Citrus Sinensis ID: 011012

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
MAMDFDDFLHLDFSGYSSTTTTTTTGDDYACNWNDWSPVVDWEALSGGQDDFHDLIESMMDDSGLNPNARVANIAHEPCNSVSTETSSSSMAVDEETNGEDFKGLRLVHLLMAAAEALTGVNKSRELAQVILIRLKELVSPNDGSNMERLAAYFTDALQGLLEGAGGVHGNNKHYTSNGPHHRDDHHHTDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLARIYRTCGEEEVYSWGDWLGVVGFKPVNISFANHCQAKLLLGLFNDGYRVEELANNRLVLGWKSRRLLSASVWTSSFDSNL
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHcccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHcccccccEEEEEcccEEEEEEcccEEEEEEEccccccccc
cccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHHcHccccccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHcccccccEEEEEHHHHHHHHccccccHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEccccEEEEcccccEEEEEEcccccccccc
mamdfddflhldfsgysstttttttgddyacnwndwspvvdwealsggqddFHDLIESmmddsglnpnarvaniahepcnsvstetssssmavdeetngedfkgLRLVHLLMAAAEALTGVNKSRELAQVILIRLKelvspndgsnmERLAAYFTDALQGLLegaggvhgnnkhytsngphhrddhhHTDVLAAFQLLqdmspyvkfghfTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSrkdgppaphlritalsrggsgrrsiSTVQETGRRLVAFAAsigqpfsfhqcrldsdeTFKASALKLVRGEALIINCMlhlphfsyrapdsiasflsgaktlnprlvtlveeetgpigdggfvSRFMDSLHHYSAVYdsleagfpMQSRARALVERVFLGPRISGSLARIYRTcgeeevyswgdwlgvvgfkpvnisFANHCQAKLLLGLFNDGYRVEELANNRLVLGWKSRRLLSASVWTSSFDSNL
MAMDFDDFLHLDFSGYSSTTTTTTTGDDYACNWNDWSPVVDWEALSGGQDDFHDLIESMMDDSGLNPNARVANIAHEPCNSvstetssssmavdEETNGEDFKGLRLVHLLMAAAEALTGVNKSRELAQVILIRLkelvspndgsNMERLAAYFTDALQGLLEGAGGVHGNNKHYTSNGPHHRDDHHHTDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRitalsrggsgrrsISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERvflgprisgsLARIYRTCGEEEVYSWGDWLGVVGFKPVNISFANHCQAKLLLGLFNDGYRVEELANnrlvlgwksrrllsasvwtssfdsnl
MAMDFDDFLHLDFSGYSStttttttGDDYACNWNDWSPVVDWEALSGGQDDFHDLIESMMDDSGLNPNARVANIAHEPCNsvstetssssMAVDEETNGEDFKGLRLVHLLMAAAEALTGVNKSRELAQVILIRLKELVSPNDGSNMERLAAYFTDALQGLLEGAGGVHGNNKHYTSNGPHHRDDHHHTDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALsrggsgrrsISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLARIYRTCGEEEVYSWGDWLGVVGFKPVNISFANHCQAKLLLGLFNDGYRVEELANNRLVLGWKSRRLLSASVWTSSFDSNL
****************************YACNWNDWSPVVDWEALSGGQDDFHDLI*********************************************FKGLRLVHLLMAAAEALTGVNKSRELAQVILIRLKELVSPNDGSNMERLAAYFTDALQGLLEGAGGVHGN***************HHTDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALV*******************************TGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLARIYRTCGEEEVYSWGDWLGVVGFKPVNISFANHCQAKLLLGLFNDGYRVEELANNRLVLGWKSRRLLSASVWT*******
****FDDFLHLDFS**********************************************************************************************HLLMAAAEALTGVNKSRELAQVILIRLKELVSPNDGSNMERLAAYFTDALQGLLEGAGGVHGNNKH*************HTDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLARIYRTCGEEEVYSWGDWLGVVGFKPVNISFANHCQAKLLLGLFNDGYRVEELANNRLVLGWKSRRLLSASVWTSSF****
MAMDFDDFLHLDFSGYSSTTTTTTTGDDYACNWNDWSPVVDWEALSGGQDDFHDLIESMMDDSGLNPNARVANIAHEPCN******************GEDFKGLRLVHLLMAAAEALTGVNKSRELAQVILIRLKELVSPNDGSNMERLAAYFTDALQGLLEGAGGVHGNNKHYTSNGPHHRDDHHHTDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALS************QETGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLARIYRTCGEEEVYSWGDWLGVVGFKPVNISFANHCQAKLLLGLFNDGYRVEELANNRLVLGWKSRRLLSASVWTSSFDSNL
*****DDFLHLDF**************************VDWEALSGGQDDFHDLIES*******************************************FKGLRLVHLLMAAAEALTGVNKSRELAQVILIRLKELVSPNDGSNMERLAAYFTDALQGLLEGAGGVHGNNKHYTSNGPHHRDDHHHTDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLARIYRTCGEEEVYSWGDWLGVVGFKPVNISFANHCQAKLLLGLFNDGYRVEELANNRLVLGWKSRRLLSASVWTSS*****
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MAMDFDDFLHLDFSGYSSTTTTTTTGDDYACNWNDWSPVVDWEALSGGQDDFHDLIESMMDDSGLNPNARVANIAHEPCNSVSTETSSSSMAVDEETNGEDFKGLRLVHLLMAAAEALTGVNKSRELAQVILIRLKELVSPNDGSNMERLAAYFTDALQGLLEGAGGVHGNNKHYTSNGPHHRDDHHHTDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLARIYRTCGEEEVYSWGDWLGVVGFKPVNISFANHCQAKLLLGLFNDGYRVEELANNRLVLGWKSRRLLSASVWTSSFDSNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query495 2.2.26 [Sep-21-2011]
Q5NE24508 Nodulation-signaling path N/A no 0.979 0.954 0.668 0.0
Q9SUF5483 Scarecrow-like protein 26 yes no 0.947 0.971 0.556 1e-147
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.747 0.627 0.347 6e-51
Q9LF53523 DELLA protein RGL3 OS=Ara no no 0.751 0.711 0.352 4e-50
Q9AVK4819 Protein SCARECROW OS=Pisu N/A no 0.719 0.434 0.351 1e-49
Q9SLH3587 DELLA protein RGA OS=Arab no no 0.743 0.626 0.346 2e-49
Q9M384653 Protein SCARECROW OS=Arab no no 0.773 0.586 0.359 3e-49
Q5BN22579 DELLA protein RGA2 OS=Bra N/A no 0.749 0.640 0.339 5e-49
Q8GXW1547 DELLA protein RGL2 OS=Ara no no 0.747 0.676 0.338 4e-48
Q2RB59651 Protein SCARECROW 1 OS=Or no no 0.672 0.511 0.371 2e-47
>sp|Q5NE24|NSP2_MEDTR Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1 Back     alignment and function desciption
 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/513 (66%), Positives = 408/513 (79%), Gaps = 28/513 (5%)

Query: 3   MDFDDFLHLDFSGYSSTTTTTTTGDDYACNWNDWSPVVDWEALSGGQDDFHDLIESMMDD 62
           MD D    L FSG+SS T T T+ +DY C WN WSP+V+W+  +G  DDFH L++++++D
Sbjct: 4   MDMDAINDLHFSGHSSLTNTPTSDEDYGCTWNHWSPIVNWDTFTGAPDDFHHLMDTIIED 63

Query: 63  -----SGLNPN----ARVANIAHEPCNSVSTETSSSSMAVDEETNGEDFKGLRLVHLLMA 113
                  L+P+            E    + T T++++ A+     G+D KGL+LVHLLMA
Sbjct: 64  RTTVLEQLSPSITTTTTTTTTTDEEEEEMETTTTTTTTAIKTHEVGDDSKGLKLVHLLMA 123

Query: 114 AAEALTGVNKSRELAQVILIRLKELVSPN-DGSNMERLAAYFTDALQGLLEGAGGVHGNN 172
            AEALTG  K+R+LA+VILIRLKELVS + +GSNMERLAA+FT+AL GLLEGAGG H N+
Sbjct: 124 GAEALTGSTKNRDLARVILIRLKELVSQHANGSNMERLAAHFTEALHGLLEGAGGAHNNH 183

Query: 173 ------KHY-TSNGPHHRDDHHHTDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRR 225
                 KHY T+NGPH   +    D LAAFQLLQDMSPYVKFGHFTANQAI+EAVA++RR
Sbjct: 184 HHHNNNKHYLTTNGPHDNQN----DTLAAFQLLQDMSPYVKFGHFTANQAIIEAVAHERR 239

Query: 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVA 285
           VH++DYDIMEG+QWASL+Q+L S  +GP   HLRITALSR G+GRRSI+TVQETGRRL +
Sbjct: 240 VHVIDYDIMEGVQWASLIQSLASNNNGP---HLRITALSRTGTGRRSIATVQETGRRLTS 296

Query: 286 FAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSG 345
           FAAS+GQPFSFH CRLDSDETF+ SALKLVRGEAL+ NCML+LPH SYRAP+S+ASFL+G
Sbjct: 297 FAASLGQPFSFHHCRLDSDETFRPSALKLVRGEALVFNCMLNLPHLSYRAPESVASFLNG 356

Query: 346 AKTLNPRLVTLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERVF 405
           AKTLNP+LVTLVEEE G +  GGFV RFMDSLHHYSAV+DSLEAGFPMQ+RAR LVERVF
Sbjct: 357 AKTLNPKLVTLVEEEVGSV-IGGFVERFMDSLHHYSAVFDSLEAGFPMQNRARTLVERVF 415

Query: 406 LGPRISGSLARIYRTCGEEEVYSWGDWLGVVGFKPVNISFANHCQAKLLLGLFNDGYRVE 465
            GPRI+GSL RIYRT GEEE  SWG+WLG VGF+ V +SFANHCQAKLLLGLFNDGYRVE
Sbjct: 416 FGPRIAGSLGRIYRTGGEEERRSWGEWLGEVGFRGVPVSFANHCQAKLLLGLFNDGYRVE 475

Query: 466 E--LANNRLVLGWKSRRLLSASVWT-SSFDSNL 495
           E  + +N+LVL WKSRRLLSAS+WT SS DS+L
Sbjct: 476 EVGVGSNKLVLDWKSRRLLSASLWTCSSSDSDL 508
Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK).
Medicago truncatula (taxid: 3880)
>sp|Q9SUF5|SCL26_ARATH Scarecrow-like protein 26 OS=Arabidopsis thaliana GN=SCL26 PE=2 SV=1 Back     alignment and function description
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LF53|RGL3_ARATH DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1 Back     alignment and function description
>sp|Q9AVK4|SCR_PEA Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1 Back     alignment and function description
>sp|Q9SLH3|RGA_ARATH DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1 Back     alignment and function description
>sp|Q9M384|SCR_ARATH Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1 Back     alignment and function description
>sp|Q5BN22|RGA2_BRACM DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1 Back     alignment and function description
>sp|Q8GXW1|RGL2_ARATH DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2 Back     alignment and function description
>sp|Q2RB59|SCR1_ORYSJ Protein SCARECROW 1 OS=Oryza sativa subsp. japonica GN=SCR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query495
224082258503 GRAS family transcription factor [Populu 0.931 0.916 0.8 0.0
255545442491 Nodulation signaling pathway 2 protein, 0.967 0.975 0.787 0.0
224066859507 GRAS family transcription factor [Populu 0.983 0.960 0.766 0.0
359492404490 PREDICTED: nodulation-signaling pathway 0.971 0.981 0.796 0.0
147860687490 hypothetical protein VITISV_030382 [Viti 0.971 0.981 0.794 0.0
302141844482 unnamed protein product [Vitis vinifera] 0.943 0.968 0.798 0.0
356507664502 PREDICTED: nodulation-signaling pathway 0.973 0.960 0.711 0.0
206581348505 GRAS family protein [Pisum sativum] 0.983 0.964 0.684 0.0
56691734503 GRAS family protein [Pisum sativum] 0.983 0.968 0.687 0.0
206581346503 GRAS family protein [Pisum sativum] 0.983 0.968 0.685 0.0
>gi|224082258|ref|XP_002306621.1| GRAS family transcription factor [Populus trichocarpa] gi|222856070|gb|EEE93617.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/480 (80%), Positives = 424/480 (88%), Gaps = 19/480 (3%)

Query: 27  DDYACNWNDWSPVVDWEALSGGQDDFHDLIESMMDDSGL-NPNARVANIAHEPCNSVSTE 85
           +D+ CNWNDWSP+VDWEALSG QDDF DLI+SMMDD  L N + R   +  +  NS+ST 
Sbjct: 32  NDHGCNWNDWSPMVDWEALSGAQDDFQDLIDSMMDDGALMNQSIR---LTPDTSNSMST- 87

Query: 86  TSSSSMAVDEETN-GEDFKGLRLVHLLMAAAEALTGVNKSRELAQVILIRLKELVSPNDG 144
             S +M VDEET+  +D KGLRLVHLLMAAAEALTG+NK+R+LA+VIL+RLKELVSPNDG
Sbjct: 88  --SDTMLVDEETSCSDDLKGLRLVHLLMAAAEALTGLNKNRDLARVILVRLKELVSPNDG 145

Query: 145 SNMERLAAYFTDALQGLLEGAGGVHGNNKHY--TSNGP---HHRDD----HHHTDVLAAF 195
           +NMERLAAYFTDALQGLLEG+G +H +NKH   T+NGP   HHRDD    HH +DVLAAF
Sbjct: 146 TNMERLAAYFTDALQGLLEGSGSIH-SNKHLSGTNNGPYHHHHRDDPQHHHHQSDVLAAF 204

Query: 196 QLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPA 255
           QLLQDMSPYVKFGHFTANQAILEAVA+DRR+HIVDYDIMEGIQWASLMQALVSRKDGPP 
Sbjct: 205 QLLQDMSPYVKFGHFTANQAILEAVADDRRIHIVDYDIMEGIQWASLMQALVSRKDGPPT 264

Query: 256 PHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLV 315
           PHLRITALSRGGSGRRSI TVQETGRRLVAFAASIGQPFSFHQCRLDSD+TF+ SALKLV
Sbjct: 265 PHLRITALSRGGSGRRSIGTVQETGRRLVAFAASIGQPFSFHQCRLDSDDTFRPSALKLV 324

Query: 316 RGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEEETGPIGDGGFVSRFMD 375
           RGEAL++NCML LPHFSYRAPDS+ASFLSGAKTLNPRL+ +VEEE GPIGDGGFVSRFMD
Sbjct: 325 RGEALVMNCMLQLPHFSYRAPDSVASFLSGAKTLNPRLIAMVEEEVGPIGDGGFVSRFMD 384

Query: 376 SLHHYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLARIYRTCGEEEVYSWGDWLGV 435
           SLHHYSA+YDSLEAGFPMQ RARALVERVFLGPRI+GSLARIY   GE+   SWG+ L  
Sbjct: 385 SLHHYSALYDSLEAGFPMQGRARALVERVFLGPRIAGSLARIYSARGEDGC-SWGERLAA 443

Query: 436 VGFKPVNISFANHCQAKLLLGLFNDGYRVEELANNRLVLGWKSRRLLSASVWTSSFDSNL 495
           VGF+P+ ISFANHCQAKLLLGLFNDGYRVEELA+NRLVLGWKSRRLLSAS+WTS  D +L
Sbjct: 444 VGFQPIKISFANHCQAKLLLGLFNDGYRVEELASNRLVLGWKSRRLLSASIWTSPSDPDL 503

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255545442|ref|XP_002513781.1| Nodulation signaling pathway 2 protein, putative [Ricinus communis] gi|223546867|gb|EEF48364.1| Nodulation signaling pathway 2 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224066859|ref|XP_002302249.1| GRAS family transcription factor [Populus trichocarpa] gi|222843975|gb|EEE81522.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359492404|ref|XP_002284426.2| PREDICTED: nodulation-signaling pathway 2 protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147860687|emb|CAN83568.1| hypothetical protein VITISV_030382 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302141844|emb|CBI19047.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507664|ref|XP_003522584.1| PREDICTED: nodulation-signaling pathway 2 protein-like [Glycine max] Back     alignment and taxonomy information
>gi|206581348|gb|ACI14607.1| GRAS family protein [Pisum sativum] Back     alignment and taxonomy information
>gi|56691734|emb|CAH55769.1| GRAS family protein [Pisum sativum] Back     alignment and taxonomy information
>gi|206581346|gb|ACI14606.1| GRAS family protein [Pisum sativum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query495
TAIR|locus:2132482483 AT4G08250 "AT4G08250" [Arabido 0.951 0.975 0.536 7.6e-128
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.735 0.557 0.363 5.6e-52
TAIR|locus:2020487445 LAS "AT1G55580" [Arabidopsis t 0.595 0.662 0.381 7.7e-48
TAIR|locus:2165685405 AT5G41920 "AT5G41920" [Arabido 0.759 0.928 0.346 1e-45
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.715 0.647 0.341 7.1e-45
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.686 0.650 0.359 3.5e-43
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.698 0.677 0.341 1.9e-42
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.717 0.604 0.328 3.6e-41
TAIR|locus:2174974584 AT5G66770 "AT5G66770" [Arabido 0.761 0.645 0.331 1.2e-40
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.731 0.738 0.295 1.8e-39
TAIR|locus:2132482 AT4G08250 "AT4G08250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1255 (446.8 bits), Expect = 7.6e-128, P = 7.6e-128
 Identities = 266/496 (53%), Positives = 327/496 (65%)

Query:     1 MAMDFDDFLHLDFSGYSSXXXXXXXGDDYACNWNDWSPVVDWEALSGGQDDFHDLIESMM 60
             M   ++DFL L FS ++              + ND    +DW+       DF D+IES+M
Sbjct:     1 MNYPYEDFLDLFFSTHTDPLATAASTSSNGYSLNDLD--IDWDC------DFRDVIESIM 52

Query:    61 DDSG--LNPNARVANIAHEP---CNXXXXXXXXXXMAVDEETNGEDFKGLRLVHLLMAAA 115
              D G  + P +    + H+    CN               E   ++ KGLRLVHLL+AAA
Sbjct:    53 GDEGAMMEPESEAVPMLHDQEGLCNSASTGLSVADGVSFGEPKTDESKGLRLVHLLVAAA 112

Query:   116 EALTGVNKSRELAQVILIRLKELVSPNDGSNMERLAAYFTDALQGLLEGAGGVHGNNKHY 175
             +A TG NKSREL +VIL RLK+LVSP D +NMERLAA+FT+ L  LLE         +  
Sbjct:   113 DASTGANKSRELTRVILARLKDLVSPGDRTNMERLAAHFTNGLSKLLE---------RDS 163

Query:   176 TSNGPHHRDD-HHHTDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIM 234
                   HRDD +   DV++AF+LLQ+MSPYV FG+ TA QAILEAV  +RR+HIVDYDI 
Sbjct:   164 VLCPQQHRDDVYDQADVISAFELLQNMSPYVNFGYLTATQAILEAVKYERRIHIVDYDIN 223

Query:   235 EGIQWASLMQALVSRKDGPPAPHLRITALXXXXXXXXXISTVQETGRRLVAFAASIGQPF 294
             EG+QWASLMQALVSR  GP A HLRITAL         ++ VQETGRRL AFA SIGQPF
Sbjct:   224 EGVQWASLMQALVSRNTGPSAQHLRITALSRATNGKKSVAAVQETGRRLTAFADSIGQPF 283

Query:   295 SFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLV 354
             S+  C+LD++  F  S+LKLVRGEA++INCMLHLP FS++ P S+ SFLS AKTLNP+LV
Sbjct:   284 SYQHCKLDTN-AFSTSSLKLVRGEAVVINCMLHLPRFSHQTPSSVISFLSEAKTLNPKLV 342

Query:   355 TLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSL 414
             TLV EE G +G+ GF+ RFMD LH +SA++DSLEAG  + + AR  VERVF+GP ++  L
Sbjct:   343 TLVHEEVGLMGNQGFLYRFMDLLHQFSAIFDSLEAGLSIANPARGFVERVFIGPWVANWL 402

Query:   415 ARIYRTCGEEEVY-SWGDWLGVVGFKPVNISFANHCQAKLLLGLFNDGYRVEELANNRLV 473
              RI     E E + SW  WL   GFKP+ +SF N CQAKLLL LFNDG+RVEEL  N LV
Sbjct:   403 TRITANDAEVESFASWPQWLETNGFKPLEVSFTNRCQAKLLLSLFNDGFRVEELGQNGLV 462

Query:   474 LGWKSRRLLSASVWTS 489
             LGWKSRRL+SAS W S
Sbjct:   463 LGWKSRRLVSASFWAS 478
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020487 LAS "AT1G55580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165685 AT5G41920 "AT5G41920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174974 AT5G66770 "AT5G66770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SUF5SCL26_ARATHNo assigned EC number0.55620.94740.9710yesno
Q5NE24NSP2_MEDTRNo assigned EC number0.66860.97970.9547N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GRAS40
GRAS family protein (507 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query495
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-129
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  379 bits (975), Expect = e-129
 Identities = 172/386 (44%), Positives = 224/386 (58%), Gaps = 18/386 (4%)

Query: 107 LVHLLMAAAEALTGVNKSRELAQVILIRLKELVSPNDGSNMERLAAYFTDALQGLLEGAG 166
           LVHLL+A AEA++  +    LAQ IL RL +L SP  G  M+RLAAYFT+AL   L  +G
Sbjct: 1   LVHLLLACAEAVSSGD--LSLAQAILARLNQLASP-AGDPMQRLAAYFTEALAARLARSG 57

Query: 167 GVHGNNKHYTSNGPHHRDDHHHTDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRRV 226
                +  Y++  P         +VLAA++L  ++SPY+KFGHFTANQAILEA   + RV
Sbjct: 58  -----SSIYSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERV 112

Query: 227 HIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAF 286
           HI+D+DI +G+QW SL+QAL SR  GP  PHLRIT +        S   ++ETG RL  F
Sbjct: 113 HIIDFDIGQGLQWPSLIQALASRPGGP--PHLRITGIGS--PQFSSAEELEETGDRLAQF 168

Query: 287 AASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSY-RAPDSIASFLSG 345
           A S+G PF F+       E      L +  GEAL +NC+  L             +FL  
Sbjct: 169 ADSLGVPFEFNPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPTFLRL 228

Query: 346 AKTLNPRLVTLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERVF 405
            K+LNP++VTLVE+E        F++RF+++LH+YSA++DSLEA  P  S  R  VER  
Sbjct: 229 VKSLNPKVVTLVEQEAN-HNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVEREL 287

Query: 406 LGPRISGSLARIY--RTCGEEEVYSWGDWLGVVGFKPVNISFANHCQAKLLLGLFN-DGY 462
           LG  I   +A     R    E    W + +   GF+PV +S     QAKLLL L+  DGY
Sbjct: 288 LGREIVNVVACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGY 347

Query: 463 RVEELANNRLVLGWKSRRLLSASVWT 488
           RVEE  N  LVLGWK R L++AS W 
Sbjct: 348 RVEED-NGSLVLGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 495
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 96.19
TIGR00740239 methyltransferase, putative. A simple BLAST search 95.06
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 93.44
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 93.21
PLN02233261 ubiquinone biosynthesis methyltransferase 92.97
PRK06202232 hypothetical protein; Provisional 89.55
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 88.8
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 88.71
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 86.99
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 84.58
TIGR03438301 probable methyltransferase. This model represents 83.69
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 81.89
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 81.5
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 80.37
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-108  Score=854.58  Aligned_cols=368  Identities=46%  Similarity=0.725  Sum_probs=340.5

Q ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHhcccCCCCCChhhhHHHHHHHHHHhhhhccCCCCCCCcccccCCCCCCCCC
Q 011012          107 LVHLLMAAAEALTGVNKSRELAQVILIRLKELVSPNDGSNMERLAAYFTDALQGLLEGAGGVHGNNKHYTSNGPHHRDDH  186 (495)
Q Consensus       107 L~~LLl~cAeAV~~~~~~~~~A~~iL~~L~~~aSp~~G~~~qRlA~yFaeAL~~Rl~g~~~~~~~~~~~~~~~p~~~~~~  186 (495)
                      |+|||++||+||++  +|.+.|+.+|++|++++||. |+|+||||+||++||.+||.+++++.+....     +......
T Consensus         1 L~~lLl~cA~Av~~--~~~~~A~~lL~~l~~~as~~-g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~-----~~~~~~~   72 (374)
T PF03514_consen    1 LVQLLLACAEAVAA--GDFARAQELLARLRQLASPT-GDPMQRLAAYFAEALAARLSGSGPGLYSALP-----PSSPSPS   72 (374)
T ss_pred             CHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHhhHHHHHhccCcccccCCC-----Ccccccc
Confidence            68999999999997  57999999999999999986 7999999999999999999997765432221     1101122


Q ss_pred             ChHHHHHHHHHhhccCCccchhhhhhhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCC
Q 011012          187 HHTDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRG  266 (495)
Q Consensus       187 ~~~~~l~Af~~f~e~sP~~kfahftANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p  266 (495)
                      ...+.+.||++||++|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++||  |+||||||++|
T Consensus        73 ~~~~~~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gp--p~LrIT~i~~~  150 (374)
T PF03514_consen   73 ESSEQLAAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGP--PSLRITGIGPP  150 (374)
T ss_pred             chHHHHHHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCC--CeEEEEeccCC
Confidence            3667899999999999999999999999999999999999999999999999999999999999999  89999999987


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCC---CchHHHHH
Q 011012          267 GSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRA---PDSIASFL  343 (495)
Q Consensus       267 ~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~---~~~~~~fL  343 (495)
                      .++  +...+++||+||.+||+++||||||++|..+++|++++++|++++||+|||||+|+||||...+   +++++.||
T Consensus       151 ~~~--~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L  228 (374)
T PF03514_consen  151 NSG--SADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFL  228 (374)
T ss_pred             CCC--cHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHH
Confidence            655  7789999999999999999999999998889999999999999999999999999999997432   34789999


Q ss_pred             HHhhhcCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhhhhcCCCCCcHHHHHHHHHHhhhhhhhhhhhcc--ccc
Q 011012          344 SGAKTLNPRLVTLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLARIY--RTC  421 (495)
Q Consensus       344 ~~ir~L~PkvvtlvE~ea~~n~~p~F~~RF~eaL~yYsalFDSLda~~p~~s~~R~~iEr~~lg~eI~niVa~~~--r~e  421 (495)
                      +.||+|+|+|||++|+|++||+ |+|++||.|||+||+++|||||+++|+++++|..+|+.+||++|+|||||++  |.|
T Consensus       229 ~~ir~L~P~vvv~~E~ea~~n~-~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~e  307 (374)
T PF03514_consen  229 RVIRSLNPKVVVLVEQEADHNS-PSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVE  307 (374)
T ss_pred             HHHHhcCCCEEEEEeecCCCCC-CchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccc
Confidence            9999999999999999999998 9999999999999999999999999999999999999999999999999986  679


Q ss_pred             CcccccchhhhhccCCceeccCCcchHHHHHHHhcccC-CCCeEEEeCCCEEEEEECCceEEEEEeee
Q 011012          422 GEEEVYSWGDWLGVVGFKPVNISFANHCQAKLLLGLFN-DGYRVEELANNRLVLGWKSRRLLSASVWT  488 (495)
Q Consensus       422 r~E~~~~W~~rm~~AGF~~v~ls~~~~~qAk~ll~~~~-~gy~v~e~~~~~L~LgWk~~pL~s~SaWr  488 (495)
                      |||++++|+.||++|||+++|+|++++.|||+||+.|. +||+|+++ +|||+||||++||+++||||
T Consensus       308 R~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~-~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  308 RHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEED-GGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             cccchhHHHHHHHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEc-CCEEEEEeCCcEEEEEeCcC
Confidence            99999999999999999999999999999999999987 89999974 79999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query495
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 96.74
3dtn_A234 Putative methyltransferase MM_2633; structural gen 93.95
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 93.72
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 93.63
3dp7_A363 SAM-dependent methyltransferase; structural genomi 93.42
2r3s_A335 Uncharacterized protein; methyltransferase domain, 93.31
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 93.14
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 91.52
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 90.89
1xxl_A239 YCGJ protein; structural genomics, protein structu 89.84
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 89.6
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 89.48
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 89.42
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 89.22
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 88.59
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 88.49
1vl5_A260 Unknown conserved protein BH2331; putative methylt 88.27
3dh0_A219 SAM dependent methyltransferase; cystal structure, 88.04
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 87.79
3hnr_A220 Probable methyltransferase BT9727_4108; structural 86.83
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 86.26
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 86.1
3m70_A286 Tellurite resistance protein TEHB homolog; structu 86.03
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 85.02
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 84.13
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 83.89
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 83.7
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 83.38
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 83.34
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 83.13
3ocj_A305 Putative exported protein; structural genomics, PS 81.53
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 81.4
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 81.01
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 80.71
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 80.08
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=96.74  E-value=0.0035  Score=61.24  Aligned_cols=107  Identities=15%  Similarity=0.220  Sum_probs=62.4

Q ss_pred             eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCc
Q 011012          225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSD  304 (495)
Q Consensus       225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~  304 (495)
                      .-+|+|+|.|.|.    +...|+.+-..   |..+||||+.      +...++...+++.++-  ...+++|..-   +.
T Consensus        71 ~~~vLDlGcGtG~----~~~~la~~~~~---~~~~v~gvD~------s~~ml~~A~~~~~~~~--~~~~v~~~~~---D~  132 (261)
T 4gek_A           71 GTQVYDLGCSLGA----ATLSVRRNIHH---DNCKIIAIDN------SPAMIERCRRHIDAYK--APTPVDVIEG---DI  132 (261)
T ss_dssp             TCEEEEETCTTTH----HHHHHHHTCCS---SSCEEEEEES------CHHHHHHHHHHHHTSC--CSSCEEEEES---CT
T ss_pred             CCEEEEEeCCCCH----HHHHHHHhcCC---CCCEEEEEEC------CHHHHHHHHHHHHhhc--cCceEEEeec---cc
Confidence            3479999999884    45666766433   4789999974      3445665555544321  2235666532   22


Q ss_pred             cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEE-EEEee
Q 011012          305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLV-TLVEE  359 (495)
Q Consensus       305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvv-tlvE~  359 (495)
                      +++.     ..+-.+++  |.+.|||+.   +..+..+|+.| |.|+|.-+ ++.|.
T Consensus       133 ~~~~-----~~~~d~v~--~~~~l~~~~---~~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          133 RDIA-----IENASMVV--LNFTLQFLE---PSERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             TTCC-----CCSEEEEE--EESCGGGSC---HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccc-----ccccccce--eeeeeeecC---chhHhHHHHHHHHHcCCCcEEEEEec
Confidence            2332     22223444  445788883   33466788877 66999854 44443
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query495
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 96.71
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.06
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 95.71
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 95.57
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 92.4
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 90.88
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 89.39
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 87.37
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 87.15
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 86.56
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 86.27
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 85.8
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 82.34
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 81.13
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.71  E-value=0.0073  Score=54.54  Aligned_cols=106  Identities=14%  Similarity=0.195  Sum_probs=62.7

Q ss_pred             CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCC
Q 011012          224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDS  303 (495)
Q Consensus       224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~  303 (495)
                      ..-||+|+|.|.|.    +...|+.... .  |..+||||+.      +..-++...+++.    ..+....++....+ 
T Consensus        39 ~~~~vLDlGCGtG~----~~~~l~~~~~-~--~~~~v~giD~------S~~ml~~A~~~~~----~~~~~~~~~~~~~d-  100 (225)
T d1im8a_          39 ADSNVYDLGCSRGA----ATLSARRNIN-Q--PNVKIIGIDN------SQPMVERCRQHIA----AYHSEIPVEILCND-  100 (225)
T ss_dssp             TTCEEEEESCTTCH----HHHHHHHTCC-C--SSCEEEEECS------CHHHHHHHHHHHH----TSCCSSCEEEECSC-
T ss_pred             CCCEEEEeccchhh----HHHHHHHhhc-C--CCCceEEeCC------CHHHHHHHHHHhH----hhcccchhhhccch-
Confidence            34589999998884    3345554432 2  5799999964      4455555555553    34444444333222 


Q ss_pred             ccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012          304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV  357 (495)
Q Consensus       304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv  357 (495)
                      ..++       ..+..-+|.|.+.|||+.   +.....+|+.| |.|+|.-.++.
T Consensus       101 ~~~~-------~~~~~d~i~~~~~l~~~~---~~d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         101 IRHV-------EIKNASMVILNFTLQFLP---PEDRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             TTTC-------CCCSEEEEEEESCGGGSC---GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhcc-------ccccceeeEEeeeccccC---hhhHHHHHHHHHHhCCCCceeec
Confidence            1122       223445566777888883   23456788887 66999865544
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure