confidence 334
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.016 Score=38.90 Aligned_cols=57 Identities=16% Similarity=0.017 Sum_probs=45.2
Q ss_pred HHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 409 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
..|.+.+++++|.++++++...+ |.++..+.....++...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 46778888888888888888863 4466777778888888888888888888887754
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.44 E-value=1.1 Score=44.42 Aligned_cols=176 Identities=14% Similarity=0.079 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHH
Q 010961 106 WNMLISGFAKAGELKTARTLFNDMPRRNA---IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182 (496)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 182 (496)
...-+..+.+..-++-|..+-+.-..+.. .......+.+.+.|++++|...|-+-... +.|. .++.-+
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~----le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF----LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc----CChH-----HHHHHh
Confidence 34455556666666666666554433211 12333445566778888888877666542 4443 345556
Q ss_pred HccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChH-HHHHHHHHHHhcCChhHHHHHH
Q 010961 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF-CLSALISGYANCGKMNDARRVF 261 (496)
Q Consensus 183 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 261 (496)
.........-.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+...+.... -....+..+.+.+-.++|..+-
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 6667777777888888888876 5555678888888888888888888776632111 2344555555555555555554
Q ss_pred HhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
.+... .......+ +-..+++++|++++..+
T Consensus 487 ~k~~~-he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK-HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 44333 22222222 23456666766666543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.045 Score=47.43 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCC--CCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHH
Q 010961 106 WNMLISGFAKAGELKTARTLFNDMPR--RNA----IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATV 178 (496)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l 178 (496)
|......+.+.|++++|...|+.+.+ |+. .++..+..+|...|++++|...|+.+.+. .+..| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHH
Confidence 33333333445666666666665553 322 34555556666666666666666666542 01111 12233333
Q ss_pred HHHHHccchHHHHHHHHHHHHHc
Q 010961 179 IGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
..++...|+.+.|..+++.+++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444555555555555555543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.71 Score=41.74 Aligned_cols=257 Identities=12% Similarity=-0.011 Sum_probs=121.7
Q ss_pred hhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHH
Q 010961 13 QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKE 89 (496)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 89 (496)
..+-....+..|...+...++..+.. .+.|..-+..+...|++++|.--.+.-.+ .....+...-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~--a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDN--ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccc--hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 34445566777777777777776443 22455455556666666666544433322 11112222233333333333
Q ss_pred HHHHHHh---------------hCCC-----CChhhHHHH-HHHHHhcCChhHHHHHHhhcCCCCc-ccHHHHHH--HHH
Q 010961 90 KSLQLFN---------------VMPQ-----KNDFSWNML-ISGFAKAGELKTARTLFNDMPRRNA-IAWNSMIH--CYV 145 (496)
Q Consensus 90 ~a~~~~~---------------~~~~-----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~--~~~ 145 (496)
+|.+.++ .... |.-.+|..+ ..++...|+.++|...--.+.+-|. ..+..+++ ++.
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y 214 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY 214 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc
Confidence 3333322 1111 111222222 2344556666666665555544322 22333332 333
Q ss_pred HcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhh
Q 010961 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225 (496)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (496)
-.++.+.|+..|++..+ ..|+...-..+-. ..+.++.+... .+-..+.|.+..
T Consensus 215 y~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~----------~~k~le~~k~~------------gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALR-----LDPDHQKSKSASM----------MPKKLEVKKER------------GNDAFKNGNYRK 267 (486)
T ss_pred cccchHHHHHHHhhhhc-----cChhhhhHHhHhh----------hHHHHHHHHhh------------hhhHhhccchhH
Confidence 45667777777776665 4454433222111 11111111111 122345566666
Q ss_pred HHHHHHhcCC-------CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcc---hHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 226 ANQVLNMMKE-------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV---MWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 226 a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
|.+.|.+... ++...|........+.|+..+|+.-.+.....|+. .|..-..++...++|++|.+-|+..
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666553 22333444444455666666666666666555443 2222234555667777777777766
Q ss_pred HHC
Q 010961 296 RRN 298 (496)
Q Consensus 296 ~~~ 298 (496)
.+.
T Consensus 348 ~q~ 350 (486)
T KOG0550|consen 348 MQL 350 (486)
T ss_pred Hhh
Confidence 554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.039 Score=46.67 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=60.0
Q ss_pred CChhhHHHHHHHHHh-----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----------------chhhHHH
Q 010961 399 KSLISWNSMIVGLSQ-----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS----------------SLELGEQ 457 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----------------~~~~a~~ 457 (496)
.+-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+.. .-+-+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 455556555555543 2445555666777777788778888887777764422 2345677
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 458 VFARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
+++.|..+|+.||..+-..|+.++.+.|-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 88888888888888888888888877664
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.26 Score=46.42 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=99.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 010961 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356 (496)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (496)
....-.++++.+.+....-.-..-.| ......+++.+.+.|..+.|.++..+ + ..-.....++|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHH
Confidence 44556788888777664111110012 44467777777888888888876543 2 12345566788888
Q ss_pred hHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH
Q 010961 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436 (496)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 436 (496)
.|.++.++.. ++..|..|.......|+++-|++.|++..+ |..|.-.|...|+.+.-.++.+.....|
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~----- 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG----- 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc-----
Confidence 8888877654 566888888888888888888888888764 5567777788888887777777777665
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHH
Q 010961 437 FSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
-++....++.-.|+.++..+++..
T Consensus 404 -~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 -DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp --HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 244445555566787777766544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.068 Score=45.99 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=68.7
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHH---ccchHHHHHHHHHHHHHcCCCcchhH
Q 010961 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA---DLAALEYGKQIHSHILVNGLDFDSVL 209 (496)
Q Consensus 133 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~ 209 (496)
|...|-.|...|...|+.+.|..-|....+. .| ++...+..+..++. ......++..+++++++.... +...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 6778888888888888888888888888774 22 33344444444443 233456777888888776544 6666
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 210 GSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
...|...+...|++.+|...|+.|.+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 66777777888888888888888775
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.24 Score=38.49 Aligned_cols=128 Identities=13% Similarity=0.192 Sum_probs=75.8
Q ss_pred hhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhc
Q 010961 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85 (496)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (496)
.....++..+...+.+.....+++.+.+.+. .++. .++.++..|++.+ ..+.+..++. ..+......+++.|.+.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~-~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPA-LQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchh-HHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHc
Confidence 3455667777777778888888888887763 3333 7888888887653 3444455542 23444555567777777
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhc-CChhHHHHHHhhcCCCCcccHHHHHHHHH
Q 010961 86 GHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-GELKTARTLFNDMPRRNAIAWNSMIHCYV 145 (496)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 145 (496)
+-++++.-++.++... ...+..+... ++++.|.+++.+-. +...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~~-----~~Al~~~l~~~~d~~~a~~~~~~~~--~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGNF-----KDAIVTLIEHLGNYEKAIEYFVKQN--NPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcCH-----HHHHHHHHHcccCHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 7777777777665431 1122222223 56666666666532 3445555555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.051 Score=42.40 Aligned_cols=90 Identities=14% Similarity=0.023 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 375 TMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
....-+...|++++|..+|+-+.- -+..-|..|..++-..+++++|+..|...-..+ .-|+..+-....++...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 344456688999999999987653 355567777788888899999999998877654 3456666677788889999
Q ss_pred hhhHHHHHHHHHHc
Q 010961 452 LELGEQVFARVTII 465 (496)
Q Consensus 452 ~~~a~~~~~~~~~~ 465 (496)
.+.|...|+..++.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988773
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.35 Score=45.57 Aligned_cols=134 Identities=13% Similarity=0.064 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHH
Q 010961 73 FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152 (496)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 152 (496)
...+.++.-+-+.|.++.|+++... + ..-.....+.|+++.|.++.+... +...|..|.+...+.|+++-
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHH
Confidence 3355566666666666666665432 1 223344455666666666655554 34466666666666666666
Q ss_pred HHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (496)
|.+.|++... +..|+-.+...|+.+...++.+.....|- ++....++...|+.++..+++.+
T Consensus 366 Ae~c~~k~~d------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 366 AEECYQKAKD------------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHCT-------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHhhcC------------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666544 44455555556666666666655555442 23333444445666666555554
Q ss_pred cC
Q 010961 233 MK 234 (496)
Q Consensus 233 ~~ 234 (496)
..
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0078 Score=41.16 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHc----CC-Cch-HHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 438 SLASVISACANISSLELGEQVFARVTII----GL-DSD-QIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+|+.+...|...|++++|...+++..+. |- .|+ ..++..+..+|.+.|++++|.++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555566666666666666644321 11 122 4556666666666777776666654
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.61 Score=38.93 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--------CCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhCC---CCCCHHHHH
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN--------KSL-ISWNSMIVGLSQNGSPIEALDLFCNMNKLD---LRMDKFSLA 440 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~ 440 (496)
+......+.+...+++|-..+.+-.. ++. ..|-..|-.|....++..|...++.-.+-+ -+-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 33455566666666666555444332 121 234455556666677777777777644422 123556777
Q ss_pred HHHHHHhccCchhhHHHHHH
Q 010961 441 SVISACANISSLELGEQVFA 460 (496)
Q Consensus 441 ~l~~~~~~~g~~~~a~~~~~ 460 (496)
.|+.+| ..||.+.+..++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 777766 4477776665543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.096 Score=39.46 Aligned_cols=51 Identities=6% Similarity=-0.005 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH-cCCCchHHHHHHHHHHHH
Q 010961 432 LRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYC 482 (496)
Q Consensus 432 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 482 (496)
..|+..++.+++.+|+..|++..|.++++...+ .+++.+..+|..|++=..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456677777777777777777777777775543 456666677776666443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.046 Score=37.29 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCC---cC-HHHHHHHHHHHHccchHHHHHHHHHHHH
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ---CD-AFILATVIGACADLAALEYGKQIHSHIL 199 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (496)
.+|+.+...|...|++++|++.|++..+. ..... |+ ..++..+..++...|+++.|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677778888888888888888777653 11111 22 3445555566666666666666666554
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.091 Score=44.54 Aligned_cols=99 Identities=11% Similarity=0.152 Sum_probs=73.2
Q ss_pred CCcchHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc----------------chhhHHH
Q 010961 267 TSSVMWNSMISGYIS-----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG----------------FLEHGKQ 325 (496)
Q Consensus 267 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~----------------~~~~a~~ 325 (496)
.|-.+|-..+..+.. .+..+-....++.|.+.|+.-|..+|+.|++.+-+.. +-+-+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 345556666655543 3556667777888999999999999999998765532 2356889
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCChh-hHHHHHHhc
Q 010961 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPS-DACKLFSEL 365 (496)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~ 365 (496)
++++|..+|+.||..+-..+++++.+.+-.- +...+.-.|
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 9999999999999999999999998887543 333444333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.071 Score=41.81 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHH-----HcCCCcchhH
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL-----VNGLDFDSVL 209 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 209 (496)
...++..+...|++++|+++.+.+... .+-+...+..++.++...|+...|.+.|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344445555566666666666666551 22244556666666666666666666665543 2466666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.51 Score=35.17 Aligned_cols=138 Identities=9% Similarity=0.117 Sum_probs=69.7
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc-CchhhHHHHHHHHHhcCCHHHHHHHHh
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIEDAKHIFR 394 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 394 (496)
-.|..++..++..+...+. +..-+|.++--....-+-+-..+.++.+-. -|.. ..|++......+-
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis----------~C~NlKrVi~C~~ 80 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS----------KCGNLKRVIECYA 80 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG----------G-S-THHHHHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch----------hhcchHHHHHHHH
Confidence 3566666666666665542 333344444333333334444444444331 1111 1222222222222
Q ss_pred hCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCC
Q 010961 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468 (496)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 468 (496)
.+. .+.......+.....+|+-+.-.+++..+.+. -.|++....-+..+|.+.|+..++.+++.+.-+.|++
T Consensus 81 ~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 81 KRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred Hhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 221 22234455567777788888888888887653 3777888888888888888888888888888777764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.4 Score=41.85 Aligned_cols=168 Identities=15% Similarity=0.181 Sum_probs=88.3
Q ss_pred HHHHHhcCChHHHHHHhhhCCC--C---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHH
Q 010961 48 LQMYMRCGNPTDALLLFDEMPR--R---NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122 (496)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 122 (496)
++.+.+.+.+++|+...+.... + -...+...|..+...|++++|-.+.-.|...+..-|.--+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 5566666777777776665543 1 1234566666777777777777777777766666666666666665555433
Q ss_pred HHHHhhcCC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 010961 123 RTLFNDMPR-RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 123 ~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
..++=.-+. -+...|..++..+.. .+...-.++.. . .+++...-...+++- .. +..+.
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~---~-----Wp~~Lys~l~iisa~--~~----------q~~q~ 501 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIK---E-----WPGHLYSVLTIISAT--EP----------QIKQN 501 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHH---h-----CChhhhhhhHHHhhc--ch----------HHHhh
Confidence 322211111 144566666666665 22222222211 1 222222111111110 00 11110
Q ss_pred CCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCh
Q 010961 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238 (496)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (496)
-. +...-..|+..|...+++..|+.++-...+++.
T Consensus 502 -Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 502 -SE-STALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred -cc-chhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 01 222233488888888999999998888887554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.067 Score=35.85 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=28.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 143 CYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
.|.+.+++++|++.++.+.. ..| +...+.....++...|+++.|.+.++...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALE-----LDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHH-----hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45555555555555555555 222 23334444455555555555555555555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.69 E-value=2.1 Score=41.07 Aligned_cols=83 Identities=11% Similarity=-0.060 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHchhccCCcCHHHHHHHH-HHHHccchHHHHHHHHHHHHHcC---CCcchhHHHHHHHHHHhcCCh
Q 010961 148 GFAREAVRLFKELNSDLVERLQCDAFILATVI-GACADLAALEYGKQIHSHILVNG---LDFDSVLGSSLVNLYGKCGDF 223 (496)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 223 (496)
...+.|.++++.+.+ .-|+...|...- +.+...|+++.|.+.++...... .+.....+-.++-.+.-.++|
T Consensus 247 ~~~~~a~~lL~~~~~-----~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w 321 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK-----RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW 321 (468)
T ss_pred CCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH
Confidence 345555555555555 334444433332 44445556666666655433211 111222334455555556666
Q ss_pred hhHHHHHHhcCC
Q 010961 224 NSANQVLNMMKE 235 (496)
Q Consensus 224 ~~a~~~~~~~~~ 235 (496)
++|...|..+.+
T Consensus 322 ~~A~~~f~~L~~ 333 (468)
T PF10300_consen 322 EEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.31 Score=38.19 Aligned_cols=78 Identities=13% Similarity=0.021 Sum_probs=37.6
Q ss_pred cCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChhhHHHHHH
Q 010961 352 RGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP---NKSLISWNSMIVGLSQNGSPIEALDLFC 425 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 425 (496)
.|++++|..+|.-+. ..++.-+..|..++-..++++.|...|.... ..|+..+-....+|...|+.+.|...|+
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHH
Confidence 344444444444333 2233333444444444444444444444321 2344444445566666666666666666
Q ss_pred HHHh
Q 010961 426 NMNK 429 (496)
Q Consensus 426 ~m~~ 429 (496)
...+
T Consensus 130 ~a~~ 133 (165)
T PRK15331 130 LVNE 133 (165)
T ss_pred HHHh
Confidence 6655
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.62 E-value=2.2 Score=40.76 Aligned_cols=92 Identities=14% Similarity=0.020 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcccC---chhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHH
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLS 412 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 412 (496)
..+|...+..-...|+.+.+.-+|++...| -...|--.+.-....|+.+-|..++....+ |+......+-..+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 344555555555556666665555555422 122333333333333555555555544432 22111111111111
Q ss_pred -hCCChhhHHHHHHHHHhC
Q 010961 413 -QNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 413 -~~g~~~~a~~~~~~m~~~ 430 (496)
..|++..|..+++...+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HhhccHHHHHHHHHHHHhh
Confidence 245666666666665554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.4 Score=45.52 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=78.3
Q ss_pred CChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHH----HccchHHHHH
Q 010961 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC----ADLAALEYGK 192 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~ 192 (496)
++++.|+.-+..+. ...|.-.++.--+.|.+.+|+.++ +|+...+.....+| ...+.++.|-
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly-----------~~~~e~~k~i~~~ya~hL~~~~~~~~Aa 959 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY-----------KPDSEKQKVIYEAYADHLREELMSDEAA 959 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee-----------ccCHHHHHHHHHHHHHHHHHhccccHHH
Confidence 46666666665554 334455555555666677766653 45655555554444 3445555555
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHH---HHHHHHHHhcCChhHHHHHHHhcCCCCc
Q 010961 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL---SALISGYANCGKMNDARRVFDRTTDTSS 269 (496)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 269 (496)
-.|+..-+ ..-.+.+|..+|+|.+|+.+..++..+-.... ..|+.-+...++.-+|-++..+......
T Consensus 960 l~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~ 1030 (1265)
T KOG1920|consen 960 LMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE 1030 (1265)
T ss_pred HHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH
Confidence 54443321 12345566666777777777666665333332 4555566666666666666555443322
Q ss_pred chHHHHHHHHHhCCCHHHHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLF 292 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~ 292 (496)
... ..+++...+++|+++-
T Consensus 1031 ~av----~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 1031 EAV----ALLCKAKEWEEALRVA 1049 (1265)
T ss_pred HHH----HHHhhHhHHHHHHHHH
Confidence 222 2333344455555444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.23 Score=37.48 Aligned_cols=99 Identities=7% Similarity=0.013 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHH
Q 010961 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182 (496)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 182 (496)
..++..++-++++.|+++....+++..-..|+..- ...+. .. ...+..|+..+..+++.++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~-------~~~~~----------~~--~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGK-------KKEGD----------YP--PSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCc-------cccCc----------cC--CCCCCCCCHHHHHHHHHHH
Confidence 44566666666666666666666655432111000 00000 11 1145667777777777777
Q ss_pred HccchHHHHHHHHHHHHH-cCCCcchhHHHHHHHHHHhc
Q 010961 183 ADLAALEYGKQIHSHILV-NGLDFDSVLGSSLVNLYGKC 220 (496)
Q Consensus 183 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 220 (496)
+..+++..|.++.+...+ .+++.+..++..|+......
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 777777777777777654 45666677777777665543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.16 Score=46.80 Aligned_cols=97 Identities=12% Similarity=0.020 Sum_probs=63.0
Q ss_pred cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHH
Q 010961 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440 (496)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 440 (496)
+.+...++.+..+|.+.|++++|+..|++..+ |+. .+|..+..+|...|+.++|+..+++..+.+ .| .|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 34566788888888888888888888888664 543 347888888888888888888888888752 22 122
Q ss_pred HHHH--HHhccCchhhHHHHHHHHHHcCC
Q 010961 441 SVIS--ACANISSLELGEQVFARVTIIGL 467 (496)
Q Consensus 441 ~l~~--~~~~~g~~~~a~~~~~~~~~~~~ 467 (496)
.+.. .+....+.+...++++...+.|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 01122333456666666666554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.1 Score=35.44 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHH
Q 010961 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340 (496)
Q Consensus 289 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 340 (496)
+++++.+.+.+++|+...+..++..+.+.|.+....+ +...++-+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk 61 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSK 61 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcH
Confidence 3455556667777777777777777777776554333 33444444443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=2 Score=37.94 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcC-ChhHHHHHH-HhcCCCCcchHHHHHHHHHhCC
Q 010961 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG-KMNDARRVF-DRTTDTSSVMWNSMISGYISNN 283 (496)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~~ 283 (496)
+..+-...+.++.+.++.+....+...+.+++...-...+.++.+.+ ....+...+ ..+..++...-...+.++.+.|
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 33444445555555555433333333344444444333344443332 112222222 2223344444444455555555
Q ss_pred CHHHHHHHHHHHH
Q 010961 284 EDTEALLLFHKMR 296 (496)
Q Consensus 284 ~~~~a~~~~~~m~ 296 (496)
+ ..++..+-...
T Consensus 221 ~-~~av~~Li~~L 232 (280)
T PRK09687 221 D-KRVLSVLIKEL 232 (280)
T ss_pred C-hhHHHHHHHHH
Confidence 4 23333333333
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.24 E-value=3 Score=39.93 Aligned_cols=176 Identities=13% Similarity=0.035 Sum_probs=102.1
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 010961 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVL--EDASTLASVL 311 (496)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~l~ 311 (496)
+..+|...+.-....|+.+.+.-+|++...|- ...|--.+.-....|+.+-|-.++..-.+--++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45678888888888888888888888876653 234444444445558887777777665554322 2222222222
Q ss_pred HHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHH---HHHHhcc--cCchhhHHHHHHHHH-----
Q 010961 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC---KLFSELK--VYDTILLNTMITVYS----- 381 (496)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~--~~~~~~~~~l~~~~~----- 381 (496)
+-..|+...|..+++.+.+.- +.-..+-..-+....+.|+.+.+. +++.... ..+..+...+.--+.
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 345678888888888887753 222222233344455667777666 3333333 223333333332222
Q ss_pred hcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 010961 382 SCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNG 415 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g 415 (496)
-.++.+.|..++.++.+ ++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 24667777777777765 34556666666665544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.57 Score=44.85 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=118.9
Q ss_pred hhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC-CCh---------hhHHHHHHHHHh----cCCHHH
Q 010961 25 KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-RNC---------FSWNAMIEGFMK----LGHKEK 90 (496)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~---------~~~~~l~~~~~~----~~~~~~ 90 (496)
.-+|.-++..= |+ .+..++...+-.|+-+.+++++....+ ++. ..|+..+..++. ..+.+.
T Consensus 177 ~G~f~L~lSlL--Pp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 177 FGLFNLVLSLL--PP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHhC--CH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 66677777653 22 446899999999999999999987665 222 235555555443 457889
Q ss_pred HHHHHhhCCC--CChhhHHHHH-HHHHhcCChhHHHHHHhhcCCC-------CcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 010961 91 SLQLFNVMPQ--KNDFSWNMLI-SGFAKAGELKTARTLFNDMPRR-------NAIAWNSMIHCYVRNGFAREAVRLFKEL 160 (496)
Q Consensus 91 a~~~~~~~~~--~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 160 (496)
|.++++.+.+ |+...|...- +.+...|++++|++.|+..... ....+--+.-++.-.++|++|.+.|..+
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 9999999987 8876665443 5567789999999999976531 2334556667788899999999999999
Q ss_pred HHchhccCCcCHHHHHHHHHHH-HccchH-------HHHHHHHHHHHH
Q 010961 161 NSDLVERLQCDAFILATVIGAC-ADLAAL-------EYGKQIHSHILV 200 (496)
Q Consensus 161 ~~~~~~~~~p~~~~~~~ll~~~-~~~~~~-------~~a~~~~~~~~~ 200 (496)
.+. ..-+..+|.-+..+| ...++. ++|.+++.+...
T Consensus 332 ~~~----s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 332 LKE----SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred Hhc----cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 984 233445555555443 345555 889888888754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.3 Score=45.05 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=37.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHhhcCC--CCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 102 NDFSWNMLISGFAKAGELKTARTLFNDMPR--RNA----IAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
+...++.+..+|...|++++|+..|++..+ |+. .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666666666666666666543 332 2366666666666666666666666655
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.077 Score=41.42 Aligned_cols=131 Identities=10% Similarity=0.187 Sum_probs=88.7
Q ss_pred HHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCC
Q 010961 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87 (496)
Q Consensus 8 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (496)
...+++.+...+.++....+++.+.+.+...+.. ..+.++..|++.++.++..++++.... .-...++..|.+.|.
T Consensus 10 ~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~-~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 10 ISEVISAFEERNQPEELIEYLEALVKENKENNPD-LHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGL 85 (143)
T ss_dssp SCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHH-HHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHH-HHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcch
Confidence 4456778888999999999999999877555555 899999999999988999988883332 444567777778888
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCC
Q 010961 88 KEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149 (496)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 149 (496)
++.|.-++.++...+.. +..+...++++.|.+.+.... +...|..+++.+...++
T Consensus 86 ~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~~--~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKVD--DPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGCS--SSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhcC--cHHHHHHHHHHHHhcCc
Confidence 88877777766542211 111233455555554444443 46678888877766554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.52 Score=37.01 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=65.0
Q ss_pred HHhcCChhHHHHHHhhcCCCCcccHHHHH-----HHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHH-----HHH
Q 010961 113 FAKAGELKTARTLFNDMPRRNAIAWNSMI-----HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI-----GAC 182 (496)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll-----~~~ 182 (496)
+++.+..++|+.-|..+.+.+...|-.|. ......|+...|+..|.+.-.. .|.+.....+. -.+
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-----t~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-----TSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-----CCCcchhhHHHHHHHHHHH
Confidence 34566777777777777766555555443 2345667777777777777652 22222222221 123
Q ss_pred HccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 183 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
...|.++....-.+-+...+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34556665555555554444433334445555555566666666666666553
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.2 Score=35.86 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=8.1
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 010961 140 MIHCYVRNGFAREAVRLFK 158 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~ 158 (496)
-...|...|.++.|-..++
T Consensus 97 As~lY~E~GspdtAAmale 115 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALE 115 (308)
T ss_pred HHHHHHHhCCcchHHHHHH
Confidence 3344444444444443333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.33 Score=42.90 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=59.3
Q ss_pred HHHHHHccchHHHHHHHHHHHHHcC-----CCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC-------CChHH-HH--
Q 010961 178 VIGACADLAALEYGKQIHSHILVNG-----LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-------PDDFC-LS-- 242 (496)
Q Consensus 178 ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~-~~-- 242 (496)
+..++...+.++++.+.|+...+.. .-....++..|...|.+..|+++|.-+..+..+ .|... |.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444555555555555555544321 112234566666666666666666554443321 12111 11
Q ss_pred ---HHHHHHHhcCChhHHHHHHHhcCC-----CC----cchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 243 ---ALISGYANCGKMNDARRVFDRTTD-----TS----SVMWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 243 ---~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
.+.-++...|....|.+..++..+ .| ......+...|...|+.+.|+.-|+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 222334455666666665554433 12 223444556677777777777666553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.35 Score=43.53 Aligned_cols=98 Identities=14% Similarity=-0.013 Sum_probs=59.5
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--------C----------ChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHH
Q 010961 80 EGFMKLGHKEKSLQLFNVMPQ--------K----------NDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWN 138 (496)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~--------~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 138 (496)
..+.+.|++..|..-|++... + -..+++.+..++.+.+++..|++..+.... +|+-+.-
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 356677777777777666432 0 123456666667777777777776666553 3555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHH
Q 010961 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 182 (496)
.-..++...|+++.|...|+++.+ +.|+......=+..|
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k-----~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK-----LEPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH-----hCCCcHHHHHHHHHH
Confidence 556667777777777777777766 566555444433333
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=3 Score=36.82 Aligned_cols=134 Identities=17% Similarity=0.054 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHhc-ccCchhhHHHHHHHHHhcC-CHHHHHH-HHhhCCCCChhhHHHHHHHHHhC
Q 010961 338 DVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSCG-RIEDAKH-IFRTMPNKSLISWNSMIVGLSQN 414 (496)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~ 414 (496)
+..+-...+.++.+.++.+ +...+-.+ ..++...-...+.++.+.+ +...+.. +...+..++..+-...+.++.+.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~-ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 141 STNVRFAVAFALSVINDEA-AIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred CHHHHHHHHHHHhccCCHH-HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 4445555566666666543 33333333 3455555555555555543 1223333 33344456777777777888887
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 415 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
|+. .|+..+-+..+.+ + .....+.++...|+. +|...+..+.+. .||..+-..-++++
T Consensus 220 ~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 220 KDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 774 5666666655543 2 234567777777775 567677766553 24665555555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.49 E-value=3 Score=36.26 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=69.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCC-cccHH---HHHHHHHHcCCHHH
Q 010961 80 EGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPRRN-AIAWN---SMIHCYVRNGFARE 152 (496)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---~li~~~~~~~~~~~ 152 (496)
......|++.+|..+|....+ .+...-..++.+|...|+++.|..++..++... ...+. .-|..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345566777777777766654 334455666677777777777777777776421 11111 22334444444444
Q ss_pred HHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCC-CcchhHHHHHHHHHHhcC
Q 010961 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL-DFDSVLGSSLVNLYGKCG 221 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 221 (496)
..++-.+.-. .+-|...-..+...+...|+.+.|.+.+-.+.+... .-|...-..|+..+..-|
T Consensus 222 ~~~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444344333 112444444555555556666665554444433221 113334444554444444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.42 E-value=2.8 Score=35.66 Aligned_cols=177 Identities=14% Similarity=0.099 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
+-.-+..-.+.|++++|.+.|+.+... ....| ...+...++.++.+.++++.|....++....-+.....-|...|.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 333444556778888888888888764 22222 344555666677777888888887777776554433334444444
Q ss_pred HHHhc-------CChhhHHHHHHhcCC-----CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchH-HHHHHHHHhC
Q 010961 216 LYGKC-------GDFNSANQVLNMMKE-----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW-NSMISGYISN 282 (496)
Q Consensus 216 ~~~~~-------~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~l~~~~~~~ 282 (496)
+.+.- .|...+..-+..+.+ ||.. =...|..-...+... ..-+ -.+.+-|.+.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-------------Ya~dA~~~i~~~~d~-LA~~Em~IaryY~kr 180 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-------------YAPDAKARIVKLNDA-LAGHEMAIARYYLKR 180 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc-------------chhhHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 44421 222222332222221 2210 000000000000000 0011 1234567778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcccchhhHHHHHHHH
Q 010961 283 NEDTEALLLFHKMRRNGVLEDA---STLASVLSACSSLGFLEHGKQVHGHA 330 (496)
Q Consensus 283 ~~~~~a~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 330 (496)
|.+-.|..-++.|.+. .+-+. ..+-.+..+|...|-.++|...-.-+
T Consensus 181 ~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 181 GAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred cChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 8888888888888776 22222 23444455666666666666554433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.40 E-value=1.7 Score=38.27 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=21.6
Q ss_pred HHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 010961 349 YSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTM 396 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 396 (496)
+..+|-+++|++.-++.. +.|...-.+....+-..|++.++.++..+-
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 334455555555444443 223333344444444455555555544443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.32 E-value=2.1 Score=33.96 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=26.2
Q ss_pred HHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHH
Q 010961 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 210 (496)
++++.+.+ .++.|+...+..++..+.+.|.+.. +.++++.++-+|+...
T Consensus 15 EYirSl~~---~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~l 63 (167)
T PF07035_consen 15 EYIRSLNQ---HNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPL 63 (167)
T ss_pred HHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHH
Confidence 34444444 4566666667777777766666543 3333444444444433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.21 E-value=2 Score=33.22 Aligned_cols=20 Identities=0% Similarity=0.228 Sum_probs=8.0
Q ss_pred HHHHHHhcCChHHHHHHhhh
Q 010961 47 LLQMYMRCGNPTDALLLFDE 66 (496)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~ 66 (496)
++..+...+.+......++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~ 32 (140)
T smart00299 13 VVELFEKRNLLEELIPYLES 32 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHH
Confidence 33333333444444444433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.54 Score=42.41 Aligned_cols=86 Identities=15% Similarity=-0.011 Sum_probs=54.0
Q ss_pred HHHHHHhcCChhhHHHHHHhcc------------------cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhh
Q 010961 345 LLDTYSKRGMPSDACKLFSELK------------------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLIS 403 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~~~~------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~ 403 (496)
-...|.+.|++..|...|++.. ..-..++..+..++.+.+++..|+..-+.... +|+-.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 3456788888888888877654 01122455566666666666666666665543 45555
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
.-.-..+|...|+++.|...|+++.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555566666667777777777766664
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.04 E-value=3.7 Score=35.67 Aligned_cols=139 Identities=10% Similarity=0.066 Sum_probs=67.9
Q ss_pred hcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccC-chh---hHHHHHHHHHhcCCHHHHH
Q 010961 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-DTI---LLNTMITVYSSCGRIEDAK 390 (496)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~l~~~~~~~~~~~~a~ 390 (496)
...|++..|...|+....... -+...--.+..+|...|+.+.|..++..+... ... ....-+..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 345555555555555554421 12333445556666666666666666665511 111 1111223333333333333
Q ss_pred HHHhhCC-CC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCchhh
Q 010961 391 HIFRTMP-NK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLEL 454 (496)
Q Consensus 391 ~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~ 454 (496)
.+-.+.- .| |...-..+...+...|+.+.|++.+-.+..+.. --|...-..++..+...|..+.
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 3333332 24 444555566777777777777776666554321 2244455566666655553333
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.00 E-value=2.7 Score=33.99 Aligned_cols=86 Identities=13% Similarity=-0.034 Sum_probs=54.0
Q ss_pred HHHHHhcCChhhHHHHHHhcc-cCchhhH-----HHHHHHHHhcCCHHHHHHHHhhCCCCChhh--HHHHHHHHHhCCCh
Q 010961 346 LDTYSKRGMPSDACKLFSELK-VYDTILL-----NTMITVYSSCGRIEDAKHIFRTMPNKSLIS--WNSMIVGLSQNGSP 417 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~-~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 417 (496)
...+..+|++++|...++... .+....+ -.|.......|.+|+|++.++....++... ...-.+.+...|+-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 455667777777777777555 2222222 234455666777777777777777664433 44455667777777
Q ss_pred hhHHHHHHHHHhCC
Q 010961 418 IEALDLFCNMNKLD 431 (496)
Q Consensus 418 ~~a~~~~~~m~~~~ 431 (496)
++|..-|++....+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 77777777776654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.88 Score=33.87 Aligned_cols=89 Identities=18% Similarity=0.064 Sum_probs=51.2
Q ss_pred HHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc--CHHHHHHHHHHHHccc
Q 010961 112 GFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC--DAFILATVIGACADLA 186 (496)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~ 186 (496)
+++..|+++.|++.|.+... ....+||.-..++--.|+.++|++-+++..+. .|-+. -...|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL--ag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL--AGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHhC
Confidence 34556677777776666542 35666777777777777777777777666654 22221 1122222233445566
Q ss_pred hHHHHHHHHHHHHHcC
Q 010961 187 ALEYGKQIHSHILVNG 202 (496)
Q Consensus 187 ~~~~a~~~~~~~~~~~ 202 (496)
+.+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666666655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.9 Score=33.79 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=11.0
Q ss_pred HHHhCCChhhHHHHHHHHHhC
Q 010961 410 GLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 410 ~~~~~g~~~~a~~~~~~m~~~ 430 (496)
.+...|++.+|..+|+.+.+.
T Consensus 53 l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhcc
Confidence 344555555555555555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.19 Score=29.56 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+..+...|...|++++|.+++++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.66 E-value=1.5 Score=38.99 Aligned_cols=214 Identities=11% Similarity=0.037 Sum_probs=93.2
Q ss_pred HhcCChhHHHHHHHhcCCC------CcchHHHHHHHHHhCCCHHHHHHHHH-HHHHC-CCCCC---HHHHHHHHHHHhcc
Q 010961 249 ANCGKMNDARRVFDRTTDT------SSVMWNSMISGYISNNEDTEALLLFH-KMRRN-GVLED---ASTLASVLSACSSL 317 (496)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~-g~~~~---~~~~~~l~~~~~~~ 317 (496)
....+.++|+..+.+.... -..+|..+..+.++.|.+++++..-- .|.-. ....+ ...|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666554431 12345555566666666666554321 11100 00111 12233333333333
Q ss_pred cchhhHHHHHHHHHHc-CCCc---hHHHHHHHHHHHHhcCChhhHHHHHHhcc-----cC----chhhHHHHHHHHHhcC
Q 010961 318 GFLEHGKQVHGHACKV-GVID---DVIVASALLDTYSKRGMPSDACKLFSELK-----VY----DTILLNTMITVYSSCG 384 (496)
Q Consensus 318 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~----~~~~~~~l~~~~~~~~ 384 (496)
-++.+++.+-..-... |..| ......++..++...+.++++++.|+... .. ...++..|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 3444444333332221 1111 11222334455555556666666665544 11 1234555666666666
Q ss_pred CHHHHHHHHhhCCC-------CChh------hHHHHHHHHHhCCChhhHHHHHHHHHh----CCCCCC-HHHHHHHHHHH
Q 010961 385 RIEDAKHIFRTMPN-------KSLI------SWNSMIVGLSQNGSPIEALDLFCNMNK----LDLRMD-KFSLASVISAC 446 (496)
Q Consensus 385 ~~~~a~~~~~~~~~-------~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~l~~~~ 446 (496)
++++|.-+..+..+ .|.. +.-.|.-++-..|....|.+.-++..+ .|-+|. ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 66655444433221 2221 112233444455555555555554332 332221 22344455555
Q ss_pred hccCchhhHHHHHHHH
Q 010961 447 ANISSLELGEQVFARV 462 (496)
Q Consensus 447 ~~~g~~~~a~~~~~~~ 462 (496)
...|+.+.|+.-++..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 5566666655555554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.6 Score=39.85 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhhcCC--C----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC-HHHHHH
Q 010961 105 SWNMLISGFAKAGELKTARTLFNDMPR--R----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD-AFILAT 177 (496)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~ 177 (496)
.|+.-+..+ +.|++..|...|....+ | ...++-.|..++...|++++|...|..+.+. .+-.|- +..+..
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCCChHHHHH
Confidence 355555543 45667777777776654 2 2345667777777778888777777777764 222232 255666
Q ss_pred HHHHHHccchHHHHHHHHHHHHHc
Q 010961 178 VIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 178 ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
+..+..+.|+.+.|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666666777777777777776664
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.8 Score=37.12 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCchhhHHHHHHHHH
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK--FSLASVISACANISSLELGEQVFARVT 463 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (496)
.+..+...|++.|+.+.|++.+.++.+....|.. ..+-.+|+...-.|++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4556666666667777777766666665444432 245556666666666666666666544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.95 Score=39.30 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHh-----CCCCCCHHHHHH
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNK-----LDLRMDKFSLAS 441 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 441 (496)
++..++..+...|+++.+...+++... -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 344455555555555555555555443 1334555555555555555555555555433 344444444333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.50 E-value=5.1 Score=35.45 Aligned_cols=156 Identities=12% Similarity=0.049 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcCChhh---HHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHH
Q 010961 340 IVASALLDTYSKRGMPSD---ACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVG 410 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~---a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~ 410 (496)
.++..++.+|...+..+. |..+++.+. +..+..+..-+..+.+.++.+.+.+.+.+|... ....+...+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 455667777777665543 444444443 223455556666666678888888888887652 23445555544
Q ss_pred HH--hCCChhhHHHHHHHHHhCCCCCCHH-HHH----HHHHHHhccCc------hhhHHHHHHHHHH-cCCCchHHHHHH
Q 010961 411 LS--QNGSPIEALDLFCNMNKLDLRMDKF-SLA----SVISACANISS------LELGEQVFARVTI-IGLDSDQIISTS 476 (496)
Q Consensus 411 ~~--~~g~~~~a~~~~~~m~~~~~~p~~~-~~~----~l~~~~~~~g~------~~~a~~~~~~~~~-~~~~~~~~~~~~ 476 (496)
+. .......|...+..+....+.|... ... ..+....+.++ .+....+++...+ .+.+.+..+-.+
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a 244 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASA 244 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 42 1233456667776666555555543 111 11112222222 3344444553332 333444444443
Q ss_pred HHHH-------HHhcCChHHHHHhhh
Q 010961 477 LVDF-------YCKCGFIKMDEYYLM 495 (496)
Q Consensus 477 l~~~-------~~~~g~~~~A~~~~~ 495 (496)
+.-. ..+.+++++|.+.++
T Consensus 245 ~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 245 IHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 3333 457788898887764
|
It is also involved in sporulation []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.50 E-value=3 Score=37.05 Aligned_cols=122 Identities=8% Similarity=0.159 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHh--cC----ChhhHHHHHHhcc-------cCchhhHHHHHHHHHhcCCH--
Q 010961 322 HGKQVHGHACKVGVIDDVIVASALLDTYSK--RG----MPSDACKLFSELK-------VYDTILLNTMITVYSSCGRI-- 386 (496)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~-- 386 (496)
+...+++.+.+.|+.-+..+|-+....... .. ...+|.++|+.|+ .++...+..++.. ..++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344455555555555554444332222222 11 2356778888887 2334444444433 22222
Q ss_pred --HHHHHHHhhCCC-----C-ChhhHHHHHHHHHhCCC--hhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 387 --EDAKHIFRTMPN-----K-SLISWNSMIVGLSQNGS--PIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 387 --~~a~~~~~~~~~-----~-~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
+.++.+|+.+.+ . +......++...-.... ...+.++++.+++.|+++....|..+.-.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 344555555443 1 22333333332222222 34677778888888877776666655443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.9 Score=34.03 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=29.7
Q ss_pred HhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 412 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
..+|.++....-.+.+...+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34566666655555555444333334445555555666777777776665544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.35 Score=28.44 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
.++..+..+|...|++++|.++++++.+.... |+..+..|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 35667778888888888888888888775432 445554443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.35 Score=37.67 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=51.2
Q ss_pred HHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHH
Q 010961 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389 (496)
Q Consensus 310 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 389 (496)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|-++.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCHHHHHHHHHhcchHHHH
Confidence 44555666677777777777776655566677777777777777667777666632 223334555555666666666
Q ss_pred HHHHhhCC
Q 010961 390 KHIFRTMP 397 (496)
Q Consensus 390 ~~~~~~~~ 397 (496)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 55555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.16 E-value=4.9 Score=34.24 Aligned_cols=172 Identities=12% Similarity=0.017 Sum_probs=90.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc--
Q 010961 277 SGYISNNEDTEALLLFHKMRRNG--VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR-- 352 (496)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 352 (496)
..-.+.|++++|.+.|+.+...- -+-...+...++-++.+.++++.|....++..+.-......-|...|.+++..
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence 34456677777777777776541 12234455556666667777777777777766643332222344444444321
Q ss_pred -----CChhhHHHHHHhcc-----cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh-H-HHHHHHHHhCCChhhH
Q 010961 353 -----GMPSDACKLFSELK-----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-W-NSMIVGLSQNGSPIEA 420 (496)
Q Consensus 353 -----~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~l~~~~~~~g~~~~a 420 (496)
.+...+..-+..+. -||+. =...|..-+..+ .|... + -.+.+.|.+.|.+..|
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-------------Ya~dA~~~i~~~--~d~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRYPNSR-------------YAPDAKARIVKL--NDALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHCCCCc-------------chhhHHHHHHHH--HHHHHHHHHHHHHHHHHhcChHHH
Confidence 12222222222221 11110 000010000000 01111 1 1345778889999999
Q ss_pred HHHHHHHHhCCCCCCHH---HHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 421 LDLFCNMNKLDLRMDKF---SLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 421 ~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
..-+++|.+. .+-+.. .+-.+..+|...|-.++|...-+-+..
T Consensus 187 ~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 187 INRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999999886 443433 455566778888888888877665544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.12 E-value=3.7 Score=38.48 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHH
Q 010961 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199 (496)
Q Consensus 138 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (496)
..+..+.-+.|+.++|++.|.+|.+. .+..-+......|+.++...+.+.++..++.+--
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke--~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKE--FPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhh--CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34555555666666676666666552 1111122344555566666666666666655543
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=3 Score=38.89 Aligned_cols=138 Identities=9% Similarity=0.015 Sum_probs=74.0
Q ss_pred chhhHHHHHHHHHH-cCCCch-HHHHHHHHHHHHhc---------CChhhHHHHHHhcc---cCchhhHHHHHHHHHhcC
Q 010961 319 FLEHGKQVHGHACK-VGVIDD-VIVASALLDTYSKR---------GMPSDACKLFSELK---VYDTILLNTMITVYSSCG 384 (496)
Q Consensus 319 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~ 384 (496)
..+.|..+|.+... +...|+ ...|..+..++... ....+|.+.-+... +.|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 45677777877772 223333 33344443333221 12233444444444 455666666666666677
Q ss_pred CHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCchhhHHHH
Q 010961 385 RIEDAKHIFRTMPN--KSL-ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK---FSLASVISACANISSLELGEQV 458 (496)
Q Consensus 385 ~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
+++.|..+|++... ||. .+|........-.|+.++|.+.+++..+. .|.. ......++.|+..+ .+.+.++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 77777777777654 432 45555555566677777777777776554 4432 23333344454443 3444444
Q ss_pred H
Q 010961 459 F 459 (496)
Q Consensus 459 ~ 459 (496)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 4
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.92 E-value=6.3 Score=34.87 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=13.0
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 010961 145 VRNGFAREAVRLFKELNSD 163 (496)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~ 163 (496)
.+.|+.+.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 4567777777777777663
|
It is also involved in sporulation []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.75 E-value=1.2 Score=38.03 Aligned_cols=84 Identities=11% Similarity=0.141 Sum_probs=41.0
Q ss_pred hcCChhHHHHHHHhcCC--CC----cchHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhcccchh
Q 010961 250 NCGKMNDARRVFDRTTD--TS----SVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLE-DASTLASVLSACSSLGFLE 321 (496)
Q Consensus 250 ~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~-~~~~~~~l~~~~~~~~~~~ 321 (496)
+.|++..|...|....+ |+ +.++--|..++...|++++|..+|..+.+.- -.| -+..+-.|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34445555555554443 21 2233345556666666666666665555431 111 1234444444555555555
Q ss_pred hHHHHHHHHHHc
Q 010961 322 HGKQVHGHACKV 333 (496)
Q Consensus 322 ~a~~~~~~~~~~ 333 (496)
.|..+|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.63 E-value=5.6 Score=33.59 Aligned_cols=212 Identities=15% Similarity=0.109 Sum_probs=125.4
Q ss_pred cCChhHHHHHHHhcCCCC-----cchHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcccchhhHH
Q 010961 251 CGKMNDARRVFDRTTDTS-----SVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGK 324 (496)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~ 324 (496)
.+....+...+....... ...+......+...+.+..+...+...... ........+..........+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 344555555555444322 356666777777888888888877777652 23444555556666666777777788
Q ss_pred HHHHHHHHcCCCchHHHHHHHHH-HHHhcCChhhHHHHHHhcccCch------hhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010961 325 QVHGHACKVGVIDDVIVASALLD-TYSKRGMPSDACKLFSELKVYDT------ILLNTMITVYSSCGRIEDAKHIFRTMP 397 (496)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 397 (496)
..+.........+. ........ .+...|+++.|...+.+....++ ..+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 87777776543331 11222222 67777888888887777643221 122223333455677777777777665
Q ss_pred C--C--ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 398 N--K--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-KFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 398 ~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
. + ....+..+...+...++...+...+...... .|+ ...+..+...+...+..+.+...+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 2 2445666667777777777777777777664 333 334444444444555667777766666553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.32 Score=27.07 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELN 161 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~ 161 (496)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677778888888888888887744
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.60 E-value=12 Score=37.48 Aligned_cols=162 Identities=10% Similarity=0.017 Sum_probs=81.0
Q ss_pred hhhHHHHHHHHH-hcCCHHHHHHHHhhCCC----CCh-----hhHHHHHHHHHhcCChhHHHHHHhhcCCC----Cccc-
Q 010961 72 CFSWNAMIEGFM-KLGHKEKSLQLFNVMPQ----KND-----FSWNMLISGFAKAGELKTARTLFNDMPRR----NAIA- 136 (496)
Q Consensus 72 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~----~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 136 (496)
..++-.+...+. ...+++.|...+++... ++. .....++..+.+.+... |...+++..+. ....
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 345555566555 56777777777776643 111 11233445555554444 66666664421 1112
Q ss_pred ---HHHH-HHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHH--ccchHHHHHHHHHHHHHcCC-------
Q 010961 137 ---WNSM-IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA--DLAALEYGKQIHSHILVNGL------- 203 (496)
Q Consensus 137 ---~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~------- 203 (496)
+..+ +..+...+++..|++.++.+.........|-...+..++.+.. +.+..+.+.+.++.+.....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2222 2222233677778887777766422224444455555555443 34445555555555533221
Q ss_pred --CcchhHHHHHHHHHH--hcCChhhHHHHHHhcC
Q 010961 204 --DFDSVLGSSLVNLYG--KCGDFNSANQVLNMMK 234 (496)
Q Consensus 204 --~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 234 (496)
.|...++..+++.++ ..|+++.+...++++.
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 224445555555443 3566556655555443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.4 Score=32.84 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=46.7
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCch
Q 010961 379 VYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF---SLASVISACANISSL 452 (496)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~ 452 (496)
++...|+++.|++.|.+... .+...||.-..++.-+|+.++|++-+.+..+..-.-+.. .|..=...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34445555555555555442 345566666666666666666666666665532111211 222222234455666
Q ss_pred hhHHHHHHHHHHcC
Q 010961 453 ELGEQVFARVTIIG 466 (496)
Q Consensus 453 ~~a~~~~~~~~~~~ 466 (496)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666655555
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.44 E-value=5.2 Score=35.41 Aligned_cols=144 Identities=17% Similarity=0.113 Sum_probs=71.0
Q ss_pred cCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc---CCCcchhHHHHHHHHHHhcCCh
Q 010961 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN---GLDFDSVLGSSLVNLYGKCGDF 223 (496)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 223 (496)
.|+..+|-..++++.++ .+.|...+...=.+|...|+.+.....++++... +++..+.+-..+.-++...|-+
T Consensus 116 ~g~~h~a~~~wdklL~d----~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD----YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccccHHHHHHHHHHHh----CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 45555555555555552 4444445555555555556555555555555432 1111111222222333445666
Q ss_pred hhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCCC--C-----cchHHHHHHHHHhCCCHHHHHHHHH
Q 010961 224 NSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDT--S-----SVMWNSMISGYISNNEDTEALLLFH 293 (496)
Q Consensus 224 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-----~~~~~~l~~~~~~~~~~~~a~~~~~ 293 (496)
++|++.-++..+ -|.....+....+-..|+..++.++..+-... . ...|-...-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 666666665554 23334445555555666666666665543331 0 1122223334455577777777775
Q ss_pred H
Q 010961 294 K 294 (496)
Q Consensus 294 ~ 294 (496)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.29 Score=26.82 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=20.8
Q ss_pred hHHHHHhccCCCchHHHHHHHHHHHhcCChHHHH
Q 010961 28 HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61 (496)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 61 (496)
|+..++.. |+...+|+.+...|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444444 555557777777777777777765
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.27 Score=26.93 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=19.8
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHhcCChHHHH
Q 010961 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491 (496)
Q Consensus 460 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 491 (496)
++.++..+ -++..|+.|..+|...|++++|+
T Consensus 3 ~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNP-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444432 25677777777777777777775
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.94 E-value=4.9 Score=31.57 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=25.1
Q ss_pred hcCChhHHHHHHhhcC--CCCcccH-HHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 115 KAGELKTARTLFNDMP--RRNAIAW-NSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 115 ~~~~~~~a~~~~~~~~--~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
+.++.+++..++..+. .|..... ..-...++..|+|.+|+.+|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4456666666665553 2332221 2222345566666666666666655
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.4 Score=26.68 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHH
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNM 427 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m 427 (496)
|..|...|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555666666666666666553
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.71 E-value=3.3 Score=39.65 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=46.6
Q ss_pred hcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHH
Q 010961 115 KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194 (496)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 194 (496)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+....+
T Consensus 649 ~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD------------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc------------hhhhhhhhhhcCChhHHHHH
Confidence 4455555555443332 334555566666666666666655554433 33444444444554444444
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (496)
-....+.|.. |...-+|...|+++++.+++..
T Consensus 715 a~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 4444444322 2222334444555555555443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.67 E-value=6.8 Score=32.41 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCC
Q 010961 209 LGSSLVNLYGKCGDFNSANQVLNMMKEP 236 (496)
Q Consensus 209 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (496)
||--|...+...|+.++|..+|+.....
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4555566666666666666666555443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.49 E-value=2.7 Score=36.69 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=42.5
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 415 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
-++++++.++..=..-|+-||.++++.+++.+.+.+++..|.++.-.|+...
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3567888888888888888999999999999999999888888888776543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.47 E-value=16 Score=36.43 Aligned_cols=171 Identities=13% Similarity=0.090 Sum_probs=106.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--C---ChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHH
Q 010961 77 AMIEGFMKLGHKEKSLQLFNVMPQ--K---NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151 (496)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 151 (496)
--+..+.+.+.+++|++..+.... + -.......+..+.-.|++++|-...-.|...+...|...+..+...++..
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 456778899999999999887765 2 23467778888889999999999999999888888888888888877766
Q ss_pred HHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHH
Q 010961 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231 (496)
Q Consensus 152 ~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 231 (496)
....++ .. .....+...|..++..+.. .+...-.++. .+ . +...|..+.-.-.. ..-++
T Consensus 441 ~Ia~~l---Pt---~~~rL~p~vYemvLve~L~-~~~~~F~e~i---~~--W--p~~Lys~l~iisa~-------~~q~~ 499 (846)
T KOG2066|consen 441 DIAPYL---PT---GPPRLKPLVYEMVLVEFLA-SDVKGFLELI---KE--W--PGHLYSVLTIISAT-------EPQIK 499 (846)
T ss_pred hhhccC---CC---CCcccCchHHHHHHHHHHH-HHHHHHHHHH---Hh--C--ChhhhhhhHHHhhc-------chHHH
Confidence 544432 22 1122355677777777665 2222222221 11 1 12222222111110 11111
Q ss_pred hcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCc
Q 010961 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269 (496)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 269 (496)
+-.++ ...-..|+..|...+++..|..++-...+++.
T Consensus 500 q~Se~-~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 500 QNSES-TALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hhccc-hhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11111 12233488889999999999999988877553
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.26 E-value=32 Score=39.39 Aligned_cols=304 Identities=12% Similarity=0.046 Sum_probs=159.1
Q ss_pred HHHHHHHccchHHHHHHHHHHH----HHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHh-cCCCChHHHHHHHHHHHhc
Q 010961 177 TVIGACADLAALEYGKQIHSHI----LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM-MKEPDDFCLSALISGYANC 251 (496)
Q Consensus 177 ~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~ 251 (496)
.+..+-.+.+.+..|...++.- .+.. .....|..+...|...+++|.+.-+... ..+|+ ...-|......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhh
Confidence 4445666778888888888773 2211 1233455566688888999888887773 44444 23345556778
Q ss_pred CChhHHHHHHHhcCCC--C-cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhcccchhhHHHHH
Q 010961 252 GKMNDARRVFDRTTDT--S-SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA-SVLSACSSLGFLEHGKQVH 327 (496)
Q Consensus 252 ~~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~l~~~~~~~~~~~~a~~~~ 327 (496)
|++..|...|+++.+. + ..+++-++......|.++.++-..+-.... ..+....++ .-+.+-.+.++++.....+
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 9999999999998873 3 557888888888888888887766655544 233333333 3344556777777777665
Q ss_pred HHHHHcCCC-chHHHHHHHHHHHHhcCChh--hHHHHHHhcc-------------cCchhhHHHHHHHHHhcCCHHHHHH
Q 010961 328 GHACKVGVI-DDVIVASALLDTYSKRGMPS--DACKLFSELK-------------VYDTILLNTMITVYSSCGRIEDAKH 391 (496)
Q Consensus 328 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (496)
. ..+.. ..... +.....+..+-+ .-.+..+.+. ..-...|..++....-.. .+...+
T Consensus 1542 ~---~~n~e~w~~~~---~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~ 1614 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVES---IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIE 1614 (2382)
T ss_pred h---cccccchhHHH---HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5 11111 11110 222222221111 1111221111 000123444444433222 112222
Q ss_pred HHhhCCCC-----ChhhHHHHHHHHHhCCChhhHHHHHHH-HHhCCCCC-----CHHHHHHHHHHHhccCchhhHHHHHH
Q 010961 392 IFRTMPNK-----SLISWNSMIVGLSQNGSPIEALDLFCN-MNKLDLRM-----DKFSLASVISACANISSLELGEQVFA 460 (496)
Q Consensus 392 ~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~-m~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (496)
.+...... +..-|..-+..-....+..+-+--+++ +.....+| -..+|-...+.....|.++.|...+-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 22222211 111222111111111111111111111 22221122 24578888888888888888888777
Q ss_pred HHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhhC
Q 010961 461 RVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496 (496)
Q Consensus 461 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~e 496 (496)
...+.+ . +..+--..+.+...|+...|+.++++
T Consensus 1695 ~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~ 1727 (2382)
T KOG0890|consen 1695 NAKESR-L--PEIVLERAKLLWQTGDELNALSVLQE 1727 (2382)
T ss_pred hhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHH
Confidence 666655 2 23445566777888888888888764
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.47 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.296 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
+|..+..++...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566777777888888888888877766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.38 E-value=21 Score=35.81 Aligned_cols=87 Identities=10% Similarity=0.118 Sum_probs=40.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChh--hHHHHHHHHHh-CCC-----------hhhHHHHHHHHHhCC-----CCC-C
Q 010961 376 MITVYSSCGRIEDAKHIFRTMPNKSLI--SWNSMIVGLSQ-NGS-----------PIEALDLFCNMNKLD-----LRM-D 435 (496)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~-~g~-----------~~~a~~~~~~m~~~~-----~~p-~ 435 (496)
...-+...|++++|..+|+-..+.+.+ ..|.++.-... ... ...|..+.+.....+ +.+ +
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 499 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKN 499 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHH
Confidence 334455677778887777777664332 33333322222 222 222444444433321 112 2
Q ss_pred HHHHHHHHHH-----HhccCchhhHHHHHHHH
Q 010961 436 KFSLASVISA-----CANISSLELGEQVFARV 462 (496)
Q Consensus 436 ~~~~~~l~~~-----~~~~g~~~~a~~~~~~~ 462 (496)
..|+..|+.. +...|+++.|.+.++.+
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3455555543 35677888777665543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.53 Score=23.82 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChHHHHHhhhC
Q 010961 473 ISTSLVDFYCKCGFIKMDEYYLMQ 496 (496)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~e 496 (496)
....+..++...|++++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 344567777788888888877764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.08 E-value=3.4 Score=33.49 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC--HHHHHHHHHHHHccchHHHHHHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD--AFILATVIGACADLAALEYGKQIHSHIL 199 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (496)
.+..+...|.+.|+.++|++.|.++... ...|. ...+..+++.+...+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555556666666666666666665541 22222 2334445555555555555555544443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.59 E-value=8 Score=29.76 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=34.6
Q ss_pred HHhcCChhHHHHHHHhcCC--C----CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010961 248 YANCGKMNDARRVFDRTTD--T----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314 (496)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 314 (496)
..+.|++++|.+.|+.+.. | ...+--.++.+|.+.+++++|...+++.++.....-..-|...+.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3344555555555544433 1 12344456667777777777777777776643222223344444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.90 E-value=17 Score=32.49 Aligned_cols=133 Identities=12% Similarity=0.109 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh--cC----ChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHH
Q 010961 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK--CG----DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261 (496)
Q Consensus 188 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 261 (496)
++....+++.+.+.|+.-+..+|-+....... .. ...++..+++.|++.-+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f---------------------- 135 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF---------------------- 135 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc----------------------
Confidence 45667788888888888777666443332222 12 234566667766641100
Q ss_pred HhcCCCCcchHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcccc--hhhHHHHHHHHHHc
Q 010961 262 DRTTDTSSVMWNSMISGYISNNE----DTEALLLFHKMRRNGVLEDAS--TLASVLSACSSLGF--LEHGKQVHGHACKV 333 (496)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~m~~~g~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~ 333 (496)
+..++-.++..++.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+..... ..++..+++.+.+.
T Consensus 136 --LTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~ 211 (297)
T PF13170_consen 136 --LTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN 211 (297)
T ss_pred --ccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 001122333333322 2222 245666777777777665432 33333333322222 44777888888888
Q ss_pred CCCchHHHHHHHH
Q 010961 334 GVIDDVIVASALL 346 (496)
Q Consensus 334 ~~~~~~~~~~~l~ 346 (496)
|+++....|..+.
T Consensus 212 ~~kik~~~yp~lG 224 (297)
T PF13170_consen 212 GVKIKYMHYPTLG 224 (297)
T ss_pred CCccccccccHHH
Confidence 8887776665554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.85 E-value=6.7 Score=32.14 Aligned_cols=74 Identities=16% Similarity=0.014 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc---CCCchHHHHHHHHHHHHhcCChHHHH
Q 010961 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII---GLDSDQIISTSLVDFYCKCGFIKMDE 491 (496)
Q Consensus 417 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 491 (496)
-+.|.+.|-.+...+.--++.....|..-|. ..|.+++.+++-+..+. +-.+|+.++.+|+..|.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4668888888888775556666666655554 57899999999877653 33678999999999999999999874
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.78 E-value=19 Score=33.08 Aligned_cols=62 Identities=10% Similarity=0.025 Sum_probs=41.2
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHhcCCC-------CcchHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010961 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDT-------SSVMWNSMISGYISNNEDTEALLLFHKMRR 297 (496)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 297 (496)
....+|..+...+.+.|.++.|...+.++... .+...-.-....-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33456667777777777777777777665542 234444455666677888888888877766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.76 E-value=7 Score=37.61 Aligned_cols=101 Identities=15% Similarity=0.045 Sum_probs=58.8
Q ss_pred HHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHH
Q 010961 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427 (496)
Q Consensus 348 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 427 (496)
...+.|+.+.|.++..+ ..+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+....+-...
T Consensus 646 lal~lgrl~iA~~la~e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVE--ANSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred hhhhcCcHHHHHHHHHh--hcchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHH
Confidence 34455666666665543 23455677777777777777777777766543 445555666666666555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 428 NKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 428 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
++.| +-|. ..-++...|+++++.+++..
T Consensus 719 ~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 719 KKQG-KNNL-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred Hhhc-ccch-----HHHHHHHcCCHHHHHHHHHh
Confidence 5554 2222 22345556777777666543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.96 Score=24.40 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
.|..+..++...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666677777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.50 E-value=23 Score=33.61 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=27.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--C---ChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 376 MITVYSSCGRIEDAKHIFRTMPN--K---SLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
+..++.+.|+.++|.+.++++.+ | +......|+.++...+.+.++..++.+-.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44444455555555555555543 2 112344455555555666666555555443
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.43 E-value=9.8 Score=29.29 Aligned_cols=59 Identities=10% Similarity=-0.012 Sum_probs=27.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCC
Q 010961 143 CYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGL 203 (496)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 203 (496)
...+.|++++|.+.|+.+... .+..| ....-..++.++...++++.|...++..++..+
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~r--yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTR--YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 334455555555555555543 11111 122333444555555555555555555555443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.33 E-value=6.6 Score=34.28 Aligned_cols=75 Identities=8% Similarity=0.028 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHH-----cCCCchHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-----VGVIDDVIVASAL 345 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 345 (496)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|.+.+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34444444444555555555555544432 33444455555555555555555555444433 3555555444433
Q ss_pred H
Q 010961 346 L 346 (496)
Q Consensus 346 ~ 346 (496)
.
T Consensus 234 ~ 234 (280)
T COG3629 234 E 234 (280)
T ss_pred H
Confidence 3
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.29 E-value=4.7 Score=28.32 Aligned_cols=63 Identities=8% Similarity=0.058 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347 (496)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (496)
+.-++.+-++.+....+.|++......+++|.+.+++..|..+++-+..+. ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 445666677777777888999999999999999999999999988776432 113335555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=88.28 E-value=7.2 Score=27.62 Aligned_cols=81 Identities=11% Similarity=0.111 Sum_probs=52.5
Q ss_pred HHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHH
Q 010961 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423 (496)
Q Consensus 344 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 423 (496)
++.+.+...++.+++..+.+ +..+...|++++|..+.+...-||...|-.|- -.+.|-.+++..-
T Consensus 26 tIAdwL~~~~~~~E~v~lIR-------------lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~r 90 (115)
T TIGR02508 26 TIADWLHLKGESEEAVQLIR-------------LSSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESR 90 (115)
T ss_pred HHHHHHhcCCchHHHHHHHH-------------HHHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHH
Confidence 34444444444455555444 34567788888888888888778888876553 3466777777777
Q ss_pred HHHHHhCCCCCCHHHHH
Q 010961 424 FCNMNKLDLRMDKFSLA 440 (496)
Q Consensus 424 ~~~m~~~~~~p~~~~~~ 440 (496)
+-+|...| .|....|.
T Consensus 91 l~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 91 LNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 77787776 55444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.21 E-value=13 Score=30.35 Aligned_cols=83 Identities=10% Similarity=-0.006 Sum_probs=39.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCC-CChhhH-----HHHHHHHHhcCChhHHHHHHhhcCCCCccc--HHHHHHHHHHcCCHH
Q 010961 80 EGFMKLGHKEKSLQLFNVMPQ-KNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIA--WNSMIHCYVRNGFAR 151 (496)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 151 (496)
..+...|++++|..-+++... +.-..+ ..|.+.....|.+++|+..++....++-.. ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 334455556666555555442 211122 223334445555555555555555443221 223334555555555
Q ss_pred HHHHHHHHHHH
Q 010961 152 EAVRLFKELNS 162 (496)
Q Consensus 152 ~a~~~~~~~~~ 162 (496)
+|..-|+....
T Consensus 177 ~Ar~ay~kAl~ 187 (207)
T COG2976 177 EARAAYEKALE 187 (207)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.61 E-value=4.9 Score=28.27 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH-HcCCCchHHHHHHHHH
Q 010961 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVD 479 (496)
Q Consensus 419 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~ 479 (496)
++.+-+..+....+-|++....+.+++|.+.+|+..|.++++-+. +.|. +..+|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 456666677777789999999999999999999999999999776 3332 3445655554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.91 E-value=29 Score=33.03 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHc
Q 010961 284 EDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333 (496)
Q Consensus 284 ~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 333 (496)
+.+..+++..++... |...-...+..+-..|....++.+|.+++..+.++
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 344444444444432 33333444444445555555666666666555544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.73 E-value=1.6 Score=23.63 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 345555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.94 E-value=47 Score=34.51 Aligned_cols=57 Identities=12% Similarity=0.076 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhCCCCChhhH-----HHHHH---HHHhcCCHHHHHHHHhhCCC
Q 010961 44 ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSW-----NAMIE---GFMKLGHKEKSLQLFNVMPQ 100 (496)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~l~~---~~~~~~~~~~a~~~~~~~~~ 100 (496)
+..=+..+....++++|..+-+....|++... ..... -+..+|++++|.+.|+++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 34445666666778888887777766554322 11111 24466788888888888765
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.76 E-value=6.3 Score=28.06 Aligned_cols=60 Identities=8% Similarity=0.073 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347 (496)
Q Consensus 287 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (496)
+..+-++.+....+.|++......+++|.+.+++..|..+++-+..+- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 556666777777788888888888888888888888888888776542 122225555553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.41 E-value=1.9 Score=23.29 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777778888888888777766
|
... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.36 E-value=79 Score=36.60 Aligned_cols=156 Identities=10% Similarity=0.026 Sum_probs=97.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC----CC--ChhhHHHHHHHHHhcCChhHHHHHHhh-cCCCCcccHHHHHHHHHHcCC
Q 010961 77 AMIEGFMKLGHKEKSLQLFNVMP----QK--NDFSWNMLISGFAKAGELKTARTLFND-MPRRNAIAWNSMIHCYVRNGF 149 (496)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~ 149 (496)
.+..+-.+.+.+.+|...+++-. +. ...-|..+...|+..+++|....+... ...|+ ...-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 45556667888999999998842 21 223455555688888998888877763 33332 3334555677899
Q ss_pred HHHHHHHHHHHHHchhccCCcC-HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhH-HHHHHHHHHhcCChhhHH
Q 010961 150 AREAVRLFKELNSDLVERLQCD-AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL-GSSLVNLYGKCGDFNSAN 227 (496)
Q Consensus 150 ~~~a~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~ 227 (496)
|+.|...|+.+.+ ..|+ ..+++-++......|.++...-..+-....- .+.... ++.=+.+--+.+++|...
T Consensus 1465 ~~da~~Cye~~~q-----~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1465 WADAAACYERLIQ-----KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HHHHHHHHHHhhc-----CCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 9999999999987 4454 6677777777777777776666444433321 112222 222333445677777777
Q ss_pred HHHHhcCCCChHHHHHH
Q 010961 228 QVLNMMKEPDDFCLSAL 244 (496)
Q Consensus 228 ~~~~~~~~~~~~~~~~l 244 (496)
..+. +.+..+|...
T Consensus 1539 ~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWSVE 1552 (2382)
T ss_pred hhhh---cccccchhHH
Confidence 7665 4444444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.99 E-value=6.8 Score=27.91 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480 (496)
Q Consensus 419 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (496)
+..+-+..+....+-|++....+.+++|.+.+|+..|.++++-+...-- +...+|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHHH
Confidence 4555566666677888999999999999999999999999987764321 223366665543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.71 E-value=5.8 Score=32.50 Aligned_cols=72 Identities=19% Similarity=0.057 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHc---CCCchHHHHHHHHHHHHhcCChhhH
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV---GVIDDVIVASALLDTYSKRGMPSDA 358 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 358 (496)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555555554444444444443333 44555565555555442 2234555555555555555555544
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=84.66 E-value=26 Score=30.56 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=46.1
Q ss_pred hcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhcccchh-hHH
Q 010961 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF----HKMRRNGVLEDASTLASVLSACSSLGFLE-HGK 324 (496)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~g~~~~~~~~~~l~~~~~~~~~~~-~a~ 324 (496)
+.+++++|++++.. -...+.+.|+...|.++- +-..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665542 234566777766655543 33344566666666555555544332211 233
Q ss_pred HHHHHHHH---cC--CCchHHHHHHHHHHHHhcCChhhHHHHHH
Q 010961 325 QVHGHACK---VG--VIDDVIVASALLDTYSKRGMPSDACKLFS 363 (496)
Q Consensus 325 ~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 363 (496)
.+.+.+.+ .| ..-++.....+...|.+.|++.+|+..|-
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 33333332 11 11244555555566666666665555544
|
; PDB: 3LKU_E 2WPV_G. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=36 Score=32.11 Aligned_cols=129 Identities=12% Similarity=0.029 Sum_probs=57.3
Q ss_pred ccH--HHHHHHHHHc-----CCHHHHHHHHHHHHHchhccCCcCHH-HHHHHHHHHH---------ccchHHHHHHHHHH
Q 010961 135 IAW--NSMIHCYVRN-----GFAREAVRLFKELNSDLVERLQCDAF-ILATVIGACA---------DLAALEYGKQIHSH 197 (496)
Q Consensus 135 ~~~--~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~ 197 (496)
..| ...+.+.... ...+.|+.+|.+.... +...|+-. .|..+..++. ...+...|.+..+.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~--~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNK--SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc--ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 455 5555554442 1245666677776632 23555432 2222222111 11233344445555
Q ss_pred HHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC-hHHHHHHHHHHHhcCChhHHHHHHHhcCC
Q 010961 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD-DFCLSALISGYANCGKMNDARRVFDRTTD 266 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (496)
.++.+.. |......+..+....++++.+...|++... || ..+|........-.|+.++|.+.+++..+
T Consensus 330 Aveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 330 VSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5554433 444444444444555556666666655543 33 22333333333344444444444444333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.46 E-value=2.3 Score=22.81 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
|..+...|...|++++|.+.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.10 E-value=2.6 Score=23.99 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567778888888888888888877755
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.09 E-value=3 Score=24.46 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=14.0
Q ss_pred HHHHHhccCchhhHHHHHHHHHHc
Q 010961 442 VISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
|..+|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666655543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF14669 Asp_Glu_race_2: Putative aspartate racemase | Back alignment and domain information |
|---|
Probab=83.52 E-value=22 Score=28.82 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=36.0
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHcCC--------------CchHHHHHHHHHHHHhcCChHHHHHhhhC
Q 010961 441 SVISACANISSLELGEQVFARVTIIGL--------------DSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496 (496)
Q Consensus 441 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~e 496 (496)
+++..|.+.-++.++.++++.|.+..+ .+--.+.|.-.+.+.+.|.++.|..+++|
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 344456666666777776666654322 22234566677788888888888888764
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.46 E-value=2.5 Score=24.01 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666677777777777777666543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.02 E-value=55 Score=32.96 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=41.2
Q ss_pred HHHHHHhcCChhhHHHHHHh--cCCCChHHHHHHHHHHHhcCChhHHH-HHHHhcC-CCCcchHHHHHHHHHh---CCCH
Q 010961 213 LVNLYGKCGDFNSANQVLNM--MKEPDDFCLSALISGYANCGKMNDAR-RVFDRTT-DTSSVMWNSMISGYIS---NNED 285 (496)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~-~~~~~~~~~l~~~~~~---~~~~ 285 (496)
....+.-.|+++.|.+++-. ....+.+.+...+..|.-.+-.+... .++..-. .+.+..+..||..|.+ ..++
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~ 343 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDP 343 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-H
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCH
Confidence 34455667999999999888 33355555555554443222222211 1111111 1223567777877765 4678
Q ss_pred HHHHHHHHHHHHCC
Q 010961 286 TEALLLFHKMRRNG 299 (496)
Q Consensus 286 ~~a~~~~~~m~~~g 299 (496)
.+|+++|-.+....
T Consensus 344 ~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 344 REALQYLYLICLFK 357 (613)
T ss_dssp HHHHHHHHGGGGS-
T ss_pred HHHHHHHHHHHHcC
Confidence 88888887766543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=83.02 E-value=13 Score=32.12 Aligned_cols=54 Identities=15% Similarity=0.039 Sum_probs=22.2
Q ss_pred HHHHHhCCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 010961 408 IVGLSQNGSPIEALDLFCNMNKL--DLRMDKFSLASVISACANISSLELGEQVFARVT 463 (496)
Q Consensus 408 ~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (496)
|.+++..+++.+++...-+--+. .++|. +...-|-.|.+.|.+....++-....
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444555555544443332221 12222 22333333445555555555444333
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.87 E-value=45 Score=31.84 Aligned_cols=166 Identities=13% Similarity=0.125 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAG 117 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 117 (496)
...+++..+.......-...+-.+|.. .+...|..++++|... ..+.-..+++++.+ .|+..-..|...|-+ +
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-i 145 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-I 145 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-h
Confidence 344566666666555555555555554 4556777788888777 55666777776655 344444445555544 6
Q ss_pred ChhHHHHHHhhcCCC------Cc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchH
Q 010961 118 ELKTARTLFNDMPRR------NA---IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188 (496)
Q Consensus 118 ~~~~a~~~~~~~~~~------~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 188 (496)
+.+.+..+|..+..+ +. ..|..|... -..+.+..+.+..++... .|...-...+..+-.-|....++
T Consensus 146 k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~--lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 146 KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTK--LGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHh--hccchHHHHHHHHHHHhccccCH
Confidence 667776666665421 11 134433321 134566666666666554 33444455566666677777788
Q ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 189 EYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 189 ~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
+++.+++..+.+..-+ |...-..++.
T Consensus 222 ~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 222 TEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred HHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 8888888777665433 4444444443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=82.87 E-value=57 Score=33.01 Aligned_cols=118 Identities=10% Similarity=0.032 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCCCChhh---HHHHHHHHHhcCCHHHHHHHHhhCCC-CChhhH-HHHHHHHHhcC
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFS---WNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSW-NMLISGFAKAG 117 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~-~~l~~~~~~~~ 117 (496)
.|..... ..+.|++..+.++...+....... |..+...+ ....+++...++++-.. |-.... ...+..+.+.+
T Consensus 36 ~f~~A~~-a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~ 113 (644)
T PRK11619 36 RYQQIKQ-AWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDL-MNQPAVQVTNFIRANPTLPPARSLQSRFVNELARRE 113 (644)
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcc
Confidence 4444444 447788888888887775422222 33332221 23357777777777654 433222 33344566778
Q ss_pred ChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010961 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163 (496)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 163 (496)
+++...+++..- ..+.........+....|+.++|.+....+-..
T Consensus 114 ~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 114 DWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred CHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 888888844232 345555677788888899988888777777653
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.84 E-value=20 Score=27.80 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=26.9
Q ss_pred cCChhhHHHHHHhcc--cC-chhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010961 352 RGMPSDACKLFSELK--VY-DTILLNTMITVYSSCGRIEDAKHIFRTMPN 398 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 398 (496)
.++++++..+++.+. .| ....-..-...+...|++++|..+|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 556666666666655 23 222333334455666777777777777665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=82.07 E-value=10 Score=26.16 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHH
Q 010961 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258 (496)
Q Consensus 191 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 258 (496)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. ..+..|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44667777777743 44444444443345678888888888888 66667777777777666655443
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=81.61 E-value=16 Score=25.94 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=31.0
Q ss_pred HHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
..+...|++++|..+.+.+..||...|-.|-. .+.|..+++..-+.+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34556677777777777776667666655543 355655666655555555
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.33 E-value=30 Score=28.82 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=17.0
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRN 298 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 298 (496)
.+|--+...+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35555556666666666666666655443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.09 E-value=31 Score=28.81 Aligned_cols=159 Identities=18% Similarity=0.051 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhcccchhhHHHHHHHHHHcCC--CchHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS-ACSSLGFLEHGKQVHGHACKVGV--IDDVIVASALLD 347 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 347 (496)
.+......+...+++..+...+.........+. ........ .+...|+++.+...+........ ......+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence 333344444444455555555555544322221 11111111 44555556666655555543211 112222333333
Q ss_pred HHHhcCChhhHHHHHHhcc---cC-chhhHHHHHHHHHhcCCHHHHHHHHhhCCCC--C-hhhHHHHHHHHHhCCChhhH
Q 010961 348 TYSKRGMPSDACKLFSELK---VY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNK--S-LISWNSMIVGLSQNGSPIEA 420 (496)
Q Consensus 348 ~~~~~~~~~~a~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a 420 (496)
.+...++.+.+...+.... +. ....+..+...+...++++.+...+...... + ...+..+...+...+..+.+
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 3455566666666666655 22 2345666666666666777777777666552 2 23444444555566678888
Q ss_pred HHHHHHHHhC
Q 010961 421 LDLFCNMNKL 430 (496)
Q Consensus 421 ~~~~~~m~~~ 430 (496)
...+.+....
T Consensus 256 ~~~~~~~~~~ 265 (291)
T COG0457 256 LEALEKALEL 265 (291)
T ss_pred HHHHHHHHHh
Confidence 8888877765
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.47 E-value=47 Score=30.47 Aligned_cols=62 Identities=13% Similarity=-0.005 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHHhcCChhhHHHHHHhcccC-------chhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010961 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVY-------DTILLNTMITVYSSCGRIEDAKHIFRTMPN 398 (496)
Q Consensus 337 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 398 (496)
....++..+...+.+.|.++.|...+..+... .+.....-++.+...|+.++|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556777778888888888888877777632 344555566677777777777777765543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.11 E-value=38 Score=29.22 Aligned_cols=149 Identities=10% Similarity=0.123 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHH---cCCC--cchhHHHHHHHHHHhcCC
Q 010961 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV---NGLD--FDSVLGSSLVNLYGKCGD 222 (496)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~~~ 222 (496)
..+++|+.-|++..+..+..-.-.-.....++....+.+++++....+.+++. +.+. -+....|++++......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35566666666655521011111122344455566666666666665555542 1111 123345555555555555
Q ss_pred hhhHHHHHHhcCC-----CChH----HHHHHHHHHHhcCChhHHHHHHHhcCC------------CC---cchHHHHHHH
Q 010961 223 FNSANQVLNMMKE-----PDDF----CLSALISGYANCGKMNDARRVFDRTTD------------TS---SVMWNSMISG 278 (496)
Q Consensus 223 ~~~a~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~---~~~~~~l~~~ 278 (496)
.+-...+++.-.+ .+.. |-..+...|...+.+.+..+++.++.+ .+ ...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 4444444433221 1111 223344445555555555544444322 00 1244444555
Q ss_pred HHhCCCHHHHHHHHHHHH
Q 010961 279 YISNNEDTEALLLFHKMR 296 (496)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~ 296 (496)
|....+-.+...+|++..
T Consensus 201 YT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhcccHHHHHHHHHHH
Confidence 555555555555555443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.04 E-value=9.9 Score=31.53 Aligned_cols=55 Identities=20% Similarity=0.142 Sum_probs=29.8
Q ss_pred HHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 010961 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
++.+.+.+...++.....+-++..+. +...-..++..++-.|++++|..-++..-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 34444445555555555554444332 44455566666666777777665555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 1e-07
Identities = 71/469 (15%), Positives = 136/469 (28%), Gaps = 107/469 (22%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+A L C ++ + + +L NS + L ++ + +
Sbjct: 166 VA--LDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQ-LFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
+ S A + +K E L L NV N + A L + L
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNV--------QN---AKAWNAFNLS-CKILL 270
Query: 127 --NDMPRRNAIAWNSMIHCYV---RNGFA-REAVRLF-KELN---SDL-VERLQCDAFIL 175
+ ++ + H + E L K L+ DL E L + L
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 176 ATVIGA-CAD-LAALEYGKQIHSHILVNGLDFDSVLGSSLVNL--------YGKCGDFN- 224
+ +I D LA + K VN +++ SSL L + + F
Sbjct: 331 S-IIAESIRDGLATWDNWKH------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 225 SAN---QVLNM----MKEPDD------FCLSALISGYANCGK--MNDARRVFDRTTDTSS 269
SA+ +L++ + + D +L+ + +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 270 VMWNSMISGY-ISNNEDTEALLL------------FHKMRRNGVLEDASTLASVLSACSS 316
+ S++ Y I D++ L+ H ++ E + V
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVF---LD 499
Query: 317 LGFLEHGKQVH-GHACKV--GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
FLE K H A +++ + L Y +D Y+ L+
Sbjct: 500 FRFLE-QKIRHDSTAWNASGSILNTLQQ----LKFYKPYICDNDP--------KYER-LV 545
Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI--EA 420
N ++ +++ + L+ + L I EA
Sbjct: 546 NAILDFLPKIE-----ENLICS-KYTDLLR-----IALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 56/395 (14%), Positives = 115/395 (29%), Gaps = 119/395 (30%)
Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHS-----HIL-----VNGLD--FDSV 208
D++ + DAF+ C D+ + K I S HI+ V+G F ++
Sbjct: 18 YKDILSVFE-DAFVDNF---DCKDV--QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPD-DFCLSALISGYANCGKMNDARRVFDRTTDT 267
L + + + + + F +S + + + +
Sbjct: 72 L------SKQE----EMVQKFVEEVLRINYKFLMSPIKTEQ------RQPSMMTRMYIEQ 115
Query: 268 SSVMWNS--MISGY-ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
++N + + Y +S + L R +LE ++ LG GK
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKL-------RQALLELRPAKNVLI--DGVLGS---GK 163
Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA-------C-----------KLFSELK 366
+ L + M C KL ++
Sbjct: 164 TW-------------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 367 VYDTILLNTMITVYSSCGRIEDA-KHIFRTMPNKSLISWNSMIVGLS--QNGSPIEALDL 423
T + + I+ + + ++ P + N ++V L QN A +L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-----NCLLV-LLNVQNAKAWNAFNL 264
Query: 424 FC----------NMNKLD------LRMDKFSLA-------SVISACANISSLELGEQVFA 460
C + L + +D S+ S++ + +L +V
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 461 ----RVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
R++II ++T D + K+
Sbjct: 325 TNPRRLSIIAESIRDGLATW--DNWKHVNCDKLTT 357
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.3 bits (126), Expect = 2e-07
Identities = 29/253 (11%), Positives = 74/253 (29%), Gaps = 24/253 (9%)
Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
+ R + + ++G + R+ LA +L
Sbjct: 56 EFKALTRRLQVEPRLLSKQMAGCLE-----------DCTRQAPESPWEEQLARLLQEAPG 104
Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-------VYD 369
L+ + G + + A A L +
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEAL-DLF 424
+ N ++ ++ G ++ ++ + + L +S+ + + + + +
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCK 483
M++ L++ A ++S + L+ +V ++ L S L D Y K
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
Query: 484 CGFIKMDEYYLMQ 496
G + + +L
Sbjct: 285 DGRVSYPKLHLPL 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.5 bits (111), Expect = 9e-06
Identities = 15/142 (10%), Positives = 40/142 (28%), Gaps = 8/142 (5%)
Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-------VMWNSMISGYISNNEDTE 287
L A ++ A + M+N+++ G+ E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVHGHACKVGVIDDVIVASALL 346
+ + ++ G+ D + A+ L ++ + G+ + + LL
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 347 DTYSKRGMPSDACKLFSELKVY 368
+ + K+ +
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLP 265
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.2 bits (105), Expect = 5e-05
Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 74 SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS-------WNMLISGFAKAGELKTARTLF 126
A + + + L V + +N ++ G+A+ G K +
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 127 NDMPRR----NAIAWNSMIHCYVRNGFAREAVR 155
+ + +++ + + C R +
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 496 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.51 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.42 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.37 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.24 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.23 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.17 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.14 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.98 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.97 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.96 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.95 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.95 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.94 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.92 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.91 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.91 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.9 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.88 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.87 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.83 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.82 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.79 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.78 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.75 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.73 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.69 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.66 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.63 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.62 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.61 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.55 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.53 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.53 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.52 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.5 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.49 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.49 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.48 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.46 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.45 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.42 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.41 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.39 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.39 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.39 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.38 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.37 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.34 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.27 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.27 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.26 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.25 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.24 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.23 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.23 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.22 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.19 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.19 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.18 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.18 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.18 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.16 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.16 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 98.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.13 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.13 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.13 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.1 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.04 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.03 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.02 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.99 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.98 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.98 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.96 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.93 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.9 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.9 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.9 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.9 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.89 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.83 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.8 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.77 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.75 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.75 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.71 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.71 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.69 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.69 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.66 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.66 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.61 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.54 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.48 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.4 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.4 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.4 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.39 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.33 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.29 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.26 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.18 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.14 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.99 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.88 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.72 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.71 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.69 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.65 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.41 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.4 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.37 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.32 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.19 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.16 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.06 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.03 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.01 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.0 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.8 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.7 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.6 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.4 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.23 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.05 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.01 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 94.81 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 94.47 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 94.45 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.09 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.99 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.83 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.13 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.0 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.66 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.36 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.08 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.95 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.7 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.29 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 90.26 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.24 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.03 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.5 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.47 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.93 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.83 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.47 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 88.18 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.66 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.17 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.09 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.08 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 85.65 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.51 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.99 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.93 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.8 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.7 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 82.03 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 82.0 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 81.74 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.25 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=334.45 Aligned_cols=445 Identities=10% Similarity=-0.001 Sum_probs=381.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHhcCC
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--QKNDFSWNMLISGFAKAGE 118 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 118 (496)
.++.++..|.+.|++++|+.+|+++.. |+..++..++.+|.+.|++++|..+|+++. .++..+++.++.+|.+.|+
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 165 (597)
T 2xpi_A 86 YLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYD 165 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhh
Confidence 789999999999999999999998864 777888999999999999999999999985 4788899999999999999
Q ss_pred hhHHHHHHhhcCCC-------------------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHH
Q 010961 119 LKTARTLFNDMPRR-------------------NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATV 178 (496)
Q Consensus 119 ~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l 178 (496)
+++|.++|+++... +..+|+.++.+|.+.|++++|++.|+++.+ ..| +...+..+
T Consensus 166 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~l 240 (597)
T 2xpi_A 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM-----VDAKCYEAFDQL 240 (597)
T ss_dssp HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHH
T ss_pred HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCchhhHHHHHH
Confidence 99999999965433 367899999999999999999999999987 334 34455555
Q ss_pred HHHHHccchHHH--HHHH-HHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CChHHHHHHHHHHHhcCC
Q 010961 179 IGACADLAALEY--GKQI-HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGK 253 (496)
Q Consensus 179 l~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 253 (496)
...+...+..+. +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+ ++..+|..++.+|.+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 544443333322 2222 55555556666667778888899999999999999999987 889999999999999999
Q ss_pred hhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHH
Q 010961 254 MNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330 (496)
Q Consensus 254 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 330 (496)
+++|.++|+++.+ .+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++
T Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999998764 467789999999999999999999999998653 567889999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhH
Q 010961 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISW 404 (496)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~ 404 (496)
.+.. +.+..+++.++.+|.+.|++++|.++|+++. +.+..+|..++.+|.+.|++++|.++|+++.+ .+..+|
T Consensus 400 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 478 (597)
T 2xpi_A 400 STMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478 (597)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 8864 4567789999999999999999999999887 55788999999999999999999999999864 467899
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 405 NSMIVGLSQNGSPIEALDLFCNMNKL----DLRMD--KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 405 ~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|...++++.+.+ +.+..++..++
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 99999999999999999999999876 66787 7899999999999999999999999998876 34789999999
Q ss_pred HHHHhcCChHHHHHhhh
Q 010961 479 DFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 479 ~~~~~~g~~~~A~~~~~ 495 (496)
.+|.+.|++++|.+.++
T Consensus 558 ~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 99999999999999876
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=327.02 Aligned_cols=468 Identities=13% Similarity=0.042 Sum_probs=396.3
Q ss_pred cchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCC--CCChhhHHHHHH
Q 010961 3 TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIE 80 (496)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~ 80 (496)
++...+..++..|.+.|++++|..+++.+.+.. |+.. ++..++.+|.+.|++++|+.+|+.+. .++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPN-DAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHH-HHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCch-HHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 456778899999999999999999999999765 5556 88899999999999999999999995 478899999999
Q ss_pred HHHhcCCHHHHHHHHhhCCCC-------------------ChhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQK-------------------NDFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWN 138 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~ 138 (496)
+|.+.|++++|+++|+++... +..+|+.++.+|.+.|++++|.++|+++.+ | +...+.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999975543 378999999999999999999999999975 3 334555
Q ss_pred HHHHHHHHcCCHHHHHH--H-HHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 139 SMIHCYVRNGFAREAVR--L-FKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
.+...+...+..+.+.. + +..+.. .+..+...+|+.++..|.+.|++++|.++++++.+. +++..+++.++.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSK---EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHG---GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCccccc---chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 55554443333222211 1 344433 344556667777888899999999999999998876 578899999999
Q ss_pred HHHhcCChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHH
Q 010961 216 LYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEAL 289 (496)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 289 (496)
.|.+.|++++|..+|+++.+ .+..++..++.++.+.|++++|.++++++.+ .+..+|+.++..|.+.|++++|.
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999863 4677899999999999999999999998754 45778999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---
Q 010961 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--- 366 (496)
Q Consensus 290 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--- 366 (496)
++|+++.+.. +.+..++..++..+.+.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+++.
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998753 4567899999999999999999999999998875 4577889999999999999999999999987
Q ss_pred cCchhhHHHHHHHHHhcCCHHHHHHHHhhCC--------CCC--hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH
Q 010961 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMP--------NKS--LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436 (496)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 436 (496)
+.++.+|..++..|.+.|++++|.++|+++. .|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 550 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDA 550 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh
Confidence 5678899999999999999999999999874 344 6789999999999999999999999999875 5588
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482 (496)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (496)
.+|..+..+|.+.|++++|.+.++++.+.... +...+..|..+|.
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 99999999999999999999999999886532 5667777766653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-27 Score=219.96 Aligned_cols=365 Identities=12% Similarity=0.027 Sum_probs=230.6
Q ss_pred HHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHH
Q 010961 113 FAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189 (496)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 189 (496)
+.+.|++++|.+.++.+.+ | +...+..+...+...|++++|...++...+. .+.+..++..+..++...|+++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCCCHH
Confidence 3344444444444444331 2 2223334444444455555555555444441 2233444555555555555555
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC-hHHHHHHHHHHHhcCChhHHHHHHHhcCC
Q 010961 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD-DFCLSALISGYANCGKMNDARRVFDRTTD 266 (496)
Q Consensus 190 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (496)
+|...++++.+..+. +...+..+..++...|++++|...|+++.+ |+ ...+..+...+...|++++|.+.|+++.+
T Consensus 85 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555443221 333455555555555555555555555442 22 23444455555555666666655555443
Q ss_pred --C-CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHH
Q 010961 267 --T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343 (496)
Q Consensus 267 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (496)
| +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+.+..+.. +.+..++.
T Consensus 164 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 2 24567777777777777777777777777643 3345666677777777777888877777777654 33466677
Q ss_pred HHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCh
Q 010961 344 ALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSP 417 (496)
Q Consensus 344 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 417 (496)
.+..++...|++++|.+.|+++. +.++.++..+...+.+.|++++|...|+++.+ .+..++..+...+...|++
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 77777888888888888877766 33456777778888888888888888877654 4667888888889999999
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 418 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
++|.+.++++.+.. +.+..++..+..++.+.|++++|...++++.+... .+...+..+...+.+.|+
T Consensus 322 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 322 EEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHccC
Confidence 99999999888752 44677888889999999999999999998876432 245777777777766653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=240.37 Aligned_cols=189 Identities=14% Similarity=0.160 Sum_probs=169.3
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc---------chhhHHHHHHHHHHcCCCchHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG---------FLEHGKQVHGHACKVGVIDDVI 340 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 340 (496)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+ .++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578889999999999999999999999999999999999999998654 3678999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhH
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 420 (496)
+|+++|.+|++.|++++|.++|++|.. .-..||..+|+++|.+|++.|++++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~---------------------------~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKA---------------------------FGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------------TTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------------cCCCCccceehHHHHHHHHCCCHHHH
Confidence 999999999999999999988887642 22358999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 421 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...+
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999887643
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-27 Score=218.71 Aligned_cols=365 Identities=12% Similarity=0.052 Sum_probs=210.2
Q ss_pred HHHHHhcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhH
Q 010961 48 LQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKT 121 (496)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 121 (496)
...+.+.|++++|++.++.+.+ | +...+..+...+.+.|++++|...++...+ .+..+|..+...+.+.|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 4445566666666666655542 2 334445555555666666666666655443 234455555555666666666
Q ss_pred HHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCH-HHHHHHHHHHHccchHHHHHHHHHH
Q 010961 122 ARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA-FILATVIGACADLAALEYGKQIHSH 197 (496)
Q Consensus 122 a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~ 197 (496)
|.+.|+++.+ | +..+|..+..++.+.|++++|++.|+++.+ ..|+. ..+..+...+...|++++|.+.+++
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-----YNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-----HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6665555542 2 233455555555555666666665555554 22332 2333444445555555555555555
Q ss_pred HHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHH
Q 010961 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 277 (496)
+.+..+. +..++..+...+...|++++|...|+++.+.+ ..+...|..+..
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------p~~~~~~~~lg~ 211 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD----------------------------PNFLDAYINLGN 211 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------------CCcHHHHHHHHH
Confidence 5544322 33444555555555555555555555443210 012334555555
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhh
Q 010961 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357 (496)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (496)
.+...|++++|+..+++..... +.+..++..+...+...|++++|...++.+.+.+ +.++.++..+..++...|++++
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666666555432 2234555556666666666666666666666543 2334456666666666666666
Q ss_pred HHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCC
Q 010961 358 ACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431 (496)
Q Consensus 358 a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 431 (496)
|.+.|+++. +.+..++..+...+.+.|++++|...++++.+ | +..++..+...|.+.|++++|...++++.+.
T Consensus 290 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~- 368 (388)
T 1w3b_A 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI- 368 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 666666655 44555666677777777777777777777664 3 4567888889999999999999999998875
Q ss_pred CCC-CHHHHHHHHHHHhccC
Q 010961 432 LRM-DKFSLASVISACANIS 450 (496)
Q Consensus 432 ~~p-~~~~~~~l~~~~~~~g 450 (496)
.| +...|..+...+...|
T Consensus 369 -~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 369 -SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp -CTTCHHHHHHHHHHHHHTC
T ss_pred -CCCCHHHHHhHHHHHHHcc
Confidence 44 4566666666655444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=233.56 Aligned_cols=188 Identities=13% Similarity=0.121 Sum_probs=168.5
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccc---------hHHHHHHHHHHHHHcCCCc
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA---------ALEYGKQIHSHILVNGLDF 205 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~ 205 (496)
..++.+|++|++.|++++|+++|++|.+ .|++||..||++||.+|++.+ .++.|.++|++|.+.|+.|
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~---~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARR---NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHH---HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 4578889999999999999999999999 689999999999999998654 5788999999999999999
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCH
Q 010961 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285 (496)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (496)
|..+|+++|.+|++.|++++|.++|++|.+.+ ..||..+|+.+|.+|++.|++
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---------------------------~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFG---------------------------IQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------CCCCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCccceehHHHHHHHHCCCH
Confidence 99999999999999999999999999887533 345588889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (496)
++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.+++++|.+.|..|+..||+.++..++..
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999998888753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=210.03 Aligned_cols=244 Identities=12% Similarity=0.037 Sum_probs=170.5
Q ss_pred cCChhhHHHHHHhcCC----------------C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHH
Q 010961 220 CGDFNSANQVLNMMKE----------------P-DDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYI 280 (496)
Q Consensus 220 ~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~ 280 (496)
.|++++|...++++.+ | +...+..+...+...|++++|...|+++.+ |+...+..+...+.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~ 281 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMA 281 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHH
Confidence 6777777777776543 1 234566677777777788887777776543 33556667777777
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHH
Q 010961 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360 (496)
Q Consensus 281 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 360 (496)
..|++++|...++++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...+...|++++|..
T Consensus 282 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777777653 3455666777777777777788887777777654 3345566777777777777777777
Q ss_pred HHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C------hhhHHHHHHHHHh---CCChhhHHHHHH
Q 010961 361 LFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-S------LISWNSMIVGLSQ---NGSPIEALDLFC 425 (496)
Q Consensus 361 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~------~~~~~~l~~~~~~---~g~~~~a~~~~~ 425 (496)
.++++. +.++..+..+...+...|++++|...++++.+ | + ..++..+...+.. .|++++|...++
T Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 439 (514)
T 2gw1_A 360 LFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439 (514)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 777765 34566777777777777777777777777653 1 1 2267777777777 777777877777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 426 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
++.+.. +.+..++..+...+.+.|++++|...++.+.+..
T Consensus 440 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 440 KASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 777652 3456677777777777778888877777777654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-24 Score=207.66 Aligned_cols=421 Identities=10% Similarity=-0.039 Sum_probs=281.4
Q ss_pred hhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHH
Q 010961 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGF 82 (496)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 82 (496)
..+......+...|++++|...|+.+++.. |+.. ++..+..+|.+.|++++|+..|+++.+ .+..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPV-FYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHH-HHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 344555566666666666666666666665 3433 666666666666666666666665543 2345566666666
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC----CCcccHHHHHHHHHHcCCHHHHHH
Q 010961 83 MKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVR 155 (496)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~ 155 (496)
.+.|++++|...|+++.. ++......++..+........+.+.+..+.. ++...+..-...............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 666666666666665543 2223333333333332222222222222211 111111111111111111111111
Q ss_pred HHHHHHHchhccCC--------cC-HHHHHHHHHHHHc---cchHHHHHHHHHHHHH-----cCC--------CcchhHH
Q 010961 156 LFKELNSDLVERLQ--------CD-AFILATVIGACAD---LAALEYGKQIHSHILV-----NGL--------DFDSVLG 210 (496)
Q Consensus 156 ~~~~~~~~~~~~~~--------p~-~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~ 210 (496)
+...+.. .... |+ ...+......+.. .|+++.|...++++.+ ... +.+..++
T Consensus 164 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 164 MASFFGI---FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHTT---SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred HHHHHhh---cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111 0111 11 3444444444444 8999999999999988 311 2245677
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCC--CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCH
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNED 285 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 285 (496)
..+...+...|++++|...++++.+ |+...+..+...+...|++++|...++++.+ .+...|..+...+...|++
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 8888999999999999999998763 5577888899999999999999999998765 3466888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 365 (496)
++|+..+++..+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+...+...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998864 4456788888899999999999999999998864 445678888999999999999999999988
Q ss_pred c---cCc------hhhHHHHHHHHHh---cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 366 K---VYD------TILLNTMITVYSS---CGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 366 ~---~~~------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
. +.+ ...+..+...+.. .|++++|...++++.+ .+..++..+...|.+.|++++|...+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 7 222 2388889999999 9999999999998764 35678889999999999999999999999886
Q ss_pred CCCCCH
Q 010961 431 DLRMDK 436 (496)
Q Consensus 431 ~~~p~~ 436 (496)
.|+.
T Consensus 479 --~~~~ 482 (514)
T 2gw1_A 479 --ARTM 482 (514)
T ss_dssp --CSSH
T ss_pred --cccc
Confidence 4554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-23 Score=199.31 Aligned_cols=414 Identities=11% Similarity=0.064 Sum_probs=257.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhc
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKA 116 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 116 (496)
.+..+...+.+.|++++|+..|+++.+ .+..+|..+..++.+.|++++|++.++++.+ .+..++..+..++...
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 566777777777888888877777654 3566777777777777888888877777654 3456677777777777
Q ss_pred CChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHch---hccCCcCHHHHHHHHHHHHccchHHHHHH
Q 010961 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL---VERLQCDAFILATVIGACADLAALEYGKQ 193 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 193 (496)
|++++|...|+.+. .+....+..+..+...+...+|...++++.... .....|+...... +....+.+.+..
T Consensus 107 g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChHHHHH
Confidence 78888877776432 222222333445555566677777777775420 0122343333222 222333333332
Q ss_pred HHHHHHHcCCCcc-hhHHHHHHHHHHh--------cCChhhHHHHHHhcCC--CC--------hHHHHHHHHHHHhcCCh
Q 010961 194 IHSHILVNGLDFD-SVLGSSLVNLYGK--------CGDFNSANQVLNMMKE--PD--------DFCLSALISGYANCGKM 254 (496)
Q Consensus 194 ~~~~~~~~~~~~~-~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~ 254 (496)
.+..... ..+. ......+...+.. .|++++|..+++++.+ |+ ..++..+...+...|++
T Consensus 182 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 2222111 1111 1122333333222 2467777777777764 33 22455566667777788
Q ss_pred hHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 255 NDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 255 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
++|...|+++.+ |+...|..+...+...|++++|+..+++..+.. +.+..++..+...+...|++++|...++.+.+
T Consensus 260 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 260 LDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888887777654 445667777777777788888888887777653 34566677777777777888888888877777
Q ss_pred cCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------C
Q 010961 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-------S 400 (496)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-------~ 400 (496)
.. +.+...+..+..++...|++++|...+++.. +.++..+..+...+...|++++|...|+++.+ | .
T Consensus 339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 54 3345667777777778888888888777766 44556777777777788888888777777653 1 1
Q ss_pred hhhHHHHHHHHHhC----------CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 401 LISWNSMIVGLSQN----------GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 401 ~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
...+..+...+... |++++|...++++.+.. +.+...+..+..++...|++++|...++...+..
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 12234445666666 77888888888777652 4456677777777778888888888888777654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-22 Score=189.81 Aligned_cols=359 Identities=10% Similarity=0.005 Sum_probs=203.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHH
Q 010961 102 NDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178 (496)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 178 (496)
+...+..+...+.+.|++++|..+|+.+.+ .+..+|..+..++...|++++|++.|+++.+. .+.+...+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l 100 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL----KMDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCcHHHHHHH
Confidence 345666777777777777777777776653 35566777777777777777777777777662 22345666667
Q ss_pred HHHHHccchHHHHHHHHHHHHHcCCCcch---hHHHHHH------------HHHHhcCChhhHHHHHHhcCC---CChHH
Q 010961 179 IGACADLAALEYGKQIHSHILVNGLDFDS---VLGSSLV------------NLYGKCGDFNSANQVLNMMKE---PDDFC 240 (496)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~---~~~~~ 240 (496)
..++...|+++.|...++.+.+.... +. ..+..+. ..+...|++++|...|+++.+ .+...
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 77777777777777777777665432 22 3333332 235555666666666655442 23444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 010961 241 LSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-ASTLASVLSACSS 316 (496)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~ 316 (496)
+..+..++.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++... .|+ ...+..+ ...
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~-~~~-- 254 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHY-KQV-- 254 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH-HHH--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHH-HHH--
Confidence 55555555555555555555555432 23445555555555555555555555555442 222 2222211 000
Q ss_pred ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cCc-----hhhHHHHHHHHHhcCCHHHH
Q 010961 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VYD-----TILLNTMITVYSSCGRIEDA 389 (496)
Q Consensus 317 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-----~~~~~~l~~~~~~~~~~~~a 389 (496)
........+...+...|++++|...|+++. .|+ ...+..+...+.+.|++++|
T Consensus 255 --------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 255 --------------------KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 000001112555566666666666666655 222 22455566666666666666
Q ss_pred HHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC-CHHHHHHHHH------------HHhccC---
Q 010961 390 KHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVIS------------ACANIS--- 450 (496)
Q Consensus 390 ~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~------------~~~~~g--- 450 (496)
...++++.+ | +..+|..+..+|...|++++|...++++.+. .| +...+..+.. .|...|
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 666666542 3 4566777777777777777777777777764 34 3444554442 233334
Q ss_pred --chhhHHHHHHH-HHHcCCC--ch-------HHHHHHHHHHHHhcCChHHHHH
Q 010961 451 --SLELGEQVFAR-VTIIGLD--SD-------QIISTSLVDFYCKCGFIKMDEY 492 (496)
Q Consensus 451 --~~~~a~~~~~~-~~~~~~~--~~-------~~~~~~l~~~~~~~g~~~~A~~ 492 (496)
+.+++.+.+++ ..+..+. |+ ...+..+..+|...|+.+++..
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 55667777775 3332211 11 2477788888888888776654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-22 Score=194.16 Aligned_cols=416 Identities=11% Similarity=0.004 Sum_probs=321.3
Q ss_pred hhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHH
Q 010961 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEG 81 (496)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 81 (496)
+..+..+...+...|++++|...|+.+++.. |+...++..+...|.+.|++++|++.|+++.+ .+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4567778888999999999999999999987 55555899999999999999999999998864 467789999999
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCC------CcccHHHHHHHHHHcCCHHHHHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR------NAIAWNSMIHCYVRNGFAREAVR 155 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~ 155 (496)
+...|++++|+..|+.+.. ++......+..+...+...+|...++.+... ........+..+....+.+.+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999999999974432 2222233344555666678899999888652 22344556666777888877776
Q ss_pred HHHHHHHchhccCCcCHHHHHHHH-HHHHc--------cchHHHHHHHHHHHHHcCCCcc------hhHHHHHHHHHHhc
Q 010961 156 LFKELNSDLVERLQCDAFILATVI-GACAD--------LAALEYGKQIHSHILVNGLDFD------SVLGSSLVNLYGKC 220 (496)
Q Consensus 156 ~~~~~~~~~~~~~~p~~~~~~~ll-~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~ 220 (496)
.+..... ..+....+...+ ..+.. .++++.|..+++.+.+..+... ..++..+...+...
T Consensus 182 ~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 182 SVNTSSN-----YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp TSCCCCS-----SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhccc-----cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 6554433 334333333322 22222 2588999999999987654421 23566777888899
Q ss_pred CChhhHHHHHHhcCC--CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 221 GDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 221 ~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
|++++|...++...+ |+...+..+...+...|++++|.+.|+++.+ .+..+|..+...+...|++++|...+++.
T Consensus 257 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999998874 7778889999999999999999999998764 34678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc---Cch--
Q 010961 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV---YDT-- 370 (496)
Q Consensus 296 ~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-- 370 (496)
.+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+..++...|++++|...|+++.. .+.
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 8864 3456788889999999999999999999999875 45567888999999999999999999998872 111
Q ss_pred ----hhHHHHHHHHHhc----------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 371 ----ILLNTMITVYSSC----------GRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 371 ----~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
..+......+... |++++|...|+++.+ .+..++..+...|...|++++|.+.|++..+.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1234445677777 999999999998864 35678999999999999999999999999986
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.3e-22 Score=187.10 Aligned_cols=330 Identities=13% Similarity=0.031 Sum_probs=246.6
Q ss_pred HHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHH
Q 010961 121 TARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197 (496)
Q Consensus 121 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 197 (496)
.+...+..... | +...+..+...+.+.|++++|+.+|+++.+. .+.+...+..+..++...|+++.|...++.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444444443 2 4567888889999999999999999998873 344677888888888999999999999999
Q ss_pred HHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CCh----HHHHHHHHHHHhcCChhHHHHHHHhcCCCCcch
Q 010961 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDD----FCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (496)
+.+.++. +..++..+..+|...|++++|...|+++.+ |+. ..+..+...+.. ..
T Consensus 86 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~ 145 (450)
T 2y4t_A 86 VIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QR 145 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HH
T ss_pred HHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HH
Confidence 8887644 567788888888888999999888888765 332 444444443221 12
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (496)
+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+..++..+..+|..
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3334556777888888888888887653 4567777788888888888888888888887753 4456778888888888
Q ss_pred cCChhhHHHHHHhcc---cCchhhHHHH------------HHHHHhcCCHHHHHHHHhhCCC--CC-----hhhHHHHHH
Q 010961 352 RGMPSDACKLFSELK---VYDTILLNTM------------ITVYSSCGRIEDAKHIFRTMPN--KS-----LISWNSMIV 409 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~---~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~l~~ 409 (496)
.|++++|...|+++. +.+...+..+ ...+...|++++|...|+++.+ |+ ...|..++.
T Consensus 224 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 888888888888776 2333444444 7889999999999999999864 44 347888999
Q ss_pred HHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 410 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
.+.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|...++.+.+.... +...+..+.
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 9999999999999999998763 457889999999999999999999999999875322 456666666
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-18 Score=160.54 Aligned_cols=321 Identities=12% Similarity=0.042 Sum_probs=177.9
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHH
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 214 (496)
..+..+...+...|++++|++.|+++.+. .+.+...+..+...+...|+++.|...++.+.+..+. +...+..+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 78 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHH
Confidence 34555566666666666666666666552 2233455666666666666666666666666655432 445566666
Q ss_pred HHHHhcCChhhHHHHHHhcCC--C---C-hHHHHHH------------HHHHHhcCChhHHHHHHHhcCC---CCcchHH
Q 010961 215 NLYGKCGDFNSANQVLNMMKE--P---D-DFCLSAL------------ISGYANCGKMNDARRVFDRTTD---TSSVMWN 273 (496)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~--~---~-~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 273 (496)
..+...|++++|...++++.+ | + ...+..+ ...+...|++++|.+.++++.+ .+...+.
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 666666777777666666554 3 1 1122222 3444455555555555554332 2233444
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353 (496)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (496)
.+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...-
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~---- 232 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK---- 232 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH----
Confidence 44445555555555555555544432 333444444444444455555555555444443211 111111000000
Q ss_pred ChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-----hhHHHHHHHHHhCCChhhHHHHHHH
Q 010961 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSL-----ISWNSMIVGLSQNGSPIEALDLFCN 426 (496)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~ 426 (496)
.......+...+.+.|++++|...++++.+ |+. ..+..+...+...|++++|...+++
T Consensus 233 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 233 ---------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 000011224556667777777777766553 322 2345577888888899999998888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483 (496)
Q Consensus 427 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 483 (496)
..+.. +.+..++..+...+...|++++|...++.+.+... -+...+..+..+...
T Consensus 298 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 298 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHH
T ss_pred HHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence 88752 44677888888888888999999999888877542 235566666665544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.9e-17 Score=162.54 Aligned_cols=379 Identities=12% Similarity=0.140 Sum_probs=282.7
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhcc-CCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHH
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 82 (496)
||......++++...|.+.+|..+++.+.-.+- ..+.....+.|+....+. +..+..+..++...-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 566678889999999999999999999994431 011222666677777666 5566665555554322 45577888
Q ss_pred HhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 83 MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
...|.+++|..+|++.... ....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~~~-~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDVN-TSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcCCH-HHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 8999999999999997532 222233332 6688999999988774 4568889999999999999999998553
Q ss_pred chhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHH
Q 010961 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242 (496)
Q Consensus 163 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 242 (496)
-|...|..++.++.+.|+++++.+.+....+... ++...+.++.+|++.+++++...++ ..++...|.
T Consensus 1132 -------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~ 1199 (1630)
T 1xi4_A 1132 -------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQ 1199 (1630)
T ss_pred -------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHH
Confidence 4566788899999999999999999988777653 3333445888899988888655443 456777788
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhh
Q 010961 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322 (496)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 322 (496)
.+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+-.+|...|++..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 8889999999999999999885 48889999999999999999998866 345788888888888888888
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccC---chhhHHHHHHHHHh--cCCHHHHHHHHhhCC
Q 010961 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY---DTILLNTMITVYSS--CGRIEDAKHIFRTMP 397 (496)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~ 397 (496)
|...... +..++..+..++..|.+.|.+++|+.+++..... +...|+-+...|.+ -++..++.+.|..-.
T Consensus 1269 A~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1269 AQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 8876543 3345566778888999999999999999877633 34456666666655 345666666666544
Q ss_pred C--------CChhhHHHHHHHHHhCCChhhHHH
Q 010961 398 N--------KSLISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 398 ~--------~~~~~~~~l~~~~~~~g~~~~a~~ 422 (496)
. .+...|.-++..|.+.|+++.|..
T Consensus 1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3 245678888999999999998873
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=162.92 Aligned_cols=236 Identities=9% Similarity=0.081 Sum_probs=74.9
Q ss_pred hcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCC-
Q 010961 53 RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR- 131 (496)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 131 (496)
+.|+.++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.+++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 556777777777777444 37777777777777777777777543 5555777777777777777777776665554
Q ss_pred -CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHH
Q 010961 132 -RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210 (496)
Q Consensus 132 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 210 (496)
+++.+.+.++.+|.+.|+++++.++++ .|+..++..+...|...|.++.|...|..+ ..|
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp ------------------CHHHHTTTTT----------CC----------------CTTTHHHHHHHT---------TCH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 345667777777777777777666652 245556666666777777777777776644 356
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHH
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 290 (496)
..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|+.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHH
Confidence 666666666677777666666663 55666666666666666666655555433 233333345566666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHh
Q 010961 291 LFHKMRRNGVLEDASTLASVLSACS 315 (496)
Q Consensus 291 ~~~~m~~~g~~~~~~~~~~l~~~~~ 315 (496)
+++...... +.....|+.+.-.++
T Consensus 229 lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 229 MLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 666655433 333444444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-18 Score=158.62 Aligned_cols=88 Identities=11% Similarity=0.079 Sum_probs=38.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 277 SGYISNNEDTEALLLFHKMRRNGVLEDA----STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352 (496)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (496)
..+...|++++|...+++..+.. +.+. ..+..+...+...|++++|...++.+.+.. +.+..++..+..++...
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc
Confidence 34445555555555555544432 1111 112223334444455555555554444432 22334444444444444
Q ss_pred CChhhHHHHHHhcc
Q 010961 353 GMPSDACKLFSELK 366 (496)
Q Consensus 353 ~~~~~a~~~~~~~~ 366 (496)
|++++|...|++..
T Consensus 320 g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQ 333 (359)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=161.74 Aligned_cols=238 Identities=13% Similarity=0.134 Sum_probs=57.4
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010961 84 KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163 (496)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 163 (496)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark- 89 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK- 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-
Confidence 345555666666555333 25555666666666666666555432 3444555555555555555555554444443
Q ss_pred hhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHH
Q 010961 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243 (496)
Q Consensus 164 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 243 (496)
..+++.+...++.+|.+.|+++++.++++ .|+..++..+...|...|.+++|..+|..+ ..|..
T Consensus 90 ----~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~ 153 (449)
T 1b89_A 90 ----KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGR 153 (449)
T ss_dssp -----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHH
T ss_pred ----hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHH
Confidence 22334445555555555555555554442 134445555555555555555555555544 24555
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhH
Q 010961 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323 (496)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 323 (496)
++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. +.| .....++..|.+.|.++++
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a--d~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH--hhHHHHHHHHHHCCCHHHH
Confidence 5555555555555555555542 34455555555555555555533222211 112 1222344444444444444
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 324 KQVHGHACKVGVIDDVIVASALLDTYS 350 (496)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (496)
..+++...... +-....|+.+..+|+
T Consensus 227 i~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 227 ITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 44444444332 223333444443333
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-17 Score=154.42 Aligned_cols=344 Identities=11% Similarity=0.010 Sum_probs=178.2
Q ss_pred HHHHHHHHHHh----cCChHHHHHHhhhCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHH
Q 010961 43 IANRLLQMYMR----CGNPTDALLLFDEMPR-RNCFSWNAMIEGFMK----LGHKEKSLQLFNVMPQ-KNDFSWNMLISG 112 (496)
Q Consensus 43 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~ 112 (496)
.+..+...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|.+.|++..+ .++..+..|...
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~ 120 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVM 120 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55556666666 6666667666665543 345556666666666 6666666666665544 344455555555
Q ss_pred HHh----cCChhHHHHHHhhcCCC-CcccHHHHHHHHHH----cCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHH
Q 010961 113 FAK----AGELKTARTLFNDMPRR-NAIAWNSMIHCYVR----NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183 (496)
Q Consensus 113 ~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 183 (496)
|.. .+++++|.++|++..++ +..++..|...|.. .+++++|++.|++..+. .+...+..+...+.
T Consensus 121 y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 121 YHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------GNVWSCNQLGYMYS 194 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHh
Confidence 555 45566666666555432 34455555555554 45555555555555441 13344444444444
Q ss_pred c----cchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh----cCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChh
Q 010961 184 D----LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK----CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255 (496)
Q Consensus 184 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (496)
. .++.++|.+.+++..+.| +...+..+...|.. .+++++|..+|++..+.
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------------- 252 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ------------------- 252 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-------------------
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------------------
Confidence 4 455555555555555443 23334444444443 44555555555443321
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----cchhhHHHH
Q 010961 256 DARRVFDRTTDTSSVMWNSMISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL-----GFLEHGKQV 326 (496)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-----~~~~~a~~~ 326 (496)
.++..+..+...|.. .+++++|+..|++..+.| +...+..+...+... ++.++|...
T Consensus 253 -----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 253 -----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp -----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred -----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 122333334444444 455555555555554432 222333333333333 455555555
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHhcC---ChhhHHHHHHhcc-cCchhhHHHHHHHHHh----cCCHHHHHHHHhhCCC
Q 010961 327 HGHACKVGVIDDVIVASALLDTYSKRG---MPSDACKLFSELK-VYDTILLNTMITVYSS----CGRIEDAKHIFRTMPN 398 (496)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 398 (496)
+....+.| +...+..+...|...| ++++|++.|++.. ..++..+..+...|.. .+++++|...|++..+
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 55555543 2223344444444433 4455555555444 2234444445555544 4555555555555443
Q ss_pred -CChhhHHHHHHHHHh----CCChhhHHHHHHHHHhCC
Q 010961 399 -KSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLD 431 (496)
Q Consensus 399 -~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 431 (496)
.+...+..|...|.. .++.++|...|++..+.+
T Consensus 396 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 396 QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 345566677777776 677888888888877765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-17 Score=155.16 Aligned_cols=348 Identities=10% Similarity=-0.007 Sum_probs=233.7
Q ss_pred cCChhHHHHHHhhcCC-CCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHc----cc
Q 010961 116 AGELKTARTLFNDMPR-RNAIAWNSMIHCYVR----NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD----LA 186 (496)
Q Consensus 116 ~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~ 186 (496)
.+++++|..+|++..+ .+..++..|...|.. .+++++|++.|++.... + +...+..+...+.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK---G---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCC
Confidence 4444444444444332 233444444455554 45555555555554441 1 23333344444444 44
Q ss_pred hHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh----cCChhhHHHHHHhcCC-CChHHHHHHHHHHHh----cCChhHH
Q 010961 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK----CGDFNSANQVLNMMKE-PDDFCLSALISGYAN----CGKMNDA 257 (496)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a 257 (496)
++++|...++...+.| +...+..|...|.. .+++++|...|++..+ .+...+..+...|.. .++.++|
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 5555555555555544 33344445555554 4566666666655443 344555555555555 5666667
Q ss_pred HHHHHhcCC-CCcchHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----ccchhhHHHHHH
Q 010961 258 RRVFDRTTD-TSSVMWNSMISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS----LGFLEHGKQVHG 328 (496)
Q Consensus 258 ~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 328 (496)
.++|++..+ .++.++..+...|.. .+++++|..+|++..+.| +...+..+...+.. .++.++|...++
T Consensus 207 ~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 207 AQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 766666544 345567777777776 789999999999998765 34455556666665 789999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHHHhc-----CChhhHHHHHHhcc-cCchhhHHHHHHHHHhcC---CHHHHHHHHhhCCC-
Q 010961 329 HACKVGVIDDVIVASALLDTYSKR-----GMPSDACKLFSELK-VYDTILLNTMITVYSSCG---RIEDAKHIFRTMPN- 398 (496)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~- 398 (496)
...+.| ++..+..+...|... +++++|...|++.. ..++..+..+...|...| +.++|...|++..+
T Consensus 284 ~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 998765 445667788888877 89999999999887 445667778888887766 78999999998775
Q ss_pred CChhhHHHHHHHHHh----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCchhhHHHHHHHHHHcCCC-c
Q 010961 399 KSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSLELGEQVFARVTIIGLD-S 469 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~ 469 (496)
.+...+..+...|.. .+++++|.+.|++..+.| ++..+..|...|.. .+++++|...++...+.+.. |
T Consensus 361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 567888899999998 899999999999999876 56678888888887 89999999999999887754 2
Q ss_pred -hHHHHHHHHHHH
Q 010961 470 -DQIISTSLVDFY 481 (496)
Q Consensus 470 -~~~~~~~l~~~~ 481 (496)
++.....|...+
T Consensus 438 ~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 438 GTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHHHHTTSC
T ss_pred CCHHHHHHHHhcC
Confidence 444444444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-18 Score=154.34 Aligned_cols=284 Identities=12% Similarity=0.031 Sum_probs=159.1
Q ss_pred CCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CChHHHHHH
Q 010961 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSAL 244 (496)
Q Consensus 168 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 244 (496)
.+.+...+..+...+...|+++.|.++++.+.+..+. +...+..++..+...|++++|..+++++.+ .+...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3444445555556666666666666666666655432 334444555555666666666666665542 233444455
Q ss_pred HHHHHhcC-ChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccch
Q 010961 245 ISGYANCG-KMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320 (496)
Q Consensus 245 ~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 320 (496)
...+...| ++++|.+.|+++.+ .+...|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 55555555 55555555554433 123344445555555555555555555544432 11223333344444444445
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 010961 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-- 398 (496)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 398 (496)
++|...++.+.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 176 ~~A~~~~~~al~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 176 KLAERFFSQALSIA--------------------------------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHHTTC--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--------------------------------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 55554444444432 22333444444445555555555444444321
Q ss_pred ----------CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCC
Q 010961 399 ----------KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468 (496)
Q Consensus 399 ----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 468 (496)
....++..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.+.. +
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p 301 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-R 301 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-S
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-C
Confidence 234577888888888888888888888887753 4466778888888888888888888888776643 2
Q ss_pred chHHHHHHHHHHH-HhcCCh
Q 010961 469 SDQIISTSLVDFY-CKCGFI 487 (496)
Q Consensus 469 ~~~~~~~~l~~~~-~~~g~~ 487 (496)
.+...+..+..++ ...|+.
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC-
T ss_pred CchHHHHHHHHHHHHHhCch
Confidence 2566777777777 445544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-17 Score=149.14 Aligned_cols=273 Identities=14% Similarity=-0.019 Sum_probs=159.9
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHH
Q 010961 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212 (496)
Q Consensus 133 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 212 (496)
+...+..+...+...|++++|+++|+++.+. .+.+...+..++..+...|+++.|...++++.+.... +...+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 3444555555555555555555555555442 1122233344444555555555555555555554322 3445555
Q ss_pred HHHHHHhcC-ChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCH
Q 010961 213 LVNLYGKCG-DFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNED 285 (496)
Q Consensus 213 l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 285 (496)
+...+...| ++++|...+++..+ .+...|..+...+...|++++|...|+++.+ .+...+..+...+...|++
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 555555666 56666666655443 2344556666666666666666666665443 2345666677778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcC--------CCchHHHHHHHHHHHHhcCChhh
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG--------VIDDVIVASALLDTYSKRGMPSD 357 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~ 357 (496)
++|...+++..+.. +.+...+..+...+...|++++|...+..+.+.. .+....++..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888877653 4456677777777778888888888887776632 12334567777777777777777
Q ss_pred HHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHH
Q 010961 358 ACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGL 411 (496)
Q Consensus 358 a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 411 (496)
|...+++.. +.+...+..+...+...|++++|...|++..+ | +...+..+..++
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 777777655 33444555555555555555555555555543 2 333444444444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-16 Score=153.85 Aligned_cols=408 Identities=11% Similarity=-0.009 Sum_probs=209.6
Q ss_pred hHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC
Q 010961 28 HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KN 102 (496)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 102 (496)
++..++.. |....+|..++. +.+.|++++|..+|+++.+ | +...|...+..+.+.|++++|..+|+++.. |+
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 34444444 555557877777 4677888888888888765 3 455777888888888888888888888876 66
Q ss_pred hhhHHHHHHHH-HhcCChhHHHH----HHhhcC-----C-CCcccHHHHHHHHHH---------cCCHHHHHHHHHHHHH
Q 010961 103 DFSWNMLISGF-AKAGELKTART----LFNDMP-----R-RNAIAWNSMIHCYVR---------NGFAREAVRLFKELNS 162 (496)
Q Consensus 103 ~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~ 162 (496)
...|...+... ...|+++.|.+ +|+... . ++...|...+....+ .|++++|..+|++..+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66666666432 34566666554 555432 1 234566666665554 6778888888888776
Q ss_pred chhccCCcCHHHHHHHHHHH-------------HccchHHHHHHHHHHHHH------cC---CCcc--------hhHHHH
Q 010961 163 DLVERLQCDAFILATVIGAC-------------ADLAALEYGKQIHSHILV------NG---LDFD--------SVLGSS 212 (496)
Q Consensus 163 ~~~~~~~p~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~~~~------~~---~~~~--------~~~~~~ 212 (496)
. +..+....|....... ...+++..|..++..+.. .. ++|+ ...|..
T Consensus 159 ~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 159 N---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp S---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred c---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 2 1111122332222111 122344444444443211 10 1121 112222
Q ss_pred HHHHHHhc----CCh----hhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHh
Q 010961 213 LVNLYGKC----GDF----NSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281 (496)
Q Consensus 213 l~~~~~~~----~~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 281 (496)
.+...... ++. .++..+|++... .+...|..++..+.+.. .....
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~------------------------~~~~~ 291 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSS------------------------KLLAE 291 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------------------HHHHT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------------------------hhhhh
Confidence 22211111 111 133334444332 12334444444333200 00001
Q ss_pred CCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 282 NNEDT-------EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 282 ~~~~~-------~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
.|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+.+.+........+|..++..+.+.|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 34443 44444444443111223444444444444455555555555555443211011244444444445555
Q ss_pred hhhHHHHHHhcccC---chhhHHHHHHH-HHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHH
Q 010961 355 PSDACKLFSELKVY---DTILLNTMITV-YSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNM 427 (496)
Q Consensus 355 ~~~a~~~~~~~~~~---~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 427 (496)
+++|.++|++.... +...+...... +...|+.++|..+|++..+ | +...|..++..+.+.|+.++|..+|++.
T Consensus 372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 55555555544411 11111111111 2235666666666665543 3 4567777777777888888888888887
Q ss_pred HhCC-CCCC--HHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 428 NKLD-LRMD--KFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 428 ~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
...+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7753 1232 336777777777778888888888777653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-18 Score=158.54 Aligned_cols=274 Identities=12% Similarity=0.086 Sum_probs=190.4
Q ss_pred cCChhhHHH-HHHhcCC--C-----ChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHH
Q 010961 220 CGDFNSANQ-VLNMMKE--P-----DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEA 288 (496)
Q Consensus 220 ~~~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 288 (496)
.|++++|.. .+++..+ | +...+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 356666666 6665442 1 234466666677777777777777766543 2345666777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHH--------------HHHHHHhcCC
Q 010961 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA--------------LLDTYSKRGM 354 (496)
Q Consensus 289 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~ 354 (496)
+..++++.+.. +.+..++..+...+...|++++|...+..+.+............ .+..+...|+
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence 77777776653 44566677777777777777777777777776542221111111 1223337788
Q ss_pred hhhHHHHHHhcc---cC--chhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHH
Q 010961 355 PSDACKLFSELK---VY--DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCN 426 (496)
Q Consensus 355 ~~~a~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 426 (496)
+++|...|+++. +. +..++..+...+...|++++|...++++.+ .+..+|..+...+...|++++|...+++
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888776 22 456777888888888888888888887653 3567889999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCc----------hHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS----------DQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 427 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+.+.. +.+...+..+..++.+.|++++|...++.+.+..... ...++..+..+|.+.|+.++|..+.+
T Consensus 277 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 277 ALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 88863 4567889999999999999999999999887643221 16789999999999999999998765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-16 Score=150.25 Aligned_cols=402 Identities=11% Similarity=0.062 Sum_probs=275.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHhhcCC--CCcccHHHHHHHH-
Q 010961 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGELKTARTLFNDMPR--RNAIAWNSMIHCY- 144 (496)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~- 144 (496)
+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|.++|+++.. |+...|...+...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 6678888888 4788999999999999876 4 456788889999999999999999999876 6666666666533
Q ss_pred HHcCCHHHHHH----HHHHHHHchhccCCc-CHHHHHHHHHHHHc---------cchHHHHHHHHHHHHHcCCCcchhHH
Q 010961 145 VRNGFAREAVR----LFKELNSDLVERLQC-DAFILATVIGACAD---------LAALEYGKQIHSHILVNGLDFDSVLG 210 (496)
Q Consensus 145 ~~~~~~~~a~~----~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 210 (496)
...|+.++|.+ +|+..... -|..| +...|...+..... .|+++.|..+|+..++.........|
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~--~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDK--IGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHH--TTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 34577666655 66666553 23343 45566666665544 68889999999988873111112233
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHh------cC-------CCC--------c
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR------TT-------DTS--------S 269 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~-------~~~--------~ 269 (496)
..........|. ..+..++.. +.+++..|..++.. .. .|+ .
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 322221111111 111111111 12233334333332 11 111 1
Q ss_pred chHHHHHHHHHhC----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------ccchh-------hHHHHH
Q 010961 270 VMWNSMISGYISN----NED----TEALLLFHKMRRNGVLEDASTLASVLSACSS-------LGFLE-------HGKQVH 327 (496)
Q Consensus 270 ~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~ 327 (496)
..|...+...... ++. ..+..+|++.... .+.+...|..+...+.+ .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 3444444332221 232 4778889888875 34567777777777764 68887 899999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cCc-h-hhHHHHHHHHHhcCCHHHHHHHHhhCCCC---C
Q 010961 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VYD-T-ILLNTMITVYSSCGRIEDAKHIFRTMPNK---S 400 (496)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 400 (496)
+...+.-.+.+...+..++..+.+.|++++|..+|+++. .|+ + ..|..++..+.+.|++++|.++|++..+. +
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 389 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence 999873335568889999999999999999999999988 343 3 47888888889999999999999998762 2
Q ss_pred hhhHHHHHHH-HHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCC-Cch--HHHHHH
Q 010961 401 LISWNSMIVG-LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL-DSD--QIISTS 476 (496)
Q Consensus 401 ~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~~~~~~ 476 (496)
...|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+. .|+ ..+|..
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 2233322222 336899999999999988762 44678999999999999999999999999988643 333 458888
Q ss_pred HHHHHHhcCChHHHHHhhh
Q 010961 477 LVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~ 495 (496)
.+....+.|+.+.+.++.+
T Consensus 469 ~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 469 FLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 8888889999999988764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-15 Score=149.00 Aligned_cols=375 Identities=12% Similarity=0.071 Sum_probs=219.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CC-----hhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcC
Q 010961 75 WNAMIEGFMKLGHKEKSLQLFNVMPQ-KN-----DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148 (496)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 148 (496)
-...+++|+..|.+.+|+++++++.- |+ ...-+.++.+..+. +..+..+..++...-+ ...+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 34455556666666666666666542 21 12233344433333 3344444444443222 333555666666
Q ss_pred CHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHH
Q 010961 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228 (496)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 228 (496)
.+++|..+|++... .....+.++ ...+++++|.++.++.. +..+|..+..++...|++++|..
T Consensus 1064 lyEEAf~IYkKa~~--------~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV--------NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred CHHHHHHHHHHcCC--------HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 66666666666422 111112221 14556666666665431 35566666666666677777666
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 010961 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306 (496)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 306 (496)
.|.+. .|...|..++.++.+.|++++|.+.+....+ +++...+.++.+|++.+++++..... . .++...
T Consensus 1127 sYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1127 SYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred HHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 66554 4455566666666667777777666655443 22223334666666666666422221 1 334445
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCH
Q 010961 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386 (496)
Q Consensus 307 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (496)
+..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|...|++
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHH
Confidence 555666666677777777776653 25666667777777777777776654 4456666666667677777
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHH
Q 010961 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN--ISSLELGEQVFARVTI 464 (496)
Q Consensus 387 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~ 464 (496)
..|...... ...+...+..++..|.+.|.+++|+.+++...... +-....|.-+...+++ -++..++.++|.. +
T Consensus 1267 ~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~--r 1342 (1630)
T 1xi4_A 1267 RLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--R 1342 (1630)
T ss_pred HHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH--h
Confidence 777665554 23345566688889999999999999998877553 3344456555555554 3444444444442 2
Q ss_pred cCCCc------hHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 465 IGLDS------DQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 465 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
.+++| +...|..++..|.+.|+++.|...+
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 23333 5678999999999999999998543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=154.20 Aligned_cols=94 Identities=12% Similarity=-0.119 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
.+..+...+.+.|++++|+..|+++.+. .+.+...+..+..++...|+++.|...++.+.+..+. +..++..+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~ 140 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAV 140 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 3444444555555555555555554441 1223334444444444555555555555544444322 3344444444
Q ss_pred HHHhcCChhhHHHHHHhcC
Q 010961 216 LYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~ 234 (496)
.+...|++++|...++++.
T Consensus 141 ~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555544433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=157.57 Aligned_cols=255 Identities=9% Similarity=0.021 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010961 239 FCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315 (496)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 315 (496)
..+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3466666666667777777777766543 335567777777777777777777777776642 344666777777777
Q ss_pred cccchhhHHHHHHHHHHcCCCc---------hHHHHHHHHHHHHhcCChhhHHHHHHhcc---cC--chhhHHHHHHHHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVID---------DVIVASALLDTYSKRGMPSDACKLFSELK---VY--DTILLNTMITVYS 381 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~--~~~~~~~l~~~~~ 381 (496)
..|++++|...++++.+..... ...++..+...+...|++++|...|+++. +. ++.++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 7777777777777776643110 11223345667777888888888887776 22 5667778888888
Q ss_pred hcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHH
Q 010961 382 SCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
..|++++|...|+++.+ .+..+|..+...|...|++++|...++++.+.. +.+..++..+..+|...|++++|...
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888887654 356789999999999999999999999998863 44578899999999999999999999
Q ss_pred HHHHHHcCCC-----------chHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 459 FARVTIIGLD-----------SDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 459 ~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
++.+.+.... .+..++..|..++...|+.+.|.++.+
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9988764311 136789999999999999999988764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-17 Score=149.37 Aligned_cols=227 Identities=9% Similarity=-0.077 Sum_probs=120.6
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHH
Q 010961 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212 (496)
Q Consensus 133 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 212 (496)
+...+..+...+.+.|++++|++.|+++.+. .+.+..++..+..++...|+++.|...++++.+..+. +..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 3445666666666777777777777666652 2234556666666666666666666666666665432 4556666
Q ss_pred HHHHHHhcCChhhHHHHHHhcCCCCh-------------HHHHHHHHHHHhcCChhHHHHHHHhcCC--C---CcchHHH
Q 010961 213 LVNLYGKCGDFNSANQVLNMMKEPDD-------------FCLSALISGYANCGKMNDARRVFDRTTD--T---SSVMWNS 274 (496)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~ 274 (496)
+..+|...|++++|...++++.+.++ ..+..+...+...|++++|.+.|+++.+ | +..++..
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 66666666777777666666553111 1112234444444555555555544332 1 2344555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 5555555555555555555555432 3334455555555555555555555555555542 2234455555555555555
Q ss_pred hhhHHHHHHhcc
Q 010961 355 PSDACKLFSELK 366 (496)
Q Consensus 355 ~~~a~~~~~~~~ 366 (496)
+++|...|++..
T Consensus 297 ~~~A~~~~~~al 308 (365)
T 4eqf_A 297 YREAVSNFLTAL 308 (365)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-17 Score=147.06 Aligned_cols=260 Identities=10% Similarity=0.013 Sum_probs=170.8
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHH
Q 010961 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGY 279 (496)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 279 (496)
+...+..+...+...|++++|..+|+++.+ .+...+..+...+...|++++|...|+++.+ .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 344556677777788888888888877653 3455666677777777777777777776543 2345666666777
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHhcccchhhHHHHHHHHHHcCCCchHHHHHH
Q 010961 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASV--------------LS-ACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344 (496)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (496)
...|++++|...++++.+.. +.+...+..+ .. .+...|++++|...+..+.+.. +.+...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 77777777777777776642 1122222222 11 2445555555555555555543 223444445
Q ss_pred HHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHH
Q 010961 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 424 (496)
+...+...|++++|...+++... ....+..++..+...+...|++++|...+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVE----------------------------LRPDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH----------------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555555443321 01134567888888888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCc-----------hHHHHHHHHHHHHhcCChHHHHHh
Q 010961 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS-----------DQIISTSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 425 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~ 493 (496)
+++.+.. +.+...+..+..++...|++++|...++.+.+..... +...+..+..++.+.|+.++|.++
T Consensus 230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9887753 4467788889999999999999999999887754332 578888999999999999999988
Q ss_pred hhC
Q 010961 494 LMQ 496 (496)
Q Consensus 494 ~~e 496 (496)
+++
T Consensus 309 ~~~ 311 (327)
T 3cv0_A 309 YAQ 311 (327)
T ss_dssp TTC
T ss_pred HHH
Confidence 753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-16 Score=137.41 Aligned_cols=266 Identities=10% Similarity=0.003 Sum_probs=188.4
Q ss_pred HHHhcCChhhHHHHHHhcCCCCh----HHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHH
Q 010961 216 LYGKCGDFNSANQVLNMMKEPDD----FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291 (496)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 291 (496)
-....|++..|+..++.....++ .....+.++|...|+++.|...++....|+..++..+...+...++.++|++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 34456777777777776654322 23345667777777777777777665445556777777788888888888888
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cC
Q 010961 292 FHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VY 368 (496)
Q Consensus 292 ~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~ 368 (496)
++++...+..| +...+..+...+...|++++|...++. +.+...+..++.++.+.|++++|.+.|+++. .|
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 161 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE 161 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence 88887766545 444555556777888888888888876 4566777888888888888888888888877 33
Q ss_pred chhhH---HHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 010961 369 DTILL---NTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442 (496)
Q Consensus 369 ~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 442 (496)
+.... ...+..+...|++++|..+|+++.+ .+...++.+..++.+.|++++|...+++..+.. +-++.++..+
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l 240 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINL 240 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 32211 1223334455788888888888764 466788889999999999999999999988763 4477788888
Q ss_pred HHHHhccCchhh-HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHh
Q 010961 443 ISACANISSLEL-GEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 443 ~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (496)
+..+...|+.++ +.++++++.+.. |+... +.+...+.+.++++..-
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHH
Confidence 888888898865 578888887754 44332 34456667777776543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-16 Score=140.23 Aligned_cols=225 Identities=12% Similarity=-0.032 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHH
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 214 (496)
..+..+...+...|++++|..+|+++.+. .+.+...+..+..++...|+++.|...++++.+.... +..++..+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 96 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALA 96 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHH
Confidence 34445555555555555555555555542 2223444455555555555555555555555554322 344455555
Q ss_pred HHHHhcCChhhHHHHHHhcCC--CC-hHHHHHH--------------HH-HHHhcCChhHHHHHHHhcCC---CCcchHH
Q 010961 215 NLYGKCGDFNSANQVLNMMKE--PD-DFCLSAL--------------IS-GYANCGKMNDARRVFDRTTD---TSSVMWN 273 (496)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 273 (496)
..+...|++++|...++++.+ |+ ...+..+ .. .+...|++++|.+.++++.+ .+...+.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 176 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA 176 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence 555555555555555555432 11 1111111 11 13444445555555544332 2234555
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353 (496)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (496)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 55555555566666665555555432 2334455555555555555555555555555543 223444555555555555
Q ss_pred ChhhHHHHHHhcc
Q 010961 354 MPSDACKLFSELK 366 (496)
Q Consensus 354 ~~~~a~~~~~~~~ 366 (496)
++++|.+.+++..
T Consensus 255 ~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 255 QYDLAAKQLVRAI 267 (327)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 5555555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-18 Score=165.61 Aligned_cols=123 Identities=14% Similarity=0.146 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhC-------CCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 371 ILLNTMITVYSSCGRIEDAKHIFRTM-------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
.+|+++|++|++.|++++|.++|++| ..||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35666666666666666666666443 25899999999999999999999999999999999999999999999
Q ss_pred HHHhccCch-hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHh
Q 010961 444 SACANISSL-ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 444 ~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (496)
.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++...++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999875 78889999999999999999999888777776655554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.7e-16 Score=135.84 Aligned_cols=252 Identities=10% Similarity=-0.022 Sum_probs=158.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHchhccCCcCH--HHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHH
Q 010961 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDA--FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218 (496)
Q Consensus 141 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (496)
++-....|++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~-----~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP-----SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc-----CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHc
Confidence 3455667888888888877644 44543 3445566777888888877765543 23446667777777777
Q ss_pred hcCChhhHHHHHHhcC----CCC-hHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHH
Q 010961 219 KCGDFNSANQVLNMMK----EPD-DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293 (496)
Q Consensus 219 ~~~~~~~a~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 293 (496)
..|+.++|.+.++++. .|+ ...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7788888888887753 243 44555566777777777777777777 3455667777777777777777777777
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCch
Q 010961 294 KMRRNGVLEDASTL---ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370 (496)
Q Consensus 294 ~m~~~g~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 370 (496)
++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.++..++.+..++...|++++|...|++....+
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 776642 432211 11223333446667777777666665 24455666666666666666666666666543111
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhh-HHHHHHHHHhCCCCCCH
Q 010961 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE-ALDLFCNMNKLDLRMDK 436 (496)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~~~p~~ 436 (496)
..+..++..++..+...|+..+ +.++++++.+. .|+.
T Consensus 231 ---------------------------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~ 268 (291)
T 3mkr_A 231 ---------------------------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSH 268 (291)
T ss_dssp ---------------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTC
T ss_pred ---------------------------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCC
Confidence 1245567777777777777765 46777777764 4543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-15 Score=143.47 Aligned_cols=368 Identities=10% Similarity=-0.036 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC-----------C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----------
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR-----------R-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------- 100 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------- 100 (496)
.|+.|...+...|++++|++.|++..+ | ...+|+.+..+|...|++++|...+++..+
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 788888889999999999888876532 1 245788888888888888888888776542
Q ss_pred -CChhhHHHHHHHHHhc--CChhHHHHHHhhcCC--C-CcccHHHHHHH---HHHcCCHHHHHHHHHHHHHchhccCCc-
Q 010961 101 -KNDFSWNMLISGFAKA--GELKTARTLFNDMPR--R-NAIAWNSMIHC---YVRNGFAREAVRLFKELNSDLVERLQC- 170 (496)
Q Consensus 101 -~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~~~~~~p- 170 (496)
....++..+..++... +++++|+..|++..+ | ++..+..+..+ +...++.++|++.+++..+ +.|
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~-----l~p~ 207 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR-----LNPD 207 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-----HCSS
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-----cCCc
Confidence 1234555555444443 467888888877653 3 33444444444 3345667777777777766 333
Q ss_pred CHHHHHHHHHHHH----ccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC-hHHHHH
Q 010961 171 DAFILATVIGACA----DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD-DFCLSA 243 (496)
Q Consensus 171 ~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~ 243 (496)
+...+..+...+. ..++++.|.+.+++.....+. +..++..+...|...|++++|...+++..+ |+ ..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 3344444433333 345667777887777766543 556677777788888888888888877663 33 344554
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhH
Q 010961 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323 (496)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 323 (496)
+..+|...+....+. . ...........+.++.|...++...+.. +.+...+..+...+...|++++|
T Consensus 287 lg~~y~~~~~~~~~~------~------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNL------R------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhH------H------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHH
Confidence 444443211100000 0 0000000001122345555555554432 22333445555556666666666
Q ss_pred HHHHHHHHHcCCCchHH--HHHHHHH-HHHhcCChhhHHHHHHhccc--CchhhHHHHHHHHHhcCCHHHHHHHHhhCC-
Q 010961 324 KQVHGHACKVGVIDDVI--VASALLD-TYSKRGMPSDACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMP- 397 (496)
Q Consensus 324 ~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 397 (496)
...|+++.+....+... .+..+.. .+...|+.++|+..|.+... |+....... ...+.++++...
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHH
Confidence 66666665544333221 1222222 12345666666666666552 222111111 112222332222
Q ss_pred --CCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCC-CCCCHHH
Q 010961 398 --NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFS 438 (496)
Q Consensus 398 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~ 438 (496)
..+..+|..+...|...|++++|++.|++..+.| ..|+..+
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 2356778888888888888888888888887754 2344433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-14 Score=137.74 Aligned_cols=318 Identities=11% Similarity=-0.002 Sum_probs=141.6
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhc---cCCc-CHHHHHHHHHHHH--ccchHHHHHHHHHHHHHcCCCcchhH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVE---RLQC-DAFILATVIGACA--DLAALEYGKQIHSHILVNGLDFDSVL 209 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~ 209 (496)
+|+.+..+|...|++++|...+++..+.... ...+ ...++.....++. ..+++++|...|++..+..+. ++..
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~ 174 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEF 174 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHH
Confidence 4555555555555555555555544331000 0011 1223333322222 233555666666655554332 2333
Q ss_pred HHHHHHH---HHhcCChhhHHHHHHhcCC--C-ChHHHHHHHHHHHh----cCChhHHHHHHHhcCC---CCcchHHHHH
Q 010961 210 GSSLVNL---YGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYAN----CGKMNDARRVFDRTTD---TSSVMWNSMI 276 (496)
Q Consensus 210 ~~~l~~~---~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~ 276 (496)
+..+..+ +...++.++|+..+++..+ | +...+..+...+.. .+++++|.+.+++... .+..++..+.
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg 254 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 3333322 2234555555555554432 2 23333333333322 3445556666655432 2344566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------------------ccchhhHHHHHHHHHHcCCCc
Q 010961 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS-------------------LGFLEHGKQVHGHACKVGVID 337 (496)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~ 337 (496)
..|...|++++|+..+++..+.. +-+...+..+...+.. .+..+.|...+....+.. +.
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~ 332 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DN 332 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cc
Confidence 66667777777777776666542 2233344444333321 123455566666655543 23
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHhcc--cCchh----hHHHHHH-HHHhcCCHHHHHHHHhhCCC--CChhhHHHHH
Q 010961 338 DVIVASALLDTYSKRGMPSDACKLFSELK--VYDTI----LLNTMIT-VYSSCGRIEDAKHIFRTMPN--KSLISWNSMI 408 (496)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~----~~~~l~~-~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~ 408 (496)
+...+..+...|...|++++|+..|++.. .++.. .+..+.. .....|++++|+..|++..+ |+......
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~-- 410 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK-- 410 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH--
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH--
Confidence 34455666667777777777777776655 12211 1122221 22355666666666665543 22211111
Q ss_pred HHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 409 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
....+.+++++..+.. +.+..+|..+..+|...|++++|.+.+++..+.+
T Consensus 411 -------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 411 -------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp -------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred -------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1122333444443332 4455667777777777777777777777666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=162.39 Aligned_cols=147 Identities=12% Similarity=0.114 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHhc-------CCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010961 238 DFCLSALISGYANCGKMNDARRVFDRT-------TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310 (496)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 310 (496)
..+|+++|++|++.|++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 346777777777777777777777543 3578999999999999999999999999999999999999999999
Q ss_pred HHHHhcccch-hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc-----CchhhHHHHHHHHHhcC
Q 010961 311 LSACSSLGFL-EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-----YDTILLNTMITVYSSCG 384 (496)
Q Consensus 311 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 384 (496)
|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++.+.++...+.+ +...+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 78999999999999999999999998777665444444433333331 11334445556665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.7e-15 Score=137.81 Aligned_cols=334 Identities=14% Similarity=0.071 Sum_probs=127.0
Q ss_pred HHHhcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhcCCh---hHHHHHHhhcCCCCcccHHHHHHHHHHcC-----CHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKAGEL---KTARTLFNDMPRRNAIAWNSMIHCYVRNG-----FAR 151 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~ 151 (496)
.+.+.|++++|+++|++..+ .+...+..|...|...|+. ++|.++|++..+.++.++..|...+...+ +++
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence 33444444444444444332 2223333333334444444 55555555554444444555544333333 445
Q ss_pred HHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHH---HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChh----
Q 010961 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE---YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN---- 224 (496)
Q Consensus 152 ~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 224 (496)
+|++.|++.... +. |+ .+..+...+...+..+ .+.+.+......| +......|...|...+.++
T Consensus 92 ~A~~~~~~Aa~~---g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 92 EAESLLKKAFAN---GE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHT---TC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred HHHHHHHHHHHC---CC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 555555555441 11 11 2333333333333222 2223333333333 2334444555555555333
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHhcC---ChhHHHHHHHhcCCCC---cchHHHHHHHHHhC----CCHHHHHHHHHH
Q 010961 225 SANQVLNMMKEPDDFCLSALISGYANCG---KMNDARRVFDRTTDTS---SVMWNSMISGYISN----NEDTEALLLFHK 294 (496)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~----~~~~~a~~~~~~ 294 (496)
.+..+++.....++..+..+...|...| +.++|.+.|++..+.+ ...+..+...|... +++++|+..|++
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 2333344444444344455555555555 4555555554443311 11223344444322 455555555555
Q ss_pred HHHCCCCCCHHHHHHHHHH-H--hcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC-----ChhhHHHHHHhcc
Q 010961 295 MRRNGVLEDASTLASVLSA-C--SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-----MPSDACKLFSELK 366 (496)
Q Consensus 295 m~~~g~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~ 366 (496)
.. .| +...+..+... + ...++.++|...|.+..+.| ++..+..|..+|. .| ++++|...|++..
T Consensus 243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 44 21 22222223222 1 23455555555555555444 2333334444443 22 4555555555444
Q ss_pred cCchhhHHHHHHHHHh----cCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChhhHHHHHHHHHhCC
Q 010961 367 VYDTILLNTMITVYSS----CGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLD 431 (496)
Q Consensus 367 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 431 (496)
+.++..+..+...|.. ..++++|...|++..++ +......|...|.. ..++.+|..+++...+.|
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 2233333334433333 22444555554444332 23333344444432 234444555555444444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=137.27 Aligned_cols=342 Identities=10% Similarity=0.012 Sum_probs=179.5
Q ss_pred HHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCCh---HHHHHHhhhCCCCChhhHHHHHHHHHhcC
Q 010961 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP---TDALLLFDEMPRRNCFSWNAMIEGFMKLG 86 (496)
Q Consensus 10 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (496)
.+...+.+.|++++|..+|+...+.|. .. ++..|...|...|++ ++|+..|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~-A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SE-AQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CT-GGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HH-HHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 355666777888888888888877752 22 344566677777777 78888888777666667777776555554
Q ss_pred -----CHHHHHHHHhhCCC-CChhhHHHHHHHHHhcCChhH---HHHHHhhcCC-CCcccHHHHHHHHHHcCCHHHHHHH
Q 010961 87 -----HKEKSLQLFNVMPQ-KNDFSWNMLISGFAKAGELKT---ARTLFNDMPR-RNAIAWNSMIHCYVRNGFAREAVRL 156 (496)
Q Consensus 87 -----~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~ 156 (496)
++++|+..|++..+ .+...+..|...|...++.++ +.+.+....+ .+..++..|...|...+.++++.+.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 67778887777655 334466666666665554333 3333333332 3556666777777776654444443
Q ss_pred HHHHHHchhccCCcCHHHHHHHHHHHHccc---hHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc----CChhhHHHH
Q 010961 157 FKELNSDLVERLQCDAFILATVIGACADLA---ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC----GDFNSANQV 229 (496)
Q Consensus 157 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~ 229 (496)
...+.+. -...+...+..+...+...| +.++|.+.|+...+.|.. +...+..|...|... +++++|..+
T Consensus 164 a~~~~~~---a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 164 VERICKA---ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHH---HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHH---HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 3333221 11122225555666666666 667777777776666643 333334455555433 455556655
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHH-H--HhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 010961 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG-Y--ISNNEDTEALLLFHKMRRNGVLEDAST 306 (496)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~g~~~~~~~ 306 (496)
|++.. |+ ++..+..+... + ...+++++|+..|++..+.| +...
T Consensus 240 ~~~aa-~g------------------------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A 285 (452)
T 3e4b_A 240 LEKIA-PG------------------------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA 285 (452)
T ss_dssp HHHHG-GG------------------------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHc-CC------------------------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 55544 22 23444444444 2 34566777777777766655 3344
Q ss_pred HHHHHHHHhccc-----chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh----cCChhhHHHHHHhcc-cCchhhHHHH
Q 010961 307 LASVLSACSSLG-----FLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----RGMPSDACKLFSELK-VYDTILLNTM 376 (496)
Q Consensus 307 ~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~l 376 (496)
+..+...|. .| ++++|...|.... . .++.....|...|.. ..++++|...|++.. ..++.....|
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~L 360 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAI 360 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHH
Confidence 444444444 33 6777777776665 2 244455555555555 237777777777665 3345555556
Q ss_pred HHHHHh----cCCHHHHHHHHhhCCC
Q 010961 377 ITVYSS----CGRIEDAKHIFRTMPN 398 (496)
Q Consensus 377 ~~~~~~----~~~~~~a~~~~~~~~~ 398 (496)
...|.. ..+.++|...|+...+
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 666553 3467777777766554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=125.63 Aligned_cols=218 Identities=11% Similarity=0.007 Sum_probs=165.7
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 010961 238 DFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV--LED----ASTLAS 309 (496)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~~~ 309 (496)
...+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..+++..+... .|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34677788888888888888888876543 5567888888888888888888888888776421 112 467777
Q ss_pred HHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCH
Q 010961 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRI 386 (496)
Q Consensus 310 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 386 (496)
+...+...|++++|...+..+.+.. |+. ..+...|++++|...++... +.+...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 8888888888888888888888764 332 34556677888888888776 33455677788888888888
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 010961 387 EDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463 (496)
Q Consensus 387 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (496)
++|...++++.+ .+..+|..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|...++...
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888887754 356678888888888888888888888887753 4457778888888888888888888888776
Q ss_pred Hc
Q 010961 464 II 465 (496)
Q Consensus 464 ~~ 465 (496)
+.
T Consensus 235 ~~ 236 (258)
T 3uq3_A 235 TK 236 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=122.13 Aligned_cols=203 Identities=10% Similarity=-0.041 Sum_probs=119.7
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347 (496)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (496)
++..+..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34556666666777777777777777666542 3445556666666666666666666666666654 334445555555
Q ss_pred HHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHH
Q 010961 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLF 424 (496)
Q Consensus 348 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~ 424 (496)
++...+... .. .....|++++|+..|++..+ | +...|..+...+...|++++|+..+
T Consensus 82 ~~~~~~~~~-----------~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 141 (217)
T 2pl2_A 82 AYVALYRQA-----------ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASL 141 (217)
T ss_dssp HHHHHHHTC-----------SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhhhhh-----------hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 555550000 00 00001555555555555442 3 4556777777788888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 425 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
++..+.. .+...+..+..++...|++++|...++...+... .+...+..+..++.+.|++++|.+.++
T Consensus 142 ~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 142 KQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC------------
T ss_pred HHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8877765 6677777788888888888888888887777543 255677777888888888888877765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=127.37 Aligned_cols=187 Identities=11% Similarity=-0.021 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHH
Q 010961 73 FSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVR 146 (496)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 146 (496)
.+|..+...+...|++++|.+.|+++.+ .+..++..+...+...|++++|.+.|+++.+ .+..++..+..++.+
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 3444445555555555555555554433 2345555555666666666666666665543 245677777777888
Q ss_pred cCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhH
Q 010961 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226 (496)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (496)
.|++++|.+.|+++.+ ..|+.......+..+...|+++.|...+......... +...+ .++..+...++.++|
T Consensus 124 ~g~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQ-----DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGW-NIVEFYLGNISEQTL 196 (275)
T ss_dssp TTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHH-HHHHHHTTSSCHHHH
T ss_pred hccHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHhcCHHHH
Confidence 8888888888888776 3454444444555556667788888888776665432 33333 355666666777777
Q ss_pred HHHHHhcCCCCh-------HHHHHHHHHHHhcCChhHHHHHHHhcCC
Q 010961 227 NQVLNMMKEPDD-------FCLSALISGYANCGKMNDARRVFDRTTD 266 (496)
Q Consensus 227 ~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (496)
...++...+.+. ..+..+...+...|++++|...|++..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777665322 3333444444444444444444444333
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-14 Score=121.70 Aligned_cols=214 Identities=12% Similarity=0.025 Sum_probs=147.7
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhcCC--CChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CC--------cchHHH
Q 010961 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD--TS--------SVMWNS 274 (496)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--------~~~~~~ 274 (496)
...+..+...+...|++++|...|++..+ .+...+..+..++...|++++|.+.+++..+ |+ ..+|..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44566677777777777777777766542 5566777777777777777777777776554 11 356677
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
+...+...|++++|+..|++..+. .|+. ..+...|++++|...+..+.+.. +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 777777777777777777777763 4543 23445567777777777776653 3445566777777777777
Q ss_pred hhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 010961 355 PSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMN 428 (496)
Q Consensus 355 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 428 (496)
+++|...+++.. +.++..+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|...+++..
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777777766 44566677777777777777777777777653 345667777777777777777777777766
Q ss_pred hC
Q 010961 429 KL 430 (496)
Q Consensus 429 ~~ 430 (496)
+.
T Consensus 235 ~~ 236 (258)
T 3uq3_A 235 TK 236 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-15 Score=133.30 Aligned_cols=244 Identities=9% Similarity=-0.038 Sum_probs=190.2
Q ss_pred hhhhccCccchhhhhhHHHHHhcc--CCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCC
Q 010961 13 QSCNTHHSIHVGKQLHLHFLKKGI--LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGH 87 (496)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 87 (496)
......+++++|...++.+++... .|....++..+...+...|++++|+..|+++.+ .+..+|..+...+...|+
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 345567899999999999998742 233445888999999999999999999998864 467889999999999999
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 88 KEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 88 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
+++|++.|+++.+ .+..++..+...+...|++++|...|+++.+ |+.......+..+...|++++|...+++...
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999999876 4678899999999999999999999999874 5555555566666788999999999988877
Q ss_pred chhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCc---chhHHHHHHHHHHhcCChhhHHHHHHhcCCCChH
Q 010961 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF---DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239 (496)
Q Consensus 163 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 239 (496)
. .+++...+ .++..+...++.+.|...+....+..... +..++..+...+...|++++|...|++..+.++.
T Consensus 173 ~----~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 173 K----SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp H----SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred c----CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 3 33443444 46677778888899999998876544321 2567888999999999999999999998875444
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 010961 240 CLSALISGYANCGKMNDARRVF 261 (496)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~ 261 (496)
.+.....++...|++++|++.+
T Consensus 248 ~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHhhHHHH
Confidence 4444455666667776666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-13 Score=116.94 Aligned_cols=222 Identities=9% Similarity=-0.029 Sum_probs=145.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCc--hHHHHHHHHHHH
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID--DVIVASALLDTY 349 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 349 (496)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+..+.+.+..+ ....+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455556666666666666665542 2223345555556666666666666666665532111 122356666667
Q ss_pred HhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHH
Q 010961 350 SKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDL 423 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~ 423 (496)
...|++++|.+.|++.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...+++++|.+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776665 34556677777777777777777777777765 2 455666777344445689999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCc---hhhHHHHHHHHHHcC-CCch------HHHHHHHHHHHHhcCChHHHHHh
Q 010961 424 FCNMNKLDLRMDKFSLASVISACANISS---LELGEQVFARVTIIG-LDSD------QIISTSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 424 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A~~~ 493 (496)
++++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ...+..+...|.+.|++++|.+.
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99988763 3456777778888888887 888888888776532 1233 25777888899999999999888
Q ss_pred hh
Q 010961 494 LM 495 (496)
Q Consensus 494 ~~ 495 (496)
++
T Consensus 244 ~~ 245 (272)
T 3u4t_A 244 WK 245 (272)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-13 Score=115.04 Aligned_cols=195 Identities=14% Similarity=-0.014 Sum_probs=138.8
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHhcCCC---CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010961 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDT---SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312 (496)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 312 (496)
++...+..+...+.+.|++++|...|++..+. +...|..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 35667888999999999999999999987763 45688889999999999999999999998863 446677888888
Q ss_pred HHhcc-----------cchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHH
Q 010961 313 ACSSL-----------GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381 (496)
Q Consensus 313 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 381 (496)
.+... |++++|...++...+.. +.+...+..+..++...|++++|+..|++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------- 146 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALA-------------- 146 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh--------------
Confidence 88888 88888888888887764 33456667777777777777777777775431
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
+. .+...+..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++
T Consensus 147 --------------~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 147 --------------LE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp --------------HC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred --------------cc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 11 455667777777777788888888888777652 34566777777778888888888777765
Q ss_pred H
Q 010961 462 V 462 (496)
Q Consensus 462 ~ 462 (496)
.
T Consensus 211 ~ 211 (217)
T 2pl2_A 211 E 211 (217)
T ss_dssp -
T ss_pred H
Confidence 4
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-13 Score=116.27 Aligned_cols=239 Identities=8% Similarity=-0.062 Sum_probs=173.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 010961 241 LSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED--ASTLASVLSACS 315 (496)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~ 315 (496)
+......+...|++++|...|+++.+ .+...+..+...+...|++++|+..+++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34445556666666666666665543 2345778888888888999999998888887432222 334777888888
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHI 392 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 392 (496)
..|++++|...++.+.+.. +.+..++..+..+|...|++++|...|++.. +.+...+..+...+...+++++|...
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999888864 3456778889999999999999999999887 34556677777344455699999999
Q ss_pred HhhCCC--C-ChhhHHHHHHHHHhCCC---hhhHHHHHHHHHhCC-CCCC------HHHHHHHHHHHhccCchhhHHHHH
Q 010961 393 FRTMPN--K-SLISWNSMIVGLSQNGS---PIEALDLFCNMNKLD-LRMD------KFSLASVISACANISSLELGEQVF 459 (496)
Q Consensus 393 ~~~~~~--~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~ 459 (496)
|+++.+ | +...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...|...|++++|...+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988775 3 45677778888888888 888999998877642 1233 257788888999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHH
Q 010961 460 ARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 460 ~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
+++.+... -++.....+....
T Consensus 245 ~~al~~~p-~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 245 KNILALDP-TNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHCT-TCHHHHHHHC---
T ss_pred HHHHhcCc-cHHHHHHHhhhhh
Confidence 99988653 2455555544443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-12 Score=112.11 Aligned_cols=218 Identities=12% Similarity=0.028 Sum_probs=133.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCC-CcchHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010961 241 LSALISGYANCGKMNDARRVFDRTTDT-SSVMWNSMISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315 (496)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 315 (496)
+..+...+...|++++|.+.|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+...+.
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 85 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYY 85 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHh
Confidence 333344444444444444444443332 23344455555555 566666666666555543 4444555555555
Q ss_pred c----ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh----cCChhhHHHHHHhccc-CchhhHHHHHHHHHh----
Q 010961 316 S----LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----RGMPSDACKLFSELKV-YDTILLNTMITVYSS---- 382 (496)
Q Consensus 316 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~---- 382 (496)
. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++... .+...+..+...|..
T Consensus 86 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 86 SGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred CCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCC
Confidence 5 566666666666655543 34455555555655 5666666666665542 234445555555555
Q ss_pred cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCchh
Q 010961 383 CGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSLE 453 (496)
Q Consensus 383 ~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~ 453 (496)
.+++++|...|++..+ .+...+..+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .++++
T Consensus 163 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 163 PKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCST
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 6666666666666544 355677778888888 889999999999888864 25667777788887 88999
Q ss_pred hHHHHHHHHHHcCC
Q 010961 454 LGEQVFARVTIIGL 467 (496)
Q Consensus 454 ~a~~~~~~~~~~~~ 467 (496)
+|...+++..+.|.
T Consensus 240 ~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 240 QAIENFKKGCKLGA 253 (273)
T ss_dssp THHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999998888763
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-13 Score=124.82 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhC----CCCC-CHH
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN-----KS----LISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLRM-DKF 437 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~ 437 (496)
++..+...+...|++++|...+++..+ ++ ..++..+...|...|++++|...+++..+. +-.+ ...
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 334444444444444444444444331 11 235556666666777777777766665442 1111 134
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHc----CCCc-hHHHHHHHHHHHHhcCCh
Q 010961 438 SLASVISACANISSLELGEQVFARVTII----GLDS-DQIISTSLVDFYCKCGFI 487 (496)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 487 (496)
++..+...+...|++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 5666666677777777777777655432 2111 234555666666666654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-12 Score=112.01 Aligned_cols=216 Identities=10% Similarity=-0.037 Sum_probs=186.8
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----ccchhhHHHHHHHHHHcCCCchHHHHH
Q 010961 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS----LGFLEHGKQVHGHACKVGVIDDVIVAS 343 (496)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (496)
++.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4567788889999999999999999999883 345677778888888 999999999999999986 667788
Q ss_pred HHHHHHHh----cCChhhHHHHHHhcc-cCchhhHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh
Q 010961 344 ALLDTYSK----RGMPSDACKLFSELK-VYDTILLNTMITVYSS----CGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ 413 (496)
Q Consensus 344 ~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~ 413 (496)
.+...|.. .+++++|+..|++.. ..++..+..+...|.. .+++++|...|++..+ .+...+..+...|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 89999999 999999999999887 4467788889999999 9999999999998775 456778888888888
Q ss_pred ----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh--
Q 010961 414 ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK-- 483 (496)
Q Consensus 414 ----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 483 (496)
.+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+. ...+..|..+|.+
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGE 232 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCC
Confidence 899999999999999875 45778888888888 9999999999999988753 5677889999998
Q ss_pred --cCChHHHHHhhh
Q 010961 484 --CGFIKMDEYYLM 495 (496)
Q Consensus 484 --~g~~~~A~~~~~ 495 (496)
.|++++|.+.++
T Consensus 233 ~~~~~~~~A~~~~~ 246 (273)
T 1ouv_A 233 GVTRNEKQAIENFK 246 (273)
T ss_dssp SSSCCSTTHHHHHH
T ss_pred CcccCHHHHHHHHH
Confidence 999999999875
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-13 Score=115.95 Aligned_cols=195 Identities=15% Similarity=0.058 Sum_probs=126.3
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3455556666666677777777776666542 3345566666666666777777777777666653 3345566666677
Q ss_pred HHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHH
Q 010961 349 YSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 422 (496)
+...|++++|.+.++++. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|..
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776665 34555666677777777777777777776653 356678888888888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 423 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
.++++.+.. +.+..++..+..++...|++++|...++.+.+..
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 998887763 4467788888888999999999999999888754
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-12 Score=112.02 Aligned_cols=192 Identities=10% Similarity=-0.022 Sum_probs=111.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (496)
|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+.++.+.. +.+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3444444444444444444444444331 2233444444444445555555555555544432 2233444445555555
Q ss_pred cCChhhHHHHHHhccc-----CchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHH
Q 010961 352 RGMPSDACKLFSELKV-----YDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDL 423 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 423 (496)
.|++++|.+.++++.. .+...+..+...+...|++++|...++++.+ .+...+..+...|...|++++|...
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555554432 1223444555555555555555555555442 3456777788888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 424 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
++++.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 198 YDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88887753 4566777778888888888888888888887754
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-12 Score=112.17 Aligned_cols=201 Identities=13% Similarity=-0.040 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHH
Q 010961 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286 (496)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (496)
...+..+...+...|++++|...++++.+.+ ..+...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------------------~~~~~~~~~la~~~~~~~~~~ 88 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID----------------------------PSSADAHAALAVVFQTEMEPK 88 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----------------------------CChHHHHHHHHHHHHHcCCHH
Confidence 3445555556666666666666665544200 112334455555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 287 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 365 (496)
+|.+.++++.+.. +.+...+..+...+...|++++|..+++.+.+.+..| +...+..+..++...|++++|...+++.
T Consensus 89 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 89 LADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555432 2244455555555555666666666665555422222 3445555666666666666666666655
Q ss_pred c---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHH
Q 010961 366 K---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438 (496)
Q Consensus 366 ~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 438 (496)
. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|.+.++++.+. .|+...
T Consensus 168 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 244 (252)
T 2ho1_A 168 LRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLE 244 (252)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHH
T ss_pred HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHH
Confidence 4 33455566666666677777777776666543 35567778888888899999999999998875 454333
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-12 Score=115.96 Aligned_cols=239 Identities=9% Similarity=-0.004 Sum_probs=174.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010961 238 DFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNE-DTEALLLFHKMRRNGVLEDASTLASVLSA 313 (496)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 313 (496)
...|..+...+...|++++|++.++++.+ .+..+|+.+...+...|+ +++|+..|++..+.. +-+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 34566677777777778888887777654 235677778888888886 888888888887753 3456677777778
Q ss_pred HhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHh-cCCHHHH
Q 010961 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSS-CGRIEDA 389 (496)
Q Consensus 314 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~-~~~~~~a 389 (496)
+...|++++|...++++++.. +.+...|..+..++...|++++|+..|+++. +.+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 888888888888888888765 4466777888888888888888888888877 4456678888888887 5554666
Q ss_pred -----HHHHhhCCC--C-ChhhHHHHHHHHHhCC--ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--------c
Q 010961 390 -----KHIFRTMPN--K-SLISWNSMIVGLSQNG--SPIEALDLFCNMNKLDLRMDKFSLASVISACANIS--------S 451 (496)
Q Consensus 390 -----~~~~~~~~~--~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--------~ 451 (496)
+..+++..+ | +...|+.+...+...| +.++|++.+.++ +. -+.+...+..+...|.+.| +
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 466666653 3 5668888888888877 688899988887 33 2456778888888888764 2
Q ss_pred -hhhHHHHHHHH-HHcCCCc-hHHHHHHHHHHHH
Q 010961 452 -LELGEQVFARV-TIIGLDS-DQIISTSLVDFYC 482 (496)
Q Consensus 452 -~~~a~~~~~~~-~~~~~~~-~~~~~~~l~~~~~ 482 (496)
.++|..+++++ .+. .| ....|..+...+.
T Consensus 333 ~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 333 ILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 58899999888 553 34 3456666666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-10 Score=111.92 Aligned_cols=419 Identities=10% Similarity=0.010 Sum_probs=260.7
Q ss_pred cchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHhcCC---HHHHHHH
Q 010961 21 IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIEGFMKLGH---KEKSLQL 94 (496)
Q Consensus 21 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~---~~~a~~~ 94 (496)
...-...++..++.+ |.....|..++..+.+.+.++.+..+|+++.. | ....|..-+..-.+.|+ ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 444455566666665 55666999999999999999999999999876 3 45677778888888888 9999999
Q ss_pred HhhCCC-----CChhhHHHHHHHHHhcCCh--------hHHHHHHhhcC------CC-CcccHHHHHHHHH---------
Q 010961 95 FNVMPQ-----KNDFSWNMLISGFAKAGEL--------KTARTLFNDMP------RR-NAIAWNSMIHCYV--------- 145 (496)
Q Consensus 95 ~~~~~~-----~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~------~~-~~~~~~~li~~~~--------- 145 (496)
|++... |++..|...+....+.++. +.+.++|+... .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999875 6677777777665555543 33446666532 22 2346766665543
Q ss_pred HcCCHHHHHHHHHHHHHchhccCCcCHHHHHH---HHHHH----------HccchHHHHHHHHHHHHHc--CCC------
Q 010961 146 RNGFAREAVRLFKELNSDLVERLQCDAFILAT---VIGAC----------ADLAALEYGKQIHSHILVN--GLD------ 204 (496)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~---ll~~~----------~~~~~~~~a~~~~~~~~~~--~~~------ 204 (496)
..++.+.+..+|++.... +...-..+|.. ..... ....+++.|...+.++... ++.
T Consensus 206 eq~~~~~~R~iy~raL~i---P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQ---PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHTTS---CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHhHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 234567788888888762 11111223321 11111 0112334445555443321 111
Q ss_pred ---------c--c------hhHHHHHHHHHHhcC-------ChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHH
Q 010961 205 ---------F--D------SVLGSSLVNLYGKCG-------DFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDA 257 (496)
Q Consensus 205 ---------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 257 (496)
| + ...|...+..--..+ ..+.+..+|++... .....|-..+..+...|+.++|
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHH
Confidence 0 0 123333443322222 12234455666553 3456777777777788888888
Q ss_pred H-HHHHhcCC--C-CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHH
Q 010961 258 R-RVFDRTTD--T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNG---------VLED------------ASTLASVLS 312 (496)
Q Consensus 258 ~-~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---------~~~~------------~~~~~~l~~ 312 (496)
. .+|+++.. | +...|-..+...-+.|++++|..+|+.+.... -.|+ ...|...+.
T Consensus 363 ~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 363 ITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 6 88887665 3 33446666777777888888888888877531 0131 235666666
Q ss_pred HHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc-CChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHH
Q 010961 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR-GMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIED 388 (496)
Q Consensus 313 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 388 (496)
...+.|..+.|..+|..+.+.-......+|...+..-.+. ++.+.|.++|+... +.++..+...+......|+.+.
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence 6677788888888888887751112233343333333344 44788888888777 4456666777777777888888
Q ss_pred HHHHHhhCCC--C----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010961 389 AKHIFRTMPN--K----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446 (496)
Q Consensus 389 a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 446 (496)
|..+|++... | ....|...+..-.+.|+.+.+.++.+++.+. .|+......++.-|
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 8888888765 2 2246777777777888888888888888876 45544555555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-12 Score=118.55 Aligned_cols=222 Identities=10% Similarity=-0.024 Sum_probs=186.7
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-hhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF-LEHGKQVHGHACKVGVIDDVIVASALLD 347 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (496)
...|..+...+...|++++|+..+++..+.. +-+...|..+...+...|+ +++|...++++++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4578888899999999999999999999853 4457788888889999996 999999999999976 456788999999
Q ss_pred HHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh-CCChhhH
Q 010961 348 TYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQ-NGSPIEA 420 (496)
Q Consensus 348 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~-~g~~~~a 420 (496)
++...|++++|+..|+++. +.+...|..+..++...|++++|+..++++.+ .+...|+.+..++.. .|..++|
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 9999999999999999988 55778899999999999999999999999875 366789999999999 6666888
Q ss_pred -----HHHHHHHHhCCCCCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC--------
Q 010961 421 -----LDLFCNMNKLDLRMDKFSLASVISACANIS--SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 485 (496)
Q Consensus 421 -----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 485 (496)
+..+++..... +-+...|..+...+...| ++++|...++++ +. -+.+...+..|+++|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 58888888752 336778888888898888 689999999887 33 3346788899999999875
Q ss_pred -ChHHHHHhhh
Q 010961 486 -FIKMDEYYLM 495 (496)
Q Consensus 486 -~~~~A~~~~~ 495 (496)
.+++|.++++
T Consensus 332 ~~~~~A~~~~~ 342 (382)
T 2h6f_A 332 DILNKALELCE 342 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 2588888775
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-13 Score=125.12 Aligned_cols=232 Identities=14% Similarity=0.020 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC--C-C----hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR--R-N----CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK 115 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 115 (496)
.+......+...|++++|+..|+++.+ | + ..+|..+...+...|++++|...+++... ....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------~~~~ 79 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-----------LART 79 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------HHHh
Confidence 444555566666666666666665542 2 1 13445555555555555555555544321 0000
Q ss_pred cCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhcc-CC-cCHHHHHHHHHHHHccch------
Q 010961 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER-LQ-CDAFILATVIGACADLAA------ 187 (496)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-p~~~~~~~ll~~~~~~~~------ 187 (496)
.++.. ....++..+...+...|++++|+..+++........ .. ....++..+...+...|+
T Consensus 80 ~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 148 (406)
T 3sf4_A 80 IGDQL-----------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPG 148 (406)
T ss_dssp TTCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred ccccH-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccc
Confidence 00000 012345555566666666666666666554421000 00 012345555556666666
Q ss_pred --------------HHHHHHHHHHHHHc----CCCc-chhHHHHHHHHHHhcCChhhHHHHHHhcCC-----CC----hH
Q 010961 188 --------------LEYGKQIHSHILVN----GLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----PD----DF 239 (496)
Q Consensus 188 --------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~ 239 (496)
++.|...+....+. +..+ ...++..+...+...|++++|...+++..+ ++ ..
T Consensus 149 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (406)
T 3sf4_A 149 PQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 228 (406)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 66666666554432 1111 123455566666666666666666655442 11 11
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCC-----CC----cchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010961 240 CLSALISGYANCGKMNDARRVFDRTTD-----TS----SVMWNSMISGYISNNEDTEALLLFHKMR 296 (496)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 296 (496)
++..+...+...|++++|...+++..+ ++ ..++..+...+...|++++|...+++..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 344444444444444444444443321 00 2234444445555555555555554443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-13 Score=116.36 Aligned_cols=191 Identities=10% Similarity=0.030 Sum_probs=87.9
Q ss_pred hhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHH
Q 010961 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEG 81 (496)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 81 (496)
+..+..+...+...|+++.|..+++.+++.. |....++..+...+...|++++|+..|+++.+ .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3444455555556666666666666666543 33333555666666666666666666665542 234455555555
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVR 155 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 155 (496)
+...|++++|.+.++++.+ .+...+..+...+...|++++|...++++.+ .+...+..+...+.+.|++++|.+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5566666666665555433 2344444555555555555555555554432 233444445555555555555555
Q ss_pred HHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 010961 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 156 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
.|++..+. .+.+..++..+..++...|+++.|...++++.+.
T Consensus 181 ~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQ----DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHH----CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55554441 1222334444444444455555555555544443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.9e-12 Score=116.11 Aligned_cols=222 Identities=13% Similarity=0.028 Sum_probs=126.1
Q ss_pred HHHcCCHHHHHHHHHHHHHchhccCCcC--HHHHHHHHHH--HHccchHHHHH-----------HHHHHHHHcCCCcch-
Q 010961 144 YVRNGFAREAVRLFKELNSDLVERLQCD--AFILATVIGA--CADLAALEYGK-----------QIHSHILVNGLDFDS- 207 (496)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~ll~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~- 207 (496)
+.+.+++++|..+++++.+.. ..+..| ...|..++.. ....+..+.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~-~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQEL-DQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 356788888888888876642 222223 3333444332 22233444444 555555442211111
Q ss_pred ---hHHHHHHHHHHhcCChhhHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChhHHHHHHHhcCC-----CC--
Q 010961 208 ---VLGSSLVNLYGKCGDFNSANQVLNMMKE-----PD----DFCLSALISGYANCGKMNDARRVFDRTTD-----TS-- 268 (496)
Q Consensus 208 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-- 268 (496)
..+......+...|++++|...+++..+ ++ ..++..+...|...|+++.|...+++..+ ++
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 1122255566778888888888877653 22 34566677777777777777777765443 11
Q ss_pred ---cchHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc----CC-
Q 010961 269 ---SVMWNSMISGYISNNEDTEALLLFHKMRRN----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV----GV- 335 (496)
Q Consensus 269 ---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~- 335 (496)
..+++.+...|...|++++|+..+++..+. +-.+ ...++..+...+...|++++|...+.+..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 235666667777777777777777666542 1111 1135555666666777777777777666552 22
Q ss_pred CchHHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 336 IDDVIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
+....++..+..+|...|++++|...+++..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344556666666666677666666666543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-12 Score=108.38 Aligned_cols=195 Identities=9% Similarity=-0.014 Sum_probs=162.7
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
+..|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 5678888899999999999999999988753 4567788888889999999999999999998875 4467788889999
Q ss_pred HHhc-CChhhHHHHHHhccc--Cc---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhh
Q 010961 349 YSKR-GMPSDACKLFSELKV--YD---TILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIE 419 (496)
Q Consensus 349 ~~~~-~~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~ 419 (496)
+... |++++|...++++.. .+ ...+..+...+...|++++|...++++.+ | +...+..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 9999 999999999998774 22 46778888889999999999999988764 3 46778888899999999999
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 420 ALDLFCNMNKLDLR-MDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 420 a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
|...++++.+.. + .+...+..+...+...|+.+.+..+++.+.+..
T Consensus 166 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999988763 4 567777777888888899999999988887643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-12 Score=108.04 Aligned_cols=200 Identities=10% Similarity=-0.069 Sum_probs=155.9
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010961 237 DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313 (496)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 313 (496)
+...+..+...+...|++++|.+.|+++.+ .+...|..+...+...|++++|...+++..+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 355677888888899999999998887654 345678888888889999999999998887753 4467778888888
Q ss_pred Hhcc-cchhhHHHHHHHHHHcCC-CchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHH
Q 010961 314 CSSL-GFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIED 388 (496)
Q Consensus 314 ~~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 388 (496)
+... |++++|...++.+.+.+. +.+...+..+..++...|++++|...++++. +.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 8888 999999999988887322 2346677888888888999999999888876 4456778888888889999999
Q ss_pred HHHHHhhCCC----CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHH
Q 010961 389 AKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439 (496)
Q Consensus 389 a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 439 (496)
|...++++.+ .+...+..+...+...|+.+.|..+++.+.+. .|+....
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~ 218 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHH
Confidence 9888887753 35566777777788889999998888888764 4544433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=127.44 Aligned_cols=260 Identities=14% Similarity=0.012 Sum_probs=174.2
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC-h----HHHHHHHHHHHhcCChhHHHHHHHhcCCC---------Ccc
Q 010961 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD-D----FCLSALISGYANCGKMNDARRVFDRTTDT---------SSV 270 (496)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~ 270 (496)
...+..+...+...|++++|...|+++.+ |+ . ..+..+...+...|++++|...+++..+. ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34555677788889999999999988764 33 2 46778888888899999998888865531 235
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHhcccc-----------------hhhHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRN----G-VLEDASTLASVLSACSSLGF-----------------LEHGKQVHG 328 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 328 (496)
++..+...|...|++++|...+++..+. + .+....++..+...+...|+ +++|...+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 6777888888889999999888887653 1 11224466667777888888 888888877
Q ss_pred HHHHc----CC-CchHHHHHHHHHHHHhcCChhhHHHHHHhccc-----Cc----hhhHHHHHHHHHhcCCHHHHHHHHh
Q 010961 329 HACKV----GV-IDDVIVASALLDTYSKRGMPSDACKLFSELKV-----YD----TILLNTMITVYSSCGRIEDAKHIFR 394 (496)
Q Consensus 329 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 394 (496)
+..+. +. .....++..+...|...|++++|...+++... .+ ...+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 21 12234667777778888888888888877651 11 1256666677777777777777776
Q ss_pred hCCC-----C----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCchhhHHHHHH
Q 010961 395 TMPN-----K----SLISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLELGEQVFA 460 (496)
Q Consensus 395 ~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (496)
+..+ . ...++..+...|...|++++|...+++..+. +..+ ...++..+...+...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6543 1 1345666667777777777777777766542 1011 13356666666777777777777777
Q ss_pred HHHHcC
Q 010961 461 RVTIIG 466 (496)
Q Consensus 461 ~~~~~~ 466 (496)
+..+..
T Consensus 368 ~al~~~ 373 (411)
T 4a1s_A 368 QHLQLA 373 (411)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 776653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=122.43 Aligned_cols=59 Identities=14% Similarity=-0.036 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN-----K----SLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
++..+...+...|++++|...+++..+ + ...++..+...|...|++++|.+.+++..+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 334444444445555555444444332 1 1236667778888888888888888887764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-12 Score=117.12 Aligned_cols=205 Identities=15% Similarity=-0.018 Sum_probs=101.8
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCC--cCHHHHHHHHHHHHccch--------------------HHHHH
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ--CDAFILATVIGACADLAA--------------------LEYGK 192 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~--------------------~~~a~ 192 (496)
.++..+...+...|++++|.+.+++..+....... ....++..+...+...|+ ++.|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 34556666666677777777766665542110000 012355556666666666 66666
Q ss_pred HHHHHHHHc----CCC-cchhHHHHHHHHHHhcCChhhHHHHHHhcCC-----CChHHHHHHHHHHHhcCChhHHHHHHH
Q 010961 193 QIHSHILVN----GLD-FDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----PDDFCLSALISGYANCGKMNDARRVFD 262 (496)
Q Consensus 193 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 262 (496)
..+++..+. +.. ....++..+...+...|++++|...+++..+ ++...
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------------------- 221 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA---------------------- 221 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH----------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH----------------------
Confidence 666554432 111 1123455566666666666666666655442 11000
Q ss_pred hcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc----
Q 010961 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV---- 333 (496)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 333 (496)
...++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...++...+.
T Consensus 222 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 222 -----ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp -----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 0123444444555555555555555444321 1000 1234444455555556666665555554432
Q ss_pred CCC-chHHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 334 GVI-DDVIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 334 ~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
+.. ....++..+...|...|++++|...+++..
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 111 113345556666666677776666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.6e-12 Score=114.80 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhC----CCCC-CHHH
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN-----KS----LISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLRM-DKFS 438 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~ 438 (496)
+..+...+...|++++|...+++..+ ++ ..++..+...|...|++++|...+++..+. +-++ ...+
T Consensus 226 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 305 (338)
T 3ro2_A 226 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 305 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 34444444444444444444444331 11 345666777777788888888877776542 1111 1346
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 439 LASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
+..+...+...|++++|...+++..+.
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 306 CWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777777888888888888888877653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-12 Score=116.02 Aligned_cols=221 Identities=9% Similarity=-0.024 Sum_probs=122.6
Q ss_pred HHHccchHHHHHHHHHHHHHc----CCCc-chhHHHHHHHHHHhcCChhhHHHHHHhcCC-----CC-----hHHHHHHH
Q 010961 181 ACADLAALEYGKQIHSHILVN----GLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----PD-----DFCLSALI 245 (496)
Q Consensus 181 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~l~ 245 (496)
.+...|+++.|...+++..+. +..+ ...++..+...|...|++++|...+++..+ ++ ..++..+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 344445555555555554432 1111 223445555555555555555555554432 11 23455555
Q ss_pred HHHHhcCChhHHHHHHHhcCC-----CC----cchHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 010961 246 SGYANCGKMNDARRVFDRTTD-----TS----SVMWNSMISGYISNNEDTEALLLFHKMRRN----GV-LEDASTLASVL 311 (496)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~l~ 311 (496)
..|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+. +. +....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 666666666666666655442 11 236777888888888888888888887662 23 33456677788
Q ss_pred HHHhcccchhhHHHHHHHHHHc----CCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHH
Q 010961 312 SACSSLGFLEHGKQVHGHACKV----GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387 (496)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (496)
..+...|++++|...+++..+. +.+.....+..+...|...|+.+ .++
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------~~~ 323 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE----------------------------AIQ 323 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH----------------------------HHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH----------------------------HHH
Confidence 8888889999988888876653 11111222344444555555510 033
Q ss_pred HHHHHHhhCCCC--ChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 388 DAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 388 ~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
+|..++++.... ....+..+...|...|++++|...+++..+
T Consensus 324 ~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 324 GFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444221 123455566666666666666666666544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-09 Score=107.04 Aligned_cols=419 Identities=10% Similarity=0.026 Sum_probs=249.3
Q ss_pred HHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCC---hhHHHHHHhh
Q 010961 58 TDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGE---LKTARTLFND 128 (496)
Q Consensus 58 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~ 128 (496)
.+-+..|++... .|..+|..++..+.+.+.++.+..+|+++.. | ....|...+..-.+.|+ ++.+..+|++
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 334444444432 4778999999999999999999999999987 4 45567777888888888 9999999999
Q ss_pred cCC-----CCcccHHHHHHHHHHcCCH--------HHHHHHHHHHHHchhccC-CcC-HHHHHHHHHHHH---------c
Q 010961 129 MPR-----RNAIAWNSMIHCYVRNGFA--------REAVRLFKELNSDLVERL-QCD-AFILATVIGACA---------D 184 (496)
Q Consensus 129 ~~~-----~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~~~~~~~-~p~-~~~~~~ll~~~~---------~ 184 (496)
... |++..|...+....+.++. +...++|+..... -|. .|+ ...|...+.... .
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~--vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK--CAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH--TTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--hCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 874 5666787777766665543 3344777776654 345 554 456666665543 2
Q ss_pred cchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh-------------cCChhhHHHHHHhcC-------C--CC-----
Q 010961 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK-------------CGDFNSANQVLNMMK-------E--PD----- 237 (496)
Q Consensus 185 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~-------~--~~----- 237 (496)
.++.+.+.++|+.++......-..+|......-.. ..+++.|...+.++. + |.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 45678889999998853222222333322221111 112233334443311 0 00
Q ss_pred ---------------hHHHHHHHHHHHhcCC-------hhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHH-HH
Q 010961 238 ---------------DFCLSALISGYANCGK-------MNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEAL-LL 291 (496)
Q Consensus 238 ---------------~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~-~~ 291 (496)
...|...+.---..+. .+.+..+|++... .....|-..+..+...|+.++|. .+
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1234444433322221 1233455655443 23456666666666777777775 77
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCC---------Cc------------hHHHHHHHHHHHH
Q 010961 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV---------ID------------DVIVASALLDTYS 350 (496)
Q Consensus 292 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~ 350 (496)
|++.... ++.+...+...+....+.|+++.|..+|+.+.+... .| ...+|...+....
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 7777653 344555555566666677778888888877765310 12 2235666667667
Q ss_pred hcCChhhHHHHHHhcccC----chhhHHHHHHHHHhc-CCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHH
Q 010961 351 KRGMPSDACKLFSELKVY----DTILLNTMITVYSSC-GRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~ 422 (496)
+.|+.+.|..+|...... ....|...+..-.+. ++.+.|.++|+...+ | +...|...+......|+.+.|..
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 777777888888776522 222333222222233 347777777777665 3 44555666666667777888888
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 423 LFCNMNKLDLRM--DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 423 ~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
+|++.......+ ....|...+.--...|+.+.+..+.+++.+.- |+......+++-|
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 888777653211 23466667766667788888888877777653 3333333344433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-10 Score=107.53 Aligned_cols=298 Identities=14% Similarity=0.009 Sum_probs=137.6
Q ss_pred HHHHHH--HHcCCHHHHHHHHHHHHHchhccCCcC--HHHHHHHHHHH--HccchHHHHH---------HHHHHHHHcCC
Q 010961 139 SMIHCY--VRNGFAREAVRLFKELNSDLVERLQCD--AFILATVIGAC--ADLAALEYGK---------QIHSHILVNGL 203 (496)
Q Consensus 139 ~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~--~~~~~~~~a~---------~~~~~~~~~~~ 203 (496)
.|-..| .+.+++++|.++++++.+.. ..+..| ...|..++..- ...+..+... ..++.+.....
T Consensus 15 ~l~~wy~~i~~~~~~~A~~l~~~i~~~~-~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 93 (378)
T 3q15_A 15 KINEWYKMIRQFSVPDAEILKAEVEQDI-QQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK 93 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHG-GGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC
Confidence 333444 67788888888888876532 122223 33334333321 1112222222 44444432211
Q ss_pred Ccch----hHHHHHHHHHHhcCChhhHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChhHHHHHHHhcCC----
Q 010961 204 DFDS----VLGSSLVNLYGKCGDFNSANQVLNMMKE-----PD----DFCLSALISGYANCGKMNDARRVFDRTTD---- 266 (496)
Q Consensus 204 ~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 266 (496)
+.+. ..+......+...|++++|...+++..+ ++ ..++..+...|...|+++.|...+++..+
T Consensus 94 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 173 (378)
T 3q15_A 94 KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN 173 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 1111 1122334445566777777777766543 22 23444555555555555555555544332
Q ss_pred -CC-----cchHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc--
Q 010961 267 -TS-----SVMWNSMISGYISNNEDTEALLLFHKMRRN----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV-- 333 (496)
Q Consensus 267 -~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 333 (496)
++ ..+++.+...|...|++++|...+++..+. +.++ ...++..+...+...|++++|...+.+..+.
T Consensus 174 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 174 HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 11 224445555555555555555555554331 1111 1123344444445555555555555544431
Q ss_pred --CCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-hhhHHHHHHH
Q 010961 334 --GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVG 410 (496)
Q Consensus 334 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~ 410 (496)
+.+....++..+..++...|++++|...+++.. ++......+. ...+..+...
T Consensus 254 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 254 EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL------------------------DHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCCTTCCSCHHHHHHHHHHH
T ss_pred hhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------------------------HHHHHcCCHHHHHHHHHHHHH
Confidence 112223344444444444555555444444322 1111111111 1234455555
Q ss_pred HHhCCC---hhhHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 411 LSQNGS---PIEALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 411 ~~~~g~---~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
|...|+ ..+|+..+++ .+..| ....+..+...|...|++++|...+++..+
T Consensus 310 y~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556666 5555555554 22222 233555677777777777777777776654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.8e-11 Score=98.37 Aligned_cols=163 Identities=7% Similarity=-0.011 Sum_probs=93.5
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
+..|..+...|...|++++|+..|++..+.. +-+...+..+...+.+.|++++|...+..+....
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-------------- 69 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-------------- 69 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 3345555555555555555555555554432 2234444444444555555555555555444432
Q ss_pred HHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHH
Q 010961 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFC 425 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 425 (496)
+.+...+..+...+...++++.|...+.+..+ .+...+..+...|.+.|++++|++.++
T Consensus 70 ------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 70 ------------------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp ------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------------------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 22233334444444444455555444444332 345567777777777888888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 426 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
+..+.. +.+...|..+..++.+.|++++|...+++..+.
T Consensus 132 ~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 132 KTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 777653 445667777777888888888888888877663
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-11 Score=116.70 Aligned_cols=201 Identities=12% Similarity=-0.048 Sum_probs=102.1
Q ss_pred hhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHH
Q 010961 254 MNDARRVFDRTTD---TSSVMWNSMISGYISNNED-TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329 (496)
Q Consensus 254 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 329 (496)
++++...+++... .+...+..+...+...|++ ++|+..|++..+.. +.+...+..+...+...|++++|...|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443332 2334555555566666666 66666666655532 22345555555556666666666666666
Q ss_pred HHHcCCCchHHHHHHHHHHHHhc---------CChhhHHHHHHhcc---cCchhhHHHHHHHHHhc--------CCHHHH
Q 010961 330 ACKVGVIDDVIVASALLDTYSKR---------GMPSDACKLFSELK---VYDTILLNTMITVYSSC--------GRIEDA 389 (496)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~--------~~~~~a 389 (496)
+.+.. |+...+..+..++... |++++|++.|++.. +.+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 55543 3345555555555555 55555655555544 23344455555555544 555555
Q ss_pred HHHHhhCCC--C----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHH
Q 010961 390 KHIFRTMPN--K----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458 (496)
Q Consensus 390 ~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
...|++..+ | +...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|...
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554432 2 33445555555555555555555555554431 22333444444455555554444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-10 Score=103.32 Aligned_cols=227 Identities=11% Similarity=-0.067 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHhc----CCh----hHHHHHHHhcCC---CCcchHHHHHHHHH-------hCCCH-------HHHHHHHH
Q 010961 239 FCLSALISGYANC----GKM----NDARRVFDRTTD---TSSVMWNSMISGYI-------SNNED-------TEALLLFH 293 (496)
Q Consensus 239 ~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~ 293 (496)
..|...+....+. ++. ++|...|++... .++..|..++..+. ..|++ ++|..+|+
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~ 88 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 88 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHH
Confidence 4566666665543 233 678888988776 34667888877765 35886 89999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHH-HHHHHHHHHHhcCChhhHHHHHHhccc---Cc
Q 010961 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSKRGMPSDACKLFSELKV---YD 369 (496)
Q Consensus 294 ~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~ 369 (496)
+..+.-.+-+...+..+...+.+.|++++|..+|+++.+... .+.. +|..++..+.+.|++++|..+|++... .+
T Consensus 89 rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 89 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence 998741234566788888888999999999999999988532 2233 788899999999999999999998873 23
Q ss_pred hhhHHHHHHHHH-hcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCC-CCC--CHHHHHHH
Q 010961 370 TILLNTMITVYS-SCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRM--DKFSLASV 442 (496)
Q Consensus 370 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~l 442 (496)
...|........ ..|++++|..+|++..+ | +...|..++..+.+.|++++|..+|++..... ++| ....|..+
T Consensus 168 ~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~ 247 (308)
T 2ond_A 168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 247 (308)
T ss_dssp THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 334433333322 36999999999998865 3 56788889999999999999999999999863 465 35678888
Q ss_pred HHHHhccCchhhHHHHHHHHHHcC
Q 010961 443 ISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
+....+.|+.+.|..+++++.+..
T Consensus 248 ~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 248 LAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHc
Confidence 888888999999999999988754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-11 Score=99.36 Aligned_cols=156 Identities=11% Similarity=0.018 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 010961 338 DVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGL 411 (496)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 411 (496)
+..+|..+...|...|++++|++.|++.. +.++..+..+...|.+.|++++|...++.... .+...+..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 34556666667777777777777776665 34555666677777777777777777766643 4566788888999
Q ss_pred HhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHH
Q 010961 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491 (496)
Q Consensus 412 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 491 (496)
...++++.|...+.+..... +.+...+..+..++.+.|++++|...+++..+... .++..+..+..+|.+.|++++|.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998863 45678899999999999999999999999988753 36788999999999999999999
Q ss_pred Hhhh
Q 010961 492 YYLM 495 (496)
Q Consensus 492 ~~~~ 495 (496)
+.++
T Consensus 162 ~~~~ 165 (184)
T 3vtx_A 162 KYFK 165 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-10 Score=101.59 Aligned_cols=222 Identities=9% Similarity=-0.016 Sum_probs=174.1
Q ss_pred chhHHHHHHHHHHhc----CCh----hhHHHHHHhcCC---CChHHHHHHHHHHH-------hcCCh-------hHHHHH
Q 010961 206 DSVLGSSLVNLYGKC----GDF----NSANQVLNMMKE---PDDFCLSALISGYA-------NCGKM-------NDARRV 260 (496)
Q Consensus 206 ~~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~-------~~~~~-------~~a~~~ 260 (496)
+...|...+..-.+. ++. ++|..+|++..+ .++..|..++..+. +.|++ ++|..+
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 345666677665443 233 678888888775 45667888777765 45886 899999
Q ss_pred HHhcCC---C-CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhcccchhhHHHHHHHHHHcC
Q 010961 261 FDRTTD---T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-AS-TLASVLSACSSLGFLEHGKQVHGHACKVG 334 (496)
Q Consensus 261 ~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 334 (496)
|++..+ | +...|..++..+...|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+.+.+.+
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 998765 3 3458899999999999999999999999984 454 33 78888888999999999999999999865
Q ss_pred CCchHHHHHHHHHHHH-hcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC----C---Chhh
Q 010961 335 VIDDVIVASALLDTYS-KRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----K---SLIS 403 (496)
Q Consensus 335 ~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~---~~~~ 403 (496)
+++...|........ ..|++++|..+|++.. +.++..|..++..+.+.|++++|..+|++... + ....
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 334555554443322 3699999999999887 55677889999999999999999999998765 1 3457
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
|..++..+.+.|+.+.|..+++++.+.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888899999999999999999999886
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.3e-11 Score=113.61 Aligned_cols=190 Identities=11% Similarity=-0.040 Sum_probs=91.4
Q ss_pred chhHHHHHHHHHHhcCCh-hhHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHH
Q 010961 206 DSVLGSSLVNLYGKCGDF-NSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGY 279 (496)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~ 279 (496)
+...+..+...+...|++ ++|...|++..+ | +...|..+..+|...|++++|.+.|++..+ |+...+..+...+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~ 180 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 334444444455555555 555555544432 2 233444444444444444444444444332 3333444444455
Q ss_pred HhC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------cchhhHHHHHHHHHHcCCC--chHH
Q 010961 280 ISN---------NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL--------GFLEHGKQVHGHACKVGVI--DDVI 340 (496)
Q Consensus 280 ~~~---------~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~ 340 (496)
... |++++|+..|++..+.. +.+...+..+..++... |++++|...|+++.+.... .+..
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 259 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD 259 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH
Confidence 555 55555555555555432 22344455555555554 5555555555555554210 3445
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTM 396 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 396 (496)
.+..+..+|...|++++|.+.|++.. +.+...+..+...+...|++++|.+.+.++
T Consensus 260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 260 LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55555555555555555555555544 223334444555555555555555544443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-11 Score=108.03 Aligned_cols=246 Identities=14% Similarity=0.053 Sum_probs=117.6
Q ss_pred HHHHHHHHHccchHHHHHHHHHHHHHc-------CCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHH
Q 010961 175 LATVIGACADLAALEYGKQIHSHILVN-------GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247 (496)
Q Consensus 175 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 247 (496)
+..+...+...|+++.|..+++++.+. ..+....++..+...+...|++++|...+++..+
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------------ 97 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA------------ 97 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------
Confidence 333344444444444444444444331 1222344556666666666777766666655431
Q ss_pred HHhcCChhHHHHHHHhcCC----CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhc
Q 010961 248 YANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFHKMRRN------GVLE-DASTLASVLSACSS 316 (496)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~l~~~~~~ 316 (496)
++++... ....++..+...+...|++++|...+++..+. +..| ....+..+...+..
T Consensus 98 ------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 165 (311)
T 3nf1_A 98 ------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN 165 (311)
T ss_dssp ------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 1111000 01334555666666666666666666665542 1112 33455666666777
Q ss_pred ccchhhHHHHHHHHHHc------C-CCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHH
Q 010961 317 LGFLEHGKQVHGHACKV------G-VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389 (496)
Q Consensus 317 ~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 389 (496)
.|++++|..++..+.+. + .+....++..+..+|...|++++|...+++.....+..
T Consensus 166 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------------- 228 (311)
T 3nf1_A 166 QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER----------------- 228 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----------------
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----------------
Confidence 77777777777776653 2 12234456677777777777777777777654210000
Q ss_pred HHHHhhCCCC------ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 010961 390 KHIFRTMPNK------SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463 (496)
Q Consensus 390 ~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (496)
-+...... ....+..+...+...+.+.++...++...... +.+..++..+..+|.+.|++++|...+++..
T Consensus 229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 229 --EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp --HHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00000000 01112222333334455555555555554431 2244556666666777777777777776655
Q ss_pred H
Q 010961 464 I 464 (496)
Q Consensus 464 ~ 464 (496)
+
T Consensus 306 ~ 306 (311)
T 3nf1_A 306 R 306 (311)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.9e-11 Score=105.79 Aligned_cols=226 Identities=12% Similarity=0.053 Sum_probs=154.6
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHc------CC
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRN-------GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV------GV 335 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 335 (496)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+.++.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346777778888888888888888887662 22334556777777888888888888888887764 22
Q ss_pred -CchHHHHHHHHHHHHhcCChhhHHHHHHhccc-------C----chhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----
Q 010961 336 -IDDVIVASALLDTYSKRGMPSDACKLFSELKV-------Y----DTILLNTMITVYSSCGRIEDAKHIFRTMPN----- 398 (496)
Q Consensus 336 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----- 398 (496)
+....++..+...|...|++++|...+++... + ....+..+...+...|++++|...++++.+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 33466788889999999999999999987762 1 234677788889999999999988887643
Q ss_pred --C----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC-------CCCCCH-------HHHHHHHHHHhccCchhhHHHH
Q 010961 399 --K----SLISWNSMIVGLSQNGSPIEALDLFCNMNKL-------DLRMDK-------FSLASVISACANISSLELGEQV 458 (496)
Q Consensus 399 --~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
+ ...++..+...|...|++++|.+.++++.+. ...|.. ..+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1 2346788889999999999999999988753 112211 1222333334455666677777
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 459 FARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
++...... +.+..++..+..+|.+.|++++|.++++
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77665432 3466889999999999999999999886
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-09 Score=100.91 Aligned_cols=167 Identities=13% Similarity=0.002 Sum_probs=86.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHchhccCCcC----HHHHHHHHHHHHccchHHHHHHHHHHHHHcCC-----Cc-chhH
Q 010961 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCD----AFILATVIGACADLAALEYGKQIHSHILVNGL-----DF-DSVL 209 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~ 209 (496)
....+...|++++|+..|++..+.. ...++ ..++..+..++...|+++.|...+.+..+... .+ ...+
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKEL--PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTG--GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH--hhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445566677777777777665521 11111 23455555666666666666666666554211 11 2335
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCC--CcchHHHHHHHHHhCCCHHH
Q 010961 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT--SSVMWNSMISGYISNNEDTE 287 (496)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 287 (496)
++.+...|...|++++|...+++..+ +.+....+ ...++..+...|...|++++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 240 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALE------------------------LAMDIQNDRFIAISLLNIANSYDRSGDDQM 240 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH------------------------HHHHcCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 55666666666776666666655432 00000000 02244455555555566666
Q ss_pred HHHHHHHHHHC----CCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 288 ALLLFHKMRRN----GVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 288 a~~~~~~m~~~----g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
|+..+++..+. +.+....++..+...+.+.|++++|...+++..+
T Consensus 241 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66655555441 1122244555555566666666666666666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.4e-09 Score=96.80 Aligned_cols=154 Identities=12% Similarity=0.038 Sum_probs=75.4
Q ss_pred HHHHHhcccchhhHHHHHHHHHHcCCC----chHHHHHHHHHHHHhcCChhhHHHHHHhcc----cCc-hhhHH-----H
Q 010961 310 VLSACSSLGFLEHGKQVHGHACKVGVI----DDVIVASALLDTYSKRGMPSDACKLFSELK----VYD-TILLN-----T 375 (496)
Q Consensus 310 l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~-----~ 375 (496)
+...+...|++++|...+.+..+.... ....++..+...+...|++++|...+++.. .++ +..+. .
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 333444445555555544444432111 112334444455555555555555555443 111 01111 1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhCCChhhHHHHHHHHHh----CCCCCCH-HHHHHHH
Q 010961 376 MITVYSSCGRIEDAKHIFRTMPNKS-------LISWNSMIVGLSQNGSPIEALDLFCNMNK----LDLRMDK-FSLASVI 443 (496)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~~-~~~~~l~ 443 (496)
.+..+...|++++|...+++...+. ...+..+...+...|++++|...+++... .|.+++. ..+..+.
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 2223445566666666666555421 11345566667777777777777766543 2212222 2455556
Q ss_pred HHHhccCchhhHHHHHHHHH
Q 010961 444 SACANISSLELGEQVFARVT 463 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~ 463 (496)
.++...|+.++|...++...
T Consensus 301 ~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 301 QLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 66667777777777776554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-10 Score=92.96 Aligned_cols=157 Identities=14% Similarity=0.043 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHh
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSS 382 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 382 (496)
.+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+++.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34444555556666666666665554432 2344555555666666666666666666554 2334455555555555
Q ss_pred cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHH
Q 010961 383 CGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459 (496)
Q Consensus 383 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (496)
.|++++|.+.++++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555432 234445555555555555555555555555442 334455555555555555555555555
Q ss_pred HHHHH
Q 010961 460 ARVTI 464 (496)
Q Consensus 460 ~~~~~ 464 (496)
+.+.+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-09 Score=97.66 Aligned_cols=196 Identities=14% Similarity=0.078 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhc-cCC--c-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCc----chh
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVE-RLQ--C-DAFILATVIGACADLAALEYGKQIHSHILVNGLDF----DSV 208 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 208 (496)
+..+...+...|++++|.+.+++....... +.. | ....+..+...+...|+++.|...+++..+..... ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344455555556666666555555442100 010 2 12233444455555666666666665555432211 123
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC----CCh-HHHH-----HHHHHHHhcCChhHHHHHHHhcCCCCc-------ch
Q 010961 209 LGSSLVNLYGKCGDFNSANQVLNMMKE----PDD-FCLS-----ALISGYANCGKMNDARRVFDRTTDTSS-------VM 271 (496)
Q Consensus 209 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~ 271 (496)
++..+...+...|++++|...+++..+ ++. ..+. ..+..+...|+.++|...+++...+.. ..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 444555556666666666666655431 111 1111 112224455556666555555544221 13
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRN----GVLEDA-STLASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
+..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+.....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445556666777777777776665432 211122 1333444455556666666666655443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.6e-10 Score=97.58 Aligned_cols=196 Identities=11% Similarity=-0.063 Sum_probs=122.6
Q ss_pred chhhhhhHHHHHhccCCCchHHHHHHHHHHHhc--C-ChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 010961 22 HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC--G-NPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98 (496)
Q Consensus 22 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 98 (496)
.+|..++.+..+.-. ++.. .+ .+ + +. + ++++|...|++. ...|...|++++|.+.|++.
T Consensus 2 ~~a~~~~~~a~k~~~-~~~~-~~-~~---~-~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 2 SDPVELLKRAEKKGV-PSSG-FM-KL---F-SGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CCHHHHHHHHHHHSS-CCCT-HH-HH---H-SCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhC-cCCC-cc-hh---c-CCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 356666666666542 2121 22 22 2 32 2 477777776553 55677778888888777766
Q ss_pred CC-----CC----hhhHHHHHHHHHhcCChhHHHHHHhhcCC-----CC----cccHHHHHHHHHHc-CCHHHHHHHHHH
Q 010961 99 PQ-----KN----DFSWNMLISGFAKAGELKTARTLFNDMPR-----RN----AIAWNSMIHCYVRN-GFAREAVRLFKE 159 (496)
Q Consensus 99 ~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~ 159 (496)
.+ .+ ..+|+.+..+|.+.|++++|+..+++..+ .+ ..+++.+..+|... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 43 11 34667777777777787777777776653 11 34677777888885 888888888887
Q ss_pred HHHchhccCCc-C-HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchh------HHHHHHHHHHhcCChhhHHHHHH
Q 010961 160 LNSDLVERLQC-D-AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV------LGSSLVNLYGKCGDFNSANQVLN 231 (496)
Q Consensus 160 ~~~~~~~~~~p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~ 231 (496)
..+.......+ . ..++..+...+...|++++|...+++..+........ .+..+..++...|++++|...|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76621000000 0 3456667777778888888888888777755432221 45566667777777888877777
Q ss_pred hcCC
Q 010961 232 MMKE 235 (496)
Q Consensus 232 ~~~~ 235 (496)
+..+
T Consensus 224 ~al~ 227 (292)
T 1qqe_A 224 EGQS 227 (292)
T ss_dssp GGGC
T ss_pred HHHh
Confidence 7664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=8.8e-10 Score=90.08 Aligned_cols=120 Identities=13% Similarity=0.030 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhc
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKA 116 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 116 (496)
.+..+...+...|++++|+..|+++.+ .+...+..+...+...|++++|.+.++++.+ .+...+..+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 344445555555555555555555443 1334444444455555555555555544432 2233334444444444
Q ss_pred CChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 117 GELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
|++++|.+.++++.+ .+...+..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 444444444443321 1233333344444444444444444444433
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-10 Score=111.72 Aligned_cols=160 Identities=11% Similarity=0.034 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHH
Q 010961 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITV 379 (496)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~ 379 (496)
+...++.+...+.+.|++++|...|++.++.. +.+...+..+..+|.+.|++++|++.|++.. +.+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888888888899999999998888864 4456778888888888899999988888876 4456678888888
Q ss_pred HHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHH
Q 010961 380 YSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456 (496)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 456 (496)
+...|++++|++.|++..+ | +...|+.+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 8888888888888887764 3 45678888888888888888888888888752 335677888888888888888888
Q ss_pred HHHHHHHH
Q 010961 457 QVFARVTI 464 (496)
Q Consensus 457 ~~~~~~~~ 464 (496)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-09 Score=90.68 Aligned_cols=201 Identities=10% Similarity=0.017 Sum_probs=134.4
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347 (496)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (496)
++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+....+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3456666777777788888888888877776433666666667777778888888888888877754 335667777778
Q ss_pred HHHhcCChhhHHHHHHhcc---cCch-------hhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC---hhhHHHHHHHHH
Q 010961 348 TYSKRGMPSDACKLFSELK---VYDT-------ILLNTMITVYSSCGRIEDAKHIFRTMPN--KS---LISWNSMIVGLS 412 (496)
Q Consensus 348 ~~~~~~~~~~a~~~~~~~~---~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~ 412 (496)
+|...|++++|...+++.. +.++ ..|..+...+...|++++|+..|++..+ |+ ...|..+...|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 8888888888888887776 2333 3466677777888888888888888775 33 345666666665
Q ss_pred hCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 413 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
.. +...++++...+ +.+...|.... ....+.+++|...+++..+.... +..+...+.
T Consensus 165 ~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~ 221 (228)
T 4i17_A 165 NN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQD 221 (228)
T ss_dssp HH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 44 334455555543 33444444433 33456789999999988876432 334444433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-09 Score=91.64 Aligned_cols=184 Identities=12% Similarity=-0.051 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHH
Q 010961 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMIT 378 (496)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~ 378 (496)
.|+..+......+...|++++|...|....+...+++...+..+..++...|++++|+..|++.. +.+...+..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45677778888899999999999999999998754677777779999999999999999999887 445667888999
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-Ch-------hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 010961 379 VYSSCGRIEDAKHIFRTMPN--K-SL-------ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD---KFSLASVISA 445 (496)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~--~-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~ 445 (496)
.+...|++++|...+++..+ | +. ..|..+...+...|++++|++.+++..+. .|+ ...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 99999999999999998764 3 33 45778888899999999999999999886 554 4677777777
Q ss_pred HhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+...|+ ..++.+...+. .+...+..+. ....|.+++|.+.++
T Consensus 163 ~~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~ 204 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLG 204 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 765544 33444444332 1233333222 233455677766654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.6e-09 Score=93.53 Aligned_cols=151 Identities=7% Similarity=-0.050 Sum_probs=72.4
Q ss_pred HHHhcCChhhHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChhHHHHHHHhcCCC-----C----cchHHHHHH
Q 010961 216 LYGKCGDFNSANQVLNMMKE-----PD----DFCLSALISGYANCGKMNDARRVFDRTTDT-----S----SVMWNSMIS 277 (496)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~ 277 (496)
.|...|++++|...|++..+ .+ ..+|+.+..+|.+.|++++|+..|++..+. + ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666655432 01 234555555555555555555555543320 0 224555555
Q ss_pred HHHhC-CCHHHHHHHHHHHHHCCC----CCC-HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH------HHHHHH
Q 010961 278 GYISN-NEDTEALLLFHKMRRNGV----LED-ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV------IVASAL 345 (496)
Q Consensus 278 ~~~~~-~~~~~a~~~~~~m~~~g~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 345 (496)
.|... |++++|+..|++..+... .+. ..++..+...+...|++++|...++.+.+....... ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55554 666666665555543210 000 223444455555555555555555555543322111 133444
Q ss_pred HHHHHhcCChhhHHHHHHhcc
Q 010961 346 LDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~ 366 (496)
..++...|++++|...|++..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=7.4e-10 Score=97.43 Aligned_cols=193 Identities=13% Similarity=0.028 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHhcccchhhHHHHHHHHHHc------CC-CchHHHHHHHHHHHHhcCChhhHHHHHHhccc-------C
Q 010961 303 DASTLASVLSACSSLGFLEHGKQVHGHACKV------GV-IDDVIVASALLDTYSKRGMPSDACKLFSELKV-------Y 368 (496)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~ 368 (496)
...++..+...+...|++++|...+..+.+. +. +....++..+..+|...|++++|.+.+.+... +
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4556677777778888888888888877654 22 33456788889999999999999999987761 1
Q ss_pred ----chhhHHHHHHHHHhcCCHHHHHHHHhhCCC-------C-C---hhhHHHHHHHHHhCCChhhHHHHHHHHHhC---
Q 010961 369 ----DTILLNTMITVYSSCGRIEDAKHIFRTMPN-------K-S---LISWNSMIVGLSQNGSPIEALDLFCNMNKL--- 430 (496)
Q Consensus 369 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--- 430 (496)
...++..+...+...|++++|...+++..+ + + ..++..+...|...|++++|...+++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 244677888899999999999998887653 1 2 356788889999999999999999988763
Q ss_pred ----CCCCC-HHHHHHHHHHHhccCchhhHHHHHHHHH--H-c--CCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 431 ----DLRMD-KFSLASVISACANISSLELGEQVFARVT--I-I--GLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 431 ----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~-~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
...|. ...+..+.......+....+..+..... + . ..+....++..+..+|.+.|++++|.++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 276 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12332 2334444444444333333333222111 1 1 112245778899999999999999999886
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=108.30 Aligned_cols=160 Identities=13% Similarity=0.006 Sum_probs=142.0
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+...+.+.|++++|...|+++++.. +.+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5689999999999999999999999998853 3457888999999999999999999999999875 4467889999999
Q ss_pred HHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHH
Q 010961 349 YSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~ 422 (496)
|...|++++|++.|++.. +.+...+..+..+|...|++++|++.|++..+ | +...|..+...|...|++++|.+
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 999999999999999887 45677899999999999999999999999875 4 56789999999999999999999
Q ss_pred HHHHHHhC
Q 010961 423 LFCNMNKL 430 (496)
Q Consensus 423 ~~~~m~~~ 430 (496)
.+++..+.
T Consensus 167 ~~~kal~l 174 (723)
T 4gyw_A 167 RMKKLVSI 174 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988763
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-08 Score=85.77 Aligned_cols=155 Identities=10% Similarity=-0.016 Sum_probs=64.9
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHcCC-CchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cC-----chhhHHHHHHH
Q 010961 308 ASVLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELK--VY-----DTILLNTMITV 379 (496)
Q Consensus 308 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-----~~~~~~~l~~~ 379 (496)
..+..++...|++++|.+++...+..+. ..+...+..+++.+.+.|+++.|.+.+++|. .| +..+...+..+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence 3344444444444544444444433332 1233444444444555555555555554444 12 11222222222
Q ss_pred --HHhcC--CHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhC-----CC----CCCHHHHHHHHH
Q 010961 380 --YSSCG--RIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-----DL----RMDKFSLASVIS 444 (496)
Q Consensus 380 --~~~~~--~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~----~p~~~~~~~l~~ 444 (496)
....| ++..|..+|+++.+ |+..+-..+..++.+.|++++|.+.++.+.+. +. +-|+.++..+|.
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 11112 45555555555443 22122223333555555555555555544331 00 223444434444
Q ss_pred HHhccCchhhHHHHHHHHHH
Q 010961 445 ACANISSLELGEQVFARVTI 464 (496)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~ 464 (496)
.....|+ .|.++++++.+
T Consensus 264 l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 264 LALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTC--TTHHHHHHHHH
T ss_pred HHHHhCh--HHHHHHHHHHH
Confidence 4334444 45555555554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-08 Score=86.81 Aligned_cols=206 Identities=9% Similarity=-0.076 Sum_probs=109.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcccchhhHHHHHHHHHHcCC--CchHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED---ASTLASVLSACSSLGFLEHGKQVHGHACKVGV--IDDVIVASAL 345 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 345 (496)
.+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...|+.+.+... +.....+..+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 34444455555555555555555555432 111 33444455555555555555555555555421 1123344445
Q ss_pred HHHHHh--------cCChhhHHHHHHhccc--Cc-hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 010961 346 LDTYSK--------RGMPSDACKLFSELKV--YD-TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414 (496)
Q Consensus 346 ~~~~~~--------~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (496)
..++.. .|++++|...|+++.. |+ ......+.......+. -...+..+...|.+.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~--------------~~~~~~~la~~~~~~ 161 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK--------------LARKQYEAARLYERR 161 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHc
Confidence 555555 5566666666655541 21 1111111110000000 011245667778888
Q ss_pred CChhhHHHHHHHHHhCCCCCC----HHHHHHHHHHHhcc----------CchhhHHHHHHHHHHcCCCch--HHHHHHHH
Q 010961 415 GSPIEALDLFCNMNKLDLRMD----KFSLASVISACANI----------SSLELGEQVFARVTIIGLDSD--QIISTSLV 478 (496)
Q Consensus 415 g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 478 (496)
|++++|+..|+++.+. .|+ ...+..+..+|... |++++|...++.+.+...... ......+.
T Consensus 162 g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 162 ELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp TCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 8888888888888775 232 34666777777755 788889999988877542211 24455566
Q ss_pred HHHHhcCChHHHHHh
Q 010961 479 DFYCKCGFIKMDEYY 493 (496)
Q Consensus 479 ~~~~~~g~~~~A~~~ 493 (496)
..+.+.|+++++..+
T Consensus 240 ~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 240 RARQRLTELEGDASL 254 (261)
T ss_dssp HHHHHHHHHHTCTTC
T ss_pred HHHHHHHHhhhhhHH
Confidence 666666666655443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6.4e-09 Score=91.35 Aligned_cols=201 Identities=12% Similarity=0.065 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHc------CC-CcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHH
Q 010961 172 AFILATVIGACADLAALEYGKQIHSHILVN------GL-DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244 (496)
Q Consensus 172 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 244 (496)
..++..+...+...|+++.|...+++..+. +. +....++..+...+...|++++|...+++..+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 114 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-------- 114 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 345555556666666666666666665543 11 223445666777777777777777776654421
Q ss_pred HHHHHhcCChhHHHHHHHhcCCC----CcchHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHH
Q 010961 245 ISGYANCGKMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRN------GVLE-DASTLASVLSA 313 (496)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~l~~~ 313 (496)
+++...+ ...++..+...+...|++++|...+++..+. +..| ...++..+...
T Consensus 115 ----------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 115 ----------------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC 178 (283)
T ss_dssp ----------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 0000000 0234444455555555555555555554432 1111 23344455555
Q ss_pred HhcccchhhHHHHHHHHHHc-------CCCc-hHHHHHHHHHHHHhcCC------hhhHHHHHHhcc---cCchhhHHHH
Q 010961 314 CSSLGFLEHGKQVHGHACKV-------GVID-DVIVASALLDTYSKRGM------PSDACKLFSELK---VYDTILLNTM 376 (496)
Q Consensus 314 ~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~---~~~~~~~~~l 376 (496)
+...|++++|...+.++.+. ...+ ....+..+...+...+. +..+...+.... +....++..+
T Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (283)
T 3edt_B 179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSL 258 (283)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 55566666666666555442 0111 11222222222222222 222223333322 1223456667
Q ss_pred HHHHHhcCCHHHHHHHHhhC
Q 010961 377 ITVYSSCGRIEDAKHIFRTM 396 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~ 396 (496)
...|...|++++|...+++.
T Consensus 259 a~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 259 GALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777777654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-07 Score=81.20 Aligned_cols=175 Identities=11% Similarity=0.029 Sum_probs=109.7
Q ss_pred HHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 257 ARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 257 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
|+..|++..+ ++..++..+..++...|++++|++++.+....|. .-+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555443 3344445666777777777777777777665543 13455566667777777777777777777766
Q ss_pred cCCCc-----hHHHHHHHHHHH--Hh--cCChhhHHHHHHhccc--CchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---
Q 010961 333 VGVID-----DVIVASALLDTY--SK--RGMPSDACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMPN--- 398 (496)
Q Consensus 333 ~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 398 (496)
. .| +..+...+..++ .. .++..+|..+|+++.. |+..+...++.++.+.|++++|++.++.+.+
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5 34 234444444442 22 2377788888887762 3222334444577788888888888765432
Q ss_pred ---------C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHH
Q 010961 399 ---------K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437 (496)
Q Consensus 399 ---------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 437 (496)
| ++.+...+|......|+ +|.+++.++++. .|+..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 2 55666556666666676 889999999986 56543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-08 Score=81.03 Aligned_cols=153 Identities=10% Similarity=0.013 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHH-HHhCC
Q 010961 342 ASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVG-LSQNG 415 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~-~~~~g 415 (496)
+......+...|++++|...|++.. +.++..+..+...+...|++++|...++++.+ |+...+..+... +...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence 3445566777788888888887766 45566777777888888888888888888765 433322222211 12223
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS-DQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 416 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
....|...+++..+.. +-+...+..+..++...|++++|...++++.+....+ +...+..+..++...|+.++|...+
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 3345677888877652 3357778888888888888888888888887755433 3567778888888888888887766
Q ss_pred h
Q 010961 495 M 495 (496)
Q Consensus 495 ~ 495 (496)
+
T Consensus 168 ~ 168 (176)
T 2r5s_A 168 R 168 (176)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-07 Score=86.49 Aligned_cols=118 Identities=11% Similarity=0.049 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhhHHHHHHHHHh-CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQ-NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
.|...+....+.++.+.|..+|++...|+ ...|......-.. .++.+.|..+|+...+. .+-++..+...++-...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence 34445555555566666666666663232 1222221111111 23567777777766654 12234444555555556
Q ss_pred cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.|+.+.|..+|+.+. .....|...++.=...|+.+.+.++++
T Consensus 367 ~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 367 IGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677777777776651 245566666665566677666666554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-07 Score=89.14 Aligned_cols=345 Identities=13% Similarity=0.063 Sum_probs=175.9
Q ss_pred CChHHHHHHhhhCCC--CChhhHHHHHHHHHhcCC-HHHHHHHHhhCCC------CChhhHHHHHHHHH----hcCChhH
Q 010961 55 GNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGH-KEKSLQLFNVMPQ------KNDFSWNMLISGFA----KAGELKT 121 (496)
Q Consensus 55 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~------~~~~~~~~l~~~~~----~~~~~~~ 121 (496)
|+++.+..+|++... |+...|..-+.-..+.++ .+....+|+.... .+...|...+..+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 788888888887765 777777777776666553 3445555555432 24455555555443 2345667
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 010961 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 122 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
+.++|++...-....+..+- ..|..+... .+..+...++.. ..+.+..|..+++.+...
T Consensus 108 vR~iy~rAL~~P~~~~~~lw-------------~~Y~~fE~~------~~~~~~~~~~~~--~~~~y~~ar~~y~~~~~~ 166 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELW-------------KDFENFELE------LNKITGKKIVGD--TLPIFQSSFQRYQQIQPL 166 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHH-------------HHHHHHHHH------HCHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhhHHHHH-------------HHHHHHHHH------hccccHHHHHHH--HhHHHHHHHHHHHHHHHH
Confidence 77777766541111112221 112222110 001111111111 112333344444433321
Q ss_pred CCCcchhHHHHHHHHHHhcC--C-----hhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC-CCcc
Q 010961 202 GLDFDSVLGSSLVNLYGKCG--D-----FNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD-TSSV 270 (496)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~ 270 (496)
-...+...|...+..-...+ - .+.+..+|+++.. .+...|-..+..+.+.|+.+.|..+++++.. |...
T Consensus 167 ~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~ 246 (493)
T 2uy1_A 167 IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGM 246 (493)
T ss_dssp HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS
T ss_pred HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcH
Confidence 00012223444443322111 0 2334556666553 3355677777777777888888888876543 2222
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCch
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRN---------GVLE---DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------g~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 338 (496)
.... .|....+.++. ++.+.+. +..+ ....|...+....+.++.+.|..+|..+ +.. ..+
T Consensus 247 ~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~ 318 (493)
T 2uy1_A 247 FLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVG 318 (493)
T ss_dssp HHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCC
T ss_pred HHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCC
Confidence 1111 12221111121 2222111 0001 1234555555555677788888888887 321 223
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 010961 339 VIVASALLDTYSKR-GMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414 (496)
Q Consensus 339 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (496)
..+|......-... ++.+.|..+|+... +.++..+...++...+.|+.+.|..+|+++.+ ....|...+..-...
T Consensus 319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHC
Confidence 44444333222222 35888888888776 23344555566666778888888888888743 566677777766777
Q ss_pred CChhhHHHHHHHHHh
Q 010961 415 GSPIEALDLFCNMNK 429 (496)
Q Consensus 415 g~~~~a~~~~~~m~~ 429 (496)
|+.+.+.++++++.+
T Consensus 398 G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 398 GSMELFRELVDQKMD 412 (493)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888887777653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.3e-08 Score=85.68 Aligned_cols=159 Identities=9% Similarity=-0.009 Sum_probs=111.6
Q ss_pred CchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHH-HHH
Q 010961 336 IDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNS-MIV 409 (496)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-l~~ 409 (496)
+.+...+..+...+...|++++|...|++.. +.+...+..+...+...|++++|...++++.. |+...... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 4445555666667777777777777777765 44556677777777777788888887777765 44332222 223
Q ss_pred HHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChH
Q 010961 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS-DQIISTSLVDFYCKCGFIK 488 (496)
Q Consensus 410 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 488 (496)
.+...++.+.|...+++..+.. +.+...+..+...+...|++++|...++.+.+..... +...+..|+.+|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3556677777888888877763 4467778888888888888888888888887765432 3667888888888888888
Q ss_pred HHHHhhh
Q 010961 489 MDEYYLM 495 (496)
Q Consensus 489 ~A~~~~~ 495 (496)
+|...++
T Consensus 273 ~a~~~~r 279 (287)
T 3qou_A 273 ALASXYR 279 (287)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 8876654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-08 Score=76.56 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=41.3
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 34455566666666777777777776666542 334556666666677777777777777666553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-08 Score=85.59 Aligned_cols=164 Identities=12% Similarity=0.021 Sum_probs=105.1
Q ss_pred hhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHH----------------HHHHHHhcCChHHHHHHhhhCCC
Q 010961 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANR----------------LLQMYMRCGNPTDALLLFDEMPR 69 (496)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~ 69 (496)
..+......+...|++++|...|+..++.. |+...++.. +...|.+.|++++|+..|++..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455566777888888888888888876 344435555 77777777777777777777654
Q ss_pred ---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcC--ChhHHHHHHhhcCCCCcc--cHHH
Q 010961 70 ---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAG--ELKTARTLFNDMPRRNAI--AWNS 139 (496)
Q Consensus 70 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~--~~~~ 139 (496)
.+...|..+..++...|++++|+..|++..+ | +..++..+...+...| +.+.+...++....++.. .+..
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 162 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3556777777777777777777777777654 3 4556666666665443 344556666666655433 3334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHH
Q 010961 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~ 176 (496)
+..++...|++++|+..|++..+ ..|+.....
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~-----l~P~~~~~~ 194 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVIL-----RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTT-----TSCCHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH-----hCCCHHHHH
Confidence 45555666777777777777766 556654333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-08 Score=86.20 Aligned_cols=159 Identities=10% Similarity=-0.020 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC--C-C---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHH
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR--R-N---CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KN----DFSWNMLI 110 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~ 110 (496)
.+-.+...+.+.|++++|+..|+.+.+ | + ..++..+..++.+.|++++|+..|++..+ |+ ...+..+.
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 445555556666666666666665543 2 2 34455555666666666666666665543 21 22344455
Q ss_pred HHHHh--------cCChhHHHHHHhhcCC--CC-cccH-----------------HHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 111 SGFAK--------AGELKTARTLFNDMPR--RN-AIAW-----------------NSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 111 ~~~~~--------~~~~~~a~~~~~~~~~--~~-~~~~-----------------~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
.++.. .|++++|+..|+++.+ |+ ...+ ..+...|.+.|++++|+..|++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555 6666666666665542 22 2222 4567778888888888888888877
Q ss_pred chhccCCc-CHHHHHHHHHHHHcc----------chHHHHHHHHHHHHHcCC
Q 010961 163 DLVERLQC-DAFILATVIGACADL----------AALEYGKQIHSHILVNGL 203 (496)
Q Consensus 163 ~~~~~~~p-~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~ 203 (496)
. .+..+ ....+..+..++... |++++|...++.+.+..+
T Consensus 177 ~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 177 A--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp H--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred H--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 2 11111 234566666666655 777888888888877543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-08 Score=80.80 Aligned_cols=149 Identities=10% Similarity=0.041 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHH-HHhcC
Q 010961 44 ANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISG-FAKAG 117 (496)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~-~~~~~ 117 (496)
+..+...+...|++++|+..|++..+ .+...+..+..++.+.|++++|+..+++... |+...+..+... +...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence 44555666666777777776666654 2445566666666666666666666666654 322222111111 11111
Q ss_pred ChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC---HHHHHHHHHHHHccchHHHH
Q 010961 118 ELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD---AFILATVIGACADLAALEYG 191 (496)
Q Consensus 118 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a 191 (496)
+..+|...|++..+ | +...+..+..++...|++++|...|++..+ ..|+ ...+..+..++...|+.+.+
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK-----VNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----hCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233444444332 2 344455555555555555555555555544 2222 22344444444444444444
Q ss_pred HHHHHH
Q 010961 192 KQIHSH 197 (496)
Q Consensus 192 ~~~~~~ 197 (496)
...|++
T Consensus 164 ~~~y~~ 169 (176)
T 2r5s_A 164 ASKYRR 169 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-08 Score=77.14 Aligned_cols=121 Identities=13% Similarity=0.128 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
+..+...+...|++++|..+++++.+ .+...+..+...+...|++++|...++++...+ +.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 44555566666666666666665542 356678888899999999999999999998864 55677888999999999
Q ss_pred CchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
|++++|...++.+.+... .+...+..++.++.+.|++++|.+.++
T Consensus 83 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 999999999999988653 356788889999999999999998875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.9e-08 Score=80.11 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=42.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHhcccchhhHHHHHHHHHHcCCCch
Q 010961 276 ISGYISNNEDTEALLLFHKMRRNGVLED-ASTLAS----------------VLSACSSLGFLEHGKQVHGHACKVGVIDD 338 (496)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 338 (496)
...+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|...++...+.. +.+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 34455666666666666666553 232 222222 3444444555555555555544443 223
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
...+..+..++...|++++|+..|++..
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444555555555555555554443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.1e-09 Score=81.32 Aligned_cols=136 Identities=8% Similarity=-0.055 Sum_probs=91.1
Q ss_pred HHhcCChhhHHHHHHhcccC---chhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHH
Q 010961 349 YSKRGMPSDACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 422 (496)
+...|++++|+..+....+. ++..+..+...|.+.|++++|++.|++..+ .+..+|..+..+|...|++++|+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 33445555555555555422 233444556666666666666666666543 356788888888888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHH-HHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQV-FARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 423 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
.|++..+.. +-+...|..+...+.+.|+++++.+. +++..+..+ -++.++......+.+.|+
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 998888752 33577888888888888888776554 577777543 256677777777777664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.5e-08 Score=80.46 Aligned_cols=173 Identities=13% Similarity=0.014 Sum_probs=137.1
Q ss_pred chhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC-CChhhHHHHHHHHHhcC----CHHHHHHHHh
Q 010961 22 HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-RNCFSWNAMIEGFMKLG----HKEKSLQLFN 96 (496)
Q Consensus 22 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 96 (496)
.+|...|+...+.| ++. ++..|...|...+++++|+..|++..+ .++.++..|...|.. + ++++|.+.|+
T Consensus 3 ~eA~~~~~~aa~~g---~~~-a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRR-AQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHTT---CHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 46777888888765 344 777899999999999999999998765 467788888888887 6 8999999999
Q ss_pred hCCC-CChhhHHHHHHHHHh----cCChhHHHHHHhhcCCCC-----cccHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 010961 97 VMPQ-KNDFSWNMLISGFAK----AGELKTARTLFNDMPRRN-----AIAWNSMIHCYVR----NGFAREAVRLFKELNS 162 (496)
Q Consensus 97 ~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~~~~ 162 (496)
+..+ .++..+..|...|.. .+++++|.++|++..+.+ +.++..|...|.. .+++++|+..|++...
T Consensus 78 ~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 78 KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 8866 567778888888877 789999999999988743 5788889999988 8899999999999877
Q ss_pred chhccCCcCHHHHHHHHHHHHcc------chHHHHHHHHHHHHHcCCC
Q 010961 163 DLVERLQCDAFILATVIGACADL------AALEYGKQIHSHILVNGLD 204 (496)
Q Consensus 163 ~~~~~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~~~ 204 (496)
...+...+..+...+... .++++|...++...+.|.+
T Consensus 158 -----~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 158 -----LSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp -----TSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred -----cCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 223444566666666533 2889999999998888754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-08 Score=89.46 Aligned_cols=216 Identities=9% Similarity=0.026 Sum_probs=140.6
Q ss_pred cCChhhHHHHHHhcCCCChHHHHHHHHHHHh-cCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010961 220 CGDFNSANQVLNMMKEPDDFCLSALISGYAN-CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298 (496)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 298 (496)
.|++++|.+++++..+..... +.+ .++++.|...|.+ ....|...|++++|...|.+..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~-------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~ 65 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS-------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEA 65 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc-------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 466777777777655311111 122 4677777666654 356788889999999988877653
Q ss_pred ----CCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc----CCCc-hHHHHHHHHHHHHhcCChhhHHHHHHhcccC
Q 010961 299 ----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV----GVID-DVIVASALLDTYSKRGMPSDACKLFSELKVY 368 (496)
Q Consensus 299 ----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 368 (496)
|-.+ -..+|..+...|...|++++|...+++..+. |-.. ...++..+..+|.. |++++|+..|++....
T Consensus 66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 2111 1346777778888889999999999887653 2111 24567777888877 8899888888876611
Q ss_pred -----c----hhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 369 -----D----TILLNTMITVYSSCGRIEDAKHIFRTMPN-----KS----LISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 369 -----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+ ..++..+...|...|++++|+..|++..+ ++ ...+..++.++...|++++|...|++.. .
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 1 34667777888888888888888877654 11 1245566667777788888888888877 3
Q ss_pred CCCCC------HHHHHHHHHHHhccCchhhHHHH
Q 010961 431 DLRMD------KFSLASVISACANISSLELGEQV 458 (496)
Q Consensus 431 ~~~p~------~~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
.|+ ......++.++ ..|+.+.+..+
T Consensus 224 --~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 224 --IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp --STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred --CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 332 12344455544 45666666553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-08 Score=100.03 Aligned_cols=167 Identities=10% Similarity=-0.018 Sum_probs=108.7
Q ss_pred HhCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 280 ISNNEDTEALLLFHKMR--------RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351 (496)
Q Consensus 280 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (496)
...|++++|++.+++.. +. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56777777777777776 32 13345566666667777777777777777777653 3455666777777777
Q ss_pred cCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHH
Q 010961 352 RGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFC 425 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 425 (496)
.|++++|++.|++.. +.+...+..+..++.+.|++++ +..|++..+ | +...|..+..++.+.|++++|++.|+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777777766 3455666777777777777777 777776653 2 44567777777777777777777777
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHhccCc
Q 010961 426 NMNKLDLRMD-KFSLASVISACANISS 451 (496)
Q Consensus 426 ~m~~~~~~p~-~~~~~~l~~~~~~~g~ 451 (496)
+..+. .|+ ...+..+..++...|+
T Consensus 559 ~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTT--STTHHHHHHHHHHHTC----
T ss_pred hhccc--CcccHHHHHHHHHHHHccCC
Confidence 76654 443 4456666666655444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.9e-07 Score=76.90 Aligned_cols=157 Identities=10% Similarity=-0.012 Sum_probs=93.2
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC----ChhhHHHHHHhcc-cCchhhHHHHHHHHH
Q 010961 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG----MPSDACKLFSELK-VYDTILLNTMITVYS 381 (496)
Q Consensus 307 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~-~~~~~~~~~l~~~~~ 381 (496)
+..+...+...+++++|...|....+.| ++..+..|...|.. + ++++|.+.|++.. ..++..+..|...|.
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLV 96 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333444444444445544444444433 22333334444443 3 4555555555444 223444445555554
Q ss_pred h----cCCHHHHHHHHhhCCCCC-----hhhHHHHHHHHHh----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 382 S----CGRIEDAKHIFRTMPNKS-----LISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 382 ~----~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
. .+++++|...|++..+.+ +..+..|...|.. .+++++|...|++..+. +++...+..|...|..
T Consensus 97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHc
Confidence 4 556666666666666532 5677788888887 77899999999998876 3344566666666654
Q ss_pred c-C-----chhhHHHHHHHHHHcCCCc
Q 010961 449 I-S-----SLELGEQVFARVTIIGLDS 469 (496)
Q Consensus 449 ~-g-----~~~~a~~~~~~~~~~~~~~ 469 (496)
. | ++++|...++...+.|...
T Consensus 175 g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 175 GEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp CBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3 2 8899999999888887543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.8e-08 Score=95.95 Aligned_cols=165 Identities=10% Similarity=-0.063 Sum_probs=132.6
Q ss_pred HhcCChhHHHHHHHhcC--------C---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010961 249 ANCGKMNDARRVFDRTT--------D---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317 (496)
Q Consensus 249 ~~~~~~~~a~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 317 (496)
...|++++|++.+++.. + .+...+..+...+...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 78899999999998876 3 345678888889999999999999999988753 44667788888889999
Q ss_pred cchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 010961 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFR 394 (496)
Q Consensus 318 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 394 (496)
|++++|...|+++.+.. +.+...+..+..++...|++++ ++.|++.. +.+...+..+..++.+.|++++|.+.|+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998875 3456778888999999999999 99998877 4566788889999999999999999999
Q ss_pred hCCC--CC-hhhHHHHHHHHHhCCC
Q 010961 395 TMPN--KS-LISWNSMIVGLSQNGS 416 (496)
Q Consensus 395 ~~~~--~~-~~~~~~l~~~~~~~g~ 416 (496)
+..+ |+ ...+..+..++...|+
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 9886 33 4567777777766555
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-07 Score=82.65 Aligned_cols=152 Identities=12% Similarity=-0.006 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHH-H
Q 010961 105 SWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI-G 180 (496)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll-~ 180 (496)
.+..+...+...|++++|...|++..+ | +...+..+...+.+.|++++|...+++... ..|+........ .
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-----~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-----QDQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-----GGCSHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-----hhcchHHHHHHHHH
Confidence 333444444444444444444444432 2 233444444444444444444444444433 223322221111 1
Q ss_pred HHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC---hHHHHHHHHHHHhcCChh
Q 010961 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD---DFCLSALISGYANCGKMN 255 (496)
Q Consensus 181 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~ 255 (496)
.+...++.+.+...+++..+..+. +...+..+...+...|++++|...|.++.+ |+ ...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 233334444444444444443322 334444444455555555555555544432 22 234444555555555555
Q ss_pred HHHHHHH
Q 010961 256 DARRVFD 262 (496)
Q Consensus 256 ~a~~~~~ 262 (496)
+|...|+
T Consensus 273 ~a~~~~r 279 (287)
T 3qou_A 273 ALASXYR 279 (287)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 5544444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.7e-07 Score=78.06 Aligned_cols=186 Identities=9% Similarity=-0.088 Sum_probs=129.1
Q ss_pred hhhhccCccchhhhhhHHHHHhccCCCchHHHHHH-------HHHHHhcCChHHHHHHhhhCCC--C-------C-----
Q 010961 13 QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRL-------LQMYMRCGNPTDALLLFDEMPR--R-------N----- 71 (496)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~--~-------~----- 71 (496)
.++ ..+++..|.+.|..+.+.. |+..+.|..+ ...+.+.++..+++..+....+ | +
T Consensus 15 ~~~-~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 15 VSM-LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLY 91 (282)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTT
T ss_pred hcc-cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcc
Confidence 344 5788999999999998886 6666688777 5666666666666666665544 1 1
Q ss_pred ----------hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCC-----c
Q 010961 72 ----------CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKAGELKTARTLFNDMPRRN-----A 134 (496)
Q Consensus 72 ----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~ 134 (496)
...+-.....+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 11233456677788888888888888875 443355566667788888888888888665421 2
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC--HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCC
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD--AFILATVIGACADLAALEYGKQIHSHILVNGLD 204 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 204 (496)
..+..+..++.+.|++++|++.|++... ....|. .........++.+.|+.++|..+|+++....+.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3677778888888888888888888765 222243 334555566677788888888888888776543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-07 Score=81.92 Aligned_cols=150 Identities=10% Similarity=-0.034 Sum_probs=101.9
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHcC----CCc-hH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRN----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVG----VID-DV 339 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 339 (496)
.+|+.+...|...|++++|+..|++..+. |-.. ...++..+...|.. |++++|...+++..+.. ..+ ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 35666777777778888777777765432 2111 13456677777777 99999999888876531 111 24
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhccc-----Cc----hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--------h
Q 010961 340 IVASALLDTYSKRGMPSDACKLFSELKV-----YD----TILLNTMITVYSSCGRIEDAKHIFRTMPNKSL--------I 402 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~ 402 (496)
.++..+..+|...|++++|+..|++... ++ ...+..+..++...|++++|...|++.. -++ .
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 5788889999999999999999998772 11 1256666777888899999999999876 222 1
Q ss_pred hHHHHHHHHHhCCChhhHHH
Q 010961 403 SWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~ 422 (496)
....++..+ ..|+.+.+.+
T Consensus 235 ~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHH-HhcCHHHHHH
Confidence 234445544 5667665555
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-07 Score=79.46 Aligned_cols=182 Identities=12% Similarity=0.023 Sum_probs=101.9
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCC-chHHHHHHHHHHHhcCChHHHHHHhhhCCC--CCh----hhHH
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNC----FSWN 76 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~ 76 (496)
++..+..+...+...|++++|...|+.+++..+..+ ...++..+..+|.+.|++++|+..|+++.+ |+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 455666677778888888888888888888754322 223677788888888888888888888764 322 1344
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCC--CCc-ccH----------------
Q 010961 77 AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR--RNA-IAW---------------- 137 (496)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~---------------- 137 (496)
.+..++...|.. .+ ..|..+...+...|++++|...|+++.+ |+. .++
T Consensus 83 ~~g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 444444432110 00 0011111222233445555555544443 211 111
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC----HHHHHHHHHHHHccchHHHHHHHHHHHHHcCC
Q 010961 138 -NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD----AFILATVIGACADLAALEYGKQIHSHILVNGL 203 (496)
Q Consensus 138 -~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 203 (496)
..+...+.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|+++.|.+.++.+...++
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRD-----YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHH-----CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 23455666777777777777776662 222 13455566666666777777776666665543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.4e-08 Score=76.25 Aligned_cols=132 Identities=6% Similarity=-0.069 Sum_probs=68.1
Q ss_pred hcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHH
Q 010961 250 NCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326 (496)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 326 (496)
..|++++|+..+++....+ ...+-.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 3344455555554444422 2344455566666666666666666665542 33455555566666666666666666
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHH-HHhcc---cCchhhHHHHHHHHHhc
Q 010961 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL-FSELK---VYDTILLNTMITVYSSC 383 (496)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~---~~~~~~~~~l~~~~~~~ 383 (496)
|+...+.. +.+...+..+..+|.+.|+.++|.+. +++.. +.++.+|......+...
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 66666543 23445555666666666665554443 34333 33334444444433333
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.9e-07 Score=76.13 Aligned_cols=120 Identities=13% Similarity=-0.033 Sum_probs=60.9
Q ss_pred HHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHH
Q 010961 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEAL 421 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 421 (496)
+...+...|++++|...|++...+++..+..+...+...|++++|...|++..+ .+...|..+...|...|++++|.
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~ 91 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 91 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHH
Confidence 334444455555555555555444444555555555555555555555554432 23344555555555555555555
Q ss_pred HHHHHHHhCCCCCC----------------HHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 422 DLFCNMNKLDLRMD----------------KFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 422 ~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
+.+++..+.. +.+ ...+..+..++...|++++|...++...+.
T Consensus 92 ~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 92 KDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555431 111 144555555555555555555555555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.2e-07 Score=75.95 Aligned_cols=125 Identities=10% Similarity=-0.034 Sum_probs=61.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHH
Q 010961 78 MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAV 154 (496)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 154 (496)
+...+...|++++|++.|++...++...+..+...+...|++++|.+.|++..+ .+..+|..+..++...|++++|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~ 91 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 91 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHH
Confidence 344444455555555555555444444555555555555555555555544432 23345555555555555555555
Q ss_pred HHHHHHHHchhcc-----------CCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 155 RLFKELNSDLVER-----------LQC-DAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 155 ~~~~~~~~~~~~~-----------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
+.|++..+..... ..| ....+..+..++...|+++.|...++...+..
T Consensus 92 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 92 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 5555555420000 111 11344555555555666666666666555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.2e-07 Score=76.77 Aligned_cols=181 Identities=10% Similarity=-0.041 Sum_probs=102.9
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH--HHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVL-E-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV--IVASAL 345 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 345 (496)
..+..+...+...|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|+.+.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34555667788888999999999888874211 1 1345666777888888888888888888876432211 233334
Q ss_pred HHHHHh------------------cCChhhHHHHHHhccc--Cc-hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhH
Q 010961 346 LDTYSK------------------RGMPSDACKLFSELKV--YD-TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404 (496)
Q Consensus 346 ~~~~~~------------------~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 404 (496)
..++.. .|++++|...|+++.. |+ +..+..........+.. ....
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~--------------~~~~ 150 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL--------------AKYE 150 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH--------------HHHH
Confidence 444433 2344455555544441 11 11111110000000000 0011
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-H---HHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-K---FSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 405 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
..+...|.+.|++++|+..|+++.+. .|+ . ..+..+..++.+.|++++|...++.+...+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 23455667777777777777777764 332 2 356667777777777777777777766644
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-07 Score=91.49 Aligned_cols=150 Identities=10% Similarity=-0.027 Sum_probs=112.8
Q ss_pred ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHH
Q 010961 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIF 393 (496)
Q Consensus 317 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 393 (496)
.|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 4457788899999999999999999999887 445678888999999999999999999
Q ss_pred hhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CchhhHHHHHHHHHHcCC
Q 010961 394 RTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI---SSLELGEQVFARVTIIGL 467 (496)
Q Consensus 394 ~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~ 467 (496)
++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..++... |++++|...+++..+.+.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 98764 356788899999999999999999999998863 44677888999999999 999999999999888664
Q ss_pred C
Q 010961 468 D 468 (496)
Q Consensus 468 ~ 468 (496)
.
T Consensus 160 ~ 160 (568)
T 2vsy_A 160 G 160 (568)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-07 Score=90.65 Aligned_cols=158 Identities=9% Similarity=-0.047 Sum_probs=117.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHH
Q 010961 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361 (496)
Q Consensus 282 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 361 (496)
.|++++|+..+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999988753 4457788889999999999999999999999865 44677889999999999999999999
Q ss_pred HHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC---CChhhHHHHHHHHHhCCC
Q 010961 362 FSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQN---GSPIEALDLFCNMNKLDL 432 (496)
Q Consensus 362 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~ 432 (496)
+++.. +.+...+..+..++...|++++|.+.+++..+ .+...+..+...+... |+.++|.+.+++..+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~- 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG- 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT-
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC-
Confidence 99887 45677899999999999999999999998764 3567888999999999 99999999999998864
Q ss_pred CCCHHHHHHH
Q 010961 433 RMDKFSLASV 442 (496)
Q Consensus 433 ~p~~~~~~~l 442 (496)
+.+...|..+
T Consensus 159 p~~~~~~~~l 168 (568)
T 2vsy_A 159 VGAVEPFAFL 168 (568)
T ss_dssp CCCSCHHHHT
T ss_pred CcccChHHHh
Confidence 3333344433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-06 Score=76.56 Aligned_cols=155 Identities=12% Similarity=-0.096 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhccc--C-ch------hhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hh
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELKV--Y-DT------ILLNTMITVYSSCGRIEDAKHIFRTMPN-----KS----LI 402 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~ 402 (496)
.+...+..+...|++++|.+.+.+... + .. ..+..+...+...|++++|...+++..+ .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566777888888888888876551 1 11 1234455667778899999888876542 11 34
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhccCchhhHHHHHHHHHHcC----CC-chH
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRMD-----KFSLASVISACANISSLELGEQVFARVTIIG----LD-SDQ 471 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~ 471 (496)
+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|...+++..+.. .. .-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999988731 01222 2588889999999999999999999876532 11 126
Q ss_pred HHHHHHHHHHHhcCChHHH-HHhhh
Q 010961 472 IISTSLVDFYCKCGFIKMD-EYYLM 495 (496)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A-~~~~~ 495 (496)
.++..+..+|.+.|+.++| ...++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 7888999999999999999 66554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-06 Score=76.74 Aligned_cols=195 Identities=12% Similarity=-0.065 Sum_probs=129.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH---HHHHHHHHHHHhcCChhhHHHHHHhcccC
Q 010961 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV---IVASALLDTYSKRGMPSDACKLFSELKVY 368 (496)
Q Consensus 292 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 368 (496)
+..+......|+..+...+...+.-.- +.+.......+. ..+...+..+...|++++|...+++....
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 444444345677777666666553221 111111111212 22333466778888999998888876621
Q ss_pred ---ch------hhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHh-
Q 010961 369 ---DT------ILLNTMITVYSSCGRIEDAKHIFRTMPN-----KS----LISWNSMIVGLSQNGSPIEALDLFCNMNK- 429 (496)
Q Consensus 369 ---~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~- 429 (496)
++ ..+..+...+...|++++|...+++..+ ++ ..+++.+...|...|++++|+..++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 1233466667777889999888887642 22 23688999999999999999999999874
Q ss_pred ---C-CCCCC-HHHHHHHHHHHhccCchhhHHHHHHHHHHc----CCCc-hHHHHHHHHHHHHhcCC-hHHHHHhhh
Q 010961 430 ---L-DLRMD-KFSLASVISACANISSLELGEQVFARVTII----GLDS-DQIISTSLVDFYCKCGF-IKMDEYYLM 495 (496)
Q Consensus 430 ---~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~-~~~A~~~~~ 495 (496)
. +..|. ..++..+...|.+.|++++|...+++..+. +..+ -..++..+..+|.+.|+ +++|.+.++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 1 22222 347888999999999999999999977642 2222 26788999999999995 599988775
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.8e-06 Score=72.93 Aligned_cols=214 Identities=7% Similarity=-0.032 Sum_probs=146.2
Q ss_pred HhcC-ChhHHHHHHHhcCCCC---cchHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hcc-
Q 010961 249 ANCG-KMNDARRVFDRTTDTS---SVMWNSMISGYISNN--EDTEALLLFHKMRRNGVLEDASTLASVLSAC----SSL- 317 (496)
Q Consensus 249 ~~~~-~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~----~~~- 317 (496)
.+.| ..++|+++++.+...+ ..+|+.--..+...| +++++++.++.+.... +-+...++.--..+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 3444 4468888888776532 346777777777777 8888888888888753 23334444433333 333
Q ss_pred --cchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh--hHHHHHHhcc---cCchhhHHHHHHHHHhcCC-----
Q 010961 318 --GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS--DACKLFSELK---VYDTILLNTMITVYSSCGR----- 385 (496)
Q Consensus 318 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~----- 385 (496)
++++++..+++.+.+.. +-+..+++.-.-++...|.++ ++++.++++. +.|...|+.-...+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhh
Confidence 67888888888888765 456667777777777778777 8888888877 4455566666666666665
Q ss_pred -HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhh-HHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCchhhHHHH
Q 010961 386 -IEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIE-ALDLFCNMNKLD--LRMDKFSLASVISACANISSLELGEQV 458 (496)
Q Consensus 386 -~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
++++++.++++.. .|...|+-+...+.+.|+... +..+..++.+.+ -+.+...+..+..++.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 7777777776653 366778777777777777444 445666555432 134667788888888888888888888
Q ss_pred HHHHHH
Q 010961 459 FARVTI 464 (496)
Q Consensus 459 ~~~~~~ 464 (496)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.9e-06 Score=72.85 Aligned_cols=131 Identities=11% Similarity=0.014 Sum_probs=62.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhcccchhhHHHHHHHHHHc-----CCCc-hHHHHH
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVL-ED----ASTLASVLSACSSLGFLEHGKQVHGHACKV-----GVID-DVIVAS 343 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~ 343 (496)
+...+...|++++|+..+++....... ++ ..+++.+...|...|++++|...++++.+. +..+ ...++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 344444455555565555555542111 11 123444555555555555555555554421 1111 112344
Q ss_pred HHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC-C-ChhhHHHHHHHHHhCCC-hhhH
Q 010961 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-K-SLISWNSMIVGLSQNGS-PIEA 420 (496)
Q Consensus 344 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~g~-~~~a 420 (496)
.+..+|...|++++|...+++.. ++...... + -..+|..+..+|.+.|+ .++|
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A 256 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAI------------------------EISCRINSMALIGQLYYQRGECLRKLEYEEAEI 256 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH------------------------HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 44445555555555554444322 11111111 1 13466777777777774 4777
Q ss_pred HHHHHHHHh
Q 010961 421 LDLFCNMNK 429 (496)
Q Consensus 421 ~~~~~~m~~ 429 (496)
.+.+++...
T Consensus 257 ~~~~~~Al~ 265 (293)
T 3u3w_A 257 EDAYKKASF 265 (293)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.3e-06 Score=71.51 Aligned_cols=136 Identities=10% Similarity=-0.009 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcc--cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-C----hhhHHHHHHHHHh
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-S----LISWNSMIVGLSQ 413 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~----~~~~~~l~~~~~~ 413 (496)
....+...+...|++++|.++|+.+. .|+......+...+.+.+++++|+..|+..... + ...+..+..++..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 44556777888999999999999887 343335556666888999999999999877652 2 2367788899999
Q ss_pred CCChhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 414 NGSPIEALDLFCNMNKLDLRMD--KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++..... +......|.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P--~~~~~~aL~ 248 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP--EPKVAAALK 248 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC--CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cHHHHHHHh
Confidence 9999999999999885433254 33566677788899999999999999988654 455555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.2e-07 Score=81.45 Aligned_cols=94 Identities=5% Similarity=-0.060 Sum_probs=54.2
Q ss_pred hhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHH
Q 010961 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEG 81 (496)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 81 (496)
+..+..+...+...|++++|...|+..++.. |....++..+...|.+.|++++|+..+++..+ .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445555555666666666666666666654 33333555666666666666666666665554 234455556666
Q ss_pred HHhcCCHHHHHHHHhhCCC
Q 010961 82 FMKLGHKEKSLQLFNVMPQ 100 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~ 100 (496)
+...|++++|+..|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-07 Score=80.73 Aligned_cols=94 Identities=9% Similarity=-0.118 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (496)
.+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+..+.+.. +.+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444455555555555555555554431 2244445555555555555555555555555432 233444555555555
Q ss_pred hcCChhhHHHHHHhcc
Q 010961 351 KRGMPSDACKLFSELK 366 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~~ 366 (496)
..|++++|...|++..
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5556655555555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.53 E-value=5.2e-07 Score=70.29 Aligned_cols=97 Identities=14% Similarity=0.039 Sum_probs=70.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
+...+..+...+.+.|++++|...|++... | +...|..+..+|...|++++|+..|++..+.. +.++..|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 344555566666677777777777766653 3 56677778888888888888888888887753 3356777888888
Q ss_pred HhccCchhhHHHHHHHHHHcC
Q 010961 446 CANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~ 466 (496)
+...|++++|...|++..+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888887754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-05 Score=67.87 Aligned_cols=222 Identities=6% Similarity=-0.049 Sum_probs=166.7
Q ss_pred HhcCC-hhhHHHHHHhcCC--CC-hHHHHHHHHHHHhcC--ChhHHHHHHHhcCCC---CcchHHHHHHHH----HhC--
Q 010961 218 GKCGD-FNSANQVLNMMKE--PD-DFCLSALISGYANCG--KMNDARRVFDRTTDT---SSVMWNSMISGY----ISN-- 282 (496)
Q Consensus 218 ~~~~~-~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~---~~~~~~~l~~~~----~~~-- 282 (496)
.+.|. .++|+..++.+.. |+ ...|+.--..+...+ ++++++++++.+... +..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 34444 4689999998875 43 456777777888888 999999999987763 345666655555 455
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchh--hHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC-----
Q 010961 283 -NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE--HGKQVHGHACKVGVIDDVIVASALLDTYSKRGM----- 354 (496)
Q Consensus 283 -~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 354 (496)
+++++++.+++.+.+.. +-+...+..-.-.+.+.|.++ ++.+.++.+.+.. +-|...++.....+...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 78999999999999863 557777777777777788888 9999999999876 4566677777777777776
Q ss_pred -hhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHH-HHHHHhhCCC------CChhhHHHHHHHHHhCCChhhHHHH
Q 010961 355 -PSDACKLFSELK---VYDTILLNTMITVYSSCGRIED-AKHIFRTMPN------KSLISWNSMIVGLSQNGSPIEALDL 423 (496)
Q Consensus 355 -~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~ 423 (496)
++++++.+++.. +.|...|+.+...+.+.|+... +..+..++.+ ++...+..+...|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 788888888776 6677889888888888887444 5556666543 3567888999999999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHH
Q 010961 424 FCNMNKLDLRM-DKFSLASV 442 (496)
Q Consensus 424 ~~~m~~~~~~p-~~~~~~~l 442 (496)
++.+.+. +.| ....|+..
T Consensus 281 ~~~l~~~-~Dpir~~yW~~~ 299 (306)
T 3dra_A 281 YDLLKSK-YNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHT-TCGGGHHHHHHH
T ss_pred HHHHHhc-cChHHHHHHHHH
Confidence 9999864 244 44445433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.3e-07 Score=73.43 Aligned_cols=119 Identities=14% Similarity=-0.020 Sum_probs=57.5
Q ss_pred hcCChhHHHH---HHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchh-ccCCc-CHHHHHHHHHHHHccchHH
Q 010961 115 KAGELKTART---LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV-ERLQC-DAFILATVIGACADLAALE 189 (496)
Q Consensus 115 ~~~~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~p-~~~~~~~ll~~~~~~~~~~ 189 (496)
..|++++|.+ .+..-+.....++..+...+...|++++|...+++...... .+..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 43332222344555566666666666666666665544110 00111 2234444555555666666
Q ss_pred HHHHHHHHHHHc----CCC--cchhHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 190 YGKQIHSHILVN----GLD--FDSVLGSSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 190 ~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
.|...+++..+. +.. .....+..+...+...|++++|...+++.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666655554442 111 12234555566666666666666666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.9e-07 Score=66.50 Aligned_cols=102 Identities=10% Similarity=0.025 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 375 TMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
.....|.+.|++++|++.|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|+
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCC
Confidence 344444455555555555554432 345666677777777777777777777776653 3456677777777777777
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 452 LELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
+++|...|++..+..+. +......|.
T Consensus 97 ~~~A~~~~~~al~l~P~-~~~a~~~l~ 122 (126)
T 4gco_A 97 WSKAQRAYEDALQVDPS-NEEAREGVR 122 (126)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcC-CHHHHHHHH
Confidence 77777777777664322 334444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-06 Score=68.65 Aligned_cols=94 Identities=10% Similarity=-0.032 Sum_probs=83.5
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 479 (496)
+...+..+...+.+.|++++|...|++..... |.+...|..+..++...|++++|...|++..+..+. ++..+..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 44578888999999999999999999999873 457889999999999999999999999999987643 6788999999
Q ss_pred HHHhcCChHHHHHhhh
Q 010961 480 FYCKCGFIKMDEYYLM 495 (496)
Q Consensus 480 ~~~~~g~~~~A~~~~~ 495 (496)
+|.+.|++++|.+.++
T Consensus 113 ~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFE 128 (151)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 9999999999999875
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-06 Score=64.50 Aligned_cols=111 Identities=12% Similarity=0.139 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
+..+...+...|++++|.+.++++.+ .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 33344444444444444444444332 345667777888888888888888888887753 44667788888888888
Q ss_pred CchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
|++++|...++.+.+... .+...+..+..++.+.|
T Consensus 91 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 91 GDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcc
Confidence 888888888888877543 24455666666655443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-05 Score=70.68 Aligned_cols=169 Identities=8% Similarity=-0.014 Sum_probs=102.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhcccchhhHHHHHHHHHHcCCC---c--hHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED-A----STLASVLSACSSLGFLEHGKQVHGHACKVGVI---D--DVI 340 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~ 340 (496)
.+...+..+...|++++|++.+.+..+...... . ..+..+...+...|++++|...+....+.... + ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456677778888888888877766432111 1 11223334455666777777777766543111 1 133
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCCh
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSP 417 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 417 (496)
+++.+...|...|++++|...|++.. ++++..... ...++..+...|...|++
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal------------------------~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQIL------------------------KQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 56666667777777777776666432 222222221 124677788888888888
Q ss_pred hhHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCchhhH-HHHHHHHH
Q 010961 418 IEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLELG-EQVFARVT 463 (496)
Q Consensus 418 ~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 463 (496)
++|+..+++..+. +..+ -..+|..+..++.+.|++++| ...+++..
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8888888876542 1111 156778888888888998888 77677554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-06 Score=65.49 Aligned_cols=113 Identities=8% Similarity=-0.078 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
.+..+...+...|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..++..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 344444555555555555555555433 355677788888888899999999988888753 4467788888888889
Q ss_pred cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
.|++++|...+++..+... .+...+..+..++.+.|+
T Consensus 97 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhcC
Confidence 9999999999998877542 245677777777776653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-06 Score=65.75 Aligned_cols=114 Identities=11% Similarity=-0.012 Sum_probs=79.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
.+..+...+...|+++.|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 344444445555555555555554432 345677778888888888888888888887752 4456778888888888
Q ss_pred cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487 (496)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 487 (496)
.|++++|...++...+... .+...+..+..++.+.|++
T Consensus 93 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 8888888888888877643 2566777788888777765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-06 Score=71.23 Aligned_cols=137 Identities=11% Similarity=-0.016 Sum_probs=66.5
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc----CCC--c
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRN----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV----GVI--D 337 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~ 337 (496)
..++..+...+...|++++|...+++.... +..| ....+..+...+...|++++|...+.+..+. +.. .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344555555556666666666665555431 1111 2233444444555555666555555554432 101 1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhhHHHHHHHHHhCC
Q 010961 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQNG 415 (496)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~g 415 (496)
....+..+...+...|++++|...+++.. .+......+. ..++..+...+...|
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSL------------------------VYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------------HHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------------------HHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 12334445555555555555555555322 1111111111 123455666677777
Q ss_pred ChhhHHHHHHHHHh
Q 010961 416 SPIEALDLFCNMNK 429 (496)
Q Consensus 416 ~~~~a~~~~~~m~~ 429 (496)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-06 Score=68.52 Aligned_cols=124 Identities=13% Similarity=-0.025 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHH
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLS 412 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 412 (496)
...+..+...+...|++++|...|++.. +.+...+..+...+...|++++|...+++..+ .+...|..+...+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3456667777778888888888887765 34555666677777777777777777766553 24456666777777
Q ss_pred hCCChhhHHHHHHHHHhCCCCCCHHHHHHHH--HHHhccCchhhHHHHHHHHH
Q 010961 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVI--SACANISSLELGEQVFARVT 463 (496)
Q Consensus 413 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~ 463 (496)
..|++++|...+++..+.. +.+...+..+. ..+...|++++|...++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777766642 22334443332 23556677777777666543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.8e-06 Score=67.49 Aligned_cols=120 Identities=11% Similarity=-0.017 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
+..+...+...|+++.|...|++..+ .+..++..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 44445555555555555555555432 234445555555555555555555555555432 23444555555555555
Q ss_pred CchhhHHHHHHHHHHcCCCchHHHH--HHHHHHHHhcCChHHHHHhh
Q 010961 450 SSLELGEQVFARVTIIGLDSDQIIS--TSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~ 494 (496)
|++++|...+++..+.... +...+ ..++..+.+.|++++|.+.+
T Consensus 95 ~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5555555555555543321 22222 22222344555555555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.3e-06 Score=62.93 Aligned_cols=94 Identities=7% Similarity=-0.023 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (496)
.+......|.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++..++.+ +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45555666666666777766666666542 3345566666666666666666666666666653 334555666666666
Q ss_pred hcCChhhHHHHHHhcc
Q 010961 351 KRGMPSDACKLFSELK 366 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~~ 366 (496)
..|++++|++.|++..
T Consensus 93 ~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 93 AMREWSKAQRAYEDAL 108 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6666666666666555
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-06 Score=64.51 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 010961 340 IVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQ 413 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 413 (496)
..+..+...+...|++++|...|++.. +.+...+..+...+...|++++|...+++..+ .+...+..+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 344444555555555555555555544 22344555555555556666666655555442 345677788888888
Q ss_pred CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCch
Q 010961 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 452 (496)
.|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 899999999998887763 34666777777777776664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3e-07 Score=82.80 Aligned_cols=91 Identities=11% Similarity=-0.062 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHH
Q 010961 104 FSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVI 179 (496)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll 179 (496)
..|..+..++.+.|++++|+..|++..+ .+..+|..+..+|...|++++|+..|++..+ +.| +...+..+.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----l~P~~~~a~~~l~ 271 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ-----LYPNNKAAKTQLA 271 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HCCCCHHHHHHHH
Confidence 4555566666666666666666665542 2455666666667777777777777776666 233 345566666
Q ss_pred HHHHccchHHHH-HHHHHHHH
Q 010961 180 GACADLAALEYG-KQIHSHIL 199 (496)
Q Consensus 180 ~~~~~~~~~~~a-~~~~~~~~ 199 (496)
.++...|+.+++ ...+..|.
T Consensus 272 ~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 272 VCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666 33444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-06 Score=69.70 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=59.7
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHH-HHhcCCH--HHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITV-YSSCGRI--EDA 389 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~--~~a 389 (496)
..|++++|...+....+.. +.+...+..+..+|...|++++|...|++.. +.++..+..+... +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4455566666666555543 2344555566666666666666666666554 2233344444444 4444554 555
Q ss_pred HHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 390 KHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 390 ~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
...++++.+ | +...+..+...|...|++++|...++++.+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 555544432 2 3445556666666666666666666666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-05 Score=60.37 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=53.8
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (496)
..|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 345555555666666666666666655532 2344555555555666666666666666655543 23444555556666
Q ss_pred HhcCChhhHHHHHHhcc
Q 010961 350 SKRGMPSDACKLFSELK 366 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~ 366 (496)
...|++++|...++++.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 66666666666665544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-06 Score=70.15 Aligned_cols=116 Identities=8% Similarity=0.039 Sum_probs=95.2
Q ss_pred HhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHH-HHhCCCh--hhH
Q 010961 350 SKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVG-LSQNGSP--IEA 420 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~-~~~~g~~--~~a 420 (496)
...|++++|...+++.. +.+...+..+...|...|++++|...|++..+ .+...+..+... +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 35678888988888776 55678899999999999999999999998875 366778888888 7789998 999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 421 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
...++++.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999998863 4467788899999999999999999999998854
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-05 Score=61.28 Aligned_cols=112 Identities=5% Similarity=-0.039 Sum_probs=69.8
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3456666667777777777777777766542 3355666666666777777777777777776653 3345566666677
Q ss_pred HHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHh
Q 010961 349 YSKRGMPSDACKLFSELK---VYDTILLNTMITVYSS 382 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 382 (496)
+...|++++|.+.|++.. +.+...+..+...+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 777777777777776655 2233344444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=5.6e-07 Score=81.05 Aligned_cols=146 Identities=10% Similarity=-0.015 Sum_probs=97.4
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cC-c---------------hhhHHHHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VY-D---------------TILLNTMI 377 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~---------------~~~~~~l~ 377 (496)
..+++++|...+....+.. +.+...+..+...+...|++++|+..|++.. .| + ...|..+.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 4566677776666544321 2245667778888888888888888888776 22 2 35667777
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhh
Q 010961 378 TVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454 (496)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 454 (496)
.+|.+.|++++|+..+++..+ .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.++
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776653 345667777777777777777777777776652 3355666677777777777776
Q ss_pred H-HHHHHHHH
Q 010961 455 G-EQVFARVT 463 (496)
Q Consensus 455 a-~~~~~~~~ 463 (496)
+ ...++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 44555554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=68.19 Aligned_cols=99 Identities=11% Similarity=-0.049 Sum_probs=84.8
Q ss_pred cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
+.+...+..+...+...|++++|...|++... .+...|..+..+|...|++++|+..+++..... +.+...+..+.
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 33555677788899999999999999998764 367788899999999999999999999998863 44678889999
Q ss_pred HHHhccCchhhHHHHHHHHHHcC
Q 010961 444 SACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
.++...|++++|...++...+..
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999887753
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=6.3e-07 Score=73.95 Aligned_cols=118 Identities=12% Similarity=0.037 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch---------------
Q 010961 45 NRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--K-ND--------------- 103 (496)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~--------------- 103 (496)
+..+......|+++++.+.++...+ .....+..+...+...|++++|+..|++..+ | +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 3445555566777777776664433 1334566666777777777777777776653 1 11
Q ss_pred -hhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 104 -FSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 104 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
..+..+..++...|++++|+..++...+ .+..++..+..++...|++++|++.|++..+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555432 2344555555555555666666665555554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-06 Score=67.17 Aligned_cols=104 Identities=17% Similarity=0.045 Sum_probs=85.8
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-
Q 010961 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K- 399 (496)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~- 399 (496)
.++.+.+.. +.+...+..+...+...|++++|...|+... +.++..|..+..++...|++++|...|++... |
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 344444432 3355667778889999999999999999887 55777888999999999999999999998864 3
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+...+..+..+|...|++++|...|++..+.
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5678888999999999999999999998875
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-05 Score=60.93 Aligned_cols=93 Identities=10% Similarity=-0.044 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
+..+...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH
Confidence 44445555555555555555555442 345677778888888888888888888877753 34566777888888888
Q ss_pred CchhhHHHHHHHHHHcC
Q 010961 450 SSLELGEQVFARVTIIG 466 (496)
Q Consensus 450 g~~~~a~~~~~~~~~~~ 466 (496)
|++++|...+++..+..
T Consensus 86 ~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 86 KEYASALETLDAARTKD 102 (126)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhC
Confidence 88888888888776643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.9e-06 Score=71.03 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
..|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|...++...+... -+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence 456666677777777777777777766652 33556666777777777777777777777666432 2445666666666
Q ss_pred HhcCChHHHH
Q 010961 482 CKCGFIKMDE 491 (496)
Q Consensus 482 ~~~g~~~~A~ 491 (496)
.+.|+.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 6655555444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00017 Score=67.36 Aligned_cols=158 Identities=8% Similarity=-0.050 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHH----HHHHHHHHHHccchHHHHHHHHHHHHHc----CCCc-ch
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF----ILATVIGACADLAALEYGKQIHSHILVN----GLDF-DS 207 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 207 (496)
+..+...|...|++++|.+.+...... .+..++.. +.+.+-..+...|+.+.+..++...... +..+ -.
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEY--MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHH--HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 566777778888888888877776552 11112221 1222223334556777777777665442 2221 23
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCC--------C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC-----CC-----
Q 010961 208 VLGSSLVNLYGKCGDFNSANQVLNMMKE--------P-DDFCLSALISGYANCGKMNDARRVFDRTTD-----TS----- 268 (496)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----- 268 (496)
.++..+...+...|++++|..+++.+.. + ....+..++..|...|++++|...+++... ++
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 4666777778888888888777766541 1 123556666666666666666666654432 11
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMR 296 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 296 (496)
...+..+...+...|++++|...|.+..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1234455555666677777766665553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=8.6e-05 Score=65.79 Aligned_cols=165 Identities=12% Similarity=-0.018 Sum_probs=80.0
Q ss_pred hcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-c-chhhH
Q 010961 250 NCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNN-EDTEALLLFHKMRRNGVLEDASTLASVLSACSSL-G-FLEHG 323 (496)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-~-~~~~a 323 (496)
..+..++|+++++++...+ ..+|+.--..+...| .+++++..++.+.... +-+...++.-...+.+. + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3344456666666655422 234555545555555 3666666666666542 33444444444444433 4 55566
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh--------hHHHHHHhcc---cCchhhHHHHHHHHHhcCC-------
Q 010961 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPS--------DACKLFSELK---VYDTILLNTMITVYSSCGR------- 385 (496)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~------- 385 (496)
..+++.+.+.. +-+...++.-.-++...|.++ ++++.++++. +.|...|+.....+.+.++
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 66666665543 234444444433333333333 5555555554 3344445555555544443
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC
Q 010961 386 IEDAKHIFRTMPN---KSLISWNSMIVGLSQNGS 416 (496)
Q Consensus 386 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 416 (496)
++++++.+++... .|...|+-+-..+.+.|+
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 3455555544432 234445444444444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1e-05 Score=62.43 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=82.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
+...+..+...+...|++++|...|++... | +...|..+..+|...|++++|+..+++..... +.++..+..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 445666778889999999999999998764 3 66788889999999999999999999998863 4467788889999
Q ss_pred HhccCchhhHHHHHHHHHHcC
Q 010961 446 CANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~ 466 (496)
+...|++++|...++...+..
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999887643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.6e-06 Score=59.81 Aligned_cols=96 Identities=15% Similarity=0.004 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 010961 370 TILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM--DKFSLASVIS 444 (496)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~ 444 (496)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34445555555556666666665555442 345566667777777777777777777777652 33 4666777777
Q ss_pred HHhcc-CchhhHHHHHHHHHHcC
Q 010961 445 ACANI-SSLELGEQVFARVTIIG 466 (496)
Q Consensus 445 ~~~~~-g~~~~a~~~~~~~~~~~ 466 (496)
++... |++++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777 77777777777776544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-05 Score=60.88 Aligned_cols=92 Identities=9% Similarity=-0.181 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 467778889999999999999999998863 557889999999999999999999999999887533 577889999999
Q ss_pred HhcCChHHHHHhhh
Q 010961 482 CKCGFIKMDEYYLM 495 (496)
Q Consensus 482 ~~~g~~~~A~~~~~ 495 (496)
...|++++|.+.++
T Consensus 83 ~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 83 IAVKEYASALETLD 96 (126)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCHHHHHHHHH
Confidence 99999999998875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=9.7e-06 Score=61.11 Aligned_cols=63 Identities=16% Similarity=0.111 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCC--CCCC----HHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMD----KFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
..|..+..+|...|++++|++.+++..+.. ..++ ..+|..+..++...|++++|.+.+++..+
T Consensus 43 ~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 43 TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444555555555444443321 0111 12344444555555555555555555444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00068 Score=60.09 Aligned_cols=83 Identities=5% Similarity=-0.099 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC-ChhhHHHHHHhcCC---CChHHHHHHHHHHHhc-C-ChhHHH
Q 010961 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG-DFNSANQVLNMMKE---PDDFCLSALISGYANC-G-KMNDAR 258 (496)
Q Consensus 185 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-~-~~~~a~ 258 (496)
.+..++|.++.+.++...+. +..+++.--..+...| .+++++.+++.+.. .+..+|+.-...+... + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 33445666666666665544 4445555555555555 36666666666553 2333444444444333 4 555566
Q ss_pred HHHHhcCCCC
Q 010961 259 RVFDRTTDTS 268 (496)
Q Consensus 259 ~~~~~~~~~~ 268 (496)
++++++.+.+
T Consensus 146 ~~~~k~L~~d 155 (349)
T 3q7a_A 146 EYIHGSLLPD 155 (349)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHHHHhC
Confidence 6666555533
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.7e-06 Score=75.97 Aligned_cols=98 Identities=9% Similarity=-0.089 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchh-ccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcC---CCc-c--h
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLV-ERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNG---LDF-D--S 207 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~-~--~ 207 (496)
++..+...+...|++++|..++++...... .+.+| ...++..+++.|...|++++|..+++...... ..| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 444555555555555555555555433110 01111 23445555555556666666665555544321 111 1 2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 208 VLGSSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
..+..+...+...|++++|...|.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23444555555566666665555444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-05 Score=58.22 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 33344444444555555544444432 245566666777777777777777777776652 33566677777777777
Q ss_pred CchhhHHHHHHHHHHcC
Q 010961 450 SSLELGEQVFARVTIIG 466 (496)
Q Consensus 450 g~~~~a~~~~~~~~~~~ 466 (496)
|++++|...++...+.+
T Consensus 86 ~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 77777777777776543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=8.9e-06 Score=62.19 Aligned_cols=112 Identities=12% Similarity=-0.024 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010961 371 ILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447 (496)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 447 (496)
..+..+...+...|++++|...|++..+ .+...|..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 3444444455555555555555554432 345667777777888888888888888877753 345667777888888
Q ss_pred ccCchhhHHHHHHHHHHcC----CCchHHHHHHHHHHHHh
Q 010961 448 NISSLELGEQVFARVTIIG----LDSDQIISTSLVDFYCK 483 (496)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 483 (496)
..|++++|...++...+.. ...+..+...+..+..+
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888776532 11234444444444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=3.5e-05 Score=56.77 Aligned_cols=101 Identities=13% Similarity=-0.021 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQN 414 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 414 (496)
.+..+...+...|++++|...|++.. +.++..+..+...+...|++++|...+++..+ .+...+..+...+...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34444445555555555555555544 22344455555555555666666555555442 2456777788888888
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 010961 415 GSPIEALDLFCNMNKLDLRMDKFSLASV 442 (496)
Q Consensus 415 g~~~~a~~~~~~m~~~~~~p~~~~~~~l 442 (496)
|++++|.+.+++..+.. +.+...+..+
T Consensus 86 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 88888888888887753 2334444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=7.5e-06 Score=61.74 Aligned_cols=93 Identities=9% Similarity=-0.012 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCC--ch----HHHHH
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD--SD----QIIST 475 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 475 (496)
..+..++..+.+.|++++|++.|++..+.. |.+...|..+..+|...|++++|...+++.++.... ++ ..++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 467788999999999999999999998863 446788999999999999999999999988764311 11 24778
Q ss_pred HHHHHHHhcCChHHHHHhhh
Q 010961 476 SLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~ 495 (496)
.+..++...|++++|.+.++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 88999999999999998875
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.16 E-value=2.3e-05 Score=59.83 Aligned_cols=95 Identities=8% Similarity=-0.154 Sum_probs=84.0
Q ss_pred CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
.+...|..+...+...|++++|...|++..... +.+...|..+..++...|++++|...++...+.... +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 466788899999999999999999999998863 456788999999999999999999999999886533 678899999
Q ss_pred HHHHhcCChHHHHHhhh
Q 010961 479 DFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 479 ~~~~~~g~~~~A~~~~~ 495 (496)
.+|...|++++|.+.++
T Consensus 85 ~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQ 101 (137)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 99999999999998875
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.8e-05 Score=59.39 Aligned_cols=109 Identities=11% Similarity=0.019 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 370 TILLNTMITVYSSCGRIEDAKHIFRTMPN--KS----LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
...+..+...+...|++++|...|++..+ |+ ...|..+...|...|++++|...+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 106 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence 33455555556666666666666665543 44 4667778888888888888888888887752 33567788888
Q ss_pred HHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (496)
.++...|++++|...+++..+.... +...+..+...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 8888888999998888888775422 34444444443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=98.15 E-value=5.2e-07 Score=81.04 Aligned_cols=237 Identities=16% Similarity=0.176 Sum_probs=167.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChh
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKAGELK 120 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 120 (496)
+|..|.++..+.+...+|+..| ++..|+..|..++.+..+.|.+++-...+...++ .++..=+.|+-+|++.+++.
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~ 133 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 133 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSS
T ss_pred HHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHH
Confidence 7888999999999888888766 3446778889999999999999999999888776 55566678899999999877
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchh-----------------ccCCcCHHHHHHHHHHHH
Q 010961 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV-----------------ERLQCDAFILATVIGACA 183 (496)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------------~~~~p~~~~~~~ll~~~~ 183 (496)
+.++++. .||..-...+.+-|...|.++.|.-+|..+..-.. ..-.-+..||..+-.+|.
T Consensus 134 elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv 210 (624)
T 3lvg_A 134 ELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 210 (624)
T ss_dssp TTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH
T ss_pred HHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Confidence 6554432 35666666677777777777766666655422100 112345678888889999
Q ss_pred ccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC---CCChHHHHHHHHHHHhcCChhHHHHH
Q 010961 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK---EPDDFCLSALISGYANCGKMNDARRV 260 (496)
Q Consensus 184 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (496)
..+.+..|...--.++-. ......++..|-..|-+++.+.+++.-. +.....|+-|.-.|++- ++++..+.
T Consensus 211 d~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 211 DGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp HSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHH
T ss_pred CchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHH
Confidence 998888776665544432 2223467778888999999998888755 35667788887777765 55666666
Q ss_pred HHhcCC----C-------CcchHHHHHHHHHhCCCHHHHHH
Q 010961 261 FDRTTD----T-------SSVMWNSMISGYISNNEDTEALL 290 (496)
Q Consensus 261 ~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~ 290 (496)
++.... | ....|.-++-.|..-.++|.|..
T Consensus 285 lklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 285 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 654332 2 34578888888888888887653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=5.4e-06 Score=62.64 Aligned_cols=107 Identities=6% Similarity=-0.061 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCC--CCC----HHHHHHHHH
Q 010961 374 NTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL--RMD----KFSLASVIS 444 (496)
Q Consensus 374 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~l~~ 444 (496)
..+...+...|+++.|...|++..+ .+...+..+...|...|++++|...+++..+... .++ ..++..+..
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 3344444444444444444444332 2445666667777777777777777777665421 112 556777777
Q ss_pred HHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482 (496)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (496)
++...|++++|...++...+.. |+......+..+..
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 7777888888888887777654 34555555544443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.13 E-value=3.8e-05 Score=59.16 Aligned_cols=94 Identities=14% Similarity=0.041 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (496)
.+..+...+...|++++|+..|+...... +.+...+..+..++...|++++|...++.+.+.. +.++..+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34445556666677777777777666542 3355556666666666777777777777666654 334455566666677
Q ss_pred hcCChhhHHHHHHhcc
Q 010961 351 KRGMPSDACKLFSELK 366 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~~ 366 (496)
..|++++|...|+...
T Consensus 98 ~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 98 QLGDLDGAESGFYSAR 113 (142)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 7777777777766654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.7e-05 Score=59.87 Aligned_cols=99 Identities=11% Similarity=0.072 Sum_probs=54.1
Q ss_pred HHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC------CC----hhhHHHHHHHH
Q 010961 345 LLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN------KS----LISWNSMIVGL 411 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~----~~~~~~l~~~~ 411 (496)
+...+...|++++|...|++.. +.+...+..+...+...|++++|...+++..+ ++ ..++..+...|
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 89 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Confidence 3333444444444444444333 22233334444444444444444444444332 11 45677788888
Q ss_pred HhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 412 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
...|++++|.+.+++..+. .|+......+...
T Consensus 90 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 90 FKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 8999999999999988875 4566555554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.9e-05 Score=57.62 Aligned_cols=95 Identities=17% Similarity=0.004 Sum_probs=81.6
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCC-chHHHHHHHH
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD-SDQIISTSLV 478 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 478 (496)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.... .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 45677788899999999999999999998863 456788999999999999999999999999886422 1478889999
Q ss_pred HHHHhc-CChHHHHHhhh
Q 010961 479 DFYCKC-GFIKMDEYYLM 495 (496)
Q Consensus 479 ~~~~~~-g~~~~A~~~~~ 495 (496)
.++.+. |++++|.+.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp HHHTTCSSCSHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 999999 99999999875
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.8e-05 Score=62.74 Aligned_cols=115 Identities=9% Similarity=-0.021 Sum_probs=91.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
+...+..+...+...|++++|+..|++..+ | +...|..+..+|...|++++|+..+++..+.. +.+...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455788888999999999999999998874 3 67789999999999999999999999998863 4467889999999
Q ss_pred HhccCchhhHHHHHHHHHHcCC-CchHHHHHHHHHHHHhc
Q 010961 446 CANISSLELGEQVFARVTIIGL-DSDQIISTSLVDFYCKC 484 (496)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 484 (496)
+...|++++|...+++..+... .++......+..+..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 128 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999998877542 22333444444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.9e-05 Score=62.64 Aligned_cols=95 Identities=15% Similarity=0.069 Sum_probs=84.2
Q ss_pred CchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 010961 336 IDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIV 409 (496)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~ 409 (496)
..+...+..+...+...|++++|+..|++.. +.+...|..+..+|...|++++|+..|++..+ .+...|..+..
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456778889999999999999999999887 45777899999999999999999999998874 35678999999
Q ss_pred HHHhCCChhhHHHHHHHHHhC
Q 010961 410 GLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 410 ~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999875
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.7e-05 Score=59.15 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
+..+...+.+.|++++|...|++..+ | +...|..+..++...|++++|+..+++..+.. +-+...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 44555667777777777777777654 3 45666777777777777777777777777652 33556677777777777
Q ss_pred CchhhHHHHHHHHHH
Q 010961 450 SSLELGEQVFARVTI 464 (496)
Q Consensus 450 g~~~~a~~~~~~~~~ 464 (496)
|++++|...++...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777776654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.04 E-value=5.3e-06 Score=78.14 Aligned_cols=145 Identities=10% Similarity=0.028 Sum_probs=96.2
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCc---------------hhhHHHHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYD---------------TILLNTMI 377 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~---------------~~~~~~l~ 377 (496)
..+++++|...|....+.. +.....+..+...+.+.|++++|+..|++.. +.+ ...|..+.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 3455666666665443321 1234567777888888888888888888776 223 35677777
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhh
Q 010961 378 TVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454 (496)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 454 (496)
.+|.+.|++++|+..++++.+ .+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.|+.++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 778888888888887777654 355677777778888888888888888877752 2345567777777777777766
Q ss_pred HHH-HHHHH
Q 010961 455 GEQ-VFARV 462 (496)
Q Consensus 455 a~~-~~~~~ 462 (496)
+.+ .++.|
T Consensus 404 a~~~~~~~~ 412 (457)
T 1kt0_A 404 RDRRIYANM 412 (457)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 553 34444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.03 E-value=7.4e-06 Score=77.12 Aligned_cols=84 Identities=8% Similarity=-0.098 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC-HHHHHHHH
Q 010961 104 FSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD-AFILATVI 179 (496)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~ll 179 (496)
..|..+..++.+.|++++|+..+++..+ .+..+|..+..+|...|++++|+..|++..+ +.|+ ...+..+.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~-----l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE-----VNPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TC----CHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHHHHHH
Confidence 3444555555555555555555555442 2344555555666666666666666666555 3332 23445555
Q ss_pred HHHHccchHHHHH
Q 010961 180 GACADLAALEYGK 192 (496)
Q Consensus 180 ~~~~~~~~~~~a~ 192 (496)
.++...++.+.+.
T Consensus 393 ~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 393 MCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-05 Score=62.62 Aligned_cols=132 Identities=14% Similarity=-0.003 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCCh
Q 010961 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSP 417 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 417 (496)
.++..+...+...|++++|...+++.... ......+ -..++..+...+...|++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 65 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLI------------------------AKEFGDKAAERIAYSNLGNAYIFLGEF 65 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------------HHHhCCchHHHHHHHHHHHHHHHcCCH
Confidence 45666667777777777777777654410 0000000 012344455555555555
Q ss_pred hhHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCchhhHHHHHHHHHHc----CCCc-hHHHHHHHHHHHHhcCCh
Q 010961 418 IEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLELGEQVFARVTII----GLDS-DQIISTSLVDFYCKCGFI 487 (496)
Q Consensus 418 ~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 487 (496)
++|.+.+++..+. +-++ ....+..+...+...|++++|...+++..+. +..+ ....+..+...+...|++
T Consensus 66 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 145 (164)
T 3ro3_A 66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 145 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCH
Confidence 5555555554331 1001 1234445555555566666666655544321 1111 124455556666666666
Q ss_pred HHHHHhhh
Q 010961 488 KMDEYYLM 495 (496)
Q Consensus 488 ~~A~~~~~ 495 (496)
++|.+.++
T Consensus 146 ~~A~~~~~ 153 (164)
T 3ro3_A 146 DQAMHFAE 153 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=5.7e-05 Score=56.23 Aligned_cols=92 Identities=11% Similarity=-0.109 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
+..+...+.+.|++++|+..|++..+ ..| +...+..+..++...|+++.|...+++.++..+. +...+..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~-----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ-----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 33444455555555555555555544 222 3344444444555555555555555555544332 3334445555
Q ss_pred HHHhcCChhhHHHHHHhcC
Q 010961 216 LYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~ 234 (496)
++...|++++|...+++..
T Consensus 94 ~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00014 Score=56.11 Aligned_cols=93 Identities=12% Similarity=0.006 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC----HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD----AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 211 (496)
.+..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|...++...+.... +...+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG-----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH-----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 444445555555555555555555544 3333 334444444455555555555555554443222 334444
Q ss_pred HHHHHHHhcCChhhHHHHHHhcC
Q 010961 212 SLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
.+..++...|++++|...|++..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0004 Score=61.22 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=32.9
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhcC--ChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCC-HHHHHHHHHH
Q 010961 89 EKSLQLFNVMPQ---KNDFSWNMLISGFAKAG--ELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGF-AREAVRLFKE 159 (496)
Q Consensus 89 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~ 159 (496)
++++.+++.+.. .+..+|+.-...+.+.| .+++++.+++.+.+ .|..+|+.-.-++...|. ++++++.+.+
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 444444444433 23334444444444444 24455555555443 233344444444444444 3555555555
Q ss_pred HHH
Q 010961 160 LNS 162 (496)
Q Consensus 160 ~~~ 162 (496)
+..
T Consensus 171 ~I~ 173 (331)
T 3dss_A 171 LIT 173 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.7e-05 Score=59.81 Aligned_cols=138 Identities=15% Similarity=0.029 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC--HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCC----c-chh
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD--AFILATVIGACADLAALEYGKQIHSHILVNGLD----F-DSV 208 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~ 208 (496)
++..+...+...|++++|++.+++..........+. ..++..+...+...|+++.|...+++..+.... + ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455666667777777777777766655211000010 124555555566666666666666655442111 0 123
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCC--CcchHHHHHHHHHhCCCHH
Q 010961 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT--SSVMWNSMISGYISNNEDT 286 (496)
Q Consensus 209 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 286 (496)
.+..+...+...|++++|...+++..+ +......+ ....+..+...+...|+++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 146 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLA------------------------IAQELKDRIGEGRACWSLGNAYTALGNHD 146 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH------------------------HHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence 444555555556666666555544331 00000000 0234555666677777777
Q ss_pred HHHHHHHHHHH
Q 010961 287 EALLLFHKMRR 297 (496)
Q Consensus 287 ~a~~~~~~m~~ 297 (496)
+|...+++..+
T Consensus 147 ~A~~~~~~a~~ 157 (164)
T 3ro3_A 147 QAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.9e-05 Score=74.71 Aligned_cols=115 Identities=10% Similarity=-0.025 Sum_probs=70.6
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhH
Q 010961 379 VYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455 (496)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 455 (496)
.+.+.|++++|.+.+++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555666555555443 245667777777777777777777777777752 33566777777777777777777
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHH--HHhcCChHHHHHhhh
Q 010961 456 EQVFARVTIIGLDSDQIISTSLVDF--YCKCGFIKMDEYYLM 495 (496)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 495 (496)
...+++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777665322 33344445444 666777777776654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.9e-05 Score=56.67 Aligned_cols=93 Identities=9% Similarity=-0.040 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCch------HHHH
Q 010961 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD------QIIS 474 (496)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~ 474 (496)
...+..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|...++...+.... + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 4566777788888888888888888887753 446777888888888888888888888888764322 2 5566
Q ss_pred HHHHHHHHhcCChHHHHHhhh
Q 010961 475 TSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~ 495 (496)
..+..++...|+.++|.+.++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 677777777787777766544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00011 Score=55.23 Aligned_cols=93 Identities=10% Similarity=-0.074 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC---HHHHHHHH
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN--KSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD---KFSLASVI 443 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~ 443 (496)
+..+...+...|++++|...|+.+.+ |+. ..+..+..++...|++++|...+++..+.. +.+ ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 44567788899999999999998764 433 477888999999999999999999998863 223 56788888
Q ss_pred HHHhccCchhhHHHHHHHHHHcC
Q 010961 444 SACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
.++...|++++|...++.+.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999998864
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.90 E-value=7.2e-05 Score=68.03 Aligned_cols=92 Identities=13% Similarity=0.010 Sum_probs=75.0
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 479 (496)
+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|...+++..+... .+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 44678888899999999999999999998863 44677888899999999999999999998887653 25677888888
Q ss_pred HHHhcCChHHHHHh
Q 010961 480 FYCKCGFIKMDEYY 493 (496)
Q Consensus 480 ~~~~~g~~~~A~~~ 493 (496)
++.+.|+.+++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00015 Score=68.42 Aligned_cols=114 Identities=11% Similarity=0.020 Sum_probs=54.4
Q ss_pred HHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHH
Q 010961 248 YANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324 (496)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 324 (496)
+.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4455556666666655443 224455555555556666666666665555542 233445555555555555555555
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHH--HHhcCChhhHHHHHH
Q 010961 325 QVHGHACKVGVIDDVIVASALLDT--YSKRGMPSDACKLFS 363 (496)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 363 (496)
+.++++.+... .+...+..+..+ +...|++++|++.++
T Consensus 95 ~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555421 122222233222 444455555555554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0002 Score=53.78 Aligned_cols=90 Identities=13% Similarity=-0.024 Sum_probs=40.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHchhccCCcCH----HHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcc--hhHHHHH
Q 010961 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDA----FILATVIGACADLAALEYGKQIHSHILVNGLDFD--SVLGSSL 213 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 213 (496)
+...+...|++++|.+.|++..+. .|+. ..+..+..++...|+++.|...++...+..+... ...+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 344444555555555555554441 1111 2334444444455555555555555544332210 2334444
Q ss_pred HHHHHhcCChhhHHHHHHhcC
Q 010961 214 VNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 214 ~~~~~~~~~~~~a~~~~~~~~ 234 (496)
..++...|++++|...|+.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.83 E-value=2e-05 Score=58.37 Aligned_cols=99 Identities=12% Similarity=0.010 Sum_probs=73.7
Q ss_pred hcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhH
Q 010961 382 SCGRIEDAKHIFRTMPNK------SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 455 (496)
..|++++|+..|++..+. +...+..+...|...|++++|+..+++..+.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 468889999999987653 23578889999999999999999999998863 44678899999999999999999
Q ss_pred HHHHHHHHHcCC-CchHHHHHHHHHHH
Q 010961 456 EQVFARVTIIGL-DSDQIISTSLVDFY 481 (496)
Q Consensus 456 ~~~~~~~~~~~~-~~~~~~~~~l~~~~ 481 (496)
...+++..+... .|+...+...+..|
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999998877532 33344444444444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.80 E-value=6.2e-05 Score=59.44 Aligned_cols=117 Identities=10% Similarity=-0.022 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChh
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 418 (496)
...+......+.+.|++++|+..|.+....- .......+..... +..+...+...|..+..+|.+.|+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~nla~~~~~~~~~~ 80 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRL--------DTLILREKPGEPE--WVELDRKNIPLYANMSQCYLNIGDLH 80 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHHHHTSCTTSHH--HHHHHHTHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------HHhcccCCCCHHH--HHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 4456667777778888888888777543110 0000000000000 00001123356777888888888888
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 419 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
+|+..+++..+.. +.+...|..+..++...|++++|...++...+..
T Consensus 81 ~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 81 EAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 8888888888763 4467788888888888899999998888887754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0072 Score=53.25 Aligned_cols=227 Identities=9% Similarity=0.011 Sum_probs=141.3
Q ss_pred HHhcCChh-HHHHHHHhcCCCCcc---hHHHHHHHHHhCCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010961 248 YANCGKMN-DARRVFDRTTDTSSV---MWNSMISGYISNNE----------DTEALLLFHKMRRNGVLEDASTLASVLSA 313 (496)
Q Consensus 248 ~~~~~~~~-~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 313 (496)
..+.|.++ +|+++++.+...++. +|+.--..+...+. +++++.+++.+.... +-+..+++.-...
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34556654 789999888775543 44443333333332 577888888887753 4466667666666
Q ss_pred Hhccc--chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC-hhhHHHHHHhcc---cCchhhHHHHHHHHHhc----
Q 010961 314 CSSLG--FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM-PSDACKLFSELK---VYDTILLNTMITVYSSC---- 383 (496)
Q Consensus 314 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~---- 383 (496)
+.+.+ .++++..+++.+.+.. +-+...++.-.-++...|. ++++++.++.+. +.|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 66666 4788888888888875 4566677776667777777 478888888777 45666676665555544
Q ss_pred ----------CCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhC-----------CChhhHHHHHHHHHhCCCCCCH-HH
Q 010961 384 ----------GRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQN-----------GSPIEALDLFCNMNKLDLRMDK-FS 438 (496)
Q Consensus 384 ----------~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~-~~ 438 (496)
+.++++++.+..... | |..+|+-+-..+.+. +..+++++.++++.+. .||. ..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~~w~ 274 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPENKWC 274 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--CcccchH
Confidence 346777777777653 3 556666555555444 3466788888888775 4543 23
Q ss_pred HHHHHH---HHhccCchhhHHHHHHHHHHcCCCch-HHHHHHHHHH
Q 010961 439 LASVIS---ACANISSLELGEQVFARVTIIGLDSD-QIISTSLVDF 480 (496)
Q Consensus 439 ~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 480 (496)
+.+++. +....|..+++...+.++++.. |- ..-|..+...
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D--p~r~~~y~d~~~~ 318 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC--GGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhC--cchhhHHHHHHHH
Confidence 222221 2224566677777888777643 33 3444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0003 Score=66.13 Aligned_cols=127 Identities=10% Similarity=-0.132 Sum_probs=71.6
Q ss_pred HHhCCCHHHHHHHHHHHHHC---CC---CC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc-----C--CCchHHHHHH
Q 010961 279 YISNNEDTEALLLFHKMRRN---GV---LE-DASTLASVLSACSSLGFLEHGKQVHGHACKV-----G--VIDDVIVASA 344 (496)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~---g~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 344 (496)
+...|++++|..++++..+. -+ .| ...+++.+...|...|++++|..++.+.++. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777776665432 01 11 2345566666666666666666666655431 2 1122344556
Q ss_pred HHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----hhHHHHHHHHHhCCChhhH
Q 010961 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEA 420 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a 420 (496)
|...|...|++++|+.++++ |+++++....|+. .+.+.+..++...|.+++|
T Consensus 399 La~~~~~~G~~~eA~~~~~~------------------------Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICK------------------------AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH------------------------HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665553 3334444443332 2345566667777778888
Q ss_pred HHHHHHHHh
Q 010961 421 LDLFCNMNK 429 (496)
Q Consensus 421 ~~~~~~m~~ 429 (496)
..++.++++
T Consensus 455 e~~~~~~~~ 463 (490)
T 3n71_A 455 EFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.75 E-value=6.7e-05 Score=55.44 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=22.7
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364 (496)
Q Consensus 308 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 364 (496)
..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|+..+++
T Consensus 31 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 31 LGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333333444444444444444444332 12233333444444444444444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=57.30 Aligned_cols=93 Identities=14% Similarity=-0.033 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhC-------CC----------CCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKL-------DL----------RMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
..+......+.+.|++++|+..|.+.... +- +.+...|..+..+|.+.|++++|...++..++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 35666777788888888888888877653 10 12346788899999999999999999999988
Q ss_pred cCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 465 IGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 465 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
... .+...+..+..+|...|++++|.+.++
T Consensus 92 ~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~ 121 (162)
T 3rkv_A 92 REE-TNEKALFRRAKARIAAWKLDEAEEDLK 121 (162)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCC-cchHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 753 367889999999999999999998875
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.71 E-value=1.9e-05 Score=71.30 Aligned_cols=408 Identities=11% Similarity=0.055 Sum_probs=213.6
Q ss_pred HHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CChhhHHHHHHHHHhc
Q 010961 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKL 85 (496)
Q Consensus 8 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~ 85 (496)
...|.++....+...+|..-| ++.+ .|+ .|..++....+.|.+++-+..+...++ +++..=+.|+-+|++.
T Consensus 57 Ws~LgkAqL~~~~v~eAIdsy---IkA~-Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVKEAIDSY---IKAD-DPS---SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 129 (624)
T ss_dssp SSSHHHHTTTSSSCTTTTTSS---CCCS-CCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS
T ss_pred HHHHHHHHHccCchHHHHHHH---HhCC-ChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh
Confidence 444556666666666665433 2222 122 345666667777777777776666554 4555556677777777
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCC------------------------CCcccHHHHH
Q 010961 86 GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR------------------------RNAIAWNSMI 141 (496)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~~li 141 (496)
++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+.. .++.+|-.+-
T Consensus 130 ~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~ 206 (624)
T 3lvg_A 130 NRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 206 (624)
T ss_dssp CSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred CcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 66544322222 25555555666666666666666666655531 3678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC
Q 010961 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221 (496)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (496)
.+|+..+.+.-|.-.--.+.- .| .....++..|...|.+++...+++.-... -......++.|.-.|++-
T Consensus 207 ~ACvd~~EfrLAqicGLniIv------ha--deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 207 FACVDGKEFRLAQMCGLHIVV------HA--DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp HHHHHSCTTTTTTHHHHHHHC------CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-
T ss_pred HHHhCchHHHHHHHhcchhcc------cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-
Confidence 999999988776554333322 11 12334666777888888888888876632 233566788888888875
Q ss_pred ChhhHHHHHHhcCC-----------CChHHHHHHHHHHHhcCChhHHHHHHHh-------------cC--CCCcchHHHH
Q 010961 222 DFNSANQVLNMMKE-----------PDDFCLSALISGYANCGKMNDARRVFDR-------------TT--DTSSVMWNSM 275 (496)
Q Consensus 222 ~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------------~~--~~~~~~~~~l 275 (496)
++++..+.++..-. .....|..++-.|..-..++.|....-. +. -.|...|--.
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKA 356 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRA 356 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHH
Confidence 45666655554432 2345688888888888888876543211 00 0344444444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355 (496)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (496)
|+-|.... +..--.++.-+.. .+.++ .+++.+.+.|++..+..++..... ..+..+-.++-+.|....++
T Consensus 357 i~FYL~e~-P~lL~DLL~vL~p-rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~---~N~~aVNeAln~L~IEEEDy 426 (624)
T 3lvg_A 357 IQFYLEFK-PLLLNDLLMVLSP-RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFITEEDY 426 (624)
T ss_dssp HHHHTTSC-CTTSHHHHHHHCT-TCCST-----TTHHHHHTTTCGGGGTGGGTSCCC---SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhC-hHHHHHHHHhccc-cCChH-----HHHHHHHhcCCchhhHHHHHHHHH---hhHHHHHHHHHHHHhhhhhH
Confidence 44443321 1111111111111 01111 112222333333333333222221 22344445566667777776
Q ss_pred hhHHHHHHhc------------ccCchhhHHH-HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHH
Q 010961 356 SDACKLFSEL------------KVYDTILLNT-MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 356 ~~a~~~~~~~------------~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 422 (496)
+.-+.-.+.. .+....-+.. -...|.+.++++++..+.++=. .|.-.|...+..|+.+-|.+
T Consensus 427 ~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDk-----lykDAietAa~S~~~elaee 501 (624)
T 3lvg_A 427 QALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS-----LYKDAMQYASESKDTELAEE 501 (624)
T ss_dssp HHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHH
Confidence 6544433322 2222222332 2345566777887766544322 12222333445566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCchh
Q 010961 423 LFCNMNKLDLRMDKFSLASVISACANISSLE 453 (496)
Q Consensus 423 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 453 (496)
+++-..+.| +...|...+-.|...=+++
T Consensus 502 LL~yFv~~g---~~EcF~a~LytCYdLlrpD 529 (624)
T 3lvg_A 502 LLQWFLQEE---KRECFGACLFTCYDLLRPD 529 (624)
T ss_dssp HHHHHHHHC---STHHHHHHHHHTSSSSSCH
T ss_pred HHHHHHHcC---chHHHHHHHHHHhhccChH
Confidence 666665544 3334444444444443333
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00028 Score=64.12 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=67.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
+...|..+..+|.+.|++++|+..+++..+ | +...|..+..+|...|++++|++.|++..+.. +.+...+..+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445677778888888888888888887765 3 56788889999999999999999999998862 3356677777777
Q ss_pred HhccCchhhHHH
Q 010961 446 CANISSLELGEQ 457 (496)
Q Consensus 446 ~~~~g~~~~a~~ 457 (496)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776666543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00042 Score=65.16 Aligned_cols=127 Identities=8% Similarity=-0.032 Sum_probs=80.5
Q ss_pred HhcccchhhHHHHHHHHHHc-----C--CCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCH
Q 010961 314 CSSLGFLEHGKQVHGHACKV-----G--VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386 (496)
Q Consensus 314 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (496)
+...|++++|+.++.+.++. | .+....+++.|..+|...|++++|..++++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~---------------------- 376 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR---------------------- 376 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------------------
Confidence 34566666666666655442 1 111234555666666666666666665553
Q ss_pred HHHHHHHhhCCCCC----hhhHHHHHHHHHhCCChhhHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHhccCchhhH
Q 010961 387 EDAKHIFRTMPNKS----LISWNSMIVGLSQNGSPIEALDLFCNMNK-----LDL-RMD-KFSLASVISACANISSLELG 455 (496)
Q Consensus 387 ~~a~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~a 455 (496)
|++++++...++ ..+++.|...|...|++++|..++++..+ .|- .|+ ..+...+-.++...|.+++|
T Consensus 377 --aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 377 --MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp --HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333332 24688899999999999999999888754 231 232 33566677778888999999
Q ss_pred HHHHHHHHH
Q 010961 456 EQVFARVTI 464 (496)
Q Consensus 456 ~~~~~~~~~ 464 (496)
+.++..+.+
T Consensus 455 e~~~~~~~~ 463 (490)
T 3n71_A 455 EFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0002 Score=64.29 Aligned_cols=142 Identities=8% Similarity=-0.048 Sum_probs=74.2
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (496)
..+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ ...++..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 34556667777788888888888876653 343321 22333333333222 113567777888
Q ss_pred HhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHH-HHhCCChhhHHH
Q 010961 350 SKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVG-LSQNGSPIEALD 422 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~-~~~~g~~~~a~~ 422 (496)
.+.|++++|+..+++.. +.+...+..+..+|...|++++|...|++..+ | +...+..+... ....+..+.+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776 44566788888888888888888888888875 3 33445555544 234566777888
Q ss_pred HHHHHHhC
Q 010961 423 LFCNMNKL 430 (496)
Q Consensus 423 ~~~~m~~~ 430 (496)
.|++|...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 88888764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00034 Score=62.78 Aligned_cols=144 Identities=12% Similarity=-0.058 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCC
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (496)
.+..+...+.+.|++++|...|....+.. |+... +...++..++...+. ...|..+..+|.+.|+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK------NPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH------THHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH------HHHHHHHHHHHHHcCC
Confidence 35566677888899999999999887753 33221 222333344433332 2478889999999999
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC-CHHHHHHHHHH-HhccCchhhHHHHHH
Q 010961 386 IEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVISA-CANISSLELGEQVFA 460 (496)
Q Consensus 386 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~-~~~~g~~~~a~~~~~ 460 (496)
+++|+..+++..+ .+...|..+..+|...|++++|...|++..+. .| +...+..+... ....+..+.+...++
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998864 36678999999999999999999999998875 45 44455555554 334567788888999
Q ss_pred HHHHcC
Q 010961 461 RVTIIG 466 (496)
Q Consensus 461 ~~~~~~ 466 (496)
.|....
T Consensus 324 ~~l~~~ 329 (338)
T 2if4_A 324 GIFKGK 329 (338)
T ss_dssp ------
T ss_pred HhhCCC
Confidence 886643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00042 Score=53.36 Aligned_cols=90 Identities=13% Similarity=-0.090 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHhccCchhhHHHHHHHHHHc-----
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-------------KFSLASVISACANISSLELGEQVFARVTII----- 465 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 465 (496)
+......+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|...+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 444555666677777777777776653 232 227777777888888888888888877764
Q ss_pred CCCc-hHHHH----HHHHHHHHhcCChHHHHHhhh
Q 010961 466 GLDS-DQIIS----TSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 466 ~~~~-~~~~~----~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.+.| +...| .....++...|++++|.+.++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~ 126 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHH
Confidence 1133 45666 778888888888888887765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.001 Score=51.18 Aligned_cols=93 Identities=17% Similarity=0.015 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC-------------HHHHHHHHHHHHccchHHHHHHHHHHHHHc-
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD-------------AFILATVIGACADLAALEYGKQIHSHILVN- 201 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 201 (496)
.+......+.+.|++++|++.|++..+ +.|+ ...|..+..++...|++++|...++..++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~-----l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME-----ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh-----hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 345566667778888888888888777 3333 125555666666666666666666666654
Q ss_pred ------CCCcchhHH----HHHHHHHHhcCChhhHHHHHHhcC
Q 010961 202 ------GLDFDSVLG----SSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 202 ------~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
.+. +...| .....++...|++++|+..|++..
T Consensus 88 n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 88 NRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 221 33344 555555556666666666555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0028 Score=61.08 Aligned_cols=116 Identities=9% Similarity=-0.040 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcC--CHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC-ChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 372 LLNTMITVYSSCG--RIEDAKHIFRTMPN---KSLISWNSMIVGLSQNG-SPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 372 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
+|..-...+.+.+ +++++++.++++.+ .|..+|+.-...+.+.| .++++++.++++.+.. +-|...|+.....
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~l 187 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHH
Confidence 3333333444444 33444444444432 23444444444444444 4555555555554432 2234444443333
Q ss_pred Hhc--------------cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHH
Q 010961 446 CAN--------------ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489 (496)
Q Consensus 446 ~~~--------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 489 (496)
+.+ .+.++++.+.+...+..... +...|..+...+.+.|+.++
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 332 24567777777777765432 56677777777777666443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00079 Score=46.58 Aligned_cols=83 Identities=12% Similarity=0.112 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480 (496)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (496)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3567777888888899999999998887753 44667788888888889999999999998877643 245667777777
Q ss_pred HHhcC
Q 010961 481 YCKCG 485 (496)
Q Consensus 481 ~~~~g 485 (496)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 66544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00019 Score=52.11 Aligned_cols=94 Identities=16% Similarity=0.085 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCc-c----hhHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF-D----SVLG 210 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~ 210 (496)
.|..+...+.+.|++++|++.|++..+. .+.+...+..+..++...|++++|...++..++..... + ...+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4455555666666666666666666552 22234455555555556666666666666655443221 0 2334
Q ss_pred HHHHHHHHhcCChhhHHHHHHhc
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
..+..++...|+.+.|...++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 44445555555555554444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00077 Score=49.33 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=72.5
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 388 DAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 388 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
.|...|++..+ .+...+..+...|...|++++|+..+++..+.. +.+...|..+..++...|++++|...++...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666543 356788899999999999999999999998863 44677899999999999999999999998876
Q ss_pred cCC-CchHHHHHHHHHHHHhcC
Q 010961 465 IGL-DSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 465 ~~~-~~~~~~~~~l~~~~~~~g 485 (496)
... .++......+...+.+.|
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhc
Confidence 432 123444555555554444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0015 Score=49.67 Aligned_cols=50 Identities=10% Similarity=0.085 Sum_probs=24.2
Q ss_pred CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCchhhHHHHHHHHHHcC
Q 010961 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSLELGEQVFARVTIIG 466 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 466 (496)
.+++++|.++|++..+.| ++..+..|...|.. .+++++|..++++..+.|
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 344555555555554443 23334444444444 455555555555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00034 Score=51.29 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=59.0
Q ss_pred chhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 010961 22 HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98 (496)
Q Consensus 22 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 98 (496)
+.|...++..++.. |.....+..+...|...|++++|+..|++..+ .+...|..+..++...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667777777765 44455788888888899999999988887764 34567888888888888888888888876
Q ss_pred CC
Q 010961 99 PQ 100 (496)
Q Consensus 99 ~~ 100 (496)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.012 Score=56.70 Aligned_cols=167 Identities=11% Similarity=-0.039 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc----------hhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC-
Q 010961 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF----------LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG- 353 (496)
Q Consensus 285 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 353 (496)
.++|++.++++.... +-+...|+.--..+...|+ ++++...++.+.+.. +-+..+|+.-.-++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 346677777776642 2233344444444444444 777777777777765 345566766666677777
Q ss_pred -ChhhHHHHHHhcc---cCchhhHHHHHHHHHhcC-CHHHHHHHHhhCCCC---ChhhHHHHHHHHHhC-----------
Q 010961 354 -MPSDACKLFSELK---VYDTILLNTMITVYSSCG-RIEDAKHIFRTMPNK---SLISWNSMIVGLSQN----------- 414 (496)
Q Consensus 354 -~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~----------- 414 (496)
+++++++.++++. +.|...|+.-...+.+.| .++++++.++++.+. |..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 5588888888777 445566777777777777 788888888888763 556777666665552
Q ss_pred ---CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhh
Q 010961 415 ---GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454 (496)
Q Consensus 415 ---g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 454 (496)
+.++++++.+++..... +-|...|..+-..+.+.+..++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45688999998888753 4467778877777777666443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0012 Score=50.16 Aligned_cols=109 Identities=14% Similarity=-0.036 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC-CChHHHHHHHHHHHh----cCChhHHHHH
Q 010961 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGYAN----CGKMNDARRV 260 (496)
Q Consensus 186 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~ 260 (496)
+++++|.+.|++..+.|.. .. . |...|...+.+++|.++|++..+ .+...+..+...|.. .++.++|.++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-TH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 3556666666666666522 22 2 55555555556666666655443 333344444444443 3444444444
Q ss_pred HHhcCC-CCcchHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 010961 261 FDRTTD-TSSVMWNSMISGYIS----NNEDTEALLLFHKMRRNG 299 (496)
Q Consensus 261 ~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g 299 (496)
|++..+ .++.++..+...|.. .+++++|..+|++..+.|
T Consensus 84 ~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 444332 223444444444444 455555555555555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.02 Score=58.22 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=107.3
Q ss_pred HHHHHhcCChHHHHH-HhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 010961 48 LQMYMRCGNPTDALL-LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126 (496)
Q Consensus 48 ~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 126 (496)
.......+++++|.+ ++..+.. ......++..+.+.|.++.|+++.+. + ..-.......|+++.|.++.
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~---~-----~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD---Q-----DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC---H-----HHHHHHHHHHTCHHHHHHHH
T ss_pred HhHHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC---c-----chheehhhhcCCHHHHHHHH
Confidence 344456789999988 6654441 22337777888888999999887742 1 11234456779999999998
Q ss_pred hhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcc
Q 010961 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206 (496)
Q Consensus 127 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 206 (496)
+.+. +...|..+...+.+.|+++.|.+.|..+.. |..+...+...++.+...++.+.....|.
T Consensus 676 ~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--- 738 (814)
T 3mkq_A 676 TDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD------------LESLFLLHSSFNNKEGLVTLAKDAETTGK--- 738 (814)
T ss_dssp TTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred HhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC------------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---
Confidence 7774 557899999999999999999999998865 44555555557777766666655555442
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 010961 207 SVLGSSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
++....+|.+.|++++|.+++.++.
T Consensus 739 ---~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 739 ---FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ---hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2334445556677777766665543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0011 Score=47.18 Aligned_cols=85 Identities=12% Similarity=0.022 Sum_probs=54.5
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC-CCchHHHHHHHH
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLV 478 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~ 478 (496)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...+++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 44566677777777777777777777777653 3355677777777777777777777777665432 123444445555
Q ss_pred HHHHhcC
Q 010961 479 DFYCKCG 485 (496)
Q Consensus 479 ~~~~~~g 485 (496)
..+.+.+
T Consensus 85 ~~l~~~~ 91 (100)
T 3ma5_A 85 DAKLKAE 91 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 5554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.006 Score=41.93 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
.+..+...+...|++++|+..|++..+. .+.+...+..+..++...|++++|...+++..+..+. +...+..+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 4455555566666666666666665552 1223445555555556666666666666665554322 3334444444
Q ss_pred HH
Q 010961 216 LY 217 (496)
Q Consensus 216 ~~ 217 (496)
++
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0014 Score=46.48 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 103 DFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
...+..+...+...|++++|+..|++..+ | +..+|..+..+|...|++++|++.|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555556666666666666655542 2 344566666666666666666666666554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00095 Score=51.29 Aligned_cols=35 Identities=9% Similarity=-0.183 Sum_probs=17.8
Q ss_pred cCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCH
Q 010961 352 RGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRI 386 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 386 (496)
.+.+++|.+.++... +.+...|..+..++...+++
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~ 52 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQF 52 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhccc
Confidence 344555666665554 33444555555555554443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.053 Score=39.60 Aligned_cols=135 Identities=15% Similarity=0.034 Sum_probs=88.4
Q ss_pred ccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC-CChH---HHHHHHHHHHhcCChhHHHH
Q 010961 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDF---CLSALISGYANCGKMNDARR 259 (496)
Q Consensus 184 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~---~~~~l~~~~~~~~~~~~a~~ 259 (496)
-.|..++..++..+...+. +..-||-++.-....-+-+-..++++.+-+ -|.. -...++.+|.+.+..
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~----- 90 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTL----- 90 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCC-----
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcch-----
Confidence 3456666666666665543 344455555554455555555555555543 1111 123344444444433
Q ss_pred HHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC
Q 010961 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336 (496)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 336 (496)
....+..+.....+|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++.+.|++
T Consensus 91 ---------se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 ---------NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp ---------CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ---------HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 455667778888999999999999886443 4788888889999999999999999999999998864
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0096 Score=54.94 Aligned_cols=90 Identities=3% Similarity=-0.198 Sum_probs=55.7
Q ss_pred cccchhhHHHHHHHHHHc-----C--CCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHH
Q 010961 316 SLGFLEHGKQVHGHACKV-----G--VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (496)
..|++++|..++++.++. | .+....+++.|..+|...|++++|+.++++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~------------------------ 365 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK------------------------ 365 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH------------------------
Confidence 346677777777766542 1 112245566777777777777777776663
Q ss_pred HHHHHhhCCCCC---h-hhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 389 AKHIFRTMPNKS---L-ISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 389 a~~~~~~~~~~~---~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
+++++++...++ + .+++.|...|...|++++|..++++..+
T Consensus 366 aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 366 IIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 333334433332 2 4677788888888888888888777654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.078 Score=53.84 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=13.1
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
..|..+...+.+.++++.|.+.|..+
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455555555555555555555444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0072 Score=42.45 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=35.8
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKF-SLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 408 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
...+...|++++|...+++..+.. +.+.. .+..+..++...|++++|...++...+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445556666666766666666542 23445 66666666666677777777776666543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0085 Score=46.01 Aligned_cols=70 Identities=13% Similarity=-0.028 Sum_probs=35.3
Q ss_pred HcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchH----------HHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL----------EYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
+.+.+++|++.++...+. .+.+...+..+..++...+++ ++|+..|++.++..+. +...|..+..
T Consensus 14 r~~~feeA~~~~~~Ai~l----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 344556666666665552 222444555455555554443 3555555555555433 3445555555
Q ss_pred HHHhc
Q 010961 216 LYGKC 220 (496)
Q Consensus 216 ~~~~~ 220 (496)
+|...
T Consensus 89 ay~~l 93 (158)
T 1zu2_A 89 AYTSF 93 (158)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.034 Score=51.35 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=57.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHhcccchhhHHHHHHHHHHc-----C--CCchHHH
Q 010961 276 ISGYISNNEDTEALLLFHKMRRNG---VLE----DASTLASVLSACSSLGFLEHGKQVHGHACKV-----G--VIDDVIV 341 (496)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~m~~~g---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~ 341 (496)
+..+...|++++|+.++++..+.. +.| ...+++.+...|...|++++|..++.++++. | .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445567788888888888776531 112 2346667777777777777777777766542 2 1223445
Q ss_pred HHHHHHHHHhcCChhhHHHHHHh
Q 010961 342 ASALLDTYSKRGMPSDACKLFSE 364 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~ 364 (496)
++.|...|...|++++|+.++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Confidence 66777777777777777777664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.033 Score=49.41 Aligned_cols=72 Identities=8% Similarity=-0.031 Sum_probs=48.9
Q ss_pred CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHH
Q 010961 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 474 (496)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|...+++....+ |...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChH
Confidence 355666666666666677777777777777763 666666666777777777777777777776644 444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.027 Score=51.99 Aligned_cols=28 Identities=7% Similarity=-0.181 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
.+++.|...|...|++++|..++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4677788888888888888888877654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.034 Score=51.29 Aligned_cols=85 Identities=9% Similarity=-0.026 Sum_probs=63.4
Q ss_pred hCCCHHHHHHHHHHHHHC---CCC---C-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc-----C--CCchHHHHHHHH
Q 010961 281 SNNEDTEALLLFHKMRRN---GVL---E-DASTLASVLSACSSLGFLEHGKQVHGHACKV-----G--VIDDVIVASALL 346 (496)
Q Consensus 281 ~~~~~~~a~~~~~~m~~~---g~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~ 346 (496)
..|++++|..++++..+. -+. | ...+++.+...|...|++++|..++++.++. | .+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999988887652 122 2 2467888888999999999999999887652 3 223355688889
Q ss_pred HHHHhcCChhhHHHHHHhc
Q 010961 347 DTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~ 365 (496)
..|...|++++|+.++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 9999999999999888753
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.058 Score=47.85 Aligned_cols=138 Identities=12% Similarity=0.035 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHHh--c---ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh---cC-Chh-------hHHHHHH
Q 010961 300 VLEDASTLASVLSACS--S---LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK---RG-MPS-------DACKLFS 363 (496)
Q Consensus 300 ~~~~~~~~~~l~~~~~--~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~~~-------~a~~~~~ 363 (496)
.+.+...|...+++.. . ..+..+|..+|+++++.. +.....+..+..+|.. .+ ... .+.+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4667777888877643 2 345688999999999874 2223344433333321 11 111 1111111
Q ss_pred hcc--cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHH
Q 010961 364 ELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439 (496)
Q Consensus 364 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 439 (496)
.+. +.++.+|..+...+...|+++.|...++++.. |+...|..+...+.-.|++++|.+.+++.... .|...+|
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 111 55677888888778888999999999998874 77777778888899999999999999998885 6777666
Q ss_pred H
Q 010961 440 A 440 (496)
Q Consensus 440 ~ 440 (496)
.
T Consensus 347 ~ 347 (372)
T 3ly7_A 347 Y 347 (372)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.034 Score=38.84 Aligned_cols=59 Identities=10% Similarity=-0.008 Sum_probs=36.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHH-HHHHHHHHHHccchHHHHHHHHHHHHHcCC
Q 010961 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAF-ILATVIGACADLAALEYGKQIHSHILVNGL 203 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 203 (496)
....+.+.|++++|++.|++..+ ..| +.. .+..+..++...|+++.|.+.+++..+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ-----TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-----HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34455666777777777776665 223 334 555566666666677777777666666543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.19 Score=39.24 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=43.7
Q ss_pred HhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
...|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+..+ +..+.-.|...|+.+...++-+....
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA~~ 88 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIAQT 88 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555555554433 3344555555555555555555555555443 22333334444444444444333333
Q ss_pred CCCCCCHHHHHHHHHHHhccCchhhHHHHH
Q 010961 430 LDLRMDKFSLASVISACANISSLELGEQVF 459 (496)
Q Consensus 430 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (496)
.| -++.....+...|+++++.+++
T Consensus 89 ~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 89 RE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred Cc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 32 1222223333445555555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.28 Score=35.91 Aligned_cols=139 Identities=9% Similarity=0.006 Sum_probs=83.5
Q ss_pred hcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc-CchhhHHHHHHHHHhcCCHHHHHHHH
Q 010961 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIEDAKHIF 393 (496)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 393 (496)
.-.|..++..++..+...+. +..-||.++--....-+-+-..+.++.+-. -|. ...|++......+
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C~ 84 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECG 84 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHHH
Confidence 34566777777776666542 333445555444444444445555554431 111 1233444444444
Q ss_pred hhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCC
Q 010961 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468 (496)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 468 (496)
-.+.. +....+..+.....+|+-+.-.+++..+... .+|++.....+..+|.+.|+..++.+++.+.-+.|++
T Consensus 85 ~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 85 VINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33332 3344556667777888888888888875442 4778888888888888888888888888888887764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.4 Score=37.41 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=50.5
Q ss_pred HhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHH
Q 010961 114 AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193 (496)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 193 (496)
...|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|..... +..+.-.|...|+.+...+
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHHhCCHHHHHH
Confidence 3455555555555544 2344566666666666666666666655543 2333333444455544444
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
+-+.....|- ++.....+...|+++++.++|.+..+
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 4444333331 23333344445666666665554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.02 Score=39.63 Aligned_cols=64 Identities=9% Similarity=-0.128 Sum_probs=41.5
Q ss_pred chhhHHHHHhhhhccCc---cchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC
Q 010961 4 RIDYLARLLQSCNTHHS---IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (496)
|+..+..+..++...++ .++|..+++..++.. |+...+...+...+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55556666666544333 577777777777765 45554666677777777777777777777654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.3 Score=41.54 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=69.3
Q ss_pred HHHHHHHHhhCCC--CC---hhhHHHHHHHHHhC-----CChhhHHHHHHHHHhCCCCC--CHHHHHHHHHHHhcc-Cch
Q 010961 386 IEDAKHIFRTMPN--KS---LISWNSMIVGLSQN-----GSPIEALDLFCNMNKLDLRM--DKFSLASVISACANI-SSL 452 (496)
Q Consensus 386 ~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~-g~~ 452 (496)
...|...+++..+ |+ -..|..+...|.+. |+.++|.++|++..+. .| +..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCH
Confidence 4566777777664 44 35788899999884 9999999999999985 56 367888888888884 999
Q ss_pred hhHHHHHHHHHHcCCC--chHHHHHHH
Q 010961 453 ELGEQVFARVTIIGLD--SDQIISTSL 477 (496)
Q Consensus 453 ~~a~~~~~~~~~~~~~--~~~~~~~~l 477 (496)
+.+.+.+++....... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999887666 555544443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.062 Score=40.77 Aligned_cols=83 Identities=6% Similarity=-0.039 Sum_probs=59.1
Q ss_pred HHHHHHHHhhCC---CCChhhHHHHHHHHHhCC---ChhhHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCchhhHHH
Q 010961 386 IEDAKHIFRTMP---NKSLISWNSMIVGLSQNG---SPIEALDLFCNMNKLDLRM--DKFSLASVISACANISSLELGEQ 457 (496)
Q Consensus 386 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 457 (496)
...+.+-|.+.. .++..+...+.+++++.+ +.++++.+++...+.. .| +...+-.+.-++.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 334444444432 256677777888888888 5668999999888864 35 35566667778899999999999
Q ss_pred HHHHHHHcCCCchH
Q 010961 458 VFARVTIIGLDSDQ 471 (496)
Q Consensus 458 ~~~~~~~~~~~~~~ 471 (496)
.++.+.+. .|+-
T Consensus 93 y~~~lL~i--eP~n 104 (152)
T 1pc2_A 93 YVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHH--CTTC
T ss_pred HHHHHHhc--CCCC
Confidence 99988874 4543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.16 Score=43.26 Aligned_cols=124 Identities=15% Similarity=0.049 Sum_probs=72.5
Q ss_pred cCChhhHHHHHHhcCCCChH--HHHHHHHH-HHhc--CC------hhHHHHHHHhcCCCC-----cchHHHHHHHHHhC-
Q 010961 220 CGDFNSANQVLNMMKEPDDF--CLSALISG-YANC--GK------MNDARRVFDRTTDTS-----SVMWNSMISGYISN- 282 (496)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~--~~~~l~~~-~~~~--~~------~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~- 282 (496)
.++..+..+.+..+...++. .|..++.+ +... |. ...|...+++..+-| ...|..+...|.+.
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vP 213 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAP 213 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSC
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCC
Confidence 44455555666666544433 34444432 2322 32 345666666665532 34677777777773
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-ccchhhHHHHHHHHHHcCCC--chHHHHH
Q 010961 283 ----NEDTEALLLFHKMRRNGVLEDASTLASVLSACSS-LGFLEHGKQVHGHACKVGVI--DDVIVAS 343 (496)
Q Consensus 283 ----~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 343 (496)
|+.++|.+.|++..+.+..-+..++......++. .|+.+.+.+.+++.+..... |+....+
T Consensus 214 p~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 214 ESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred CccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 7888888888877774321125555566666666 37778888888877776555 5444333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.085 Score=36.45 Aligned_cols=64 Identities=8% Similarity=-0.074 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHhCCC---hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 401 LISWNSMIVGLSQNGS---PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 401 ~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
...+..+..++...++ .++|..++++..+.. +-+......+...+...|++++|...|+.+.+.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3344444444433222 455555555555542 224445555555555566666666666655543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.15 Score=38.24 Aligned_cols=107 Identities=9% Similarity=0.035 Sum_probs=75.4
Q ss_pred cCchhhHHHHHHHHHhcCCH------HHHHHHHhhCCC---CC-h---hhHHHHHHHHH---hCCChhhHHHHHHHHHhC
Q 010961 367 VYDTILLNTMITVYSSCGRI------EDAKHIFRTMPN---KS-L---ISWNSMIVGLS---QNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~---~~-~---~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~ 430 (496)
+.|+.+|-..+...-+.|+. ++..++|++... |+ . ..|--+---|+ ..+++++|.++|+.+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 66788888888888888888 777788877653 22 1 22332222222 357899999999998764
Q ss_pred CCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHH
Q 010961 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474 (496)
Q Consensus 431 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 474 (496)
+-.- ...|.....--.+.|+..+|.+++...+..+.+|....-
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 3222 667777777778899999999999999988877665333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.17 Score=35.71 Aligned_cols=63 Identities=5% Similarity=-0.198 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCC------CCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKLD------LRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
+..+...+...|++..|...++...+.- -.+....+..|..++.+.|+++.|...++++.+..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3456666667777777777776655421 12345567777777777777777777777776643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.056 Score=38.35 Aligned_cols=67 Identities=13% Similarity=-0.003 Sum_probs=43.1
Q ss_pred CcchhhHHHHHhhhhccCccchhhhhhHHHHHhcc-----CCCchHHHHHHHHHHHhcCChHHHHHHhhhCC
Q 010961 2 DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGI-----LNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68 (496)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 68 (496)
..++..+..+...+...+++..|...++..++... .+....++..|..+|.+.|++++|+..++++.
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34566677777777777777777777777666421 12233366666677777777777777666654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=94.81 E-value=1.3 Score=35.91 Aligned_cols=171 Identities=10% Similarity=0.139 Sum_probs=112.8
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC
Q 010961 38 NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAG 117 (496)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 117 (496)
++.. +-...+..+.+.|..+..-.+.+.+..++...-...+.++.+.++.+....+.+.+..+|...-...+.++.+.|
T Consensus 31 ~~~~-vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 31 DSYY-VRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp SSHH-HHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCHH-HHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3444 556677778888876655566666666777777777888888887666666666666788887788888888888
Q ss_pred ChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHH
Q 010961 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197 (496)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 197 (496)
+.+....+.+.+..++...-...+.++.+.|..+ +...+..+.. .++..+-...+.++.+.+.. .+...+..
T Consensus 110 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~~-~~~~~L~~ 181 (211)
T 3ltm_A 110 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK------DEDGWVRQSAADALGEIGGE-RVRAAMEK 181 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT------CSSHHHHHHHHHHHHHHCSH-HHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc------CCCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 8666656666566677777777788888777643 4455555443 25666666777777777764 45555555
Q ss_pred HHHcCCCcchhHHHHHHHHHHhc
Q 010961 198 ILVNGLDFDSVLGSSLVNLYGKC 220 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~ 220 (496)
+.+.+ +..+-...+.++...
T Consensus 182 ~l~d~---~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 182 LAETG---TGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHC---CHHHHHHHHHHHHC-
T ss_pred HHhCC---CHHHHHHHHHHHHhc
Confidence 55543 344444555555443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=94.47 E-value=1.5 Score=35.17 Aligned_cols=166 Identities=9% Similarity=0.137 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHH
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 122 (496)
+-...+..+.+.+.......+.+.+..++...-...+.++...++.+....+.+.+..++...-...+.++.+.++.+..
T Consensus 30 vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~ 109 (201)
T 3ltj_A 30 VRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV 109 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHH
Confidence 44455555556565444444555555566655556666666666655555555555556666666666666666665544
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 123 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
..+...+..++...-...+.++.+.+.. ++...+..+.. .++..+-...+.++...+..+ +...+..+.+..
T Consensus 110 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~------d~~~~vr~~A~~aL~~~~~~~-~~~~L~~~l~d~ 181 (201)
T 3ltj_A 110 EPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK------DEDGWVRQSAADALGEIGGER-VRAAMEKLAETG 181 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT------CSSHHHHHHHHHHHHHHCSHH-HHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc------CCCHHHHHHHHHHHHHhCchh-HHHHHHHHHhCC
Confidence 4455555555655555666666666653 33444444433 145555555566666665543 444444444432
Q ss_pred CCcchhHHHHHHHHHHh
Q 010961 203 LDFDSVLGSSLVNLYGK 219 (496)
Q Consensus 203 ~~~~~~~~~~l~~~~~~ 219 (496)
+..+-...+.++.+
T Consensus 182 ---~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 182 ---TGFARKVAVNYLET 195 (201)
T ss_dssp ---CHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHH
Confidence 33333344444433
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=94.45 E-value=1.6 Score=35.36 Aligned_cols=126 Identities=12% Similarity=0.185 Sum_probs=69.8
Q ss_pred CChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCc
Q 010961 55 GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNA 134 (496)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 134 (496)
++.+....+.+.+..++...-...+..+.+.|..+....+.+.+..+|...-...+.++.+.++.+....+.+.+..++.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~ 95 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDG 95 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCH
Confidence 33444444455555566666666777777777755555556666667766666666777777765555455555555665
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccch
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 187 (496)
..-...+.++.+.++.+ +...+..+.. .++...-...+.++...++
T Consensus 96 ~vr~~a~~aL~~~~~~~-~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 96 WVRQSAAVALGQIGDER-AVEPLIKALK------DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHHHHHHHHCCGG-GHHHHHHHTT------CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCcHH-HHHHHHHHHh------CCCHHHHHHHHHHHHHcCC
Confidence 55566666666666532 2333333322 2444444444444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.96 Score=34.27 Aligned_cols=79 Identities=13% Similarity=-0.085 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc---chhhHHHHHHHHHHcCCCc--hHHHHHHHHHHHHhcCChhhHHH
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLG---FLEHGKQVHGHACKVGVID--DVIVASALLDTYSKRGMPSDACK 360 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 360 (496)
..+.+-|.+..+.|. ++..+.-.+..++++.+ +.+++..+++.+.+.. .| ....+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 445555665555553 56666666666777766 6667888888777764 23 34444555666777777887777
Q ss_pred HHHhcc
Q 010961 361 LFSELK 366 (496)
Q Consensus 361 ~~~~~~ 366 (496)
.++.+.
T Consensus 93 y~~~lL 98 (152)
T 1pc2_A 93 YVRGLL 98 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.49 Score=43.82 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCC----CC-----hHHHHHHHHHHHhcCChhHHHHHHHhcCC------CC----cch
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKE----PD-----DFCLSALISGYANCGKMNDARRVFDRTTD------TS----SVM 271 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~----~~~ 271 (496)
..|...+...|++.+|..++..+.. .+ ...+..-++.|...+++.+|..++.++.. ++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777777888888877777641 11 23455566677777777777776665421 11 124
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRR 297 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 297 (496)
+..++..+...+++.+|.+.|.+...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55556666667777777776666543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.83 E-value=0.81 Score=34.35 Aligned_cols=107 Identities=13% Similarity=0.023 Sum_probs=66.9
Q ss_pred CchHHHHHHHHHHHHhcCCh------hhHHHHHHhcc---cCchh-hHHHHHH------HHHhcCCHHHHHHHHhhCCC-
Q 010961 336 IDDVIVASALLDTYSKRGMP------SDACKLFSELK---VYDTI-LLNTMIT------VYSSCGRIEDAKHIFRTMPN- 398 (496)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~---~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~- 398 (496)
+.|..++-..+...-+.|++ ++.+++|++.. +|+.. .|...+. .+...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34667777777777777888 77778887766 33321 1111111 12344788888888887743
Q ss_pred --CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 399 --KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 399 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
.=...|......-.++|+...|.+++.+....+..| ...+...+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 223455556666678889999999998888876333 33444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.13 E-value=0.34 Score=35.32 Aligned_cols=81 Identities=6% Similarity=-0.068 Sum_probs=56.4
Q ss_pred CHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChhh---HHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCchhhHH
Q 010961 385 RIEDAKHIFRTMP---NKSLISWNSMIVGLSQNGSPIE---ALDLFCNMNKLDLRM--DKFSLASVISACANISSLELGE 456 (496)
Q Consensus 385 ~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 456 (496)
.+..+.+-|.+.. .++..+--.+.+++.+..+... ++.+++.....+ .| .....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444332 2566676778888888877666 888888887764 34 3445556777889999999999
Q ss_pred HHHHHHHHcC
Q 010961 457 QVFARVTIIG 466 (496)
Q Consensus 457 ~~~~~~~~~~ 466 (496)
+.++.+.+..
T Consensus 95 ~~~~~lL~~e 104 (126)
T 1nzn_A 95 KYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999888743
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.00 E-value=5.6 Score=36.77 Aligned_cols=251 Identities=10% Similarity=0.019 Sum_probs=142.0
Q ss_pred cCccchhhhhhHHHHHh----ccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCC---ChhhHHHHH----HHHHhcC
Q 010961 18 HHSIHVGKQLHLHFLKK----GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR---NCFSWNAMI----EGFMKLG 86 (496)
Q Consensus 18 ~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~----~~~~~~~ 86 (496)
.++++.|.+.+-.+.+. +-.++...+...++..+...|+++...+.+.-+.+. -..+...++ ..+....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788888777666653 233455668889999999999999887666554331 112222233 3332333
Q ss_pred CH--HHHHHHHhhCCC-C---------ChhhHHHHHHHHHhcCChhHHHHHHhhcCC----CC-----cccHHHHHHHHH
Q 010961 87 HK--EKSLQLFNVMPQ-K---------NDFSWNMLISGFAKAGELKTARTLFNDMPR----RN-----AIAWNSMIHCYV 145 (496)
Q Consensus 87 ~~--~~a~~~~~~~~~-~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-----~~~~~~li~~~~ 145 (496)
.. +.-..+.+.... . .......|...+...|++.+|.+++..+.. .+ +..+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 32 223344444332 1 122345677888889999999999888752 11 345667778888
Q ss_pred HcCCHHHHHHHHHHHHHchhcc-CCcC--HHHHHHHHHHHHccchHHHHHHHHHHHHHcC-CCcchhHH----HHHHHHH
Q 010961 146 RNGFAREAVRLFKELNSDLVER-LQCD--AFILATVIGACADLAALEYGKQIHSHILVNG-LDFDSVLG----SSLVNLY 217 (496)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~----~~l~~~~ 217 (496)
..+++.+|..++++........ ..|+ ...+...+..+...+++..|-+.|.++...- ...+...+ ..++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 9999999999888875321111 1222 2345566677777888888877777665421 11122111 1111111
Q ss_pred HhcCChhhHHHHHHh----cCCCChHHHHHHHHHHHhc--CChhHHHHHHHhcCCCC
Q 010961 218 GKCGDFNSANQVLNM----MKEPDDFCLSALISGYANC--GKMNDARRVFDRTTDTS 268 (496)
Q Consensus 218 ~~~~~~~~a~~~~~~----~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~ 268 (496)
.-.+..+.-..++.. -.-++...+..++.+|... .+++...+.|.....++
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 112221222222222 1224566778888887654 45677777776655443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.66 E-value=6.2 Score=34.18 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHH----HHHHHHHCCCCCCHHHHHHHHHHH
Q 010961 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL----LFHKMRRNGVLEDASTLASVLSAC 314 (496)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~g~~~~~~~~~~l~~~~ 314 (496)
..|.++..=|.+.+++++|++++... ...+.+.|+...|-. +++...+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45555666666666666666554421 233444555544444 234444556666666665555554
Q ss_pred hc
Q 010961 315 SS 316 (496)
Q Consensus 315 ~~ 316 (496)
..
T Consensus 103 ~~ 104 (312)
T 2wpv_A 103 AE 104 (312)
T ss_dssp TT
T ss_pred HH
Confidence 33
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=1.3 Score=40.26 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=37.9
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH-----HcCCCchHHHH
Q 010961 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-----IIGLDSDQIIS 474 (496)
Q Consensus 406 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~ 474 (496)
.++..+...|++.+|+..+..+.... +-+...+..++.++.+.|+..+|.+.|+.+. +.|+.|++.+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34455555666666666665555431 3355566666666666666666666665442 24666655443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.08 E-value=0.49 Score=46.66 Aligned_cols=51 Identities=12% Similarity=0.213 Sum_probs=38.7
Q ss_pred HHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010961 111 SGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELN 161 (496)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 161 (496)
+.+...|+++-|+++-++... | +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345567888888888877653 4 45688888888888888888888887774
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.95 E-value=7.7 Score=34.94 Aligned_cols=89 Identities=11% Similarity=-0.033 Sum_probs=50.7
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCchhhHHHHHHHHHH--cCCCchHHHHH---
Q 010961 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMD-----KFSLASVISACANISSLELGEQVFARVTI--IGLDSDQIIST--- 475 (496)
Q Consensus 406 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~--- 475 (496)
.++..|...|++.+|.+++.++.+.=-+.| ...+..-+..|...|++.++...+..... ..+.+++.+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467777788888888777777765311111 12355555567777888888877775543 22223332221
Q ss_pred -HHHHHHH-hcCChHHHHHhh
Q 010961 476 -SLVDFYC-KCGFIKMDEYYL 494 (496)
Q Consensus 476 -~l~~~~~-~~g~~~~A~~~~ 494 (496)
.-+..+. ..+++++|...|
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHH
Confidence 2222344 567777776654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.70 E-value=4.9 Score=42.45 Aligned_cols=64 Identities=5% Similarity=-0.044 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC--HHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD--AFILATVIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
|..++..+-+.+.++.++++-+...+... ...++ ...|..+.+.+...+++++|...+..+...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 44555555566666666655554443200 01111 113455556666666666665555555443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.29 E-value=3.7 Score=31.44 Aligned_cols=61 Identities=5% Similarity=-0.107 Sum_probs=42.9
Q ss_pred hHHHHHhhhhccCccchhhhhhHHHHHhc-cCCCc------hHHHHHHHHHHHhcCChHHHHHHhhhC
Q 010961 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNST------LPIANRLLQMYMRCGNPTDALLLFDEM 67 (496)
Q Consensus 7 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 67 (496)
.+..=++.+...+.++.|..+...++... ..++. +.++..+..++...|++.+|...|++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45556677778888888888888866543 22332 224566778888889999998888874
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=90.26 E-value=5.9 Score=31.57 Aligned_cols=176 Identities=12% Similarity=0.138 Sum_probs=82.7
Q ss_pred HhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHH
Q 010961 63 LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142 (496)
Q Consensus 63 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 142 (496)
+++.+..+|...-...+.++.+.+..+....+.+.+..++...-...+..+.+.|..+....+.+.+..++...-...+.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~ 98 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAV 98 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33344445555555555555555554444445555555565555555555666665544444444444555555555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC
Q 010961 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222 (496)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (496)
++.+.++.+ +...+..+.. .++...-...+.++...++.+ +...+..+.. .++..+-...+.++...|+
T Consensus 99 aL~~~~~~~-~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 99 ALGQIGDER-AVEPLIKALK------DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHCCGG-GHHHHHHHTT------CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHhCcHH-HHHHHHHHHc------CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 666655543 2333333322 244444444555555544432 2222222222 2344455555555555555
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHH
Q 010961 223 FNSANQVLNMMKEPDDFCLSALISGYA 249 (496)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~l~~~~~ 249 (496)
.+....+.+.+.+++...-...+.++.
T Consensus 168 ~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 168 ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 333323333333344444334444333
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.24 E-value=16 Score=38.52 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=30.8
Q ss_pred HHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcC
Q 010961 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265 (496)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (496)
.++..+...+..+.+..+..-..+ ++...-.+..++...|++++|.+.|.+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 344555556666666655544433 33333455566777777777777776543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.03 E-value=3.3 Score=40.89 Aligned_cols=51 Identities=14% Similarity=0.008 Sum_probs=35.1
Q ss_pred HHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010961 347 DTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397 (496)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 397 (496)
+.+...|+++-|+++-++.. +.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33455677777777777666 4456677777777777777777777777664
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.50 E-value=1.9 Score=31.33 Aligned_cols=80 Identities=13% Similarity=-0.056 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhh---HHHHHHHHHHcCCC-chHHHHHHHHHHHHhcCChhhHHHH
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH---GKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKL 361 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 361 (496)
..+.+-|......| .|+..+--.+..++.+..+... +..++..+.+.+.+ ......-.|.-++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444444433 2444444445555555544433 55555555554311 1223333344455556666666665
Q ss_pred HHhcc
Q 010961 362 FSELK 366 (496)
Q Consensus 362 ~~~~~ 366 (496)
++.+.
T Consensus 97 ~~~lL 101 (126)
T 1nzn_A 97 VRGLL 101 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.47 E-value=3.3 Score=28.50 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHc
Q 010961 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333 (496)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 333 (496)
+.-+..+-++.+....+.|++......+++|.+.+++..|..+++-+..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44456666666666667777777777777777777777777777766543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.93 E-value=3.3 Score=28.53 Aligned_cols=67 Identities=7% Similarity=-0.022 Sum_probs=47.9
Q ss_pred Hhccc-chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHH
Q 010961 314 CSSLG-FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVY 380 (496)
Q Consensus 314 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 380 (496)
+.+.. +.-+..+-++.+......|++.+..+.+++|.+.+++.-|.++|+.++ .+...+|..+++-.
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 89 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 33444 455666777777777788888888888888888888888888888777 33445677766543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.83 E-value=11 Score=32.82 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=78.3
Q ss_pred HHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHH----HHHHHchhccCCcCHHHHHHHHHHHHc
Q 010961 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF----KELNSDLVERLQCDAFILATVIGACAD 184 (496)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~~~~~~~~~~~p~~~~~~~ll~~~~~ 184 (496)
+..-|.+.+++++|++++.. -...+.+.|+...|.++- +-..+ .++++|......++..+..
T Consensus 41 i~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~---~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQ---AGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHH---HTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHh
Confidence 44445555556555554422 122333444444433332 22233 3455666655555555543
Q ss_pred cch-----HHHHHHHHHHHHHcC--CCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHH
Q 010961 185 LAA-----LEYGKQIHSHILVNG--LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257 (496)
Q Consensus 185 ~~~-----~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (496)
... ..-..+...+-.+.| ..-++.....+...|.+.+++.+|...|-.-.+++...+..++..+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 321 112222333333333 3335566677777888888888887777432233335665555555444432222
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010961 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296 (496)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 296 (496)
--+ ..-.+-.|...++...|..+++...
T Consensus 187 dlf-----------iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 187 PLY-----------CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHH-----------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH-----------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 111 1112233455666666666555544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.47 E-value=12 Score=32.66 Aligned_cols=40 Identities=23% Similarity=0.152 Sum_probs=19.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHH
Q 010961 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408 (496)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 408 (496)
|+.....+...|.+.+++.+|+..|-.-.+++...+..++
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL 174 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARME 174 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHH
Confidence 3444555556666666666666655332223334443333
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.18 E-value=4.7 Score=27.59 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=43.3
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHH
Q 010961 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 439 (496)
+..+...|++++|..+.+...-||...|-.|- -.+.|-.+++...+.++...| .|....|
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34567788888888888888888888876553 346787888888777888776 5544444
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.66 E-value=5.1 Score=27.45 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=40.4
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHH
Q 010961 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439 (496)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 439 (496)
..+...|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++...| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45667788888888888888888887765533 45677777777777777766 4444333
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.17 E-value=32 Score=35.04 Aligned_cols=87 Identities=17% Similarity=0.125 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhhhCCCC-------C-------hhhH----HHHHHHHHhcCC--------HHHHHHH
Q 010961 41 LPIANRLLQMYMRCGNPTDALLLFDEMPRR-------N-------CFSW----NAMIEGFMKLGH--------KEKSLQL 94 (496)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~-------~~~~----~~l~~~~~~~~~--------~~~a~~~ 94 (496)
......++.-+.+.+...+|+.+.-+..+- + ...| .-++++....-. ++-+.++
T Consensus 145 ~~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~I 224 (963)
T 4ady_A 145 TSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDF 224 (963)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Confidence 335566666777777777776665555441 1 1222 223333322222 2335556
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcC
Q 010961 95 FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130 (496)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 130 (496)
|.++..| -|..++.+..+.++.+.+.++|..+.
T Consensus 225 y~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 225 LMNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6665433 35667777788889999999998864
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.09 E-value=6.4 Score=28.84 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=48.7
Q ss_pred CChhhHHHHHHHHHhCCCh---hhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchH
Q 010961 399 KSLISWNSMIVGLSQNGSP---IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 471 (496)
++..+--.+.+++.+..+. .+++.+++...+.+-.-....+-.|.-++.+.|+++.|.+..+.+.+ +.|+-
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 4555555667777776654 46788888877754111345666677788899999999999988876 44553
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.08 E-value=16 Score=31.59 Aligned_cols=128 Identities=9% Similarity=0.066 Sum_probs=59.3
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHH----HHHHHHchhccCCcCHHHHHHHHHHHH
Q 010961 108 MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRL----FKELNSDLVERLQCDAFILATVIGACA 183 (496)
Q Consensus 108 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~p~~~~~~~ll~~~~ 183 (496)
++..-|.+.+++++|.+++.. -...+.+.|+...|.++ ++-..+ .+++++......++..+.
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~---~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDL---AEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHH
Confidence 344455555555555555432 12233444554444443 222333 345666655555555544
Q ss_pred ccc-----hHHHHHHHHHHHHHcCC--CcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHH
Q 010961 184 DLA-----ALEYGKQIHSHILVNGL--DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249 (496)
Q Consensus 184 ~~~-----~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 249 (496)
... ..+-..+...+-.+.|- .-++.....+...|.+.|++.+|...|-.-...+...+..++.-+.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 321 12222333333333332 2245556666666667777777666554222223444444444333
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=85.65 E-value=27 Score=33.77 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhCCCCChh---hHHHHHHHHHhcCCHHHHHHHHhhCCC-CCh-hhHHHHHHHHHhcCC
Q 010961 44 ANRLLQMYMRCGNPTDALLLFDEMPRRNCF---SWNAMIEGFMKLGHKEKSLQLFNVMPQ-KND-FSWNMLISGFAKAGE 118 (496)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~l~~~~~~~~~ 118 (496)
|.....+ .+.|++..+..+...+..-... .|..+...+ .....++...++++-.. |-. ..-..-+..+.+.++
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~ 87 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCC
Confidence 3333333 3567777777776666431112 232222221 22256666666666543 222 122334555667778
Q ss_pred hhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010961 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163 (496)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 163 (496)
+...+.++.. ...+...-.....+....|+..+|......+-..
T Consensus 88 w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 88 WRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 8887776665 3334445556667777788877777777666653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.51 E-value=4.3 Score=36.71 Aligned_cols=69 Identities=12% Similarity=0.037 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHH-----cCCCcchhHH
Q 010961 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV-----NGLDFDSVLG 210 (496)
Q Consensus 138 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 210 (496)
..++..+...|++++++..+..+... .+-+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34556666777777777777777652 333566777777777777777777777776543 4777766543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.99 E-value=7 Score=28.60 Aligned_cols=44 Identities=9% Similarity=0.122 Sum_probs=20.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 010961 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331 (496)
Q Consensus 288 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 331 (496)
..+-++.+....+.|++......+++|-+.+++..|..+++-++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.93 E-value=24 Score=31.77 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcCC--------CChHHHHHHHHHHHhcCC-hhHHHHHHHhcCC---CCcchH-----
Q 010961 210 GSSLVNLYGKCGDFNSANQVLNMMKE--------PDDFCLSALISGYANCGK-MNDARRVFDRTTD---TSSVMW----- 272 (496)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~----- 272 (496)
...|...|.+.|+.++...++..... ......+.++..+....+ .+.-.++..+..+ ..-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777766653 123345556666655332 2223333332221 112233
Q ss_pred -HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhcccchhhHHHHHHHHHHc--CCCchHHHHHH
Q 010961 273 -NSMISGYISNNEDTEALLLFHKMRRNGVLED-----ASTLASVLSACSSLGFLEHGKQVHGHACKV--GVIDDVIVASA 344 (496)
Q Consensus 273 -~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 344 (496)
.-++..|...|++.+|..++..+.+.=-..| ...+..-+..|...+++.++...+...... .+.+++.+...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 2467889999999999999988876311111 233555566788889999999999887643 22233332221
Q ss_pred ----HHHHHH-hcCChhhHHHHHHhc
Q 010961 345 ----LLDTYS-KRGMPSDACKLFSEL 365 (496)
Q Consensus 345 ----l~~~~~-~~~~~~~a~~~~~~~ 365 (496)
-...+. ..+++..|...|-+.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 223345 688999888777654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.80 E-value=9.2 Score=28.01 Aligned_cols=61 Identities=8% Similarity=-0.014 Sum_probs=42.9
Q ss_pred chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHH
Q 010961 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITV 379 (496)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~ 379 (496)
|.-+..+-++.+....+.|++.+..+.++++.+.+++.-|..+|+.++ .+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 344555666666666777888888888888888888888888887776 3445567666654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.70 E-value=12 Score=27.41 Aligned_cols=68 Identities=12% Similarity=-0.036 Sum_probs=45.9
Q ss_pred CCcCHHHHHHHHHHHHccc---hHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 168 LQCDAFILATVIGACADLA---ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 168 ~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
-.|+..+-.....++.++. +...+..+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+.+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4456655555555555443 5567888888888776433344455677788888999999888888764
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=82.03 E-value=22 Score=30.00 Aligned_cols=122 Identities=14% Similarity=-0.023 Sum_probs=62.5
Q ss_pred CchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcC--CHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 010961 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG--RIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413 (496)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 413 (496)
.++..+-...+.++...|+.+..-.+...+..++...-...+.++...| ..+....+...+..++..+-...+.++.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3555555666666766666443333333334556555555566666655 33333344444555676666667777777
Q ss_pred CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
.|+....-.+...+.+ |+ .-...+.++.+.|+. .+...+..+.+
T Consensus 219 ~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 219 RKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp TTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred hCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 7765444334333332 33 223445556666663 44444444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=82.00 E-value=48 Score=33.80 Aligned_cols=245 Identities=10% Similarity=-0.009 Sum_probs=110.9
Q ss_pred HHHHhcCChhHHHHHHHhcCCC----Cc--chHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 010961 246 SGYANCGKMNDARRVFDRTTDT----SS--VMWNSMISGYISNNEDTEALLLFHKMRRNGV-------LEDASTLASVLS 312 (496)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-------~~~~~~~~~l~~ 312 (496)
-+.+..|+.++++.+++..... +. ..=..+.-+....|..++++.++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3455677778888888776641 11 1222233344455555567776666554211 011111112222
Q ss_pred HHhcccc-hhhHHHHHHHHHHcCCCchH--HHHHHHHHHHHhcCChhhHHHHHHhccc-CchhhHHHH--HHHHHhcCCH
Q 010961 313 ACSSLGF-LEHGKQVHGHACKVGVIDDV--IVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTM--ITVYSSCGRI 386 (496)
Q Consensus 313 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l--~~~~~~~~~~ 386 (496)
++.-.|. -+++...+..+....- +.. ..--+|...+...|+.+....++..+.. .+..+...+ .-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2222222 2344444444443221 111 1112233334455666666666655442 122222222 2333456666
Q ss_pred HHHHHHHhhCCC-CChh-hHH---HHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 387 EDAKHIFRTMPN-KSLI-SWN---SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 387 ~~a~~~~~~~~~-~~~~-~~~---~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
+.+..+++.+.. .++. -|. ++..+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 666666555542 2222 222 34455666777666666777766531 22233333333344455666666666655
Q ss_pred HHHcCCCchHHHHHHHHHHHHhcCCh-HHHHHh
Q 010961 462 VTIIGLDSDQIISTSLVDFYCKCGFI-KMDEYY 493 (496)
Q Consensus 462 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~ 493 (496)
+.+.+ .|....-..+.-+....|+. .+|.+.
T Consensus 620 L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 620 LSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp GGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred HHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 44432 34444444444444444433 344443
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=81.74 E-value=23 Score=29.94 Aligned_cols=47 Identities=9% Similarity=0.001 Sum_probs=21.9
Q ss_pred cchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhc
Q 010961 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251 (496)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (496)
++..+-...+.++...|+.+..-.+.+.+.+++...-...+.+....
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp SCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 45555555556666665544444444444555554444444444443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.25 E-value=15 Score=27.37 Aligned_cols=70 Identities=9% Similarity=0.108 Sum_probs=49.9
Q ss_pred CChhhHHHHHHHHHhCCCh---hhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCch
Q 010961 399 KSLISWNSMIVGLSQNGSP---IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 470 (496)
++..+--.+.+++.+..+. .+++.+++.....+-.-.....-.|.-++.+.|+++.|.+..+.+.+. .|+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 5556666677788877654 468888888877531123445566777899999999999999998884 454
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 496 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.002
Identities = 19/134 (14%), Positives = 49/134 (36%), Gaps = 12/134 (8%)
Query: 45 NRLLQMYMRCGNPTDALLLFD---EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN---VM 98
L +Y G A+ + E+ ++ + + G ++ +N +
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300
Query: 99 PQKNDFSWNMLISGFAKAGELKTARTLFN---DMPRRNAIAWNSMIHCYVRNGFAREAVR 155
+ S N L + + G ++ A L+ ++ A A +++ + G +EA+
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 156 LFK---ELNSDLVE 166
+K ++ +
Sbjct: 361 HYKEAIRISPTFAD 374
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 496 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.24 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.13 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.97 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.85 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.71 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.7 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.37 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.36 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.28 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.28 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.23 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.2 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.18 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.17 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.13 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.06 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.02 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.91 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.81 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.75 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.74 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.66 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.64 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.64 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.61 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.61 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.57 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.44 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.42 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.2 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.05 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.01 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.99 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.9 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.86 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.38 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.33 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.94 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.31 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.08 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.77 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.7 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.48 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.48 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.34 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.43 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.3e-21 Score=175.08 Aligned_cols=366 Identities=12% Similarity=0.025 Sum_probs=211.7
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHH
Q 010961 80 EGFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREA 153 (496)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a 153 (496)
..+.+.|++++|++.++++.+ | ++..+..+..++.+.|++++|...|+++.+ | +..+|..+..++.+.|++++|
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccc
Confidence 344455555555555555543 2 234445555555555555555555555432 2 233455555555555555555
Q ss_pred HHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 154 ~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
++.+...... ...+..............+.................
T Consensus 87 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 132 (388)
T d1w3ba_ 87 IEHYRHALRL----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP------------------------------ 132 (388)
T ss_dssp HHHHHHHHHH----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT------------------------------
T ss_pred cccccccccc----cccccccccccccccccccccccccccccccccccc------------------------------
Confidence 5555555441 112222222222222222222222222222222211
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010961 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310 (496)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 310 (496)
................+....+...+.+... .+...+..+...+...|++++|...+++..+.. +-+...+..+
T Consensus 133 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 209 (388)
T d1w3ba_ 133 --DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINL 209 (388)
T ss_dssp --TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred --ccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 2222333333334444444444444443322 123455555666666677777777766665532 2344556666
Q ss_pred HHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHH
Q 010961 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIE 387 (496)
Q Consensus 311 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 387 (496)
...+...|++++|...+......+ +.+...+..+...+...|++++|...|++.. +.++.++..+...+...|+++
T Consensus 210 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 288 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHH
T ss_pred hhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 666677777777777777666654 3344555666677777777777777777655 344556677777777777777
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 388 DAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 388 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
+|.+.++.... .+...+..+...+...|++++|++.+++..+.. +-+..++..+..++...|++++|...+++..+
T Consensus 289 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777776543 455677778888888888888888888887752 33566788888888888999999888888876
Q ss_pred cCCCc-hHHHHHHHHHHHHhcCC
Q 010961 465 IGLDS-DQIISTSLVDFYCKCGF 486 (496)
Q Consensus 465 ~~~~~-~~~~~~~l~~~~~~~g~ 486 (496)
. .| ++..+..|+.+|.+.||
T Consensus 368 l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 368 I--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp T--CTTCHHHHHHHHHHHHHTCC
T ss_pred h--CCCCHHHHHHHHHHHHHcCC
Confidence 4 34 46778888888887775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4e-21 Score=176.45 Aligned_cols=365 Identities=13% Similarity=0.047 Sum_probs=242.9
Q ss_pred HHHHHHhcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChh
Q 010961 47 LLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGELK 120 (496)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 120 (496)
+...+.+.|++++|++.|+++.+ | ++.++..+..++.+.|++++|++.++++.+ | +..++..+..++.+.|+++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 56778899999999999999864 4 567889999999999999999999999875 3 5678899999999999999
Q ss_pred HHHHHHhhcCCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHH
Q 010961 121 TARTLFNDMPRR---NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197 (496)
Q Consensus 121 ~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 197 (496)
+|...+....+. +...+..........+....+.......... ..................+....+...+..
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY----NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccchhhhhHHHHHH
Confidence 999999988752 3444555555666667766666666665552 334444555556666677777777777777
Q ss_pred HHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHH
Q 010961 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 274 (496)
.....+. +...+..+...+...|++++|...+++..+ | +...|..+...+...|++++|...+
T Consensus 161 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~------------- 226 (388)
T d1w3ba_ 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY------------- 226 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHH-------------
T ss_pred hhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHH-------------
Confidence 7665433 455667777778888888888888776553 2 2334444444455555555554444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
+.....+ +.+...+..+...+.+.|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 227 ------------------~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 286 (388)
T d1w3ba_ 227 ------------------LRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp ------------------HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSC
T ss_pred ------------------HHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 4444332 2233334444444444555555555555544432 2234445555555555555
Q ss_pred hhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 010961 355 PSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMN 428 (496)
Q Consensus 355 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 428 (496)
+++|.+.++... +.+...+..+...+...|++++|++.|++..+ | +..++..+...|.+.|++++|.+.|++..
T Consensus 287 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555444 33444555566666666666666666666554 3 45667788888888888999998888887
Q ss_pred hCCCCC-CHHHHHHHHHHHhccCc
Q 010961 429 KLDLRM-DKFSLASVISACANISS 451 (496)
Q Consensus 429 ~~~~~p-~~~~~~~l~~~~~~~g~ 451 (496)
+. .| +...|..+..++.+.||
T Consensus 367 ~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 367 RI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TT--CTTCHHHHHHHHHHHHHTCC
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCC
Confidence 75 45 46678888888777665
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=7.6e-13 Score=117.30 Aligned_cols=258 Identities=12% Similarity=0.057 Sum_probs=148.4
Q ss_pred HHHHHHHhcCChhhHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCH
Q 010961 212 SLVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNED 285 (496)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 285 (496)
.....+.+.|++++|...|+++.+ | +..+|..+..++...|++++|...|++..+ .+...|..+...|...|++
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 456667788888888888888764 3 356778888888888888888888877654 3356777777888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 365 (496)
++|.+.++..... .|+.............. .+.......+..+...+.+.+|.+.|.+.
T Consensus 104 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRY--TPAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHh--ccchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 8888888887764 22211100000000000 00000000111122223334444444443
Q ss_pred c-----cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHH
Q 010961 366 K-----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437 (496)
Q Consensus 366 ~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 437 (496)
. ..++..+..+...+...|++++|...|++... .+..+|..+...|...|++++|.+.+++..+.. +-+..
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 241 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIR 241 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHH
Confidence 3 11233445555555566666666666655432 245566677777777777777777777776642 22455
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHcC----------CCchHHHHHHHHHHHHhcCChHHHH
Q 010961 438 SLASVISACANISSLELGEQVFARVTIIG----------LDSDQIISTSLVDFYCKCGFIKMDE 491 (496)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~ 491 (496)
.|..+..+|.+.|++++|...|++.++.. ......++..+-.++...|+.+.+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 67777777777777777777777665421 1111234555666666666665543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.1e-12 Score=114.44 Aligned_cols=93 Identities=12% Similarity=-0.052 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (496)
.+..+...+...|++++|+..|++..... +-+...+..+...+...|++++|.+.++.+.+.. +.+..++..+..+|.
T Consensus 174 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 174 VQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCI 251 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHH
Confidence 34444455555555555555555544431 2234444444555555555555555555554432 223344444555555
Q ss_pred hcCChhhHHHHHHhc
Q 010961 351 KRGMPSDACKLFSEL 365 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~ 365 (496)
..|++++|+..|++.
T Consensus 252 ~~g~~~~A~~~~~~a 266 (323)
T d1fcha_ 252 NLGAHREAVEHFLEA 266 (323)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 555555555555443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=6.7e-09 Score=92.56 Aligned_cols=182 Identities=12% Similarity=0.043 Sum_probs=103.9
Q ss_pred HHHHhcccchhhHHHHHHHHHHcC----CCchHHHHHHHHHHHHhcCChhhHHHHHHhcc-------c---CchhhHHHH
Q 010961 311 LSACSSLGFLEHGKQVHGHACKVG----VIDDVIVASALLDTYSKRGMPSDACKLFSELK-------V---YDTILLNTM 376 (496)
Q Consensus 311 ~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~---~~~~~~~~l 376 (496)
...+...|+++.+...+....... .......+......+...++...+...+.... . .....+..+
T Consensus 140 a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T d1hz4a_ 140 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 219 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHH
Confidence 334444555555555555444321 11122333334444555555555555444333 0 012234445
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCChhhHHHHHHHHHh----CCCCCC-HHHHHHHHH
Q 010961 377 ITVYSSCGRIEDAKHIFRTMPNK-------SLISWNSMIVGLSQNGSPIEALDLFCNMNK----LDLRMD-KFSLASVIS 444 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~l~~ 444 (496)
...+...|+++.|...++...+. ....+..+...+...|++++|...+++... .+..|+ ...+..+..
T Consensus 220 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 299 (366)
T d1hz4a_ 220 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 299 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 55666677777777777766541 123455677788888888888888887653 344443 456777888
Q ss_pred HHhccCchhhHHHHHHHHHH----cCCCc----hHHHHHHHHHHHHhcCChHHHHH
Q 010961 445 ACANISSLELGEQVFARVTI----IGLDS----DQIISTSLVDFYCKCGFIKMDEY 492 (496)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~g~~~~A~~ 492 (496)
++.+.|++++|.+.+++..+ .|... .......++..+...|+.+++.+
T Consensus 300 ~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 300 LYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 88888999999888886644 23221 12334556666777777766643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=4.1e-09 Score=94.00 Aligned_cols=225 Identities=13% Similarity=0.060 Sum_probs=156.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc----CCC--c-h
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRN----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV----GVI--D-D 338 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 338 (496)
++..+...+...|++++|+..|++..+. +..+ ....+..+...+...|++..+...+...... +.. + .
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 4566667777888888888888776542 1111 1233445555677788888888888776542 111 1 2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhccc--------CchhhHHHHHHHHHhcCCHHHHHHHHhhCC-------CC---C
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELKV--------YDTILLNTMITVYSSCGRIEDAKHIFRTMP-------NK---S 400 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~---~ 400 (496)
...+..+...+...|+++.+...+..... .....+......+...++...+...+.+.. .. .
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 33556677889999999999999887761 122345556667777888877766665443 21 1
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCchhhHHHHHHHHHH----cCCCch-HH
Q 010961 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM---DKFSLASVISACANISSLELGEQVFARVTI----IGLDSD-QI 472 (496)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~ 472 (496)
...+..+...+...|++++|...+++........ ....+..+..++...|++++|...++.+.. .+..|+ ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 2356667778889999999999999876643222 234566788889999999999999997753 355454 46
Q ss_pred HHHHHHHHHHhcCChHHHHHhhh
Q 010961 473 ISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.+..+..+|.+.|++++|.+.++
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~ 315 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLL 315 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 78889999999999999999876
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=4.6e-09 Score=91.57 Aligned_cols=221 Identities=9% Similarity=0.016 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcCC--C-CcchHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010961 239 FCLSALISGYANCGKMNDARRVFDRTTD--T-SSVMWNSMISGYISNN-EDTEALLLFHKMRRNGVLEDASTLASVLSAC 314 (496)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 314 (496)
..++.+...+.+.+..++|+++++++++ | +..+|+....++...| ++++|+..++...+.. +-+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 3455566666677777777777776654 2 2345666666666655 3677777777766542 33456666666666
Q ss_pred hcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCC------
Q 010961 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGR------ 385 (496)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~------ 385 (496)
.+.|++++|...+..+.+.. +.+...|..+..++...|++++|++.+++.. +.+...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhh
Confidence 77777777777777777654 3455666667777777777777777777666 3344455555544444433
Q ss_pred HHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcc--CchhhHHHHH
Q 010961 386 IEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVISACANI--SSLELGEQVF 459 (496)
Q Consensus 386 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~--g~~~~a~~~~ 459 (496)
+++|...+....+ | +...|+.+...+.. ....++.+.++...+....+ +...+..++..|... +..+.+...+
T Consensus 202 ~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~ 280 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 280 (315)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred hHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3455555555443 2 34455555444333 23455555555554432111 233444444444322 3334444444
Q ss_pred HHH
Q 010961 460 ARV 462 (496)
Q Consensus 460 ~~~ 462 (496)
++.
T Consensus 281 ~ka 283 (315)
T d2h6fa1 281 NKA 283 (315)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1e-09 Score=95.83 Aligned_cols=114 Identities=7% Similarity=0.031 Sum_probs=51.5
Q ss_pred hhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcC-ChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHH
Q 010961 15 CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG-NPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEK 90 (496)
Q Consensus 15 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 90 (496)
+.+.+.+++|..+++.+++.. |....+|+....++...| ++++|+..++...+ .+..+|+.+...+.+.|++++
T Consensus 53 ~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~e 130 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 130 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHH
Confidence 333444455555555555443 333334444444444433 24445444444432 233444444444444455555
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcC
Q 010961 91 SLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMP 130 (496)
Q Consensus 91 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 130 (496)
|++.++++.+ .+...|..+...+...|++++|++.++.+.
T Consensus 131 Al~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al 173 (315)
T d2h6fa1 131 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 173 (315)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5554444443 233444444444444444444444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=3.1e-08 Score=86.08 Aligned_cols=180 Identities=14% Similarity=-0.012 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364 (496)
Q Consensus 285 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 364 (496)
.++|..+|++..+...+.+...+...+....+.|+.+.|..+++.+.+........++..++....+.|+.+.|.++|+.
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34555555555544333344444445555555566666666666655543323333455555555556666666666655
Q ss_pred cc---cCchhhHHHHHHH-HHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCC-CCCC-
Q 010961 365 LK---VYDTILLNTMITV-YSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMD- 435 (496)
Q Consensus 365 ~~---~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~- 435 (496)
.. +.+...|...... +...|+.+.|..+|+.+.+ .+...|...+..+...|+.+.|..+|++..... .+|+
T Consensus 160 al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~ 239 (308)
T d2onda1 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 54 2222223222222 2234566666666666554 244566677777777777777777777766642 2332
Q ss_pred -HHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 436 -KFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 436 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
...|...+.--...|+.+.+..+.+++.+
T Consensus 240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 240 SGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24566666666667777777777776654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=5.5e-08 Score=84.49 Aligned_cols=177 Identities=13% Similarity=0.071 Sum_probs=141.8
Q ss_pred cchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cC-c-hhhHHHHHHHHHhcCCHHHHHHHH
Q 010961 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VY-D-TILLNTMITVYSSCGRIEDAKHIF 393 (496)
Q Consensus 318 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~-~~~~~~l~~~~~~~~~~~~a~~~~ 393 (496)
+..+++..+++...+...+.+...+...+..+...|+++.|..+|+++. .| + ...|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4567888999998876556677788888999999999999999999987 22 3 336888999999999999999999
Q ss_pred hhCCC--C-ChhhHHHHHHH-HHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC-CC
Q 010961 394 RTMPN--K-SLISWNSMIVG-LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LD 468 (496)
Q Consensus 394 ~~~~~--~-~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~ 468 (496)
+++.+ | +...|...... +...|+.+.|..+|+++.+. .+.+...|..++..+...|+++.|..+|++.++.. ..
T Consensus 158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 99875 2 33344443333 33468999999999999986 35577899999999999999999999999988754 44
Q ss_pred ch--HHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 469 SD--QIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 469 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
|+ ..+|...+..-.+.|+.+.+.++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 43 3578888888888999999988765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=8.2e-08 Score=81.07 Aligned_cols=90 Identities=14% Similarity=-0.004 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC--C-CcchHHHHHHHHHh
Q 010961 208 VLGSSLVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD--T-SSVMWNSMISGYIS 281 (496)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~ 281 (496)
.++..+..+|.+.|++++|...|++..+ | ++.+|..+..++.+.|++++|++.|+++.+ | +..++..+...+..
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 3555666677777777777777776653 2 344555555555555555555555555443 1 23344455555555
Q ss_pred CCCHHHHHHHHHHHHH
Q 010961 282 NNEDTEALLLFHKMRR 297 (496)
Q Consensus 282 ~~~~~~a~~~~~~m~~ 297 (496)
.|++++|+..|+...+
T Consensus 118 ~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHh
Confidence 5555555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=7.6e-09 Score=91.36 Aligned_cols=267 Identities=7% Similarity=-0.067 Sum_probs=181.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcCC--CChH-HHHHHH---HHHH-------hcCChhHHHHHHHhcCC---CCcchHH
Q 010961 210 GSSLVNLYGKCGDFNSANQVLNMMKE--PDDF-CLSALI---SGYA-------NCGKMNDARRVFDRTTD---TSSVMWN 273 (496)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~---~~~~-------~~~~~~~a~~~~~~~~~---~~~~~~~ 273 (496)
...++......+..++|+.+++++.+ |+.. .|+..- .... ..|.+++|+.+++...+ .+...|.
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~ 111 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 111 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 34444444444556899999998874 5533 343322 2222 33447788888887665 3445666
Q ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 274 SMISGYISNN--EDTEALLLFHKMRRNGVLEDASTLA-SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350 (496)
Q Consensus 274 ~l~~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (496)
.+..++...+ ++++|+..+.++.+.. +++...+. .....+...+..+.|...++.+.+.+ +.+...++.+..++.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 6666666655 4789999999888753 33444443 34456667888999999998888765 456777888888899
Q ss_pred hcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHH
Q 010961 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNM 427 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 427 (496)
..|++++|...+.......+.... ....+...+..+.+...+..... ++...+..++..+...|+..+|...+.+.
T Consensus 190 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENVLLKELE-LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHHH-HHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHhHHHHHH-HHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999998887777665533332222 33344556666677666665432 34556667777888889999999999888
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCch-HHHHHHHHHHHH
Q 010961 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD-QIISTSLVDFYC 482 (496)
Q Consensus 428 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 482 (496)
.... +.+...+..+..++...|++++|.+.++.+++. .|+ ...|..|...+.
T Consensus 269 ~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 269 EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp CTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred HhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence 7753 335678888999999999999999999999885 454 456666766655
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=1.6e-08 Score=85.53 Aligned_cols=92 Identities=9% Similarity=-0.127 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 214 (496)
+|..+..+|.+.|++++|++.|++..+ +.| +..+|..+..++...|+++.|...|+++.+..+. +..++..+.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~-----l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg 112 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALA-----IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRG 112 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhc-----cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHH
Confidence 444445555555555555555555554 222 2344444444555555555555555555444322 233344444
Q ss_pred HHHHhcCChhhHHHHHHhc
Q 010961 215 NLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~ 233 (496)
.++...|++++|...|+..
T Consensus 113 ~~~~~~g~~~~A~~~~~~a 131 (259)
T d1xnfa_ 113 IALYYGGRDKLAQDDLLAF 131 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 4444444444444444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.85 E-value=1.1e-08 Score=90.19 Aligned_cols=43 Identities=2% Similarity=-0.228 Sum_probs=18.6
Q ss_pred HHHHhcCChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHH
Q 010961 215 NLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDA 257 (496)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 257 (496)
..+...+.+++|+..++.+.+ .+...|..+...+.+.|++++|
T Consensus 152 ~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 152 VAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp HHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHH
Confidence 334444455555555544443 1233344444444444444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=8.2e-07 Score=76.06 Aligned_cols=119 Identities=7% Similarity=0.021 Sum_probs=50.6
Q ss_pred HHHHHhcCChhhHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChhHHHHHHHhcCC-----CC----cchHHHH
Q 010961 214 VNLYGKCGDFNSANQVLNMMKE-----PD----DFCLSALISGYANCGKMNDARRVFDRTTD-----TS----SVMWNSM 275 (496)
Q Consensus 214 ~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l 275 (496)
...|...|++++|.+.|.+..+ .+ ..+|..+..+|.+.|++++|.+.+++..+ .+ ..++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 3445555555555555554432 11 12344444444444444444444443221 00 1233333
Q ss_pred HHHHHh-CCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 276 ISGYIS-NNEDTEALLLFHKMRR----NGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 276 ~~~~~~-~~~~~~a~~~~~~m~~----~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
...|.. .|++++|+..+++..+ .+.++ -..++..+...+...|++++|...++++..
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 334422 3555555555554432 11111 122334444445555555555555555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=3.6e-06 Score=71.94 Aligned_cols=190 Identities=10% Similarity=-0.046 Sum_probs=100.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCChhHHHHHHhhcCC-----C----CcccHHHH
Q 010961 79 IEGFMKLGHKEKSLQLFNVMPQ-----KN----DFSWNMLISGFAKAGELKTARTLFNDMPR-----R----NAIAWNSM 140 (496)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l 140 (496)
...|...|++++|.+.|++..+ .+ ..+|..+..+|.+.|++++|.+.+++..+ . ...++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 3444444555555554444432 11 23455555666666666666665554432 1 12345555
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHchh-ccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcch------hHHH
Q 010961 141 IHCYVR-NGFAREAVRLFKELNSDLV-ERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS------VLGS 211 (496)
Q Consensus 141 i~~~~~-~~~~~~a~~~~~~~~~~~~-~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 211 (496)
...|.. .|++++|++.+++....-. .+..+ -..++..+...+...|+++.|...++++......... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 556644 4888888888877654210 11111 1234666677777788888888888777664332211 1223
Q ss_pred HHHHHHHhcCChhhHHHHHHhcCCCCh--------HHHHHHHHHHHh--cCChhHHHHHHHhcCCCC
Q 010961 212 SLVNLYGKCGDFNSANQVLNMMKEPDD--------FCLSALISGYAN--CGKMNDARRVFDRTTDTS 268 (496)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~ 268 (496)
..+..+...|+++.|...++...+.++ .....++.++-. .+.+++|+..|+++.+-|
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 344455667788888888877765321 122334444333 223555555555555444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=5e-07 Score=71.83 Aligned_cols=137 Identities=10% Similarity=-0.044 Sum_probs=97.2
Q ss_pred HHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHH
Q 010961 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 422 (496)
...+...|++++|++.|.++.++++.+|..+..+|...|++++|++.|++..+ .+...|..+..+|.+.|++++|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 34456778888888888887777777777888888888888888888887764 355678888888888888888888
Q ss_pred HHHHHHhCCC--------------CCC-HHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 423 LFCNMNKLDL--------------RMD-KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482 (496)
Q Consensus 423 ~~~~m~~~~~--------------~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (496)
.|++.....- +++ ..++..+..++.+.|++++|.+.++...+....|+......-+..+.
T Consensus 92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 8888765310 111 24455667778888888888888888877666655544444344433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=9.5e-07 Score=70.18 Aligned_cols=124 Identities=10% Similarity=-0.019 Sum_probs=62.1
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLF 157 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 157 (496)
.+...|+++.|++.|+++..++..+|..+..++...|++++|++.|++..+ .+..+|..+..++.+.|++++|++.|
T Consensus 14 ~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~ 93 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL 93 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555442 23445555555555666666665555
Q ss_pred HHHHHchhc-----------cCCcC-HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCC
Q 010961 158 KELNSDLVE-----------RLQCD-AFILATVIGACADLAALEYGKQIHSHILVNGLD 204 (496)
Q Consensus 158 ~~~~~~~~~-----------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 204 (496)
++....... ...++ ..++..+..++...|+++.|.+.+....+....
T Consensus 94 ~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 94 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 554331000 00111 133344444555566666666666555544433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.37 E-value=0.00034 Score=59.69 Aligned_cols=130 Identities=9% Similarity=0.028 Sum_probs=55.2
Q ss_pred HHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCCh
Q 010961 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254 (496)
Q Consensus 175 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (496)
...+...|.+.|.++.|..++..+. -|..++..+.+.+++..|.+++.+.. +..+|..+...+.+....
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~ 85 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEF 85 (336)
T ss_dssp ------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHH
Confidence 3334444444555555555444221 23344455555555555555544332 333555555555544443
Q ss_pred hHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010961 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317 (496)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 317 (496)
..+.- .......++.....++..|-..|.+++.+.+++..... -.++...++.++..|++.
T Consensus 86 ~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 86 RLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 33211 11111122333345556666666666666666655432 244555555666666554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.36 E-value=0.00055 Score=58.39 Aligned_cols=130 Identities=10% Similarity=0.135 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHH
Q 010961 45 NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124 (496)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 124 (496)
..++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+...+.+......+.-
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la~i 90 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQM 90 (336)
T ss_dssp -----------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHHHH
Confidence 3455666677777777777765443 6666666777777777777666543 44466666666666555443322
Q ss_pred HHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccc
Q 010961 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186 (496)
Q Consensus 125 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 186 (496)
.......++.....++..|-..|.+++.+.+++..... -.++...++.++..+++.+
T Consensus 91 -~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~----~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 91 -CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL----ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp -TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----TTCCHHHHHHHHHHHHTTC
T ss_pred -HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC----CccchHHHHHHHHHHHHhC
Confidence 11111223334456677777777777777777765441 2345556666666666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=2.6e-06 Score=61.32 Aligned_cols=87 Identities=13% Similarity=0.112 Sum_probs=53.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhh
Q 010961 378 TVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454 (496)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 454 (496)
..+.+.|++++|+..|++..+ .+...|..+..+|...|++++|+..+.+..+.+ +.+...|..+..++...|++++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence 334444555555555555432 244556666666666777777777777666653 4456666666667777777777
Q ss_pred HHHHHHHHHHc
Q 010961 455 GEQVFARVTII 465 (496)
Q Consensus 455 a~~~~~~~~~~ 465 (496)
|...++...+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 77777766653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.28 E-value=1.7e-06 Score=69.48 Aligned_cols=96 Identities=5% Similarity=-0.068 Sum_probs=73.2
Q ss_pred cchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--C-ChhhHHHHH
Q 010961 3 TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMI 79 (496)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~ 79 (496)
|+...+......+...|+++.|...|+..++.. |....+|..+..+|.+.|++++|+..|+...+ | +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 667777777778888888888888888887776 45555777788888888888888888887765 3 456677788
Q ss_pred HHHHhcCCHHHHHHHHhhCCC
Q 010961 80 EGFMKLGHKEKSLQLFNVMPQ 100 (496)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~ 100 (496)
.++.+.|++++|+..|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888877654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.28 E-value=7.5e-05 Score=62.49 Aligned_cols=220 Identities=12% Similarity=0.067 Sum_probs=110.0
Q ss_pred HHHHHHhcCChhHHHHHHHhcCC-CCcchHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhcc
Q 010961 244 LISGYANCGKMNDARRVFDRTTD-TSSVMWNSMISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASV-LSACSSL 317 (496)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-~~~~~~~ 317 (496)
+...+.+.+++++|+++|++..+ .+..++..|...|.. ..++..|...+......+.+.-...+..+ .......
T Consensus 8 lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~ 87 (265)
T d1ouva_ 8 LGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVS 87 (265)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccc
Confidence 33333344444444444443332 123333334444433 34555555555555554421111111000 1111223
Q ss_pred cchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh----cCChhhHHHHHHhcc-cCchhhHHHHHHHHHh----cCCHHH
Q 010961 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----RGMPSDACKLFSELK-VYDTILLNTMITVYSS----CGRIED 388 (496)
Q Consensus 318 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~ 388 (496)
.+.+.|...+....+.|.... ...+...+.. ......+...+.... ..+...+..+...+.. ..+...
T Consensus 88 ~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 164 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKK 164 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCccccccc
Confidence 455556666665555542211 1112222221 223344444444433 3344455555555553 334555
Q ss_pred HHHHHhhCCC-CChhhHHHHHHHHHh----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCchhhHHHHH
Q 010961 389 AKHIFRTMPN-KSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSLELGEQVF 459 (496)
Q Consensus 389 a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~ 459 (496)
+...++...+ .+..+...+...|.. ..++++|..+|++..+.| ++..+..|...|.+ ..+.++|.++|
T Consensus 165 ~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~ 241 (265)
T d1ouva_ 165 ALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENF 241 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred chhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHH
Confidence 5666555544 355666666666654 567888999999988876 34455556665554 34788999999
Q ss_pred HHHHHcCCCc
Q 010961 460 ARVTIIGLDS 469 (496)
Q Consensus 460 ~~~~~~~~~~ 469 (496)
++..+.|..+
T Consensus 242 ~kAa~~g~~~ 251 (265)
T d1ouva_ 242 KKGCKLGAKG 251 (265)
T ss_dssp HHHHHHTCHH
T ss_pred HHHHHCcCHH
Confidence 9998888654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1.7e-05 Score=56.87 Aligned_cols=89 Identities=10% Similarity=-0.070 Sum_probs=55.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355 (496)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (496)
...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...+....+.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 445566666666666666666542 4445556666666666666666666666666654 34555566666666666666
Q ss_pred hhHHHHHHhcc
Q 010961 356 SDACKLFSELK 366 (496)
Q Consensus 356 ~~a~~~~~~~~ 366 (496)
++|+..|++..
T Consensus 88 ~~A~~~~~~a~ 98 (117)
T d1elwa_ 88 EEAKRTYEEGL 98 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666555
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=6.2e-06 Score=63.16 Aligned_cols=89 Identities=15% Similarity=0.024 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCC
Q 010961 342 ASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNG 415 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g 415 (496)
+......|.+.|++++|+..|++.. +.+...|..+..+|...|++++|...|++..+ | +..+|..++.+|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3344555666677777777666655 33444555555566666666666666655543 2 3345555556666666
Q ss_pred ChhhHHHHHHHHHhC
Q 010961 416 SPIEALDLFCNMNKL 430 (496)
Q Consensus 416 ~~~~a~~~~~~m~~~ 430 (496)
++++|...+++....
T Consensus 93 ~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 93 KFRAALRDYETVVKV 107 (159)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 666666666655554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.20 E-value=3.9e-06 Score=67.24 Aligned_cols=96 Identities=8% Similarity=-0.066 Sum_probs=83.5
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC-CHHHHHHHH
Q 010961 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVI 443 (496)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~ 443 (496)
|+...+......|.+.|++++|+..|++..+ .+...|..+..+|.+.|++++|+..+++..+. .| +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHHH
Confidence 5556667778899999999999999998764 46678999999999999999999999999875 55 577899999
Q ss_pred HHHhccCchhhHHHHHHHHHHc
Q 010961 444 SACANISSLELGEQVFARVTII 465 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
.+|...|++++|...++.+.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988763
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.18 E-value=4.5e-06 Score=59.42 Aligned_cols=88 Identities=10% Similarity=-0.073 Sum_probs=65.1
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 406 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
.+...+.+.|++++|...+++..... +-+...|..+..++.+.|++++|...+++..+.... +...+..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence 45666777788888888888877752 335677777788888888888888888877775432 5677777888888888
Q ss_pred ChHHHHHhhh
Q 010961 486 FIKMDEYYLM 495 (496)
Q Consensus 486 ~~~~A~~~~~ 495 (496)
++++|.+.++
T Consensus 99 ~~~~A~~~l~ 108 (112)
T d1hxia_ 99 NANAALASLR 108 (112)
T ss_dssp HHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8888887775
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=2.5e-05 Score=59.60 Aligned_cols=89 Identities=8% Similarity=-0.040 Sum_probs=45.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355 (496)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (496)
...|.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...|..+++.. +.+...+..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 344555555555555555555432 2334444445555555555555555555555543 23334455555555555555
Q ss_pred hhHHHHHHhcc
Q 010961 356 SDACKLFSELK 366 (496)
Q Consensus 356 ~~a~~~~~~~~ 366 (496)
++|...+++..
T Consensus 95 ~eA~~~~~~a~ 105 (159)
T d1a17a_ 95 RAALRDYETVV 105 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.13 E-value=0.00016 Score=60.36 Aligned_cols=226 Identities=12% Similarity=0.015 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh----cCChhhHHHHHHhcCCCChHHHHHHHHH
Q 010961 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK----CGDFNSANQVLNMMKEPDDFCLSALISG 247 (496)
Q Consensus 172 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 247 (496)
+..+..+...+.+.+++++|.+.|++..+.| +...+..|...|.. ..+...+...+....+++
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence 3445555555666677777777777776665 33344445555544 345555555555444322
Q ss_pred HHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhcccchhh
Q 010961 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASV-LSACSSLGFLEH 322 (496)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-~~~~~~~~~~~~ 322 (496)
++.....+...+.. ..+.+.|...++...+.|.......+... ............
T Consensus 69 --------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~ 128 (265)
T d1ouva_ 69 --------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKK 128 (265)
T ss_dssp --------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred --------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHH
Confidence 12222222222221 34455566666665555432221111100 001112333444
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHh----cCChhhHHHHHHhcc-cCchhhHHHHHHHHHh----cCCHHHHHHHH
Q 010961 323 GKQVHGHACKVGVIDDVIVASALLDTYSK----RGMPSDACKLFSELK-VYDTILLNTMITVYSS----CGRIEDAKHIF 393 (496)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 393 (496)
+...+......+ +...+..+...|.. ..+...+...++... ..++.....+...|.. ..+++.|...|
T Consensus 129 a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~ 205 (265)
T d1ouva_ 129 AVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY 205 (265)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhH
Confidence 455555444432 33444555555554 234445555555544 3345555555555544 45788888888
Q ss_pred hhCCC-CChhhHHHHHHHHHh----CCChhhHHHHHHHHHhCCCC
Q 010961 394 RTMPN-KSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLR 433 (496)
Q Consensus 394 ~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 433 (496)
++..+ .++..+..|...|.. ..+.++|.+.|++..+.|..
T Consensus 206 ~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 206 SKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 77665 456677777777765 34788899999998887733
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=3.3e-06 Score=60.98 Aligned_cols=97 Identities=6% Similarity=-0.046 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC---hhhHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 010961 374 NTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGS---PIEALDLFCNMNKLDLRMD-KFSLASVISAC 446 (496)
Q Consensus 374 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~ 446 (496)
..+++.+...+++++|++.|++... .++.++..+..++.+.++ .++|+.+++++...+..|+ ..+|..+..+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4678888899999999999999875 466788888999887655 4569999999887643343 24778889999
Q ss_pred hccCchhhHHHHHHHHHHcCCCchHH
Q 010961 447 ANISSLELGEQVFARVTIIGLDSDQI 472 (496)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~~~~ 472 (496)
.+.|++++|.+.|+.+.+.. |+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~--P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE--PQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHhhhHHHHHHHHHHHHhC--cCCH
Confidence 99999999999999998854 5543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.02 E-value=3e-05 Score=54.95 Aligned_cols=88 Identities=11% Similarity=-0.076 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 010961 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (496)
.+...+.+.|++++|+..|++..+ ..| +...|..+..++.+.|++++|...+++.++..+. +...+..+...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~-----~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y 94 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQ-----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-----cccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHH
Confidence 344555566666666666666655 223 3455555555556666666666666665554433 445555566666
Q ss_pred HhcCChhhHHHHHHh
Q 010961 218 GKCGDFNSANQVLNM 232 (496)
Q Consensus 218 ~~~~~~~~a~~~~~~ 232 (496)
...|++++|.+.+++
T Consensus 95 ~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 95 TNEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 666666666665554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=4.3e-05 Score=54.86 Aligned_cols=92 Identities=12% Similarity=-0.029 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---cchhhHHHHHHHHHHcCCCch-HHHHHHHHHHH
Q 010961 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL---GFLEHGKQVHGHACKVGVIDD-VIVASALLDTY 349 (496)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 349 (496)
.+++.+...+++++|.+.|++....+ +.+..++..+..++.+. ++.++|..+++.+.+.+..|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34555555666666666666665543 44455555555555442 334456666665555433332 23455556666
Q ss_pred HhcCChhhHHHHHHhcc
Q 010961 350 SKRGMPSDACKLFSELK 366 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~ 366 (496)
.+.|++++|++.|+++.
T Consensus 83 ~~~g~~~~A~~~~~~aL 99 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLL 99 (122)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 66666666666666555
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=2.7e-05 Score=56.80 Aligned_cols=89 Identities=9% Similarity=0.022 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCC---Cch---HHHHHHHH
Q 010961 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL---DSD---QIISTSLV 478 (496)
Q Consensus 405 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~---~~~~~~l~ 478 (496)
..+...|...|++++|++.|.+..+.+ +.+...+..+..+|.+.|++++|...++.+++... .+. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345555666666666666666666542 33455566666666666666666666665544211 000 13455555
Q ss_pred HHHHhcCChHHHHHhh
Q 010961 479 DFYCKCGFIKMDEYYL 494 (496)
Q Consensus 479 ~~~~~~g~~~~A~~~~ 494 (496)
..+...|++++|.+.+
T Consensus 87 ~~~~~~~~~~~A~~~~ 102 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFY 102 (128)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHH
Confidence 5566666666666554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=8.5e-05 Score=57.16 Aligned_cols=77 Identities=16% Similarity=0.090 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
+|+.+..+|.+.|++++|+..+++..+.. |.++..|..+..++...|++++|...|+...+..+. ++.+...+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 45555666666666666666666666642 335566666666666666666666666666664321 344444444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.00025 Score=54.47 Aligned_cols=56 Identities=14% Similarity=-0.085 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010961 342 ASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 397 (496)
|+.+..+|.+.|++++|+..++... +.++..+..+..+|...|++++|...|+...
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 123 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 123 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444443 2233444444444555555555555554443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=0.00014 Score=55.89 Aligned_cols=135 Identities=13% Similarity=0.032 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHH
Q 010961 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 421 (496)
+......+...|++.+|+..|.+..... ............ ..+.......|..+..+|.+.|++++|+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~--------~~~~~~~~~~~~----~~~~~~~~~~~~nla~~~~~~~~~~~Ai 97 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--------EGSRAAAEDADG----AKLQPVALSCVLNIGACKLKMSDWQGAV 97 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHHHHHSCHHHH----GGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh--------hhhhhhhhhHHH----HHhChhhHHHHHHHHHHHHhhcccchhh
Confidence 4455666778888888888877653100 000000000000 0001123456777888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHH
Q 010961 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490 (496)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 490 (496)
..+++..+.. +.+...|..+..++.+.|+++.|...|+...+.... +..+...+..+..+.....++
T Consensus 98 ~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 98 DSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 9999998864 457788999999999999999999999999886532 556666666666554444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00025 Score=51.36 Aligned_cols=94 Identities=13% Similarity=0.119 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCC---Cc--h-HHHHHHH
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV---ID--D-VIVASAL 345 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~-~~~~~~l 345 (496)
+..+...+...|++++|+..|.+.++.. +.+...+..+..+|.+.|+++.|...+..+++... .+ . ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3345556666677777777776666642 33455666666666666677766666666654211 00 0 1245555
Q ss_pred HHHHHhcCChhhHHHHHHhcc
Q 010961 346 LDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~ 366 (496)
...+...+++++|++.|....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 566666666666666665543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.66 E-value=0.00025 Score=54.40 Aligned_cols=124 Identities=9% Similarity=-0.075 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCC
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (496)
.+......+...|+++.|...|.++++.. ..........+ ...+.+.....+..+..++.+.|+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~----~~~~~~~~~~~~~nla~~~~~~~~ 92 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDAD----GAKLQPVALSCVLNIGACKLKMSD 92 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHH----HGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHH----HHHhChhhHHHHHHHHHHHHhhcc
Confidence 34455666778899999999888776421 00000001000 111223445567778888889999
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010961 386 IEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446 (496)
Q Consensus 386 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 446 (496)
+++|+..++++.+ .+..+|..+..+|...|++++|+..|++..+.. +.+......+..+.
T Consensus 93 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 93 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 9999998888765 356789999999999999999999999999862 33555555544433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=2.4e-05 Score=72.16 Aligned_cols=217 Identities=10% Similarity=-0.038 Sum_probs=104.3
Q ss_pred HHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010961 90 KSLQLFNVMPQ--KN-DFSWNMLISGFAKAGELKTARTLFNDMPRRNAI---AWNSMIHCYVRNGFAREAVRLFKELNSD 163 (496)
Q Consensus 90 ~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~ 163 (496)
+|.+.|++..+ || ...+..+..++...|++++| ++++...|.. .++.. ...-...+..+++.++...+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e--~~Lw~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVE--QDLWNHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHH--HHHHHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHH--HHHHHHHHHHHHHHHHHhccc
Confidence 45566666553 32 33444455556666666655 4443322211 11111 111111234556666655542
Q ss_pred hhccCCcCHHHHHHHHH--HHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCh-HH
Q 010961 164 LVERLQCDAFILATVIG--ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD-FC 240 (496)
Q Consensus 164 ~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~ 240 (496)
...++.......+. .....+.++.+...+....+.. +++...+..+...+.+.|+.+.|...+....+++. ..
T Consensus 79 ---~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 154 (497)
T d1ya0a1 79 ---RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC 154 (497)
T ss_dssp ---SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHHHH
T ss_pred ---ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHH
Confidence 22233222222221 1223445555555444443322 22445566777777788888888776665554432 45
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010961 241 LSALISGYANCGKMNDARRVFDRTTD--T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316 (496)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 316 (496)
+..+...+...|++++|...|++..+ | +..+|+.+...+...|+..+|+..|.+..... +|-...+..|...+.+
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 66677788888888888888887664 3 45688888888888888888888888887764 5667777777766543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=0.00028 Score=54.49 Aligned_cols=73 Identities=10% Similarity=0.058 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH-----HcCCCchHHHHH
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-----IIGLDSDQIIST 475 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~ 475 (496)
..+..+...+...|++++|+..++++.+.. +-+...|..++.++.+.|+.++|.+.|+.+. +.|+.|+..+-.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 456677778888888888888888887752 4467778888888888888888888888663 468888775533
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=1.4e-05 Score=73.80 Aligned_cols=164 Identities=14% Similarity=0.075 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHH
Q 010961 285 DTEALLLFHKMRRNGVLEDASTLASVLSAC--SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362 (496)
Q Consensus 285 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 362 (496)
+..+++.++...+....++..-....+..+ ...+.++.+...+....+.. +++...+..+...+.+.|+.++|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 445666666666544334333222222221 12334444444333332221 234555667777778888888888777
Q ss_pred HhcccCch-hhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHH
Q 010961 363 SELKVYDT-ILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438 (496)
Q Consensus 363 ~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 438 (496)
.....+++ .++..+...+...|++++|...|++..+ | +..+|+.|...+...|+..+|+..|.+..... +|-...
T Consensus 144 ~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a 222 (497)
T d1ya0a1 144 SSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAA 222 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHH
Confidence 76554332 4566778888888888888888888764 4 45688888888888888888888888888764 666777
Q ss_pred HHHHHHHHhccC
Q 010961 439 LASVISACANIS 450 (496)
Q Consensus 439 ~~~l~~~~~~~g 450 (496)
+..|...+.+..
T Consensus 223 ~~nL~~~~~~~~ 234 (497)
T d1ya0a1 223 STNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 777777665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.61 E-value=0.00016 Score=54.37 Aligned_cols=77 Identities=14% Similarity=0.049 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (496)
.+|..+..+|.+.|++++|++.+++..+.. |.+..+|..+..++...|++++|...|+...+..+. +..+...+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 467778899999999999999999998864 557889999999999999999999999999886532 44455444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.61 E-value=0.0014 Score=49.85 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
.|+.+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...|+.+.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34445555666666666666666665542 335555666666666666666666666666553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.57 E-value=0.00091 Score=50.09 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=16.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRR 297 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 297 (496)
+......+.+.|++.+|+..|.+...
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~ 45 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALD 45 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445566666777777776666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.44 E-value=0.0005 Score=53.01 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=47.2
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHH-----cCCCcchhH
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV-----NGLDFDSVL 209 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 209 (496)
..+..+...+.+.|++++|+..++++.+. .+-+...|..++.++...|+..+|.+.|+++.+ .|+.|+..+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~----~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFE----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 45566677777777777777777777662 223556677777777777777777777776533 577776544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.42 E-value=0.00063 Score=51.97 Aligned_cols=58 Identities=12% Similarity=-0.036 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 105 SWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
.|..+..+|.+.|++++|+..++...+ .+..+|..+..++...|++++|...|++...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666667777777776666553 2455666667777777777777777777766
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.20 E-value=0.00057 Score=50.63 Aligned_cols=121 Identities=12% Similarity=-0.062 Sum_probs=59.2
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhh
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (496)
+.+.+++|...++...+.. +.++.++..+..++...+++..+.+-. +.+++|+..|++
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~---------------------~~~~~Ai~~~~k 66 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK---------------------QMIQEAITKFEE 66 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH---------------------HHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHH---------------------HHHHHHHHHHHH
Confidence 4455666666666666654 444555555555555443332222111 112233333333
Q ss_pred CCC---CChhhHHHHHHHHHhCC-----------ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 396 MPN---KSLISWNSMIVGLSQNG-----------SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 396 ~~~---~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
..+ .+..+|..+..+|...| .+++|.+.|++..+. .|+...|..-+..+ .+|.+++.+
T Consensus 67 Al~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e 138 (145)
T d1zu2a1 67 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAE 138 (145)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHH
T ss_pred HHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHH
Confidence 321 23334444444444332 356677777777764 66665555444333 455566666
Q ss_pred HHHcC
Q 010961 462 VTIIG 466 (496)
Q Consensus 462 ~~~~~ 466 (496)
..+.|
T Consensus 139 ~~k~~ 143 (145)
T d1zu2a1 139 AYKQG 143 (145)
T ss_dssp HHHSS
T ss_pred HHHHh
Confidence 55554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.05 E-value=0.00089 Score=55.19 Aligned_cols=114 Identities=12% Similarity=-0.030 Sum_probs=51.4
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc---CchhhHHHHHHHHHhcCCHHHHHHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV---YDTILLNTMITVYSSCGRIEDAKHI 392 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 392 (496)
+.|++++|...+.+.++.. +.+...+..+...++..|++++|.+.++.... .+...+..+...+...+..+++..-
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~ 86 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG 86 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence 3455555555555555443 33444555555555555555555555555441 1122222222222222222222211
Q ss_pred HhhC--C-CC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 393 FRTM--P-NK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 393 ~~~~--~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
.... . .| +...+......+...|+.++|.+.++++.+.
T Consensus 87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 1110 0 11 1223333445566677777777777776664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.01 E-value=0.00033 Score=51.97 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 150 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
+++|.+.|++... +.|+...+...+..+ ..+.+++.++.+.|
T Consensus 102 ~~~A~~~~~kal~-----l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 102 FDLATQFFQQAVD-----EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHHHHH-----HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHhhhhhhcccc-----cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 5677777777776 667766665555444 34445555555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.99 E-value=0.0014 Score=53.92 Aligned_cols=117 Identities=15% Similarity=0.019 Sum_probs=66.2
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhH
Q 010961 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358 (496)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 358 (496)
..+.|++++|+..+++..+.. +-|...+..+...++..|++++|...++...+.. +.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 345677777777777777653 4566677777777777777777777777777653 22333344444444333333333
Q ss_pred HHHHHhcc---cC-chhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010961 359 CKLFSELK---VY-DTILLNTMITVYSSCGRIEDAKHIFRTMP 397 (496)
Q Consensus 359 ~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 397 (496)
..-..... +| +...+......+...|+.++|...++++.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~ 126 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 22222111 11 22233344555667788888877776654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.90 E-value=0.026 Score=38.79 Aligned_cols=135 Identities=15% Similarity=0.045 Sum_probs=87.9
Q ss_pred ccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC-CCh---HHHHHHHHHHHhcCChhHHHH
Q 010961 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDD---FCLSALISGYANCGKMNDARR 259 (496)
Q Consensus 184 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~---~~~~~l~~~~~~~~~~~~a~~ 259 (496)
..|..++..+++.+..++. +..-||-++.-....-+-+....+++.+-+ -|. .-...++.++...+..
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~----- 85 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTL----- 85 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCC-----
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcch-----
Confidence 3456666666666665543 344455555555555555555566655543 110 1123344444444432
Q ss_pred HHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC
Q 010961 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336 (496)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 336 (496)
....+..+.....+|+-+.-.++++.+.+.+ +|++.....+..+|.+.|...++..++.++.+.|.+
T Consensus 86 ---------se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 86 ---------NEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ---------CHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ---------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 4456667788889999999999999877754 788888888899999999999999999999988864
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.86 E-value=0.0037 Score=46.73 Aligned_cols=88 Identities=14% Similarity=-0.079 Sum_probs=53.5
Q ss_pred HHHHHhCCChhhHHHHHHHHHhC--CCCC---------CHHHHHHHHHHHhccCchhhHHHHHHHHHHc-----CCCc--
Q 010961 408 IVGLSQNGSPIEALDLFCNMNKL--DLRM---------DKFSLASVISACANISSLELGEQVFARVTII-----GLDS-- 469 (496)
Q Consensus 408 ~~~~~~~g~~~~a~~~~~~m~~~--~~~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-- 469 (496)
...+...|++++|++.|++..+. ..+. ....|+.+..+|...|++++|...++...+. ...+
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455567777777777766542 1110 1245667777777777777777777765532 1111
Q ss_pred ---hHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 470 ---DQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 470 ---~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
....+..+..+|.+.|++++|.+.++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~ 124 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFK 124 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 12345667788888888888887765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.60 E-value=0.0072 Score=45.08 Aligned_cols=96 Identities=16% Similarity=-0.028 Sum_probs=46.0
Q ss_pred cHHHH--HHHHHHcCCHHHHHHHHHHHHHchhccCCcC----------HHHHHHHHHHHHccchHHHHHHHHHHHHHcC-
Q 010961 136 AWNSM--IHCYVRNGFAREAVRLFKELNSDLVERLQCD----------AFILATVIGACADLAALEYGKQIHSHILVNG- 202 (496)
Q Consensus 136 ~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 202 (496)
+|..+ ...+.+.|++++|++.|++..+. ....|+ ...|+.+..++...|+++.|...+++.++..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i--~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 34444 34455667777777777776652 111111 2344445555555555555555555544311
Q ss_pred ----CCc-----chhHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 203 ----LDF-----DSVLGSSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 203 ----~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
..+ ....++.+..+|...|++++|...|++.
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A 126 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000 0113344455555555555555555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.022 Score=37.98 Aligned_cols=61 Identities=7% Similarity=-0.121 Sum_probs=41.5
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 406 SMIVGLSQNGSPIEALDLFCNMNKL-----DLRMD-KFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 406 ~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
.++..+.+.|++++|...|++..+. ...++ ..++..+..++.+.|++++|...++++.+..
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 4666777777777777777766542 11122 4567777778888888888888888777754
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.022 Score=37.94 Aligned_cols=63 Identities=11% Similarity=-0.022 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHchhcc--CCcC-HHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 010961 139 SMIHCYVRNGFAREAVRLFKELNSDLVER--LQCD-AFILATVIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
.+...+.+.|++++|+..|++..+..... ..++ ..++..+..++.+.|++++|...++++++.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34444445555555555554443321000 0111 233444444444444444444444444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.94 E-value=0.13 Score=35.23 Aligned_cols=139 Identities=9% Similarity=0.018 Sum_probs=85.0
Q ss_pred hcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc-CchhhHHHHHHHHHhcCCHHHHHHHH
Q 010961 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIEDAKHIF 393 (496)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 393 (496)
.-.|..++..+++.+...+. +..-||.++--....-+-+-..+.++.+-. -|. ...++.......+
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl----------s~C~Nlk~vv~C~ 79 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECG 79 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCc----------hhhhcHHHHHHHH
Confidence 34566777777776666542 334455555444444555555555554431 111 1122333333333
Q ss_pred hhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCC
Q 010961 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468 (496)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 468 (496)
-.+- .+...++..++...++|+-+.-.++++.+.+.+ +|++.....+..+|.+.|+..++..++.+.-+.|++
T Consensus 80 ~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 80 VINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 2322 233445566777888888888888888876654 788888888888999999999998888888888764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.31 E-value=0.27 Score=34.77 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=25.9
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCchhhHHHHHHHHHHcCC
Q 010961 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSLELGEQVFARVTIIGL 467 (496)
Q Consensus 415 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 467 (496)
.+.++|.++|++..+.| ++.....|...|.. ..|.++|.++++...+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 34556666666666654 22222333333332 3466666677766666654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=1.7 Score=38.08 Aligned_cols=406 Identities=11% Similarity=0.022 Sum_probs=226.4
Q ss_pred HHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHH--hcCCHHHHHHHHhhCCC-CCh-hhHHHHHHHHHhcCChhHH
Q 010961 47 LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM--KLGHKEKSLQLFNVMPQ-KND-FSWNMLISGFAKAGELKTA 122 (496)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~a 122 (496)
.+....+.|+...+.++...+..--...|-..-..-. .....++...++++-.. |-. ..-...+..+.+.++++..
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~ 91 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHH
Confidence 3444557788888888877775311223322222211 23456666666666443 211 1123345567778888877
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 123 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
...+..-+ .+...-.....+....|+.++|...+..+-.. ....|+ .+..++..+.+.|
T Consensus 92 ~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~--~~~~p~------------------~c~~l~~~~~~~~ 150 (450)
T d1qsaa1 92 LAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT--GKSQPN------------------ACDKLFSVWRASG 150 (450)
T ss_dssp HHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC--SSCCCT------------------HHHHHHHHHHHTT
T ss_pred HHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCch------------------HHHHHHHHHHhcC
Confidence 76554322 24444556778888889999998888777664 223343 2334455455544
Q ss_pred CCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHh-
Q 010961 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS- 281 (496)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~- 281 (496)
.. +...+-.-+......|++..|..+...+...........+...... ..+....... ..+......+..++.+
T Consensus 151 ~l-t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p---~~~~~~~~~~-~~~~~~~~~~~~~l~rl 225 (450)
T d1qsaa1 151 KQ-DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASV 225 (450)
T ss_dssp CS-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh---HhHHHHHhcC-CCChhhhHHHHHHHHHH
Confidence 33 4444445666667778899999888877755545555555554332 2333332222 2222222233333322
Q ss_pred -CCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 010961 282 -NNEDTEALLLFHKMRRNGVLEDASTLA----SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356 (496)
Q Consensus 282 -~~~~~~a~~~~~~m~~~g~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (496)
..+.+.+..++......... +..... .+.......+..+.+...+......+. +.......+......+++.
T Consensus 226 a~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~ 302 (450)
T d1qsaa1 226 ARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRR 302 (450)
T ss_dssp HHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHH
T ss_pred hccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChH
Confidence 35778888888887654322 222222 122233445667777777777666543 3333344555566778899
Q ss_pred hHHHHHHhcccC---chhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCC
Q 010961 357 DACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433 (496)
Q Consensus 357 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 433 (496)
.+...+..+... .+.-.--+..++...|+.+.|...|..+.... ..|..|...-. |..-. +.....+
T Consensus 303 ~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~-~fYG~LAa~~L--g~~~~-------~~~~~~~ 372 (450)
T d1qsaa1 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR-GFYPMVAAQRI--GEEYE-------LKIDKAP 372 (450)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SHHHHHHHHHT--TCCCC-------CCCCCCC
T ss_pred HHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCC-ChHHHHHHHHc--CCCCC-------CCcCCCC
Confidence 999888887621 22333456778888999999999998876542 23443332221 21100 0000000
Q ss_pred --CCH-H---HHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 434 --MDK-F---SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 434 --p~~-~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
+.. . .-..-+..+...|....|...+..+... . +......+.....+.|.++.|+...
T Consensus 373 ~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~~la~lA~~~g~~~~aI~a~ 436 (450)
T d1qsaa1 373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (450)
T ss_dssp SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-C--CHHHHHHHHHHHHHCCChhHHHHHH
Confidence 000 0 0112344566789999999988877643 2 3445556778888899888887653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.77 E-value=0.7 Score=32.46 Aligned_cols=45 Identities=9% Similarity=-0.019 Sum_probs=23.6
Q ss_pred HHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChhhHHHHHHHHHhCC
Q 010961 387 EDAKHIFRTMPN-KSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLD 431 (496)
Q Consensus 387 ~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 431 (496)
++|.++|++..+ .++.....|...|.. ..+..+|.++|++..+.|
T Consensus 76 ~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 76 RKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 333344333332 233444445444443 346777777777777766
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.70 E-value=2.9 Score=36.54 Aligned_cols=321 Identities=10% Similarity=0.002 Sum_probs=188.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-CChhhHHHHHHHHH--hcCChhHHHHHHhhcCCC--CcccHHHHHHHHHHcCCHHH
Q 010961 78 MIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFA--KAGELKTARTLFNDMPRR--NAIAWNSMIHCYVRNGFARE 152 (496)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~ 152 (496)
.+.-..+.|+...+.++...+.. | ...|-..-..-. .....++...++++-+.. ....-...+..+.+.+++..
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~dyp-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~ 90 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKDYP-LYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTTST-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhcCCC-CHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHH
Confidence 34445678999999999999865 3 344443333222 234566677777665532 11123344667788888877
Q ss_pred HHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (496)
.+..+. ..+++...-.....+....|+...+......+-..|.. .+..+..+...+...|.
T Consensus 91 ~~~~~~--------~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~~---------- 151 (450)
T d1qsaa1 91 LLAFSP--------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGK---------- 151 (450)
T ss_dssp HHHHCC--------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTC----------
T ss_pred HHHhcc--------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCC----------
Confidence 665431 23344555556667777888888888777766655533 33344455555444443
Q ss_pred cCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010961 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312 (496)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 312 (496)
.+...+-.-+......|+...|..+...+...........+...... ..+.... .. ..++......+..
T Consensus 152 ---lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p---~~~~~~~---~~--~~~~~~~~~~~~~ 220 (450)
T d1qsaa1 152 ---QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFA---RT--TGATDFTRQMAAV 220 (450)
T ss_dssp ---SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHH---HH--SCCCHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh---HhHHHHH---hc--CCCChhhhHHHHH
Confidence 33334444555666778888888888776654444444454444322 2222221 11 1233333333334
Q ss_pred HHhc--ccchhhHHHHHHHHHHcCCCchHHHH---HHHHHHHHhcCChhhHHHHHHhcc--cCchhhHHHHHHHHHhcCC
Q 010961 313 ACSS--LGFLEHGKQVHGHACKVGVIDDVIVA---SALLDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGR 385 (496)
Q Consensus 313 ~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 385 (496)
++.+ ..+.+.+...+............... ..+...+...+..+.+...+.... ..+.......+......++
T Consensus 221 ~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~ 300 (450)
T d1qsaa1 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGD 300 (450)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCC
Confidence 4333 35777888888887665422222211 112222233466677777776555 3344444555666677899
Q ss_pred HHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 386 IEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 386 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
...+...+..+... ...-.--+.+++...|+.+.|...|.....
T Consensus 301 ~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 99999999999752 122334577889999999999999999874
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.48 E-value=1.2 Score=30.57 Aligned_cols=71 Identities=8% Similarity=0.123 Sum_probs=50.5
Q ss_pred CChhhHHHHHHHHHhCC---ChhhHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHH
Q 010961 399 KSLISWNSMIVGLSQNG---SPIEALDLFCNMNKLDLRMDK-FSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 472 (496)
+++.+--...+++.+.. +.++++.++++....+ +.+. ..+-.|.-+|.+.|++++|.+.++.+.+. .|+-.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence 44455556677777654 4567889998888652 3343 46677788899999999999999999884 45543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.48 E-value=1.3 Score=30.30 Aligned_cols=67 Identities=7% Similarity=-0.115 Sum_probs=46.7
Q ss_pred CchhhHHHHHHHHHhcC---CHHHHHHHHhhCCC--CC--hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH
Q 010961 368 YDTILLNTMITVYSSCG---RIEDAKHIFRTMPN--KS--LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436 (496)
Q Consensus 368 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 436 (496)
+.+.+--....++.+.. +.++++.+|+++.+ |. ...+-.|.-+|.+.|++++|.+.++.+.+. .|+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCc
Confidence 34445566677777654 45678888887764 32 235566778888999999999999998885 6654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.34 E-value=2.1 Score=27.59 Aligned_cols=62 Identities=8% Similarity=0.067 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346 (496)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (496)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|..+++.+.... .++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 445566666666667777777777777777777777777777777766542 12233444444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.43 E-value=2.1 Score=27.62 Aligned_cols=61 Identities=8% Similarity=-0.014 Sum_probs=42.1
Q ss_pred chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHH
Q 010961 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITV 379 (496)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~ 379 (496)
+.-++.+-++.+......|++.+..+-+++|.+.+++.-|..+|+.++ ..+...|..+++-
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilqe 84 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 84 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 444556666666666777888888888888888888888888887776 3345566665543
|